1
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Bissoyi A, Gao Y, Tomás RMF, Kinney NLH, Whale TF, Guo Q, Gibson MI. Cryopreservation and Rapid Recovery of Differentiated Intestinal Epithelial Barrier Cells at Complex Transwell Interfaces Is Enabled by Chemically Induced Ice Nucleation. ACS APPLIED MATERIALS & INTERFACES 2024; 16. [PMID: 38671549 PMCID: PMC11082836 DOI: 10.1021/acsami.4c03931] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2024] [Revised: 04/07/2024] [Accepted: 04/18/2024] [Indexed: 04/28/2024]
Abstract
Cell-based models, such as organ-on-chips, can replace and inform in vivo (animal) studies for drug discovery, toxicology, and biomedical science, but most cannot be banked "ready to use" as they do not survive conventional cryopreservation with DMSO alone. Here, we demonstrate how macromolecular ice nucleators enable the successful cryopreservation of epithelial intestinal models supported upon the interface of transwells, allowing recovery of function in just 7 days post-thaw directly from the freezer, compared to 21 days from conventional suspension cryopreservation. Caco-2 cells and Caco-2/HT29-MTX cocultures are cryopreserved on transwell inserts, with chemically induced ice nucleation at warmer temperatures resulting in increased cell viability but crucially retaining the complex cellular adhesion on the transwell insert interfaces, which other cryoprotectants do not. Trans-epithelial electrical resistance measurements, confocal microscopy, histology, and whole-cell proteomics demonstrated the rapid recovery of differentiated cell function, including the formation of tight junctions. Lucifer yellow permeability assays confirmed that the barrier functions of the cells were intact. This work will help solve the long-standing problem of transwell tissue barrier model storage, facilitating access to advanced predictive cellular models. This is underpinned by precise control of the nucleation temperature, addressing a crucial biophysical mode of damage.
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Affiliation(s)
- Akalabya Bissoyi
- Department
of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, U.K.
- Manchester
Institute of Biotechnology, University of
Manchester, 131 Princess Street, Manchester M1 7DN, U.K.
| | - Yanan Gao
- Department
of Chemistry, University of Warwick, Coventry CV4 7AL, U.K.
- Department
of Biomedical Engineering, Southern University
of Science and Technology, Shenzhen, Guangdong 518055, China
| | - Ruben M. F. Tomás
- Cryologyx
Ltd, Venture Centre, University of Warwick
Science Park, Coventry CV4 7EZ, U.K.
| | - Nina L. H. Kinney
- Department
of Chemistry, University of Warwick, Coventry CV4 7AL, U.K.
- Royal
Botanic Gardens Kew, Ardingly, West Sussex RH17 6TN, U.K.
| | - Thomas F. Whale
- Department
of Chemistry, University of Warwick, Coventry CV4 7AL, U.K.
- School
of Earth and Environment, University of
Leeds, Leeds LS2 9JT, U.K.
| | - Qiongyu Guo
- Department
of Biomedical Engineering, Southern University
of Science and Technology, Shenzhen, Guangdong 518055, China
| | - Matthew I. Gibson
- Department
of Chemistry, University of Warwick, Coventry CV4 7AL, U.K.
- Division
of Biomedical Sciences, Warwick Medical School, University of Warwick, Coventry CV4 7AL, U.K.
- Department
of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, U.K.
- Manchester
Institute of Biotechnology, University of
Manchester, 131 Princess Street, Manchester M1 7DN, U.K.
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2
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Fu Y, Cao Y, Chang Z, Zou C, Jiang D, Gao H, Jia C. Effects of Flammulina velutipes polysaccharide with ice recrystallization inhibition activity on the quality of beef patties during freeze-thaw cycles: An emphasis on water status and distribution. Meat Sci 2024; 209:109420. [PMID: 38154371 DOI: 10.1016/j.meatsci.2023.109420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Revised: 11/07/2023] [Accepted: 12/22/2023] [Indexed: 12/30/2023]
Abstract
The antifreeze activity of Flammulina velutipes polysaccharide (FVP) autoclave-extracted with dilute alkaline and effects of FVP on moisture status, size of ice crystals, physical and chemical characteristics of beef patties during repeated freeze-thaw (F-T) cycles were investigated. Results showed that FVP exhibited ice recrystallization inhibition activity and was able to alter the onset freezing/melting temperature of beef patties. 0.01% FVP significantly alleviated (P < 0.05) the decrement in water holding capacity by inhibiting water migration, restraining the mobility of water, and reducing the size of ice crystals of beef patties during the repeated F-T cycles. In addition, FVP could effectively inhibited oxidation reaction and protein aggregation of beef patties with significant decreases in TBARS value, protein turbidity, contents of total sulfhydryl and carbonyl of myofibrillar protein, and an increase in protein solubility during the repeated cycles. These results suggest FVP could be developed to be a promising cryoprotectant in frozen patties.
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Affiliation(s)
- Yin Fu
- School of Life Sciences, East China Normal University, Shanghai 200241, China
| | - Yan Cao
- School of Life Sciences, East China Normal University, Shanghai 200241, China
| | - Zhongyi Chang
- School of Life Sciences, East China Normal University, Shanghai 200241, China
| | - Chunjing Zou
- School of Life Sciences, East China Normal University, Shanghai 200241, China
| | - Deming Jiang
- School of Life Sciences, East China Normal University, Shanghai 200241, China
| | - Hongliang Gao
- School of Life Sciences, East China Normal University, Shanghai 200241, China
| | - Caifeng Jia
- School of Life Sciences, East China Normal University, Shanghai 200241, China.
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3
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Eufemio RJ, Schwidetzky R, Meister K. Measurement of Ice Nucleation Activity of Biological Samples. Methods Mol Biol 2024; 2730:101-107. [PMID: 37943453 DOI: 10.1007/978-1-0716-3503-2_7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2023]
Abstract
Experimentation with ice-nucleating biomolecules is needed to advance the fundamental understanding of biotic heterogeneous ice nucleation. Standard experimental procedures vary with sample type. Here we describe a generalized primary purification and analysis process to measure ice nucleation activity of biological samples using an advanced freezing droplet assay.
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Affiliation(s)
- Rosemary J Eufemio
- Biomolecular Sciences Graduate Program, Boise State University, Boise, ID, USA
| | | | - Konrad Meister
- Biomolecular Sciences Graduate Program, Boise State University, Boise, ID, USA.
- Max Planck Institute for Polymer Research, Mainz, Germany.
- Department of Chemistry and Biochemistry, Boise State University, Boise, ID, USA.
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4
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Mills SA, Maya-Manzano JM, Tummon F, MacKenzie AR, Pope FD. Machine learning methods for low-cost pollen monitoring - Model optimisation and interpretability. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 903:165853. [PMID: 37549701 DOI: 10.1016/j.scitotenv.2023.165853] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 07/10/2023] [Accepted: 07/26/2023] [Indexed: 08/09/2023]
Abstract
Pollen is a major issue globally, causing as much as 40 % of the population to suffer from hay fever and other allergic conditions. Current techniques for monitoring pollen are either laborious and slow, or expensive, thus alternative methods are needed to provide timely and more localised information on airborne pollen concentrations. We have demonstrated previously that low-cost Optical Particle Counter (OPC) sensors can be used to estimate pollen concentrations when machine learning methods are used to process the data and learn the relationships between OPC output data and conventionally measured pollen concentrations. This study demonstrates how methodical hyperparameter tuning can be employed to significantly improve model performance. We present the results of a range of models based on tuned hyperparameter configurations trained to predict Poaceae (Barnhart), Quercus (L.), Betula (L.), Pinus (L.) and total pollen concentrations. The results achieved here are a significant improvement on results we previously reported: the average R2 scores for the total pollen models have at least doubled compared to using previous parameter settings. Furthermore, we employ the explainable Artificial Intelligence (XAI) technique, SHAP, to interpret the models and understand how each of the input features (i.e. particle sizes) affect the estimated output concentration for each pollen type. In particular, we found that Quercus pollen has a strong positive correlation with particles of optical diameter 1.7-2.3 μm, which distinguishes it from other pollen types such as Poaceae and may suggest that type-specific subpollen particles are present in this size range. There is much further work to be done, especially in training and testing models on data obtained across different environments to evaluate the extent of generalisability. Nevertheless, this work demonstrates the potential this method can offer for low-cost monitoring of pollen and the valuable insight we can gain from what the model has learned.
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Affiliation(s)
- Sophie A Mills
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham B15 2TT, UK; Birmingham Institute of Forest Research, University of Birmingham, Birmingham B15 2TT, UK
| | - José M Maya-Manzano
- Centre of Allergy & Environment (ZAUM), Member of the German Centre for Lung Research (DZL), Technical University and Helmholtz Centre Munich, Munich, Germany; Department of Plant Biology, Ecology and Earth Sciences, Area of Botany, University of Extremadura, Badajoz, Spain
| | - Fiona Tummon
- Federal Office of Meteorology and Climatology MeteoSwiss, Payerne, Switzerland
| | - A Rob MacKenzie
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham B15 2TT, UK; Birmingham Institute of Forest Research, University of Birmingham, Birmingham B15 2TT, UK
| | - Francis D Pope
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham B15 2TT, UK; Birmingham Institute of Forest Research, University of Birmingham, Birmingham B15 2TT, UK.
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5
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Tomás RMF, Dallman R, Congdon TR, Gibson MI. Cryopreservation of assay-ready hepatocyte monolayers by chemically-induced ice nucleation: preservation of hepatic function and hepatotoxicity screening capabilities. Biomater Sci 2023; 11:7639-7654. [PMID: 37840476 PMCID: PMC10661096 DOI: 10.1039/d3bm01046e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Accepted: 09/30/2023] [Indexed: 10/17/2023]
Abstract
Cell culture plays a critical role in biomedical discovery and drug development. Primary hepatocytes and hepatocyte-derived cell lines are especially important cellular models for drug discovery and development. To enable high-throughput screening and ensure consistent cell phenotypes, there is a need for practical and efficient cryopreservation methods for hepatocyte-derived cell lines and primary hepatocytes in an assay-ready format. Cryopreservation of cells as adherent monolayers in 96-well plates presents unique challenges due to low volumes being susceptible to supercooling, leading to low recovery and well-to-well variation. Primary cell cryopreservation is also particularly challenging due to the loss of cell viability and function. In this study, we demonstrate the use of soluble ice nucleator materials (IN) to cryopreserve a hepatic-derived cell line (HepG2) and primary mouse hepatocytes, as adherent monolayers. HepG2 cell recovery was near 100% and ∼75% of primary hepatocytes were recovered 24 hours post-thaw compared to just 10% and 50% with standard 10% DMSO, respectively. Post-thaw assessment showed that cryopreserved HepG2 cells retain membrane integrity, metabolic activity, proliferative capacity and differentiated hepatic functions including urea secretion, cytochrome P450 levels and lipid droplet accumulation. Cryopreserved primary hepatocytes exhibited reduced hepatic functions compared to fresh hepatocytes, but functional levels were similar to commercial suspension-cryopreserved hepatocytes, with the added benefit of being stored in an assay-ready format. In addition, normal cuboidal morphology and minimal membrane damage were observed 24 hours post-thaw. Cryopreserved HepG2 and mouse hepatocytes treated with a panel of pharmaceutically active compounds produced near-identical dose-response curves and EC50 values compared to fresh hepatocytes, confirming the utility of cryopreserved bankable cells in drug metabolism and hepatotoxicity studies. Cryopreserved adherent HepG2 cells and primary hepatocytes in 96 well plates can significantly reduce the time and resource burden associated with routine cell culture and increases the efficiency and productivity of high-throughput drug screening assays.
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Affiliation(s)
- Ruben M F Tomás
- Division of Biomedical Sciences, Warwick Medical School, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK.
| | - Robert Dallman
- Division of Biomedical Sciences, Warwick Medical School, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK.
| | | | - Matthew I Gibson
- Division of Biomedical Sciences, Warwick Medical School, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK.
- Department of Chemistry, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK
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6
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Schwidetzky R, de Almeida Ribeiro I, Bothen N, Backes AT, DeVries AL, Bonn M, Fröhlich-Nowoisky J, Molinero V, Meister K. Functional aggregation of cell-free proteins enables fungal ice nucleation. Proc Natl Acad Sci U S A 2023; 120:e2303243120. [PMID: 37943838 PMCID: PMC10655213 DOI: 10.1073/pnas.2303243120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 10/06/2023] [Indexed: 11/12/2023] Open
Abstract
Biological ice nucleation plays a key role in the survival of cold-adapted organisms. Several species of bacteria, fungi, and insects produce ice nucleators (INs) that enable ice formation at temperatures above -10 °C. Bacteria and fungi produce particularly potent INs that can promote water crystallization above -5 °C. Bacterial INs consist of extended protein units that aggregate to achieve superior functionality. Despite decades of research, the nature and identity of fungal INs remain elusive. Here, we combine ice nucleation measurements, physicochemical characterization, numerical modeling, and nucleation theory to shed light on the size and nature of the INs from the fungus Fusarium acuminatum. We find ice-binding and ice-shaping activity of Fusarium IN, suggesting a potential connection between ice growth promotion and inhibition. We demonstrate that fungal INs are composed of small 5.3 kDa protein subunits that assemble into ice-nucleating complexes that can contain more than 100 subunits. Fusarium INs retain high ice-nucleation activity even when only the ~12 kDa fraction of size-excluded proteins are initially present, suggesting robust pathways for their functional aggregation in cell-free aqueous environments. We conclude that the use of small proteins to build large assemblies is a common strategy among organisms to create potent biological INs.
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Affiliation(s)
- Ralph Schwidetzky
- Department of Molecular Spectroscopy, Max Planck Institute for Polymer Research, Mainz55128, Germany
| | | | - Nadine Bothen
- Multiphase Chemistry Department, Max Planck Institute for Chemistry, Mainz55128, Germany
| | - Anna T. Backes
- Multiphase Chemistry Department, Max Planck Institute for Chemistry, Mainz55128, Germany
| | - Arthur L. DeVries
- Department of Animal Biology, University of Illinois at Urbana-Champaign, Urbana, IL61801
| | - Mischa Bonn
- Department of Molecular Spectroscopy, Max Planck Institute for Polymer Research, Mainz55128, Germany
| | | | - Valeria Molinero
- Department of Chemistry, The University of Utah, Salt Lake City, UT84112
| | - Konrad Meister
- Department of Molecular Spectroscopy, Max Planck Institute for Polymer Research, Mainz55128, Germany
- Department of Chemistry and Biochemistry, Boise State University, Boise, ID83725
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7
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Ren X, Zheng W, Li L, Feng S, Zhang H, Xiong Z, Wu Y, Song Z, Ai L, Xie F. Effects of tamarind seed polysaccharides on physicochemical characteristics of frozen dough: structure-function relationship. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2023; 103:6574-6583. [PMID: 37243337 DOI: 10.1002/jsfa.12752] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2023] [Revised: 03/31/2023] [Accepted: 05/24/2023] [Indexed: 05/28/2023]
Abstract
BACKGROUND Recently, frozen dough has become more popular because of its ability to be quickly transformed into freshly baked foods. During the storage and transport process, frozen dough can suffer some degree of damage caused by ice crystallization and recrystallization. Adding polysaccharides to frozen dough is a good way to solve this problem. Tamarind seed polysaccharide (TSP) has excellent ice crystal steady ability and has also been widely used in frozen foods. However, there is no study on the use of TSP in frozen dough. RESULTS TSP can stabilize the bound water content, inhibit the freezable water content, and increase elasticity. However, the dough with different structures of TSP added was less firm after 30 days of freezing compared to the dough without TSP, and the porosity and stomatal density of the prepared steamed bread gradually decreased. The addition of TSP reduced gluten deterioration during the freezing process, thus decreasing the collapse and uneven porosity of the steamed bread. CONCLUSIONS The results could provide new insights into the structure of TSP and its effect on the quality characteristics of frozen dough. © 2023 Society of Chemical Industry.
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Affiliation(s)
- Xiaolong Ren
- Department of Food Science and Technology, School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai, China
| | - Weiqi Zheng
- Department of Food Science and Technology, School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai, China
| | - Lin Li
- Department of Food Science and Technology, School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai, China
| | - Shuo Feng
- Department of Food Science and Technology, School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai, China
| | - Hui Zhang
- Department of Food Science and Technology, School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai, China
| | - Zhiqiang Xiong
- Department of Food Science and Technology, School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai, China
| | - Yan Wu
- Department of Food Science and Technology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China
| | - Zibo Song
- Yunnan Maoduoli Group Food Co., Ltd, Yuxi, China
| | - Lianzhong Ai
- Department of Food Science and Technology, School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai, China
| | - Fan Xie
- Department of Food Science and Technology, School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai, China
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8
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Yadav K, Arya M, Prakash S, Jha BS, Manchanda P, Kumar A, Deswal R. Brassica juncea leaf cuticle contains xylose and mannose (xylomannan) which inhibit ice recrystallization on the leaf surface. PLANTA 2023; 258:44. [PMID: 37460860 DOI: 10.1007/s00425-023-04203-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Accepted: 07/10/2023] [Indexed: 07/20/2023]
Abstract
MAIN CONCLUSION Conjugated sugars showed antifreeze activity in the cuticle by ice recrystallization inhibition rather than thermal hysteresis, enhancing freezing capacity at the surface of B. juncea leaves. Antifreeze biomolecules play a crucial role in mitigating the physical damage from frost by controlling extracellular ice crystal growth in plants. Antifreeze proteins (AFPs) are reported from the apoplast of different plants. Interestingly, there is no report about antifreeze properties of the cuticle. Here, we report the potential antifreeze activity in the Brassica juncea (BJ) leaf cuticle. Nano LC-MS/MS analysis of a cuticle protein enriched fraction (CPE) predicted over 30 putative AFPs using CryoProtect server and literature survey. Ice crystal morphology (ICM) and ice recrystallization inhibition (IRI) analysis of ABC supernatant showed heat and pronase-resistant, non-protein antifreeze activities as well as hexagonal ice crystals with TH of 0.17 °C and IRI 46%. The ZipTip processed ABC supernatant (without peptides) had no effect on TH activity, confirming a non-protein antifreeze molecule contributing to activity. To understand the origin and to confirm the source of antifreeze activity, cuticular membranes were isolated by pectinase and cellulase hydrolysis. FTIR analysis of the intact cuticle showed xylose, mannose, cellulose, and glucose. Xylanase and cellulase treatments of the ZipTip processed ABC supernatant led to an increase in sugar content and 50% loss in antifreeze activity. UV spectroscopy and NMR analysis supported the finding of FTIR and enzyme hydrolysis suggesting the contribution of xylose and mannose to antifreeze activity. By TLC analysis, conjugated sugars were found in the cuticle. This work has opened up a new research area where the antifreeze capacity needs to be established with regard to complete characterization and mechanism of action of the antifreeze carbohydrates (conjugated sugars) on the leaf surface.
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Affiliation(s)
- Kailash Yadav
- Molecular Plant Physiology and Proteomics Laboratory, Department of Botany, University of Delhi, Delhi, 110007, India
| | - Meenakshi Arya
- Department of Botany, Dyal Singh College, University of Delhi, Delhi, 110003, India
| | - Satya Prakash
- Department of Botany, Acharya Narendra Dev College, University of Delhi, Delhi, 110019, India
| | - Bhavana Sharma Jha
- Department of Botany, Gargi College, University of Delhi, Delhi, 110049, India
| | - Preet Manchanda
- Molecular Plant Physiology and Proteomics Laboratory, Department of Botany, University of Delhi, Delhi, 110007, India
| | - Abhishek Kumar
- Molecular Plant Physiology and Proteomics Laboratory, Department of Botany, University of Delhi, Delhi, 110007, India
| | - Renu Deswal
- Molecular Plant Physiology and Proteomics Laboratory, Department of Botany, University of Delhi, Delhi, 110007, India.
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9
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Eufemio RJ, de Almeida Ribeiro I, Sformo TL, Laursen GA, Molinero V, Fröhlich-Nowoisky J, Bonn M, Meister K. Lichen species across Alaska produce highly active and stable ice nucleators. BIOGEOSCIENCES (ONLINE) 2023; 20:2805-2812. [PMID: 38818347 PMCID: PMC11138219 DOI: 10.5194/bg-20-2805-2023] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2024]
Abstract
Forty years ago, lichens were identified as extraordinary biological ice nucleators (INs) that enable ice formation at temperatures close to 0°C. By employing INs, lichens thrive in freezing environments that surpass the physiological limits of other vegetation, thus making them the majority of vegetative biomass in northern ecosystems. Aerosolized lichen INs might further impact cloud glaciation and have the potential to alter atmospheric processes in a warming Arctic. Despite the ecological importance and formidable ice nucleation activities, the abundance, diversity, sources, and role of ice nucleation in lichens remain poorly understood. Here, we investigate the ice nucleation capabilities of lichens collected from various ecosystems across Alaska. We find ice-nucleating activity in lichen to be widespread, particularly in the coastal rainforest of Southeast Alaska. Across 29 investigated lichen, all species show ice nucleation temperatures above -15 °C and ~30% initiate freezing at temperatures above -6 °C. Concentration series of lichen ice nucleation assays in combination with statistical analysis reveal that the lichens contain two subpopulations of INs, similar to previous observations in bacteria. However, unlike the bacterial INs, the lichen INs appear as independent subpopulations resistant to freeze-thaw cycles and against temperature treatment. The ubiquity and high stability of the lichen INs suggest that they can impact local atmospheric processes and that ice nucleation activity is an essential trait for their survival in cold environments.
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Affiliation(s)
- Rosemary J. Eufemio
- Department of Chemistry and Biochemistry, Boise State University, Boise, ID 83725, USA
- Biomolecular Sciences Graduate Programs, Boise State University, Boise, ID 83725, USA
| | | | - Todd L. Sformo
- Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks, AK 99775, USA
| | - Gary A. Laursen
- High Latitude Mycological Research Institute, University of Montana, Missoula, MT 59801, USA
| | | | | | - Mischa Bonn
- Max Planck Institute for Polymer Research, 55128 Mainz, Germany
| | - Konrad Meister
- Department of Chemistry and Biochemistry, Boise State University, Boise, ID 83725, USA
- Max Planck Institute for Polymer Research, 55128 Mainz, Germany
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10
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Murray K, Gao Y, Griffiths CA, Kinney NLH, Guo Q, Gibson MI, Whale TF. Chemically Induced Extracellular Ice Nucleation Reduces Intracellular Ice Formation Enabling 2D and 3D Cellular Cryopreservation. JACS AU 2023; 3:1314-1320. [PMID: 37234117 PMCID: PMC10207112 DOI: 10.1021/jacsau.3c00056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Revised: 03/24/2023] [Accepted: 04/20/2023] [Indexed: 05/27/2023]
Abstract
3D cell assemblies such as spheroids reproduce the in vivo state more accurately than traditional 2D cell monolayers and are emerging as tools to reduce or replace animal testing. Current cryopreservation methods are not optimized for complex cell models, hence they are not easily banked and not as widely used as 2D models. Here we use soluble ice nucleating polysaccharides to nucleate extracellular ice and dramatically improve spheroid cryopreservation outcomes. This protects the cells beyond using DMSO alone, and with the major advantage that the nucleators function extracellularly and hence do not need to permeate the 3D cell models. Critical comparison of suspension, 2D and 3D cryopreservation outcomes demonstrated that warm-temperature ice nucleation reduces the formation of (fatal) intracellular ice, and in the case of 2/3D models this reduces propagation of ice between adjacent cells. This demonstrates that extracellular chemical nucleators could revolutionize the banking and deployment of advanced cell models.
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Affiliation(s)
- Kathryn
A. Murray
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, United Kingdom
- Division
of Biomedical Sciences, Warwick Medical School, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, United Kingdom
| | - Yanan Gao
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, United Kingdom
- Department
of Biomedical Engineering, Southern University
of Science and Technology, Shenzhen, Guangdong 518055, China
| | - Christopher A. Griffiths
- Department
of Aquatic Resources, Institute of Marine Research, Swedish University of Agricultural Sciences, Turistgatan 5, 453 30 Lysekil, Sweden
| | - Nina L. H. Kinney
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, United Kingdom
| | - Qiongyu Guo
- Department
of Biomedical Engineering, Southern University
of Science and Technology, Shenzhen, Guangdong 518055, China
| | - Matthew I. Gibson
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, United Kingdom
- Division
of Biomedical Sciences, Warwick Medical School, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, United Kingdom
| | - Thomas F. Whale
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, United Kingdom
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11
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Mills SA, Bousiotis D, Maya-Manzano JM, Tummon F, MacKenzie AR, Pope FD. Constructing a pollen proxy from low-cost Optical Particle Counter (OPC) data processed with Neural Networks and Random Forests. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 871:161969. [PMID: 36754323 DOI: 10.1016/j.scitotenv.2023.161969] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Revised: 01/09/2023] [Accepted: 01/29/2023] [Indexed: 06/18/2023]
Abstract
Pollen allergies affect a significant proportion of the global population, and this is expected to worsen in years to come. There is demand for the development of automated pollen monitoring systems. Low-cost Optical Particle Counters (OPCs) measure particulate matter and have attractive advantages of real-time high time resolution data and affordable costs. This study asks whether low-cost OPC sensors can be used for meaningful monitoring of airborne pollen. We employ a variety of methods, including supervised machine learning techniques, to construct pollen proxies from hourly-average OPC data and evaluate their performance, holding out 40 % of observations to test the proxies. The most successful methods are supervised machine learning Neural Network (NN) and Random Forest (RF) methods, trained from pollen concentrations collected from a Hirst-type sampler. These perform significantly better than using a simple particle size-filtered proxy or a Positive Matrix Factorisation (PMF) source apportionment pollen proxy. Twelve NN and RF models were developed to construct a pollen proxy, each varying by model type, input features and target variable. The results show that such models can construct useful information on pollen from OPC data. The best metrics achieved (Spearman correlation coefficient = 0.85, coefficient of determination = 0.67) were for the NN model constructing a Poaceae (grass) pollen proxy, based on particle size information, temperature, and relative humidity. Ability to distinguish high pollen events was evaluated using F1 Scores, a score reflecting the fraction of true positives with respect to false positives and false negatives, with promising results (F1 ≤ 0.83). Model-constructed proxies demonstrated the ability to follow monthly and diurnal trends in pollen. We discuss the suitability of OPCs for monitoring pollen and offer advice for future progress. We demonstrate an attractive alternative for automated pollen monitoring that could provide valuable and timely information to the benefit of pollen allergy sufferers.
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Affiliation(s)
- Sophie A Mills
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham B15 2TT, UK; Birmingham Institute of Forest Research, University of Birmingham, Birmingham B15 2TT, UK
| | - Dimitrios Bousiotis
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham B15 2TT, UK
| | - José M Maya-Manzano
- Centre of Allergy & Environment (ZAUM), Member of the German Centre for Lung Research (DZL), Technical University and Helmholtz Centre Munich, Munich, Germany
| | - Fiona Tummon
- Federal Office of Meteorology and Climatology MeteoSwiss, Payerne, Switzerland
| | - A Rob MacKenzie
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham B15 2TT, UK; Birmingham Institute of Forest Research, University of Birmingham, Birmingham B15 2TT, UK
| | - Francis D Pope
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham B15 2TT, UK; Birmingham Institute of Forest Research, University of Birmingham, Birmingham B15 2TT, UK.
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12
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Eickhoff L, Keßler M, Stubbs C, Derksen J, Viefhues M, Anselmetti D, Gibson MI, Hoge B, Koop T. Ice nucleation in aqueous solutions of short- and long-chain poly(vinyl alcohol) studied with a droplet microfluidics setup. J Chem Phys 2023; 158:2882248. [PMID: 37093996 DOI: 10.1063/5.0136192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Accepted: 02/22/2023] [Indexed: 04/26/2023] Open
Abstract
Poly(vinyl alcohol) (PVA) has ice binding and ice nucleating properties. Here, we explore the dependence of the molecular size of PVA on its ice nucleation activity. For this purpose, we studied ice nucleation in aqueous solutions of PVA samples with molar masses ranging from 370 to 145 000 g mol-1, with a particular focus on oligomer samples with low molar mass. The experiments employed a novel microfluidic setup that is a follow-up on the previous WeIzmann Supercooled Droplets Observation on a Microarray (WISDOM) design by Reicher et al. The modified setup introduced and characterized here, termed nanoliter Bielefeld Ice Nucleation ARraY (nanoBINARY), uses droplet microfluidics with droplets (96 ± 4) µm in diameter and a fluorinated continuous oil phase and surfactant. A comparison of homogeneous and heterogeneous ice nucleation data obtained with nanoBINARY to those obtained with WISDOM shows very good agreement, underpinning its ability to study low-temperature ice nucleators as well as homogeneous ice nucleation due to the low background of impurities. The experiments on aqueous PVA solutions revealed that the ice nucleation activity of shorter PVA chains strongly decreases with a decrease in molar mass. While the cumulative number of ice nucleating sites per mass nm of polymers with different molar masses is the same, it becomes smaller for oligomers and completely vanishes for dimer and monomer representatives such as 1,3-butanediol, propan-2-ol, and ethanol, most likely because these molecules become too small to effectively stabilize the critical ice embryo. Overall, our results are consistent with PVA polymers and oligomers acting as heterogeneous ice nucleators.
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Affiliation(s)
- Lukas Eickhoff
- Faculty of Chemistry, Bielefeld University, 33615 Bielefeld, Germany
| | - Mira Keßler
- Faculty of Chemistry, Bielefeld University, 33615 Bielefeld, Germany
| | - Christopher Stubbs
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Jakob Derksen
- Faculty of Physics, Bielefeld University, 33615 Bielefeld, Germany
| | - Martina Viefhues
- Faculty of Physics, Bielefeld University, 33615 Bielefeld, Germany
| | - Dario Anselmetti
- Faculty of Physics, Bielefeld University, 33615 Bielefeld, Germany
| | - Matthew I Gibson
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom
- Division of Biomedical Sciences, Warwick Medical School, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Berthold Hoge
- Faculty of Chemistry, Bielefeld University, 33615 Bielefeld, Germany
| | - Thomas Koop
- Faculty of Chemistry, Bielefeld University, 33615 Bielefeld, Germany
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13
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Daily MI, Whale TF, Kilbride P, Lamb S, John Morris G, Picton HM, Murray BJ. A highly active mineral-based ice nucleating agent supports in situ cell cryopreservation in a high throughput format. J R Soc Interface 2023; 20:20220682. [PMID: 36751925 PMCID: PMC9905984 DOI: 10.1098/rsif.2022.0682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/09/2023] Open
Abstract
Cryopreservation of biological matter in microlitre scale volumes of liquid would be useful for a range of applications. At present, it is challenging because small volumes of water tend to supercool, and deep supercooling is known to lead to poor post-thaw cell viability. Here, we show that a mineral ice nucleator can almost eliminate supercooling in 100 µl liquid volumes during cryopreservation. This strategy of eliminating supercooling greatly enhances cell viability relative to cryopreservation protocols with uncontrolled ice nucleation. Using infrared thermography, we demonstrate a direct relationship between the extent of supercooling and post-thaw cell viability. Using a mineral nucleator delivery system, we open the door to the routine cryopreservation of mammalian cells in multiwell plates for applications such as high throughput toxicology testing of pharmaceutical products and regenerative medicine.
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Affiliation(s)
- Martin I. Daily
- Institute of Climate and Atmospheric Science, School of Earth and Environment, University of Leeds, Leeds LS2 9JT, UK
| | - Thomas F. Whale
- Department of Chemistry, University of Warwick, Gibbet Hill, Coventry CV4 7AL, UK
| | | | | | | | - Helen M. Picton
- Discovery and Translational Science Department, Leeds Institute of Cardiovascular and Metabolic Medicine, School of Medicine, University of Leeds, Leeds LS2 9JT, UK
| | - Benjamin J. Murray
- Institute of Climate and Atmospheric Science, School of Earth and Environment, University of Leeds, Leeds LS2 9JT, UK
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14
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Georgiou PG, Kinney NLH, Kontopoulou I, Baker AN, Hindmarsh SA, Bissoyi A, Congdon TR, Whale TF, Gibson MI. Poly(vinyl alcohol) Molecular Bottlebrushes Nucleate Ice. Biomacromolecules 2022; 23:5285-5296. [PMID: 36441868 DOI: 10.1021/acs.biomac.2c01097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Ice binding proteins (IBP) have evolved to limit the growth of ice but also to promote ice formation by ice-nucleating proteins (INPs). IBPs, which modulate these seemingly distinct processes, often have high sequence similarities, and molecular size/assembly is hypothesized to be a crucial determinant. There are only a few synthetic materials that reproduce INP function, and rational design of ice nucleators has not been achieved due to outstanding questions about the mechanisms of ice binding. Poly(vinyl alcohol) (PVA) is a water-soluble synthetic polymer well known to effectively block ice recrystallization, by binding to ice. Here, we report the synthesis of a polymeric ice nucleator, which mimics the dense assembly of IBPs, using confined ice-binding polymers in a high-molar-mass molecular bottlebrush. Poly(vinyl alcohol)-based molecular bottlebrushes with different side-chain densities were synthesized via a combination of ring-opening metathesis polymerization (ROMP) and reversible addition-fragmentation chain-transfer (RAFT) polymerization, using "grafting-to" and "grafting-through" approaches. The facile preparation of the PVA bottlebrushes was performed via selective hydrolysis of the acetate of the poly(vinyl acetate) (PVAc) side chains of the PVAc bottlebrush precursors. Ice-binding polymer side-chain density was shown to be crucial for nucleation activity, with less dense brushes resulting in colder nucleation than denser brushes. This bio-inspired approach provides a synthetic framework for probing heterogeneous ice nucleation and a route toward defined synthetic nucleators for biotechnological applications.
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Affiliation(s)
- Panagiotis G Georgiou
- Department of Chemistry, University of Warwick, Gibbet Hill Road, CV4 7AL Coventry, U.K
| | - Nina L H Kinney
- Department of Chemistry, University of Warwick, Gibbet Hill Road, CV4 7AL Coventry, U.K
| | - Ioanna Kontopoulou
- Department of Chemistry, University of Warwick, Gibbet Hill Road, CV4 7AL Coventry, U.K
| | - Alexander N Baker
- Department of Chemistry, University of Warwick, Gibbet Hill Road, CV4 7AL Coventry, U.K
| | - Steven A Hindmarsh
- Department of Physics, University of Warwick, Gibbet Hill Road, CV4 7AL Coventry, U.K
| | - Akalabya Bissoyi
- Department of Chemistry, University of Warwick, Gibbet Hill Road, CV4 7AL Coventry, U.K
| | - Thomas R Congdon
- Department of Chemistry, University of Warwick, Gibbet Hill Road, CV4 7AL Coventry, U.K
| | - Thomas F Whale
- Department of Chemistry, University of Warwick, Gibbet Hill Road, CV4 7AL Coventry, U.K
| | - Matthew I Gibson
- Department of Chemistry, University of Warwick, Gibbet Hill Road, CV4 7AL Coventry, U.K.,Division of Biomedical Sciences, Warwick Medical School, University of Warwick, Gibbet Hill Road, CV4 7AL Coventry, U.K
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15
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Du X, Wang B, Li H, Liu H, Shi S, Feng J, Pan N, Xia X. Research progress on quality deterioration mechanism and control technology of frozen muscle foods. Compr Rev Food Sci Food Saf 2022; 21:4812-4846. [PMID: 36201389 DOI: 10.1111/1541-4337.13040] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2022] [Revised: 08/21/2022] [Accepted: 08/24/2022] [Indexed: 01/28/2023]
Abstract
Freezing can prolong the shelf life of muscle foods and is widely used in their preservation. However, inevitable quality deterioration can occur during freezing, frozen storage, and thawing. This review explores the eating quality deterioration characteristics (color, water holding capacity, tenderness, and flavor) and mechanisms (irregular ice crystals, oxidation, and hydrolysis of lipids and proteins) of frozen muscle foods. It also summarizes and classifies the novel physical-field-assisted-freezing technologies (high-pressure, ultrasound, and electromagnetic) and bioactive antifreeze (ice nucleation proteins, antifreeze proteins, natural deep eutectic solvents, carbohydrate, polyphenol, phosphate, and protein hydrolysates), regulating the dynamic process from water to ice. Moreover, some novel thermal and nonthermal thawing technologies to resolve the loss of water and nutrients caused by traditional thawing methods were also reviewed. We concluded that the physical damage caused by ice crystals was the primary reason for the deterioration in eating quality, and these novel techniques promoted the eating quality of frozen muscle foods under proper conditions, including appropriate parameters (power, time, and intermittent mode mentioned in ultrasound-assisted techniques; pressure involved in high-pressure-assisted techniques; and field strength involved in electromagnetic-assisted techniques) and the amounts of bioactive antifreeze. To obtain better quality frozen muscle foods, more efficient technologies and substances must be developed. The synergy of novel freezing/thawing technology may be more effective than individual applications. This knowledge may help improve the eating quality of frozen muscle foods.
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Affiliation(s)
- Xin Du
- College of Food Science, Northeast Agricultural University, Harbin, Heilongjiang, China
| | - Bo Wang
- College of Food Science, Northeast Agricultural University, Harbin, Heilongjiang, China
| | - Haijing Li
- College of Food Science, Northeast Agricultural University, Harbin, Heilongjiang, China
| | - Haotian Liu
- College of Food Science, Northeast Agricultural University, Harbin, Heilongjiang, China
| | - Shuo Shi
- College of Food Science, Northeast Agricultural University, Harbin, Heilongjiang, China
| | - Jia Feng
- College of Food Science, Northeast Agricultural University, Harbin, Heilongjiang, China
| | - Nan Pan
- College of Food Science, Northeast Agricultural University, Harbin, Heilongjiang, China
| | - Xiufang Xia
- College of Food Science, Northeast Agricultural University, Harbin, Heilongjiang, China
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16
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Qin L, Fu Y, Yang F, Chang Z, Zou C, Gao H, Jiang D, Jia C. Effects of polysaccharides autoclave extracted from Flammulina velutipes mycelium on freeze-thaw stability of surimi gels. Lebensm Wiss Technol 2022. [DOI: 10.1016/j.lwt.2022.113941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
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17
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Influence of starch with different degrees and order of gelatinization on the microstructural and mechanical properties of pectin cryogels: A potential pore morphology regulator. Int J Biol Macromol 2022; 222:533-545. [PMID: 36174855 DOI: 10.1016/j.ijbiomac.2022.09.199] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2022] [Revised: 09/18/2022] [Accepted: 09/22/2022] [Indexed: 12/29/2022]
Abstract
The applications of cryogels are defined by their porous morphology as well as mechanical properties. To achieve efficient regulation of porous properties for pectin cryogels, we selected starch as a potential polysaccharide regulator. Pectin/starch composite cryogels with different degrees of gelatinization were formulated, and two ways of starch gelatinization were considered: starch gelatinization occurred before or after pectin crosslinking during forming the hydrogel network. The results showed that high gelatinized starch (73.8 %-100.0 %) rendered pectin cryogels with denser pore morphology and higher mechanical strength. The pore diameter transferred from 160-200 μm to 40-60 μm with the degree of gelatinization, while the total porosity decreased by about 15 % and the specific surface area increased by about 100 m2/g. When starch gelatinization occurred before pectin crosslinking, the hydrogen bond interactions between gelatinized starch and pectin were formed to accelerate the gelation rate of the pectin Ca2+-dependent network. When gelatinization occurred after pectin crosslinking, the pre-formed pectin network delayed the breakdown of the starch crystalline structure during gelatinization. The qualitative regulation of the pore morphology in pectin cryogels by incorporating starches with varying degrees of gelatinization was confirmed.
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18
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Murray KA, Kinney NLH, Griffiths CA, Hasan M, Gibson MI, Whale TF. Pollen derived macromolecules serve as a new class of ice-nucleating cryoprotectants. Sci Rep 2022; 12:12295. [PMID: 35854036 PMCID: PMC9296471 DOI: 10.1038/s41598-022-15545-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Accepted: 06/24/2022] [Indexed: 11/25/2022] Open
Abstract
Cryopreservation of biological material is vital for existing and emerging biomedical and biotechnological research and related applications, but there remain significant challenges. Cryopreservation of cells in sub-milliliter volumes is difficult because they tend to deeply supercool, favoring lethal intracellular ice formation. Some tree pollens are known to produce polysaccharides capable of nucleating ice at warm sub-zero temperatures. Here we demonstrated that aqueous extractions from European hornbeam pollen (pollen washing water, PWW) increased ice nucleation temperatures in 96-well plates from ≈ − 13 °C to ≈ − 7 °C. Application of PWW to the cryopreservation of immortalized T-cells in 96-well plates resulted in an increase of post-thaw metabolic activity from 63.9% (95% CI [58.5 to 69.2%]) to 97.4% (95% CI [86.5 to 108.2%]) of unfrozen control. When applied to cryopreservation of immortalized lung carcinoma monolayers, PWW dramatically increased post-thaw metabolic activity, from 1.6% (95% CI [− 6.6 to 9.79%]) to 55.0% (95% CI [41.6 to 68.4%]). In contrast to other ice nucleating agents, PWW is soluble, sterile and has low cytotoxicity meaning it can be readily incorporated into existing cryopreservation procedures. As such, it can be regarded as a unique class of cryoprotectant which acts by inducing ice nucleation at warm temperatures.
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Affiliation(s)
- Kathryn A Murray
- Department of Chemistry, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK
| | - Nina L H Kinney
- Department of Chemistry, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK
| | - Christopher A Griffiths
- Department of Aquatic Resources, Institute of Marine Research, Swedish University of Agricultural Sciences, Turistgatan 5, 453 30, Lysekil, Sweden.,Ecology and Evolutionary Biology, School of Biosciences, University of Sheffield, Sheffield, S10 2TN, UK
| | - Muhammad Hasan
- Department of Chemistry, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK.,Division of Biomedical Sciences, Warwick Medical School, University of Warwick, Gibbet Hill Road, Coventry, CV47AL, UK
| | - Matthew I Gibson
- Department of Chemistry, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK.,Division of Biomedical Sciences, Warwick Medical School, University of Warwick, Gibbet Hill Road, Coventry, CV47AL, UK
| | - Thomas F Whale
- Department of Chemistry, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK.
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19
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Huang W, Huang J, Guo Z, Liu W. Icephobic/anti-icing properties of superhydrophobic surfaces. Adv Colloid Interface Sci 2022; 304:102658. [PMID: 35381422 DOI: 10.1016/j.cis.2022.102658] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Revised: 03/26/2022] [Accepted: 03/26/2022] [Indexed: 01/31/2023]
Abstract
In the winter, icing on solid surfaces is a typical occurrence that may create a slew of hassles and even tragedies. Anti-icing surfaces are one of the effective solutions for this kind of problem. The roughness of a superhydrophobic surface traps air and weakens the contact between the solid surface and liquid water, allowing water droplets to be removed before freezing. At present, the conventional anti-icing methods including mechanical or thermal technology are not only surface structure unfriendly but also have the obsessions of low efficiency, high energy consumption and high manufacturing costs. Hence, developing a way to remove ice by just modifying the surface shape or chemical composition with a low surface energy is extremely desirable. Numerous attempts have been made to investigate the evolution of ice nucleation and icing on superhydrophobic surfaces under the direction of the ice nucleation hypothesis. In this paper, the research progress of ice nucleation in recent years is reviewed from theoretical and application. The icephobic surfaces are described using the wettability and classical nucleation theories. The benefits and drawbacks of anti-icing superhydrophobic surface are summarized, as well as deicing methods. Finally, several applications of ice phobic materials are illustrated, and some problems and challenges in the research field are discussed. We believed that this review will be useful in guiding future water freezing initiatives.
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20
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Sosso GC, Sudera P, Backes AT, Whale TF, Fröhlich-Nowoisky J, Bonn M, Michaelides A, Backus EHG. The role of structural order in heterogeneous ice nucleation. Chem Sci 2022; 13:5014-5026. [PMID: 35655890 PMCID: PMC9067566 DOI: 10.1039/d1sc06338c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Accepted: 04/07/2022] [Indexed: 01/10/2023] Open
Abstract
The freezing of water into ice is a key process that is still not fully understood. It generally requires an impurity of some description to initiate the heterogeneous nucleation of the ice crystals. The molecular structure, as well as the extent of structural order within the impurity in question, both play an essential role in determining its effectiveness. However, disentangling these two contributions is a challenge for both experiments and simulations. In this work, we have systematically investigated the ice-nucleating ability of the very same compound, cholesterol, from the crystalline (and thus ordered) form to disordered self-assembled monolayers. Leveraging a combination of experiments and simulations, we identify a “sweet spot” in terms of the surface coverage of the monolayers, whereby cholesterol maximises its ability to nucleate ice (which remains inferior to that of crystalline cholesterol) by enhancing the structural order of the interfacial water molecules. These findings have practical implications for the rational design of synthetic ice-nucleating agents. The freezing of water into ice is still not fully understood. Here, we investigate the role of structural disorder within the biologically relevant impurities that facilitate this fundamental phase transition.![]()
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Affiliation(s)
- Gabriele C Sosso
- Department of Chemistry, University of Warwick Gibbet Hill Road Coventry CV4 7AL UK
| | - Prerna Sudera
- Max Planck Institute for Polymer Research Ackermannweg 10 55128 Mainz Germany
| | - Anna T Backes
- Max Planck Institute for Chemistry Hahn-Meitner-Weg 1 55128 Mainz Germany
| | - Thomas F Whale
- Department of Chemistry, University of Warwick Gibbet Hill Road Coventry CV4 7AL UK
| | | | - Mischa Bonn
- Max Planck Institute for Polymer Research Ackermannweg 10 55128 Mainz Germany
| | - Angelos Michaelides
- Yusuf Hamied Department of Chemistry, University of Cambridge Lensfield Road Cambridge CB2 1EW UK
| | - Ellen H G Backus
- Max Planck Institute for Polymer Research Ackermannweg 10 55128 Mainz Germany.,Department of Physical Chemistry, University of Vienna Währingerstrasse 42 1090 Wien Austria
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21
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Bai G, Zhang H. Influences of Oxidation Degree and Size on the Ice Nucleation Efficiency of Graphene Oxide. J Phys Chem Lett 2022; 13:2950-2955. [PMID: 35343693 DOI: 10.1021/acs.jpclett.2c00247] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Figuring out the influences of carbonaceous particle properties on ice nucleation is important to atmospheric science, but it is still a challenge, especially for experimental investigations due to the coupling effect of multiple properties. Here we separately investigate the effects of oxidation degree and size, two typical and debated factors, on ice nucleation efficiency by choosing graphene oxide (GO) as the model. The results show that with the decrease of oxidation degree, ice nucleation efficiency increases through decreasing the ice nucleation free energy barrier (ΔGheter*) on GO surface. Interestingly, although the chosen GO sizes are sufficiently large compared with the sizes of critical ice nuclei, the increase of GO size leads to the increase of ΔGheter* and thus the decrease of ice nucleation efficiency, unlike the general thought that ΔGheter* is not affected by the particle size any more when the size of particle increases to several times that of the critical ice nucleus.
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Affiliation(s)
- Guoying Bai
- School of Materials Science and Engineering, Hebei University of Technology, Tianjin 300401, China
| | - Haiyan Zhang
- School of Materials Science and Engineering, Hebei University of Technology, Tianjin 300401, China
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22
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Isolation of novel wheat bran antifreeze polysaccharides and the cryoprotective effect on frozen dough quality. Food Hydrocoll 2022. [DOI: 10.1016/j.foodhyd.2021.107446] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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23
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Whale TF. Disordering effect of the ammonium cation accounts for anomalous enhancement of heterogeneous ice nucleation. J Chem Phys 2022; 156:144503. [DOI: 10.1063/5.0084635] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Heterogeneous nucleation of ice from supercooled water is the process responsible for triggering nearly all ice formation in the natural environment. Understanding of heterogeneous ice nucleation is particularly key for understanding the formation of ice in clouds, which impacts weather and climate. While many effective ice nucleators are known the mechanisms of their actions remain poorly understood. Some inorganic nucleators have been found to nucleate ice at warmer temperatures in dilute ammonium solution than in pure water. This is surprising, analogous to salty water melting at a warmer temperature than pure water. Here, the magnitude of this effect is rationalized as being due to thermodynamically favorable ammonium-induced disordering of the hydrogen bond network of ice critical clusters formed on inorganic ice nucleators. Theoretical calculations are shown to be consistent with new experimental measurements aimed at finding the maximum magnitude of the effect. The implication of this study is that the ice-nucleating sites and surfaces of many inorganic ice nucleators are either polar or charged and therefore tend to induce formation of hydrogen ordered ice clusters. This work corroborates various literature reports indicating that some inorganic ice nucleators are most effective when nominally neutral and implies a commonality in mechanism between a wide range of inorganic ice nucleators.
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Affiliation(s)
- Thomas F Whale
- Department of Chemistry, University of Warwick, United Kingdom
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24
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Miles CM, Hsu PC, Dixon AM, Khalid S, Sosso GC. Lipid bilayers as potential ice nucleating agents. Phys Chem Chem Phys 2022; 24:6476-6491. [PMID: 35254357 DOI: 10.1039/d1cp05465a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Cellular damage is a key issue in the context of cryopreservation. Much of this damage is believed to be caused by extracellular ice formation at temperatures well above the homogeneous freezing point of pure water. Hence the question: what initiates ice nucleation during cryopreservation? In this paper, we assess whether cellular membranes could be responsible for facilitating the ice nucleation process, and what characteristics would make them good or bad ice nucleating agents. By means of molecular dynamics simulations, we investigate a number of phospholipids and lipopolysaccharide bilayers at the interface with supercooled liquid water. While these systems certainly appear to act as ice nucleating agents, it is likely that other impurities might also play a role in initiating extracellular ice nucleation. Furthermore, we elucidate the factors which affect a bilayer's ability to act as an ice nucleating agent; these are complex, with specific reference to both chemical and structural factors. These findings represent a first attempt to pinpoint the origin of extracellular ice nucleation, with important implications for the cryopreservation process.
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Affiliation(s)
| | - Pin-Chia Hsu
- School of Chemistry, University of Southampton, Southampton, SO17 1BJ, UK
| | - Ann M Dixon
- Department of Chemistry, University of Warwick, Coventry, CV4 7AL, UK.
| | - Syma Khalid
- School of Chemistry, University of Southampton, Southampton, SO17 1BJ, UK.,Department of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK
| | - Gabriele C Sosso
- Department of Chemistry, University of Warwick, Coventry, CV4 7AL, UK.
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25
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Kontopoulou I, Congdon TR, Bassett S, Mair B, Gibson MI. Synthesis of poly(vinyl alcohol) by blue light bismuth oxide photocatalysed RAFT. Evaluation of the impact of freeze/thaw cycling on ice recrystallisation inhibition. Polym Chem 2022; 13:4692-4700. [PMID: 36092983 PMCID: PMC9379775 DOI: 10.1039/d2py00852a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Accepted: 07/23/2022] [Indexed: 11/21/2022]
Abstract
Poly(vinyl alcohol), PVA, is the most potent polymeric ice recrystallisation inhibitor (IRI), mimicking a complex function of ice binding proteins. The IRI activity of PVA scales with its molecular weight and hence broad molecular weight distributions in free radical-derived PVAs lead to activity measurements dominated by small amounts of heavier fractions. Well-defined PVA can be prepared by thermally initiated RAFT/MADIX polymerization using xanthates by the polymerization of the less activated monomer vinyl acetate. The low conversions and molecular weights obtained during this approach, often requires feeding of additional initiator and bulk polymerization. Here we employ bismuth oxide photo-RAFT in solution, using blue light (450 nm), rather than previously reported white light, to obtain a library of PVA's. The use of blue light enabled quantitative conversion and acceptable dispersities. Purple light (380 nm) was also used, but asymmetric molecular weight distributions were obtained in some cases. High concentrations of high molecular weight PVA is known to form cryogels during freeze/thaw which has led to speculation this might limit the use of PVA in environments where the temperature cycles e.g. the construction industry. After 4 freeze/thaw cycles there was only small changes in observable IRI for all synthesised PVAs and two commercial standards. In an extended test, activity was retained after 100 freeze/thaw cycles, mitigating concerns that PVA could not be used in situations where freeze/thaw cycles occur. This work presents a convenient method to obtain well-defined PVAs for cryoscience studies compared to conventional thermal-RAFT and indicates that cryogelation concerns may not prevent their use. Poly(vinyl alcohol) is synthesised using blue light bismuth oxide photo-RAFT, to high conversion. The ice recrystallisation inhibition activity of these polymers was shown to be retained over 100 freeze/thaw cycles.![]()
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Affiliation(s)
| | - Thomas R. Congdon
- Division of Biomedical Sciences, Warwick Medical School, University of Warwick, Coventry, CV4 7AL, UK
- Cryologyx Ltd, 71-75 Shelton Street, London, WC2H 9JQ, UK
| | - Simon Bassett
- Synthomer (UK) Ltd, Central Road, Templefields, Harlow, Essex, CM20 2BH, UK
| | - Ben Mair
- Synthomer (UK) Ltd, Central Road, Templefields, Harlow, Essex, CM20 2BH, UK
| | - Matthew I. Gibson
- Department of Chemistry, University of Warwick, Coventry, CV4 7AL, UK
- Division of Biomedical Sciences, Warwick Medical School, University of Warwick, Coventry, CV4 7AL, UK
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26
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Baloh P, Hanlon R, Anderson C, Dolan E, Pacholik G, Stinglmayr D, Burkart J, Felgitsch L, Schmale DG, Grothe H. Seasonal ice nucleation activity of water samples from alpine rivers and lakes in Obergurgl, Austria. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 800:149442. [PMID: 34426361 DOI: 10.1016/j.scitotenv.2021.149442] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2021] [Revised: 06/29/2021] [Accepted: 07/30/2021] [Indexed: 06/13/2023]
Abstract
Heterogeneous ice nucleation plays an important role in many environmental processes such as ice cloud formation, freezing of water bodies or biological freeze protection in the cryosphere. New information is needed about the seasonal availability, nature, and activity of ice nucleating particles (INPs) in alpine environments. These INPs trigger the phase transition from liquid water to solid ice at elevated subzero temperatures. We collected water samples from a series of alpine rivers and lakes (two valleys and their rivers, an artificial pond, and a natural lake system) in Obergurgl, Austria in June 2016, July 2016, November 2016, and May 2017. Each alpine river and lake was sampled multiple times across different seasons, depending on site access during different times of the year. Water samples were filtered through a 0.22 μm membrane filter to separate microbial INPs from the water, and both fractions were analyzed for ice nucleation activity (INA) by an emulsion freezing method. Microorganisms were cultured from the filters, and the cultures then analyzed for INA. Portions of the filtered samples were concentrated by lyophilization to observe potential enhancement of INA. Two sediment samples were taken as reference points for inorganic INPs. Sub-micron INPs were observed in all of the alpine water sources studied, and a seasonal shift to a higher fraction of microbial ice nucleators cultured on selective media was observed during the winter collections. Particles larger than 0.22 μm showed INA, and microbes were cultured from this fraction. Results from 60 samples gave evidence of a seasonal change in INA, presence of submicrometer INPs, and show the abundance of culturable microorganisms, with late spring and early summer showing the most active biological INPs. With additional future research on this topic ski resorts could make use of such knowledge of geographical and seasonal trends of microbial INPs in freshwater habitats in order to improve the production of artificial snow.
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Affiliation(s)
- Philipp Baloh
- Institute of Materials Chemistry, TU Wien, Vienna, Austria
| | - Regina Hanlon
- School of Plant and Environmental Sciences, Blacksburg, VA, USA
| | | | - Eoin Dolan
- Institute of Materials Chemistry, TU Wien, Vienna, Austria
| | | | | | - Julia Burkart
- Institute of Materials Chemistry, TU Wien, Vienna, Austria; Faculty of Physics, University of Vienna, Vienna, Austria
| | | | - David G Schmale
- School of Plant and Environmental Sciences, Blacksburg, VA, USA
| | - Hinrich Grothe
- Institute of Materials Chemistry, TU Wien, Vienna, Austria.
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27
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Ice nucleation in a Gram-positive bacterium isolated from precipitation depends on a polyketide synthase and non-ribosomal peptide synthetase. ISME JOURNAL 2021; 16:890-897. [PMID: 34689184 PMCID: PMC8857237 DOI: 10.1038/s41396-021-01140-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Revised: 09/03/2021] [Accepted: 10/05/2021] [Indexed: 11/22/2022]
Abstract
Earth’s radiation budget and frequency and intensity of precipitation are influenced by aerosols with ice nucleation activity (INA), i.e., particles that catalyze the formation of ice. Some bacteria, fungi, and pollen are among the most efficient ice nucleators but the molecular basis of INA is poorly understood in most of them. Lysinibacillus parviboronicapiens (Lp) was previously identified as the first Gram-positive bacterium with INA. INA of Lp is associated with a secreted, nanometer-sized, non-proteinaceous macromolecule or particle. Here a combination of comparative genomics, transcriptomics, and a mutant screen showed that INA in Lp depends on a type I iterative polyketide synthase and a non-ribosomal peptide synthetase (PKS-NRPS). Differential filtration in combination with gradient ultracentrifugation revealed that the product of the PKS-NRPS is associated with secreted particles of a density typical of extracellular vesicles and electron microscopy showed that these particles consist in “pearl chain”-like structures not resembling any other known bacterial structures. These findings expand our knowledge of biological INA, may be a model for INA in other organisms for which the molecular basis of INA is unknown, and present another step towards unraveling the role of microbes in atmospheric processes.
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28
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Carter-Fenk KA, Dommer AC, Fiamingo ME, Kim J, Amaro RE, Allen HC. Calcium bridging drives polysaccharide co-adsorption to a proxy sea surface microlayer. Phys Chem Chem Phys 2021; 23:16401-16416. [PMID: 34318808 DOI: 10.1039/d1cp01407b] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Saccharides comprise a significant mass fraction of organic carbon in sea spray aerosol (SSA), but the mechanisms through which saccharides are transferred from seawater to the ocean surface and eventually into SSA are unclear. It is hypothesized that saccharides cooperatively adsorb to other insoluble organic matter at the air/sea interface, known as the sea surface microlayer (SSML). Using a combination of surface-sensitive infrared reflection-absorption spectroscopy and all-atom molecular dynamics simulations, we demonstrate that the marine-relevant, anionic polysaccharide alginate co-adsorbs to an insoluble palmitic acid monolayer via divalent cationic bridging interactions. Ca2+ induces the greatest extent of alginate co-adsorption to the monolayer, evidenced by the ∼30% increase in surface coverage, whereas Mg2+ only facilitates one-third the extent of co-adsorption at seawater-relevant cation concentrations due to its strong hydration propensity. Na+ cations alone do not facilitate alginate co-adsorption, and palmitic acid protonation hinders the formation of divalent cationic bridges between the palmitate and alginate carboxylate moieties. Alginate co-adsorption is largely confined to the interfacial region beneath the monolayer headgroups, so surface pressure, and thus monolayer surface coverage, only changes the amount of alginate co-adsorption by less than 5%. Our results provide physical and molecular characterization of a potentially significant polysaccharide enrichment mechanism within the SSML.
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Affiliation(s)
- Kimberly A Carter-Fenk
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210, USA.
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29
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Ice Nucleation Activity of Alpine Bioaerosol Emitted in Vicinity of a Birch Forest. ATMOSPHERE 2021. [DOI: 10.3390/atmos12060779] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
In alpine environments, many plants, bacteria, and fungi contain ice nuclei (IN) that control freezing events, providing survival benefits. Once airborne, IN could trigger ice nucleation in cloud droplets, influencing the radiation budget and the hydrological cycle. To estimate the atmospheric relevance of alpine IN, investigations near emission sources are inevitable. In this study, we collected 14 aerosol samples over three days in August 2019 at a single site in the Austrian Alps, close to a forest of silver birches, which are known to release IN from their surface. Samples were taken during and after rainfall, as possible trigger of aerosol emission by an impactor and impinger at the ground level. In addition, we collected aerosol samples above the canopy using a rotary wing drone. Samples were analyzed for ice nucleation activity, and bioaerosols were characterized based on morphology and auto-fluorescence using microscopic techniques. We found high concentrations of IN below the canopy, with a freezing behavior similar to birch extracts. Sampled particles showed auto-fluorescent characteristics and the morphology strongly suggested the presence of cellular material. Moreover, some particles appeared to be coated with an organic film. To our knowledge, this is the first investigation of aerosol emission sources in alpine vegetation with a focus on birches.
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30
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Georgiou P, Marton HL, Baker AN, Congdon TR, Whale TF, Gibson MI. Polymer Self-Assembly Induced Enhancement of Ice Recrystallization Inhibition. J Am Chem Soc 2021; 143:7449-7461. [PMID: 33944551 PMCID: PMC8154521 DOI: 10.1021/jacs.1c01963] [Citation(s) in RCA: 46] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Indexed: 02/07/2023]
Abstract
Ice binding proteins modulate ice nucleation/growth and have huge (bio)technological potential. There are few synthetic materials that reproduce their function, and rational design is challenging due to the outstanding questions about the mechanisms of ice binding, including whether ice binding is essential to reproduce all their macroscopic properties. Here we report that nanoparticles obtained by polymerization-induced self-assembly (PISA) inhibit ice recrystallization (IRI) despite their constituent polymers having no apparent activity. Poly(ethylene glycol), poly(dimethylacrylamide), and poly(vinylpyrrolidone) coronas were all IRI-active when assembled into nanoparticles. Different core-forming blocks were also screened, revealing the core chemistry had no effect. These observations show ice binding domains are not essential for macroscopic IRI activity and suggest that the size, and crowding, of polymers may increase the IRI activity of "non-active" polymers. It was also discovered that poly(vinylpyrrolidone) particles had ice crystal shaping activity, indicating this polymer can engage ice crystal surfaces, even though on its own it does not show any appreciable ice recrystallization inhibition. Larger (vesicle) nanoparticles are shown to have higher ice recrystallization inhibition activity compared to smaller (sphere) particles, whereas ice nucleation activity was not found for any material. This shows that assembly into larger structures can increase IRI activity and that increasing the "size" of an IRI does not always lead to ice nucleation. This nanoparticle approach offers a platform toward ice-controlling soft materials and insight into how IRI activity scales with molecular size of additives.
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Affiliation(s)
- Panagiotis
G. Georgiou
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, CV4 7AL Coventry, U.K.
| | - Huba L. Marton
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, CV4 7AL Coventry, U.K.
| | - Alexander N. Baker
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, CV4 7AL Coventry, U.K.
| | - Thomas R. Congdon
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, CV4 7AL Coventry, U.K.
| | - Thomas F. Whale
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, CV4 7AL Coventry, U.K.
| | - Matthew I. Gibson
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, CV4 7AL Coventry, U.K.
- Warwick
Medical School, University of Warwick, Gibbet Hill Road, CV4 7AL Coventry, U.K.
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31
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Sun T, Ben-Amotz D, Wyslouzil BE. The freezing behavior of aqueous n-alcohol nanodroplets. Phys Chem Chem Phys 2021; 23:9991-10005. [PMID: 33870962 DOI: 10.1039/d0cp06131j] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We generate water-rich aerosols containing 1-propanol and 1-pentanol in a supersonic nozzle to study the effects of these solutes on the freezing behavior of water. Condensation and freezing are characterized by two complementary techniques, pressure trace measurements and Fourier Transform Infrared spectroscopy. When 1-pentanol and 1-propanol are present, condensation occurs at higher temperatures because particle formation from the vapor phase is enhanced by the decrease in interfacial free energy of mixed aqueous-alcohol critical clusters relative to those of pure water. FTIR results suggest that when ∼6 nm radius droplets freeze, the tetrahedral structure of the ice is well preserved up to an overall alcohol mole fraction of 0.031 for 1-propanol and 0.043 for 1-pentanol. In this concentration range, the ice nucleation temperature decreases continuously with increasing 1-propanol concentration, whereas the onset of freezing is not significantly perturbed by 1-pentanol up to a mole fraction of 0.03. Furthermore, once freezing starts the ice nucleation rates in the aqueous-alcohol droplets are very close to those for pure water. In contrast, at the highest mole fractions of either alcohol it is not clear whether droplets freeze to form crystalline ice since the final state of the particles cannot be adequately characterized with the available experimental techniques.
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Affiliation(s)
- Tong Sun
- William G. Lowrie Department of Chemical and Biomolecular Engineering, The Ohio State University, Columbus, OH 43210, USA.
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32
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Arya M, Prakash S, Sougrakpam Y, Deswal R. Brassica juncea leaf cuticle proteome analysis shows myrosinase protein, antifreeze activity, and post-translationally modified secretory proteins. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 161:234-247. [PMID: 33647583 DOI: 10.1016/j.plaphy.2021.02.012] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Accepted: 02/11/2021] [Indexed: 06/12/2023]
Abstract
Plant cuticle, the site of perception of stress signals, is an extracellular hydrophobic barrier that covers the epidermis of the above-ground parts. This lipidic layer has been explored for its cutin and wax composition. However, reports on the cuticle proteins are scanty. Therefore, leaf cuticle proteins of Brassica juncea isolated using organic solvents (chloroform-methanol, 2:1(v/v)) were analyzed using gel based and quantitative shotgun proteomics. Out of 615 proteins identified, 27% (169) had signal peptides supporting extracellular localization. Bioinformatics tool, QuickGO predicted the involvement of these proteins in catabolism (21%), peptidase activity (13%), oxidoreductase (12%), defense response (9%), fatty acid binding (9%), nutrient reservoir activity (8%), chitin binding (7%) and lipid transport (2%). Myrosinase-catalyzed glucosinolate hydrolysis releases bioactive compounds, which contribute to plant defense. This system is termed as "mustard oil bomb". Myrosinase and its associating protein, GDSL esterase/lipase ESM1 (involved in cuticle structuring and defense) were detected in the cuticle. GDSL-esterase/lipase ESM1 and β-glucanase (an antifreeze protein) showed in vitro activity. Analysis of cuticle extract by nanoliter osmometer-phase contrast microscopy detected antifreeze activity due to non-protein component. Post-translational modification analysis using PTM viewer predicted N-glycosylation (66%), N-terminal proteolysis (40%), and phosphorylation (32%) to be the dominant modification in the classical secretory proteins. N-glycosylation of myrosinase and GDSL esterase/lipase, ESM1 was confirmed by Con A affinoblotting. This study not only identified leaf cuticle proteins, but also laid the foundation for exploring the extracellular glucosinolate-myrosinase system, PTM crosstalk, and antifreeze activity as stress adaptive strategies in B. juncea.
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Affiliation(s)
- Meenakshi Arya
- Molecular Physiology and Proteomics Laboratory, Department of Botany, University of Delhi, Delhi, 110007, India.
| | - Satya Prakash
- Molecular Physiology and Proteomics Laboratory, Department of Botany, University of Delhi, Delhi, 110007, India.
| | - Yaiphabi Sougrakpam
- Molecular Physiology and Proteomics Laboratory, Department of Botany, University of Delhi, Delhi, 110007, India.
| | - Renu Deswal
- Molecular Physiology and Proteomics Laboratory, Department of Botany, University of Delhi, Delhi, 110007, India.
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33
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Xi Y, Mercier A, Kuang C, Yun J, Christy A, Melo L, Maldonado MT, Raymond JA, Bertram AK. Concentrations and properties of ice nucleating substances in exudates from Antarctic sea-ice diatoms. ENVIRONMENTAL SCIENCE. PROCESSES & IMPACTS 2021; 23:323-334. [PMID: 33464270 DOI: 10.1039/d0em00398k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The ocean contains ice nucleating substances (INSs), some of which can be emitted to the atmosphere where they can influence the formation and properties of clouds. A possible source of INSs in the ocean is exudates from sea-ice diatoms. Here we examine the concentrations and properties of INSs in supernatant samples from dense sea-ice diatom communities collected from Ross Sea and McMurdo Sound in the Antarctic. The median freezing temperatures of the samples ranged from approximately -17 to -22 °C. Based on our results and a comparison with results reported in the literature, the ice nucleating ability of exudates from sea-ice diatoms is likely not drastically different from the ice nucleating ability of exudates from temperate diatoms. The number of INSs per mass of DOC for the supernatant samples were lower than those reported previously for the sea surface microlayer and bulk sea water collected in the Arctic and Atlantic. The INSs in the supernatant sample collected from Ross Sea were not sensitive to temperatures up to 100 °C, were larger than 300 kDa, and were different from ice shaping and recrystallization inhibiting molecules present in the same sample. Possible candidates for these INSs include polysaccharide containing nanogels. The INSs in the supernatant sample collected from McMurdo Sound were sensitive to temperatures of 80 and 100 °C and were larger than 1000 kDa. Possible candidates for these INSs include protein containing nanogels.
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Affiliation(s)
- Yu Xi
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC V6T 1Z1, Canada.
| | - Alexia Mercier
- Department of Chemistry, Sorbonne University, 4 place Jussieu, 75005 Paris, France
| | - Cheng Kuang
- Department of Earth, Ocean & Atmospheric Sciences, University of British Columbia, 2020 - 2207 Main Mall, Vancouver, BC V6T 1Z4, Canada
| | - Jingwei Yun
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC V6T 1Z1, Canada.
| | - Ashton Christy
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC V6T 1Z1, Canada.
| | - Luke Melo
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC V6T 1Z1, Canada.
| | - Maria T Maldonado
- Department of Earth, Ocean & Atmospheric Sciences, University of British Columbia, 2020 - 2207 Main Mall, Vancouver, BC V6T 1Z4, Canada
| | - James A Raymond
- School of Life Sciences, University of Nevada, 4505 S. Maryland Pkwy., Las Vegas, NV89154, USA
| | - Allan K Bertram
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC V6T 1Z1, Canada.
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34
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Arai N, Fujiwara A, Wakuda M, Fujimoto T, Nambu Y, Ishii T, Matsumiya K, Matsumura Y, Kawahara H, Ogino K. Anti-freeze effect of Enoki mushroom extract on the quality preservation of frozen whipped cream. J FOOD ENG 2021. [DOI: 10.1016/j.jfoodeng.2020.110285] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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35
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Arcarons N, Vendrell-Flotats M, Yeste M, Mercade E, López-Béjar M, Mogas T. Cryoprotectant role of exopolysaccharide of Pseudomonas sp. ID1 in the vitrification of IVM cow oocytes. Reprod Fertil Dev 2020; 31:1507-1519. [PMID: 31092307 DOI: 10.1071/rd18447] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2018] [Accepted: 04/02/2019] [Indexed: 12/12/2022] Open
Abstract
Biological molecules isolated from organisms that live under subzero conditions could be used to protect oocytes from cryoinjuries suffered during cryopreservation. This study examined the cryoprotectant role of exopolysaccharides of Pseudomonas sp. ID1 (EPS ID1) in the vitrification of prepubertal and adult cow oocytes. IVM oocytes were vitrified and warmed in media supplemented with 0, 1, 10, 100 or 1000µgmL-1 EPS ID1. After warming, oocytes were fertilised and embryo development, spindle morphology and the expression of several genes in Day 8 blastocysts were assessed. Vitrification led to significantly lower proportion of prepubertal oocytes exhibiting a normal spindle configuration. In fresh control oocytes and most groups of vitrified adult oocytes, similar percentages of oocytes with a normal spindle configuration were observed. Percentages of Day 8 blastocysts were similar for prepubertal oocytes vitrified in the absence or presence of 1 or 10µgmL-1 EPS ID1 and for adult oocytes vitrified in the presence of 10µgmL-1 EPS ID1 compared with non-vitrified oocytes. EPS ID1 supplementation had no effect on solute carrier family 2 member 3 (SLC2A3), ubiquitin-conjugating enzyme E2A (UBE2A) and histone deacetylase 1 (HDAC1) expression in Day 8 blastocysts form adult oocytes. However, supplementation with 10 and 100µgmL-1 EPS ID1 led to increased expression of genes involved in epigenetic modifications (DNA methyltransferase 3 alpha (DNMT3A) and K (lysine) acetyltransferase 2A (KAT2A)) and apoptosis (BCL2 associated X apoptosis regulator (BAX) and BCL2-like 1 (BCL2L1)). The lowest BAX:BCL2L1 ratio was found in the 10µgmL-1 EPS ID1-supplemented group. The results suggest that 10µgmL-1 EPS ID1 added to vitrification and warming media may help protect bovine oocytes against cryodamage.
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Affiliation(s)
- Núria Arcarons
- Department of Animal Medicine and Surgery, Autonomous University of Barcelona, Travessera dels Turons s/n, E-08193, Cerdanyola del Vallès (Barcelona), Spain
| | - Meritxell Vendrell-Flotats
- Department of Animal Medicine and Surgery, Autonomous University of Barcelona, Travessera dels Turons s/n, E-08193, Cerdanyola del Vallès (Barcelona), Spain; and Department of Animal Health and Anatomy, Autonomous University of Barcelona, Travessera dels Turons s/n, E-08193, Cerdanyola del Vallès (Barcelona), Spain
| | - Marc Yeste
- Department of Biology, Institute of Food and Agricultural Technology, University of Girona, Girona, C/ Maria Aurèlia Campany 69, Campus Montilivi, E-17003 Girona, Spain
| | - Elena Mercade
- Department de Biology, Health and Environment, Microbiology Section, University of Barcelona, E-08028, Barcelona, Spain
| | - Manel López-Béjar
- Department of Animal Health and Anatomy, Autonomous University of Barcelona, Travessera dels Turons s/n, E-08193, Cerdanyola del Vallès (Barcelona), Spain
| | - Teresa Mogas
- Department of Animal Medicine and Surgery, Autonomous University of Barcelona, Travessera dels Turons s/n, E-08193, Cerdanyola del Vallès (Barcelona), Spain; and Corresponding author.
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36
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The contribution of black carbon to global ice nucleating particle concentrations relevant to mixed-phase clouds. Proc Natl Acad Sci U S A 2020; 117:22705-22711. [PMID: 32839319 DOI: 10.1073/pnas.2001674117] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Black carbon (BC) aerosol plays an important role in the Earth's climate system because it absorbs solar radiation and therefore potentially warms the climate; however, BC can also act as a seed for cloud particles, which may offset much of its warming potential. If BC acts as an ice nucleating particle (INP), BC could affect the lifetime, albedo, and radiative properties of clouds containing both supercooled liquid water droplets and ice particles (mixed-phase clouds). Over 40% of global BC emissions are from biomass burning; however, the ability of biomass burning BC to act as an INP in mixed-phase cloud conditions is almost entirely unconstrained. To provide these observational constraints, we measured the contribution of BC to INP concentrations ([INP]) in real-world prescribed burns and wildfires. We found that BC contributes, at most, 10% to [INP] during these burns. From this, we developed a parameterization for biomass burning BC and combined it with a BC parameterization previously used for fossil fuel emissions. Applying these parameterizations to global model output, we find that the contribution of BC to potential [INP] relevant to mixed-phase clouds is ∼5% on a global average.
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37
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Tarn MD, Sikora SNF, Porter GCE, Wyld BV, Alayof M, Reicher N, Harrison AD, Rudich Y, Shim JU, Murray BJ. On-chip analysis of atmospheric ice-nucleating particles in continuous flow. LAB ON A CHIP 2020; 20:2889-2910. [PMID: 32661539 DOI: 10.1039/d0lc00251h] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Ice-nucleating particles (INPs) are of atmospheric importance because they catalyse the freezing of supercooled cloud droplets, strongly affecting the lifetime and radiative properties of clouds. There is a need to improve our knowledge of the global distribution of INPs, their seasonal cycles and long-term trends, but our capability to make these measurements is limited. Atmospheric INP concentrations are often determined using assays involving arrays of droplets on a cold stage, but such assays are frequently limited by the number of droplets that can be analysed per experiment, often involve manual processing (e.g. pipetting of droplets), and can be susceptible to contamination. Here, we present a microfluidic platform, the LOC-NIPI (Lab-on-a-Chip Nucleation by Immersed Particle Instrument), for the generation of water-in-oil droplets and their freezing in continuous flow as they pass over a cold plate for atmospheric INP analysis. LOC-NIPI allows the user to define the number of droplets analysed by simply running the platform for as long as required. The use of small (∼100 μm diameter) droplets minimises the probability of contamination in any one droplet and therefore allows supercooling all the way down to homogeneous freezing (around -36 °C), while a temperature probe in a proxy channel provides an accurate measure of temperature without the need for temperature modelling. The platform was validated using samples of pollen extract and Snomax®, with hundreds of droplets analysed per temperature step and thousands of droplets being measured per experiment. Homogeneous freezing of purified water was studied using >10 000 droplets with temperature increments of 0.1 °C. The results were reproducible, independent of flow rate in the ranges tested, and the data compared well to conventional instrumentation and literature data. The LOC-NIPI was further benchmarked in a field campaign in the Eastern Mediterranean against other well-characterised instrumentation. The continuous flow nature of the system provides a route, with future development, to the automated monitoring of atmospheric INP at field sites around the globe.
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Affiliation(s)
- Mark D Tarn
- School of Earth and Environment, University of Leeds, Leeds, LS2 9JT, UK. and School of Physics and Astronomy, University of Leeds, Leeds, LS2 9JT, UK.
| | | | - Grace C E Porter
- School of Earth and Environment, University of Leeds, Leeds, LS2 9JT, UK. and School of Physics and Astronomy, University of Leeds, Leeds, LS2 9JT, UK.
| | - Bethany V Wyld
- School of Earth and Environment, University of Leeds, Leeds, LS2 9JT, UK.
| | - Matan Alayof
- Department of Earth and Planetary Sciences, Weizmann Institute of Science, Rehovot 76100, Israel
| | - Naama Reicher
- Department of Earth and Planetary Sciences, Weizmann Institute of Science, Rehovot 76100, Israel
| | | | - Yinon Rudich
- Department of Earth and Planetary Sciences, Weizmann Institute of Science, Rehovot 76100, Israel
| | - Jung-Uk Shim
- School of Physics and Astronomy, University of Leeds, Leeds, LS2 9JT, UK.
| | - Benjamin J Murray
- School of Earth and Environment, University of Leeds, Leeds, LS2 9JT, UK.
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38
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Schwidetzky R, Kunert AT, Bonn M, Pöschl U, Ramløv H, DeVries AL, Fröhlich-Nowoisky J, Meister K. Inhibition of Bacterial Ice Nucleators Is Not an Intrinsic Property of Antifreeze Proteins. J Phys Chem B 2020; 124:4889-4895. [PMID: 32437152 DOI: 10.1021/acs.jpcb.0c03001] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Cold-adapted organisms use antifreeze proteins (AFPs) or ice-nucleating proteins (INPs) for the survival in freezing habitats. AFPs have been reported to be able to inhibit the activity of INPs, a property that would be of great physiological relevance. The generality of this effect is not understood, and for the few known examples of INP inhibition by AFPs, the molecular mechanisms remain unclear. Here, we report a comprehensive evaluation of the effects of five different AFPs on the activity of bacterial ice nucleators using a high-throughput ice nucleation assay. We find that bacterial INPs are inhibited by certain AFPs, while others show no effect. Thus, the ability to inhibit the activity of INPs is not an intrinsic property of AFPs, and the interactions of INPs and different AFPs proceed through protein-specific rather than universal molecular mechanisms.
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Affiliation(s)
| | - Anna T Kunert
- Max Planck Institute for Chemistry, 55128 Mainz, Germany
| | - Mischa Bonn
- Max Planck Institute for Polymer Research, 55128 Mainz, Germany
| | - Ulrich Pöschl
- Max Planck Institute for Chemistry, 55128 Mainz, Germany
| | | | - Arthur L DeVries
- University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | | | - Konrad Meister
- Max Planck Institute for Polymer Research, 55128 Mainz, Germany.,University of Alaska Southeast, Juneau, Alaska 99801, United States
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39
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A Drone-Based Bioaerosol Sampling System to Monitor Ice Nucleation Particles in the Lower Atmosphere. REMOTE SENSING 2020. [DOI: 10.3390/rs12030552] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Terrestrial ecosystems can influence atmospheric processes by contributing a huge variety of biological aerosols (bioaerosols) to the environment. Several types of biological particles, such as pollen grains, fungal spores, and bacteria cells, trigger freezing processes in super-cooled cloud droplets, and as such can contribute to the hydrological cycle. Even though biogenic particles are known as the most active form of ice nucleation particles (INPs), the transport to high tropospheric altitudes, as well as the occurrence in clouds, remains understudied. Thus, transport processes from the land surface into the atmosphere need to be investigated to estimate weather phenomena and climate trends. To help fill this knowledge gap, we developed a drone-based aerosol particles sampling impinger/impactor (DAPSI) system for field studies to investigate sources and near surface transport of biological INPs. DAPSI was designed to attach to commercial rotary-wing drones to collect biological particles within about 100 m of the Earth’s surface. DAPSI provides information on particulate matter concentrations (PM10 & PM2.5), temperature, relative humidity, and air pressure at about 0.5 Hz, by controlling electrical sensors with an onboard computer (Raspberry Pi 3). Two remote-operated sampling systems (impinging and impacting) were integrated into DAPSI. Laboratory tests of the impinging system showed a 96% sampling efficiency for standardized aerosol particles (2 µm polystyrene latex spheres) and 84% for an aerosol containing biological INPs (Betula pendula). A series of sampling missions (12 flights) were performed using two Phantom 4 quadcopters with DAPSI onboard at a remote sampling site near Gosau, Austria. Fluorescence microscopy of impactor foils showed a significant number of auto-fluorescent particles < 0.5 µm at an excitation of 465–495 nm and an emission of 515–555 nm. A slight increase in ice nucleation activity (onset temperature between −27 °C and −31 °C) of sampled aerosol was measured by applying freezing experiments with a microscopic cooling technique. There are a number of unique opportunities for DAPSI to be used to study the transport of bioaerosols, particularly for investigations of biological INP emissions from natural sources such as birch or pine forests.
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40
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Stubbs C, Bailey TL, Murray K, Gibson MI. Polyampholytes as Emerging Macromolecular Cryoprotectants. Biomacromolecules 2020; 21:7-17. [PMID: 31418266 PMCID: PMC6960013 DOI: 10.1021/acs.biomac.9b01053] [Citation(s) in RCA: 55] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2019] [Revised: 08/15/2019] [Indexed: 11/29/2022]
Abstract
Cellular cryopreservation is a platform technology which underpins cell biology, biochemistry, biomaterials, diagnostics, and the cold chain for emerging cell-based therapies. This technique relies on effective methods for banking and shipping to avoid the need for continuous cell culture. The most common method to achieve cryopreservation is to use large volumes of organic solvent cryoprotective agents which can promote either a vitreous (ice free) phase or dehydrate and protect the cells. These methods are very successful but are not perfect: not all cell types can be cryopreserved and recovered, and the cells do not always retain their phenotype and function post-thaw. This Perspective will introduce polyampholytes as emerging macromolecular cryoprotective agents and demonstrate they have the potential to impact a range of fields from cell-based therapies to basic cell biology and may be able to improve, or replace, current solvent-based cryoprotective agents. Polyampholytes have been shown to be remarkable (mammalian cell) cryopreservation enhancers, but their mechanism of action is unclear, which may include membrane protection, solvent replacement, or a yet unknown protective mechanism, but it seems the modulation of ice growth (recrystallization) may only play a minor role in their function, unlike other macromolecular cryoprotectants. This Perspective will discuss their synthesis and summarize the state-of-the-art, including hypotheses of how they function, to introduce this exciting area of biomacromolecular science.
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Affiliation(s)
- Christopher Stubbs
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, United Kingdom
| | - Trisha L. Bailey
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, United Kingdom
| | - Kathryn Murray
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, United Kingdom
| | - Matthew I. Gibson
- Department
of Chemistry, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, United Kingdom
- Warwick
Medical School, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, United Kingdom
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41
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Lawler MJ, Draper DC, Smith JN. Atmospheric fungal nanoparticle bursts. SCIENCE ADVANCES 2020; 6:eaax9051. [PMID: 31998839 DOI: 10.1126/sciadv.aax9051%] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Received: 05/03/2019] [Accepted: 11/06/2019] [Indexed: 05/26/2023]
Abstract
Aerosol nanoparticles play an important role in the climate system by affecting cloud formation and properties, as well as in human health because of their deep reach into lungs and the circulatory system. Determining nanoparticle sources and composition is a major challenge in assessing their impacts in these areas. The sudden appearance of large numbers of atmospheric nanoparticles is commonly attributed to secondary formation from gas-phase precursors, but in many cases, the evidence for this is equivocal. We report the detection of a mode of fungal fragments with a mobility diameter of roughly 30 nm released in episodic bursts in ambient air over an agricultural area in northern Oklahoma. These events reached concentrations orders of magnitude higher than other reports of biological particles and show similarities to unclarified events reported previously in the Amazon. These particles potentially represent a large source of both cloud-forming ice nuclei and respirable allergens in a variety of ecosystems.
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Affiliation(s)
- Michael J Lawler
- Department of Chemistry, University of California, Irvine, Irvine, CA 92697, USA
| | - Danielle C Draper
- Department of Chemistry, University of California, Irvine, Irvine, CA 92697, USA
| | - James N Smith
- Department of Chemistry, University of California, Irvine, Irvine, CA 92697, USA
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42
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Tian Y, Zhu Z, Sun DW. Naturally sourced biosubstances for regulating freezing points in food researches: Fundamentals, current applications and future trends. Trends Food Sci Technol 2020. [DOI: 10.1016/j.tifs.2019.11.009] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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43
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Lawler MJ, Draper DC, Smith JN. Atmospheric fungal nanoparticle bursts. SCIENCE ADVANCES 2020; 6:eaax9051. [PMID: 31998839 PMCID: PMC6962048 DOI: 10.1126/sciadv.aax9051] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/03/2019] [Accepted: 11/06/2019] [Indexed: 06/10/2023]
Abstract
Aerosol nanoparticles play an important role in the climate system by affecting cloud formation and properties, as well as in human health because of their deep reach into lungs and the circulatory system. Determining nanoparticle sources and composition is a major challenge in assessing their impacts in these areas. The sudden appearance of large numbers of atmospheric nanoparticles is commonly attributed to secondary formation from gas-phase precursors, but in many cases, the evidence for this is equivocal. We report the detection of a mode of fungal fragments with a mobility diameter of roughly 30 nm released in episodic bursts in ambient air over an agricultural area in northern Oklahoma. These events reached concentrations orders of magnitude higher than other reports of biological particles and show similarities to unclarified events reported previously in the Amazon. These particles potentially represent a large source of both cloud-forming ice nuclei and respirable allergens in a variety of ecosystems.
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44
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Baloh P, Els N, David RO, Larose C, Whitmore K, Sattler B, Grothe H. Assessment of Artificial and Natural Transport Mechanisms of Ice Nucleating Particles in an Alpine Ski Resort in Obergurgl, Austria. Front Microbiol 2019; 10:2278. [PMID: 31636618 PMCID: PMC6788259 DOI: 10.3389/fmicb.2019.02278] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Accepted: 09/18/2019] [Indexed: 01/31/2023] Open
Abstract
Artificial snow production is a crucial part of modern skiing resorts in Austria and globally, and will develop even more so with changing precipitation patterns and a warming climate trend. Producing artificial snow requires major investments in energy, water, infrastructure and manpower for skiing resorts. In addition to appropriate meteorological conditions, the efficiency of artificial snow production depends on heterogeneous ice-nucleation, which can occur at temperatures as high as -2°C when induced by specific bacterial ice nucleating particles (INPs). We aimed to investigate the presence, source and ice nucleating properties of these particles in the water cycle of an alpine ski resort in Obergurgl, Tyrol, Austria. We sampled artificial snow, river water, water pumped from a storage pond and compared it to samples collected from fresh natural snow and aged piste snow from the area. Particles from each sampled system were characterized in order to determine their transport mechanisms at a ski resort. We applied a physical droplet freezing assay [DRoplet Ice Nuclei Counter Zurich (DRINCZ)] to heated and unheated samples to characterize the biological and non-biological component of IN-activity. Bacterial abundance and community structure of the samples was obtained using quantitative PCR and Illumina Mi-Seq Amplicon Sequencing, and their chemical properties were determined by liquid ion-chromatography, energy dispersive X-ray spectroscopy (EDX) and scanning electron microscopy (SEM). The results show the flow of biological and inorganic material from the river to the slopes, an uptake of new microorganisms through the air and the piping, and possible proliferation or introduction of ice nucleation active biological particles in aged piste snow. Natural snow, as the first stage in this system, had the lowest amount of ice nucleation active particles and the least amount of biological and mineral particles in general, yet shares some microbial characteristics with fresh artificial snow.
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Affiliation(s)
- Philipp Baloh
- Institute for Materials Chemistry, TU Wien, Vienna, Austria
| | - Nora Els
- Lake and Glacier Research Group, Institute of Ecology, University of Innsbruck, Innsbruck, Austria
| | - Robert O David
- Institute for Atmospheric and Climate Science, ETH Zürich, Zurich, Switzerland
| | - Catherine Larose
- Laboratoire Ampère, Environmental Microbial Genomics, École Centrale de Lyon, Université de Lyon, Écully, France
| | - Karin Whitmore
- University Service Center for Transmission Electron Microscopy, TU Wien, Vienna, Austria
| | - Birgit Sattler
- Lake and Glacier Research Group, Institute of Ecology, University of Innsbruck, Innsbruck, Austria
| | - Hinrich Grothe
- Institute for Materials Chemistry, TU Wien, Vienna, Austria
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45
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Kim EJ, Kim JE, Hwang JS, Kim IC, Lee SG, Kim S, Lee JH, Han SJ. Increased Productivity and Antifreeze Activity of Ice-binding Protein from Flavobacterium frigoris PS1 Produced using Escherichia coli as Bioreactor. APPL BIOCHEM MICRO+ 2019. [DOI: 10.1134/s0003683819050077] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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46
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Ice Nucleation Properties of Ice-binding Proteins from Snow Fleas. Biomolecules 2019; 9:biom9100532. [PMID: 31557956 PMCID: PMC6843771 DOI: 10.3390/biom9100532] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2019] [Revised: 09/15/2019] [Accepted: 09/19/2019] [Indexed: 01/11/2023] Open
Abstract
Ice-binding proteins (IBPs) are found in many organisms, such as fish and hexapods, plants, and bacteria that need to cope with low temperatures. Ice nucleation and thermal hysteresis are two attributes of IBPs. While ice nucleation is promoted by large proteins, known as ice nucleating proteins, the smaller IBPs, referred to as antifreeze proteins (AFPs), inhibit the growth of ice crystals by up to several degrees below the melting point, resulting in a thermal hysteresis (TH) gap between melting and ice growth. Recently, we showed that the nucleation capacity of two types of IBPs corresponds to their size, in agreement with classical nucleation theory. Here, we expand this finding to additional IBPs that we isolated from snow fleas (the arthropod Collembola), collected in northern Israel. Chemical analyses using circular dichroism and Fourier-transform infrared spectroscopy data suggest that these IBPs have a similar structure to a previously reported snow flea antifreeze protein. Further experiments reveal that the ice-shell purified proteins have hyperactive antifreeze properties, as determined by nanoliter osmometry, and also exhibit low ice-nucleation activity in accordance with their size.
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47
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Eickhoff L, Dreischmeier K, Zipori A, Sirotinskaya V, Adar C, Reicher N, Braslavsky I, Rudich Y, Koop T. Contrasting Behavior of Antifreeze Proteins: Ice Growth Inhibitors and Ice Nucleation Promoters. J Phys Chem Lett 2019; 10:966-972. [PMID: 30742446 DOI: 10.1021/acs.jpclett.8b03719] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Several types of natural molecules interact specifically with ice crystals. Small antifreeze proteins (AFPs) adsorb to particular facets of ice crystals, thus inhibiting their growth, whereas larger ice-nucleating proteins (INPs) can trigger the formation of new ice crystals at temperatures much higher than the homogeneous ice nucleation temperature of pure water. It has been proposed that both types of proteins interact similarly with ice and that, in principle, they may be able to exhibit both functions. Here we investigated two naturally occurring antifreeze proteins, one from fish, type-III AFP, and one from beetles, TmAFP. We show that in addition to ice growth inhibition, both can also trigger ice nucleation above the homogeneous freezing temperature, providing unambiguous experimental proof for their contrasting behavior. Our analysis suggests that the predominant difference between AFPs and INPs is their molecular size, which is a very good predictor of their ice nucleation temperature.
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Affiliation(s)
- Lukas Eickhoff
- Bielefeld University , Faculty of Chemistry , D-33615 Bielefeld , Germany
| | | | - Assaf Zipori
- The Weizmann Institute of Science , Department of Earth and Planetary Sciences , Rehovot 7610001 , Israel
| | - Vera Sirotinskaya
- The Hebrew University of Jerusalem , Robert H. Smith Faculty of Agriculture, Food and Environment, Institute of Biochemistry, Food Science and Nutrition , Rehovot 7610001 , Israel
| | - Chen Adar
- The Hebrew University of Jerusalem , Robert H. Smith Faculty of Agriculture, Food and Environment, Institute of Biochemistry, Food Science and Nutrition , Rehovot 7610001 , Israel
| | - Naama Reicher
- The Weizmann Institute of Science , Department of Earth and Planetary Sciences , Rehovot 7610001 , Israel
| | - Ido Braslavsky
- The Hebrew University of Jerusalem , Robert H. Smith Faculty of Agriculture, Food and Environment, Institute of Biochemistry, Food Science and Nutrition , Rehovot 7610001 , Israel
| | - Yinon Rudich
- The Weizmann Institute of Science , Department of Earth and Planetary Sciences , Rehovot 7610001 , Israel
| | - Thomas Koop
- Bielefeld University , Faculty of Chemistry , D-33615 Bielefeld , Germany
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48
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Ice recrystallization is strongly inhibited when antifreeze proteins bind to multiple ice planes. Sci Rep 2019; 9:2212. [PMID: 30760774 PMCID: PMC6374469 DOI: 10.1038/s41598-018-36546-2] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Accepted: 11/23/2018] [Indexed: 02/07/2023] Open
Abstract
Ice recrystallization is a phenomenon observed as the increase in ice crystal size within an already frozen material. Antifreeze proteins (AFPs), a class of proteins capable of arresting ice crystal growth, are known to inhibit this phenomenon even at sub milli-molar concentrations. A tremendous range in the possible applications of AFPs is hence expected in both medical and industrial fields, while a key determinant of the ice recrystallization inhibition (IRI) is hardly understood. Here, IRI efficiency and ice plane affinity were examined for the wild-type AFPI–III, a defective AFPIII isoform, and a fungal AFP isoform. To simplify the IRI analysis using the formal representation of Ostwald-ripening (r3 = r03 + kt), we monitored specific ice grains exhibiting only uniform growth, for which maximum Feret diameter was measured. The cube of an ice grain’s radius (r3) increased proportionately with time (t), and its slope gave the recrystallization rate (k). There was a significant difference in the IRI efficiency between the samples, and the fungal AFP possessing the activity with the smallest amount (0.27 μM) exhibited an affinity to multiple ice planes. These results suggest that the IRI efficiency is maximized when AFPs bind to a whole set of ice planes.
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49
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Heterogeneous Freezing of Liquid Suspensions Including Juices and Extracts from Berries and Leaves from Perennial Plants. ATMOSPHERE 2019. [DOI: 10.3390/atmos10010037] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Heterogeneous ice nucleation in the atmosphere is not fully understood. In particular, our knowledge of biological materials and their atmospheric ice nucleation properties remains scarce. Here, we present the results from systematic investigations of the ice nucleation activity of plant materials using cryo-microscopy. We examined berry juices, frozen berries, as well as extracts of leaves and dried berries of plants native to boreal regions. All of our samples possess reasonable ice nucleation activity. Their ice nucleating particle concentrations per unit of water volume vary between 9.7 × 105 and 9.2 × 109 cm−3 when examined within temperatures of −12 to −34 °C. Mean freezing temperatures ranged from −18.5 to −45.6 °C. We show that all samples contained ice nuclei in a size range below 0.2 µm and remain active if separated from coarse plant tissue. The results of examining ice nucleation properties of leaves and dry berry extracts suggests that their ice-nucleating components can be easily suspended in water. Sea buckthorn and black currant were analyzed using subtilisin (a protease) and urea. Results suggest proteinaceous compounds to play an important role in their ice nucleation activity. These results show that separation between ice nucleation particles stemming from microorganisms and those stemming from plants cannot be differentiated solely on proteinaceous features. Further oxidation experiments with ozone showed that black currant is highly stable towards ozone oxidation, indicating a long atmospheric life time.
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50
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Stubbs C, Congdon TR, Gibson MI. Photo-polymerisation and study of the ice recrystallisation inhibition of hydrophobically modified poly(vinyl pyrrolidone) co-polymers. Eur Polym J 2019. [DOI: 10.1016/j.eurpolymj.2018.11.047] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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