Chronic and intensive bottom trawling impairs deep-sea biodiversity and ecosystem functioning

Challenges in expert ratings of marine habitat and species sensitivity to anthropogenic pressures

Expert knowledge can help fill gaps in quantitative empirical information about complex ecological phenomena. We examined the level of agreement between 21 studies that collected expert ratings of the sensitivity of species and habitats to human activities and their pressures as input data for mapping the human impact on marine ecosystems. Our analyses revealed broad agreement about which human activities and pressures many species and habitats are sensitive to. These agreements reflect a common view of the main threats to ocean ecosystems. In contrast, scores provided by individual experts varied both within and across studies. Sensitivity scores collected with the same method for different regions were often more similar than scores collected for the same region but with different methods. These results highlight how inconsistencies in the design of many expert surveys can lead to variable outcomes. It is important to employ more consistent and theoretically grounded methods and protocols when eliciting expert ratings of species' sensitivity to pressures, to ensure compatibility across studies and maintain rigour in analyses supporting effective ocean management.

Assessing the success of marine ecosystem restoration using meta-analysis

Marine ecosystem restoration success stories are needed to incentivize society and private enterprises to build capacity and stimulate investments. Yet, we still must demonstrate that restoration efforts can effectively contribute to achieving the targets set by the UN Decade on Ecosystem Restoration. Here, we conduct a meta-analysis on 764 active restoration interventions across a wide range of marine habitats worldwide. We show that marine ecosystem restorations have an average success of ~64% and that they are: viable for a large variety of marine habitats, including deep-sea ecosystems; highly successful for saltmarshes, tropical coral reefs and habitat-forming species such as animal forests; successful at all spatial scales, so that restoration over large spatial scales can be done using multiple interventions at small-spatial scales that better represent the natural variability, and scalable through dedicated policies, regulations, and financing instruments. Restoration interventions were surprisingly effective even in areas where human impacts persisted, demonstrating that successful restorations can be initiated before all stressors have been removed. These results demonstrate the immediate feasibility of a global 'blue restoration' plan even for deep-sea ecosystems, enabled by increasing availability of new and cost-effective technologies.

Tracking bottom-fishing activities in protected vulnerable marine ecosystem areas and below 800-m depth in European Union waters

Numerous studies have highlighted bottom-contact fishing gears as the primary threat to vulnerable marine ecosystems (VMEs). In November 2022, the European Commission closed 87 VME protection polygons to bottom fishing in European waters. Using public automatic identification system (AIS) data, we found an 81% decrease in bottom-contact fishing effort within these areas in the year following the closures. However, approximately 3500 hours of bottom-contact fishing persisted within the closures. We also quantified up to 17,600 hours of bottom-contact fishing in unprotected areas where VMEs are known or likely to occur. Last, our analysis revealed ongoing bottom trawling below 800 meters in European waters totaling 19,200 hours over 2 years. These findings underscore the urgent need for states to enhance surveillance and monitoring of their fleets to ensure effective fisheries management.

Environmental drivers of fish bycatch composition in small-scale shrimp trawling along the southern Brazilian coast

Small-scale shrimp trawling is crucial for the economy and culture of coastal communities worldwide, providing several ecosystem services. However, bottom trawling is well-known for its negative impacts on habitat structure and marine communities. Bycatch, or the accidental capture of non-target species during fishing, can offer valuable insights into the composition and variation of fish assemblages. This study was conducted between 2009 and 2010 and focuses on the Barra do Sul, Penha, and Porto Belo areas, which are traditionally used for artisanal shrimp fishing. We evaluated the variation in the composition of fish species caught as accompanying fauna, as well as the influence of environmental variables on the associated fish assemblages. The results indicate that differences in species composition were more pronounced spatially than temporally, suggesting that the structural characteristics and environmental filters of different study areas play a crucial role in shaping marine fish bycatch assemblages. Porto Belo showed higher abundance, biomass, and diversity, likely due to its greater substrate heterogeneity and habitat complexity, which promote higher environmental quality and species richness. The gam models used for abundance and diversity confirm the complexity of ecological interactions and highlight that depth, salinity, temperature, chlorophyll a and nutrient concentration (NO2 and PO43-) were key environmental variables in determining the abundance and diversity of fish assemblages, indicating that the response of these communities to environmental variations is influenced by a specific combination of these factors. Additionally, species from the Sciaenidae and Paralichthyidae families were identified as significant contributors to the variation in fish communities. The presence of threatened species, such as Zapteryx brevirostris and Atlantoraja cyclophora, in the bycatch is particularly concerning for conservation efforts. Finally, our findings emphasize the importance of implementing management strategies tailored to local environmental conditions and protecting endangered species to promote sustainable management of marine resources and mitigate the impacts of trawling on a global scale.

Microplastics impair extracellular enzymatic activities and organic matter cycling in oligotrophic sandy marine sediments

Microplastics (MPs) are ubiquitous and constantly accumulating in the marine environment, especially sediments. Yet, it is not well clarified if and how their carbon backbone could interact with surrounding sediments, eventually impairing key benthic processes. We assessed the effects of a 'pulse' contamination event of MPs on sedimentary organic matter (OM) quantity, quality and extracellular enzymatic activities (EEAs), which are well established descriptors of benthic ecosystem functioning. Marine sediments were exposed for 30 days to environmentally relevant concentrations (∼0.2 % in weight) of naturally weathered particles (size range 70-210 μm) of polyurethane, polyethylene, and a mixture of the most common polymers that are documented to accumulate in marine sediments. Despite the low concentration, contaminated sediments showed significantly different composition of OM, showing a decrease in lipid content and increase in protein. Moreover, we document a significant decrease (over 25 %) in quantity of biopolymeric C already after 15 days of exposure, compared to controls. Contaminated sediments showed lower C degradation rates (up to -40 %) and altered EEAs, with alkaline phosphatase being ∼50 % enhanced and aminopeptidase being reduced over 35 % compared to control treatments. Overall, the effects generated by the mixture of polymers were smaller than those exerted by the same amount of a single polymer. Our results provide insights on how that MPs can significantly alter marine sedimentary biogeochemistry through altered benthic processes, that could cumulatively impair whole benthic trophic webs by enhancing the accumulation and possible longer-term storage of recalcitrant organic C in the seabed.

Streamlining large-scale oceanic biomonitoring using passive eDNA samplers integrated into vessel's continuous pump underway seawater systems

Passive samplers are enabling the scaling of environmental DNA (eDNA) biomonitoring in our oceans, by circumventing the time-consuming process of water filtration. Designing a novel passive sampler that does not require extensive sample handling time and can be connected to ocean-going vessels without impeding normal underway activities has potential to rapidly upscale global biomonitoring efforts onboard the world's oceanic fleet. Here, we demonstrate the utility of an artificial sponge sampler connected to the continuous pump underway seawater system as a means to enable oceanic biomonitoring. We compared the performance of this passive sampling protocol with standard water filtration at six locations during a research voyage from New Zealand to Antarctica in early 2023. Eukaryote metabarcoding of the mitochondrial COI gene revealed no significant difference in phylogenetic α-diversity between sampling methods and both methods delineated a progressive reduction in number of Zero-Radius Operational Taxonomic Units (ZOTUs) with increased latitudes. While both sampling methods revealed comparable trends in geographical community compositions, distinct clusters were identified for passive samplers and water filtration at each location. Additionally, greater variability between replicates was observed for passive samplers, resulting in an increased estimated level of replication needed to recover 90 % of the biodiversity. Furthermore, traditional water filtration failed to detect three phyla observed by passive samplers and extrapolation analysis estimated passive samplers recover a larger number of ZOTUs compared to water filtration for all six locations. Our results demonstrate the potential of this passive eDNA sampler protocol and highlight areas where this emerging technology could be improved, thereby enabling large-scale offshore marine eDNA biomonitoring by leveraging the world's oceanic fleet without interfering with onboard activities.

Erosion of fish trophic position: an indirect effect of fishing on food webs elucidated by stable isotopes

Fishing has significant trophodynamic impacts on marine communities, including reductions in the mean trophic position (TP) of the ecosystem resulting from a decrease in the abundance and size of species and individuals with high TPs. This study demonstrates the erosion of fish TP, an additional process that results in lower TP of individuals of a given size, which may exacerbate the effects of fishing on the food web. A stable isotope approach based on the tRophicPosition Bayesian method was used to quantify the TP of 12 target marine species at a given length, and compare their TP between fishery-restricted areas and trawled areas. The results show a difference in the TP of six benthic and apical nekto-benthic predators, which feed in the median at about 0.5 TP lower in trawled areas. It appears that current 'fishing down marine food webs' analyses may underestimate the trophic effects of fishing. Accounting for changes in trophodynamics of individuals at a given size is important to detect indirect effects through food web interactions. The application of a trawling ban may lead to the restoration of lost trophic structure; however, trophic changes may occur more slowly than changes in biomass. This article is part of the theme issue 'Connected interactions: enriching food web research by spatial and social interactions'.

Occurrence of Seahorses Hippocampus spp. in the Southernmost Part of Western Europe: A New Maximum Depth Record

Achieving sustainable resource use is a priority to meet future challenges. The Gulf of Cádiz, located in the Atlantic waters of southern Europe, is home to a significant fishing fleet due to the richness and diversity of its ecosystems. Managing this area is complex due to the diversity of variables, including social, ecological, and oceanographic factors. Therefore, multidisciplinary approaches are proposed for implementing conservation strategies. One strategy for defining area-based management measures is through the use of flagship species, such as seahorses. These emblematic animals can assist in defining such measures. However, there is currently scarce information on the occurrence of seahorses in the Gulf of Cádiz. In this study, we present the first occurrence data of two species of the genus Hippocampus (H. hippocampus and H. guttulatus) in this area. The Gulf of Cádiz is not only described as the southernmost region of their distribution in continental Europe, but it is also a significant landmark for the genus Hippocampus, as one adult was captured at a depth of up to 101 m. Five management areas based on differentiated benthic habitats are proposed. We believe that our study has the potential to significantly improve conservation of seahorses and induce a positive impact on the ecosystem.

Effects of bottom trawling and environmental factors on benthic bacteria, meiofauna and macrofauna communities and benthic ecosystem processes

Soft sediment marine benthic ecosystems comprise a diverse community of bacteria, meiofauna and macrofauna, which together support a range of ecosystem processes such as biogeochemical cycling. These ecosystems are also fishing grounds for demersal species that are often caught using bottom trawling. This fishing method can have deleterious effects on benthic communities by causing injury or mortality, and through alteration of sediment properties that in turn influence community structure. Although the impacts of bottom trawling on macrofauna are relatively well studied, less is known about the responses of meiofauna and bacteria to such disturbances, or how bottom trawling impacts benthic ecosystem processes. Quantifying trawling impacts against a background of natural environmental variability is also a challenge. To address these questions, we examined effects of bottom trawling and a range of environmental variables (e.g. water chemistry and physical and biochemical surface sediment properties) on a) bacterial, meiofaunal and macrofaunal community structure and b) benthic ecosystem processes (nutrient fluxes, extracellular enzyme activities and carbon turnover and degradation rates). We also investigated the link between the benthic macrofauna community and the same ecosystem processes. While there was a significant effect of bottom trawling intensity on macrofaunal community structure, the same was not seen for bacterial or meiofaunal community composition, which were more affected by environmental factors, such as surface sediment properties. The labile component of the surface sediment carbon pool was higher at highly trawled sites. Carbon degradation rates, extracellular enzyme activities, oxygen fluxes and some nutrient fluxes were significantly affected by trawling, but ecosystem processes were also strongly linked to the abundance of key bioturbators (Macoma balthica, Halicryptus spinulosus, Scoloplos armiger and Pontoporeia femorata). Although benthic ecosystems were affected by a combination of trawling and natural variability, disentangling these showed that the anthropogenic effects were clearest on the larger component of the community, i.e. macrofauna composition, and on ecosystem processes related to sedimentary carbon.

Environmental DNA metabarcoding reveals the effects of seafloor litter and trawling on marine biodiversity

Environmental DNA (eDNA) techniques are emerging as promising tools for monitoring marine communities. However, they have not been applied to study the integrated effects of anthropogenic pressures on marine biodiversity. This study examined the relationships between demersal community species composition, key environmental features, and anthropogenic impacts such as fishing effort and seafloor litter using eDNA data in the central Tyrrhenian Sea. The results indicated that both fishing effort and seafloor litter influenced species composition and diversity. The adaptive traits of marine species played a critical role in their response to debris accumulation and fishing. Mobile species appeared to use relocation strategies, while sessile species showed flexibility in the face of disturbance. Epibiotic species relied on passive transport. The use of eDNA-based methods is a valuable resource for monitoring anthropogenic impacts during scientific surveys, enhancing our ability to monitor marine ecosystems and more effectively assess the effects of pollution.

Mapping the habitat refugia of Isidella elongata under climate change and trawling impacts to preserve Vulnerable Marine Ecosystems in the Mediterranean

The bamboo-coral Isidella elongata is a key habitat-forming species in the deep Mediterranean Sea. This alcyonacean is listed as an indicator of Vulnerable Marine Ecosystems (VMEs) and as Critically Endangered due to bottom trawling impacts. In this work, a modeling approach was used to predict and map the habitat suitability of I. elongata in the Mediterranean Sea under current environmental conditions. Occurrence data were modeled as a function of environmental parameters. Using climate change scenarios and fishing effort data, the risk of climate change and fisheries impacts on habitat suitability were estimated, and climate refugia were identified. A drastic loss of habitat is predicted, and climate change scenarios suggest a loss of 60% of suitable habitats by 2100. In the central Mediterranean, climate refugia overlapped with active fishing grounds. This study represents the first attempt to identify hot spots for the protection of soft bottom Vulnerable Marine Ecosystems for the entire Mediterranean Sea, and highlights areas most at risk from trawling. This work is relevant to the objectives of the EU Marine Strategy Framework and Maritime Spatial Planning Directives, the Biodiversity Strategy for 2030 regarding priority areas for conservation.

What, where, and when: Spatial-temporal distribution of macro-litter on the seafloor of the western and central Mediterranean sea

The progressive increase of marine macro-litter on the bottom of the Mediterranean Sea is an urgent problem that needs accurate information and guidance to identify those areas most at risk of accumulation. In the absence of dedicated monitoring programs, an important source of opportunistic data is fishery-independent monitoring campaigns of demersal resources. These data have long been used but not yet extensively. In this paper, MEDiterranean International Trawl Survey (MEDITS) data was supplemented with 18 layers of information related to major environmental (e.g. depth, sea water and wind velocity, sea waves) and anthropogenic (e.g. river inputs, shipping lanes, urban areas and ports, fishing effort) forcings that influence seafloor macro-litter distribution. The Random Forest (RF), a machine learning approach, was applied to: i) model the distribution of several litter categories at a high spatial resolution (i.e. 1 km2); ii) identify major accumulation hot spots and their temporal trends. Results indicate that RF is a very effective approach to model the distribution of marine macro-litter and provides a consistent picture of the heterogeneous distribution of different macro-litter categories. The most critical situation in the study area was observed in the north-eastern part of the western basin. In addition, the combined analysis of weight and density data identified a tendency for lighter items to accumulate in areas (such as the northern part of the Tyrrhenian Sea) with more stagnant currents. This approach, based on georeferenced information widely available in public databases, seems a natural candidate to be applied in other basins as a support and complement tool to field monitoring activities and strategies for protection and remediation of the most impacted areas.

Effects of acidification on the biogeochemistry of unvegetated and seagrass marine sediments

Many studies addressed ocean acidification (OA) effects on marine life, whereas its effects on sedimentary organic matter (OM) have received less attention. We investigated differences in OM features in sediments from unvegetated and seagrass (Posidonia oceanica) beds in a shallow hydrothermal area (Aeolian Archipelago, Mediterranean Sea), under natural (8.1-8.0) and acidified (7.8-7.9) conditions. We show that a pH difference of -0.3 units have minor effects on OM features in unvegetated sediments, but relevant consequences within acidified seagrass meadows, where OM quantity and nutritional quality are lower than those under natural pH conditions. Effects of acidified conditions on OM biogeochemistry vary between unvegetated and seagrass sediments, with lower C degradation rates and longer C turnover time in the former than in the latter. We conclude that OA, although with effects not consistent between unvegetated and vegetated sediments, can affect OM quantity, composition, and degradation, thus having possible far-reaching consequences for benthic trophic webs.

Bottom-trawling signals lost in sediment: A combined biogeochemical and modeling approach to early diagenesis in a perturbed coastal area of the southern Baltic Sea

Trawl-fishing is broadly considered to be one of the most destructive anthropogenic activities toward benthic ecosystems. In this study, we examine the effects of bottom-contact fishing by otter trawls on the geochemistry and macrofauna in sandy silt sediment in an area of the Baltic Sea where clear spatial patterns in trawling activity were previously identified by acoustic mapping. We calibrated an early diagenetic model to biogeochemical data from various coring locations. Fitting measured mercury profiles allowed for the determination of the sediment mixing and burial velocity. For all sites, independent of the trawl mark density, good fits were obtained by applying the model with the same organic matter loading and parameter values, while iron fluxes scaled linearly with the burial velocity. A sensitivity analysis revealed that the fitted sulfate reduction rate, solid sulfur contents, ammonium concentration, and both the isotopic composition and concentration of dissolved inorganic carbon provided reliable constraints for the total mineralization rate, which exhibited a narrow range of variability (around ±20 % from the mean) across the sites. Also, the trawling intensity did not significantly correlate with total organic carbon contents in surficial sediment, indicating limited loss of organic matter due to trawling. The fits to the reactive iron, acid volatile sulfur, chromium(II) reducible sulfur contents, and porewater composition demonstrate that sediment burial and mixing primarily determine the redox stratification. The mixing depth did not correlate with trawling intensity and is more likely the result of bioturbation, as the analyzed macrofaunal taxonomy and density showed a high potential for sediment reworking. The extraordinarily long-lived Arctica islandica bivalve dominated the infaunal biomass, despite the expectation that trawling leads to the succession from longer-lived to shorter-lived and bigger to smaller macrofauna. Our results further suggest that a clear geochemical footprint of bottom-trawling may not develop in sediments actively reworked by tenacious macrofauna.

Carbon sequestration and climate change mitigation using macroalgae: a state of knowledge review

The conservation, restoration, and improved management of terrestrial forests significantly contributes to mitigate climate change and its impacts, as well as providing numerous co-benefits. The pressing need to reduce emissions and increase carbon removal from the atmosphere is now also leading to the development of natural climate solutions in the ocean. Interest in the carbon sequestration potential of underwater macroalgal forests is growing rapidly among policy, conservation, and corporate sectors. Yet, our understanding of whether carbon sequestration from macroalgal forests can lead to tangible climate change mitigation remains severely limited, hampering their inclusion in international policy or carbon finance frameworks. Here, we examine the results of over 180 publications to synthesise evidence regarding macroalgal forest carbon sequestration potential. We show that research efforts on macroalgae carbon sequestration are heavily skewed towards particulate organic carbon (POC) pathways (77% of data publications), and that carbon fixation is the most studied flux (55%). Fluxes leading directly to carbon sequestration (e.g. carbon export or burial in marine sediments) remain poorly resolved, likely hindering regional or country-level assessments of carbon sequestration potential, which are only available from 17 of the 150 countries where macroalgal forests occur. To solve this issue, we present a framework to categorize coastlines according to their carbon sequestration potential. Finally, we review the multiple avenues through which this sequestration can translate into climate change mitigation capacity, which largely depends on whether management interventions can increase carbon removal above a natural baseline or avoid further carbon emissions. We find that conservation, restoration and afforestation interventions on macroalgal forests can potentially lead to carbon removal in the order of 10's of Tg C globally. Although this is lower than current estimates of natural sequestration value of all macroalgal habitats (61-268 Tg C year-1 ), it suggests that macroalgal forests could add to the total mitigation potential of coastal blue carbon ecosystems, and offer valuable mitigation opportunities in polar and temperate areas where blue carbon mitigation is currently low. Operationalizing that potential will necessitate the development of models that reliably estimate the proportion of production sequestered, improvements in macroalgae carbon fingerprinting techniques, and a rethinking of carbon accounting methodologies. The ocean provides major opportunities to mitigate and adapt to climate change, and the largest coastal vegetated habitat on Earth should not be ignored simply because it does not fit into existing frameworks.

Marine conservation palaeobiology: What does the late Quaternary fossil record tell us about modern-day extinctions and biodiversity threats?

Near-time conservation palaeobiology uses palaeontological, archaeological and other geohistorical records to study the late Quaternary transition of the biosphere from its pristine past to its present-day, human-altered state. Given the scarcity of data on recent extinctions in the oceans, geohistorical records are critical for documenting human-driven extinctions and extinction threats in the marine realm. The historical perspective can provide two key insights. First, geohistorical records archive the state of pre-industrial oceans at local, regional and global scales, thus enabling the detection of recent extinctions and extirpations as well as shifts in species distribution, abundance, body size and ecosystem function. Second, we can untangle the contributions of natural and anthropogenic processes by documenting centennial-to-millennial changes in the composition and diversity of marine ecosystems before and after the onset of major human impacts. This long-term perspective identifies recently emerging patterns and processes that are unprecedented, thus allowing us to better assess human threats to marine biodiversity. Although global-scale extinctions are not well documented for brackish and marine invertebrates, geohistorical studies point to numerous extirpations, declines in ecosystem functions, increases in range fragmentation and dwindling abundance of previously widespread species, indicating that marine ecosystems are accumulating a human-driven extinction debt.

Trapped DNA fragments in marine sponge specimens unveil North Atlantic deep-sea fish diversity

Sponges pump water to filter feed and for diffusive oxygen uptake. In doing so, trace DNA fragments from a multitude of organisms living around them are trapped in their tissues. Here we show that the environmental DNA retrieved from archived marine sponge specimens can reconstruct the fish communities at the place of sampling and discriminate North Atlantic assemblages according to biogeographic region (from Western Greenland to Svalbard), depth habitat (80-1600 m), and even the level of protection in place. Given the cost associated with ocean biodiversity surveys, we argue that targeted and opportunistic sponge samples - as well as the specimens already stored in museums and other research collections - represent an invaluable trove of biodiversity information that can significantly extend the reach of ocean monitoring.

Making protected areas effective for biodiversity, climate and food

The spatial extent of marine and terrestrial protected areas (PAs) was among the most intensely debated issues prior to the decision about the post-2020 Global Biodiversity Framework (GBF) of the Convention on Biological Diversity. Positive impacts of PAs on habitats, species diversity and abundance are well documented. Yet, biodiversity loss continues unabated despite efforts to protect 17% of land and 10% of the oceans by 2020. This casts doubt on whether extending PAs to 30%, the agreed target in the Kunming-Montreal GBF, will indeed achieve meaningful biodiversity benefits. Critically, the focus on area coverage obscures the importance of PA effectiveness and overlooks concerns about the impact of PAs on other sustainability objectives. We propose a simple means of assessing and visualising the complex relationships between PA area coverage and effectiveness and their effects on biodiversity conservation, nature-based climate mitigation and food production. Our analysis illustrates how achieving a 30% PA global target could be beneficial for biodiversity and climate. It also highlights important caveats: (i) achieving lofty area coverage objectives alone will be of little benefit without concomitant improvements in effectiveness, (ii) trade-offs with food production particularly for high levels of coverage and effectiveness are likely and (iii) important differences in terrestrial and marine systems need to be recognized when setting and implementing PA targets. The CBD's call for a significant increase in PA will need to be accompanied by clear PA effectiveness goals to reduce and revert dangerous anthropogenic impacts on socio-ecological systems and biodiversity.

ROV-based monitoring of passive ecological recovery in a deep-sea no-take fishery reserve

In the context of marine conservation, trawl fishing activity is the most important ecosystem stressor in demersal Mediterranean waters. Limited management measures in bottom trawling have caused deep-sea stocks of the iconic Norway lobster Nephrops norvegicus to decrease over the last decade. This crustacean acts as an umbrella species for co-existing megafauna. Here, we used non-invasive Remote Operated Vehicle (ROV) video-surveys to investigate the status of a pilot deep-sea no-take reserve implemented in the northwestern Mediterranean by quantifying demographic indicators of Norway lobsters and the co-existing benthic community, seafloor restoration, and the presence of marine litter. The results revealed that in the no-take reserve the Norway lobster stock showed higher abundance and biomass, and slightly larger body sizes than in the control area without fishing prohibition. Some taxa, such as the fishes Helicolenus dactylopterus and Trigla lyra and anemones of the family Cerianthidae, increased in abundance. We also observed that all trawling marks were smoothed and most of the seafloor was intact, clear indicators of the recovery of the muddy seafloor. The accumulation of marine debris and terrestrial vegetation was similar in the no-take reserve and the fished area. On the basis of the results of this study, we suggest that the use of no-take reserves might be an effective measure for recovering the Norway lobster stock, its co-existing megafauna community, and the surrounding demersal habitat. We also suggest that ROV video-survey might be a useful, and non-invasive method to monitor megafauna and seafloor status in protected deep-sea environments.

First in-situ monitoring of sponge response and recovery to an industrial sedimentation event

Assessment of risks to seabed habitats from industrial activities is based on the resilience and potential for recovery. Increased sedimentation, a key impact of many offshore industries, results in burial and smothering of benthic organisms. Sponges are particularly vulnerable to increases in suspended and deposited sediment, but response and recovery have not been observed in-situ. We quantified the impact of sedimentation from offshore hydrocarbon drilling over ∼5 days on a lamellate demosponge, and its recovery in-situ over ∼40 days using hourly time-lapse photographs with measurements of backscatter (a proxy of suspended sediment) and current speed. Sediment accumulated on the sponge then cleared largely gradually but occasionally sharply, though it did not return to the initial state. This partial recovery likely involved a combination of active and passive removal. We discuss the use of in-situ observing, which is critical to monitoring impacts in remote habitats, and need for calibration to laboratory conditions.

Scientific progress made towards bridging the knowledge gap in the biology of Mediterranean marine fishes

The Mediterranean Sea is a renowned biodiversity hotspot influenced by multiple interacting ecological and human forces. A gap analysis on the biology of Mediterranean marine fishes was conducted in 2017, revealing the most studied species and biological characteristics, as well as identifying knowledge gaps and areas of potential future research. Here, we updated this gap analysis five years later by reviewing the literature containing information on the same eight biological characteristics, namely length-weight relationships, growth, maximum age, mortality, spawning, maturity, fecundity and diet, for the 722 fish species of the Mediterranean Sea. The results revealed a considerable knowledge gap as 37% of the species had no information for any of the studied characteristics, while 13% had information on only one characteristic. Out of all the biological characteristics, the smallest knowledge gap was found in the length-weight relationships (studied for 51% of the species, mainly in the eastern Mediterranean), while the least studied characteristic was mortality (studied for 10% of the species). The western and eastern Mediterranean Sea were leading forces in data collection exhibiting the narrowest gaps between current and desired knowledge. The most studied species across the entire region were the highly commercial European hake (Merluccius merluccius), red mullet (Mullus barbatus), European anchovy (Engraulis encrasicolus), European pilchard (Sardina pilchardus), common pandora (Pagellus erythrinus), and annular seabream (Diplodus annularis). The knowledge gap has shrunk by 6% during the last five years, with 40 new species having at least one study on their biology. Moreover, research has slightly shifted towards species that have been traditionally neglected, e.g., sharks, rays and chimaeras (chondrichthyans). It is recommended that research becomes less focused on commercial species and more targeted towards the identified gaps, vulnerable species (e.g., deep-sea species and chondrichthyans) and species that could potentially pose a threat (e.g., non-indigenous species) to the ecosystems of the everchanging Mediterranean Sea.

Detection of community-wide impacts of bottom trawl fishing on deep-sea assemblages using environmental DNA metabarcoding

Although considerable research progress on the effects of anthropogenic disturbance in the deep sea has been made in recent years, our understanding of these impacts at community level remains limited. Here, we studied deep-sea assemblages of Sicily (Mediterranean Sea) subject to different intensities of benthic trawling using environmental DNA (eDNA) metabarcoding and taxonomic identification of meiofauna communities. Firstly, eDNA metabarcoding data did not detect trawling impacts using alpha diversity whereas meiofauna data detected a significant effect of trawling. Secondly, both eDNA and meiofauna data detected significantly different communities across distinct levels of trawling intensity when we examined beta diversity. Taxonomic assignment of the eDNA data revealed that Bryozoa was present only at untrawled sites, highlighting their vulnerability to trawling. Our results provide evidence for community-wide impacts of trawling, with different trawling intensities leading to distinct deep-sea communities. Finally, we highlight the need for further studies to unravel understudied deep-sea biodiversity.

The influence of mussel restoration on coastal carbon cycling

Increasing responsiveness to anthropogenic climate change and the loss of global shellfish ecosystems has heightened interest in the carbon storage and sequestration potential of bivalve-dominated systems. While coastal ecosystems are dynamic zones of carbon transformation and change, current uncertainties and notable heterogeneity in the benthic environment make it difficult to ascertain the climate change mitigation capacity of ongoing coastal restoration projects aimed at revitalizing benthic bivalve populations. In this study we sought to distinguish between direct and indirect effects of subtidal green-lipped mussels (Perna canaliculus) on carbon cycling, and combined published literature with in-situ experiments from restored beds to create a carbon budget for New Zealand's shellfish restoration efforts. A direct summation of biogenic calcification, community respiration, and sediment processes suggests a moderate carbon efflux (+100.1 to 179.6 g C m^-2  year^-1 ) occurs as a result of recent restoration efforts, largely reflective of the heterotrophic nature of bivalves. However, an examination of indirect effects of restoration on benthic community metabolism and sediment dynamics suggests that beds achieve greater carbon fixation rates and support enhanced carbon burial compared to nearby sediments devoid of mussels. We discuss limitations to our first-order approximation and postulate how the significance of mussel restoration to carbon-related outcomes likely increases over longer timescales. Coastal restoration is often conducted to support the provisioning of many ecosystem services, and we propose here that shellfish restoration not be used as a single measure to offset carbon dioxide emissions, but rather used in tandem with other initiatives to recover a bundle of valued ecosystem services.

Benthic litter in the continental slope of the Gulf of Naples (central-western Mediterranean Sea) hosts limited fouling communities but facilitates molluscan spawning

Seafloor pollution by benthic litter is an emerging phenomenon, although debris colonization by biota remains largely unexplored. We characterized the litter of the continental slope (~400-600 m) of the Gulf of Naples (Mediterranean) and investigated its fouling biota through integrative taxonomic approaches. Plastic pieces (82 %) with land-based origin (96 %) and limited sizes (10-20 cm) were the items most commonly encountered, suggesting a transfer to deep waters through floating and sinking. The majority of the items were not fouled, and the debris hosted an impoverished biota, leading to hypothesize that benthic litter supports wide communities only in shallow waters. Higher colonization rates were observed for gastropod and cephalopod eggs with no preference for materials and sizes, suggesting that even small pieces of soft plastic provide a spawning habitat for molluscs and affect species' connectivity in the deep-sea ecosystem. Holistic approaches are necessary to evaluate interactions between litter and biota.

Effects of Field Simulated Marine Heatwaves on Sedimentary Organic Matter Quantity, Biochemical Composition, and Degradation Rates

Simple Summary

Marine heatwaves (MHWs) are intensifying due to global warming. Based on their effects on biochemical reactions, they are also likely to affect coastal biogeochemistry. We investigated organic matter quantity, composition and degradation rates in nearshore sediments affected by simulated MHWs, with 1.5 and 5.0 °C anomalies, before and after 3 and 11 weeks from the release of an artificial warm water plume. MHWs enhanced organic loads (by >100%), with larger effects in the short-term under the highest temperature anomaly. Phytopigment contents increased (by 50–90%) in the short term but decreased to initial values in the longer one. The autotrophic and lipid contents decreased with time (by 15–50% 53–79%, respectively), suggesting a drop in the nutritional quality of organic matter, along with a slowdown of its turnover. We contend that MHWs’ intensification will affect not only species and communities but will also alter sediment biogeochemistry and, possibly, the energy transfer towards higher trophic levels.

Abstract

Since rising temperature (T) will enhance biochemical reactions and coastal marine sediments are hotspots of carbon cycling, marine heatwaves’ (MHWs’) intensification caused by climate change will affect coastal biogeochemistry. We investigated the effects of MHWs on sediment organic matter (OM) in a nearshore locality (NW Sardinia, Mediterranean Sea) receiving an artificial warm water plume generating T anomalies of 1.5–5.0 °C. Sediments were collected before and after 3 and 11 weeks from the initial plume release. Both MHWs influenced sedimentary OM quantity, composition, and degradation rates, with major effects associated with the highest T anomaly after 3 weeks. Both MHWs enhanced sedimentary OM contents, with larger effects associated with the highest T anomaly. Phytopigment contents increased in the short term but dropped to initial levels after 11 weeks, suggesting the occurrence of thermal adaptation or stress of microphytobenthos. In the longer term we observed a decrease in the nutritional quality of OM and a slowdown of its turnover mediated by extracellular enzymes, suggestive of a decreased ecosystem functioning. We anticipate that intensification of MHWs will affect benthic communities not only through direct effects on species tolerance but also by altering benthic biogeochemistry and the efficiency of energy transfer towards higher trophic levels.

Impact of resuspended mine tailings on benthic biodiversity and ecosystem processes: The case study of Portmán Bay, Western Mediterranean Sea, Spain

Industrial seabed mining is expected to cause significant impacts on marine ecosystems, including physical disturbance and the generation of plumes of toxin-laden water. Portmán Bay (NW Mediterranean Sea), where an estimated amount of 60 Mt of mine tailings from sulphide ores were dumped from 1957 to 1990, is one of the most metal-polluted marine areas in Europe and worldwide. This bay can be used to assess the impact on marine ecosystems of particle settling from sediment plumes resulting from mine tailings resuspension. With this purpose in mind, we conducted a field experiment there to investigate subsequent effects of deposition of (artificially resuspended) contaminated sediments on (i) prokaryotic abundance and meiofaunal assemblages (in terms of abundance and diversity), (ii) the availability of trophic resources (in terms of organic matter biochemical composition), and (iii) a set of ecosystem functions including meiofaunal biomass, heterotrophic C production and C degradation rates. The results of this study show that mine tailings resuspension and plume deposition led to the decline of prokaryotic abundance and nematode's biodiversity. The later decreased because of species removal and transfer along with particle resuspension and plume deposition. Such changes were also associated to a decrease of the proteins content in the sediment organic matter, faster C degradation rates and higher prokaryotic C production. Overall, this study highlights that mine tailing resuspension and ensuing particle deposition can have deleterious effects on both prokaryotes and nematode diversity, alter biogeochemical cycles and accelerate C degradation rates. These results should be considered for the assessment of the potential effects of seabed mineral exploitation on marine ecosystems at large.

The impact of mobile demersal fishing on carbon storage in seabed sediments

Subtidal marine sediments are one of the planet's primary carbon stores and strongly influence the oceanic sink for atmospheric CO₂ . By far the most widespread human activity occurring on the seabed is bottom trawling/dredging for fish and shellfish. A global first-order estimate suggested mobile demersal fishing activities may cause 0.16-0.4 Gt of organic carbon (OC) to be remineralized annually from seabed sediment carbon stores (Sala et al., 2021). There are, however, many uncertainties in this calculation. Here, we discuss the potential drivers of change in seabed sediment OC stores due to mobile demersal fishing activities and conduct a literature review, synthesizing studies where this interaction has been directly investigated. Under certain environmental settings, we hypothesize that mobile demersal fishing would reduce OC in seabed stores due to lower production of flora and fauna, the loss of fine flocculent material, increased sediment resuspension, mixing and transport and increased oxygen exposure. Reductions would be offset to varying extents by reduced faunal bioturbation and community respiration, increased off-shelf transport and increases in primary production from the resuspension of nutrients. Studies which directly investigated the impact of demersal fishing on OC stocks had mixed results. A finding of no significant effect was reported in 61% of 49 investigations; 29% reported lower OC due to fishing activities, with 10% reporting higher OC. In relation to remineralization rates within the seabed, four investigations reported that demersal fishing activities decreased remineralization, with three reporting higher remineralization rates. Patterns in the environmental and experimental characteristics between different outcomes were largely indistinct. More evidence is urgently needed to accurately quantify the impact of anthropogenic physical disturbance on seabed carbon in different environmental settings and to incorporate full evidence-based carbon considerations into global seabed management.

Assessing discards in an illegal small-scale fishery using fisher-led reporting

About a third of all marine fish in the world are caught in Small-Scale Fisheries (SSF). SSF are increasingly recognised as essential for food security and livelihoods for vulnerable and economically fragile communities globally. Although individual SSF vessels are usually perceived as having little impact on the ecosystem, the cumulative impact of gear type and number of vessels may be substantial. Bottom trawling is a common fishing method that can greatly influence the marine ecosystem by damaging the seafloor and generating high levels of discards. However, appropriate sampling coverage using on-board observer programmes to collect these data from SSF are rare, as they are expensive and pose logistical constraints. A mobile App was used to assess whether self-reporting by fishers could provide reliable fine-scale information on fishing effort and discards over time in an illegal shrimp trawling fishery in northern Peru. Maps depicting the spatial distribution of trawling effort and the proportion of discards from observers and fishers were compared using the Similarity in Means (SIM) Index, which ranges from 0 when spatial patterns differ completely to 1 when spatial patterns are very similar. High levels of agreement between spatio-temporal patterns of effort (SIM Index = 0.81) and discards (0.96) were found between fisher and observer maps. Moreover, far greater spatial coverage was accomplished by fishers, suggesting that self-reporting via an App represents a useful approach to collect reliable fisheries data as an initial step for effective monitoring and management of these fisheries.

Supplementary Information

The online version contains supplementary material available at 10.1007/s11160-022-09708-9.

Patterns of eukaryotic diversity from the surface to the deep-ocean sediment

Remote deep-ocean sediment (DOS) ecosystems are among the least explored biomes on Earth. Genomic assessments of their biodiversity have failed to separate indigenous benthic organisms from sinking plankton. Here, we compare global-scale eukaryotic DNA metabarcoding datasets (18S-V9) from abyssal and lower bathyal surficial sediments and euphotic and aphotic ocean pelagic layers to distinguish plankton from benthic diversity in sediment material. Based on 1685 samples collected throughout the world ocean, we show that DOS diversity is at least threefold that in pelagic realms, with nearly two-thirds represented by abundant yet unknown eukaryotes. These benthic communities are spatially structured by ocean basins and particulate organic carbon (POC) flux from the upper ocean. Plankton DNA reaching the DOS originates from abundant species, with maximal deposition at high latitudes. Its seafloor DNA signature predicts variations in POC export from the surface and reveals previously overlooked taxa that may drive the biological carbon pump.

Commercial fishery disturbance of the global ocean biological carbon sink

Plankton drive a major sink of carbon across the global oceans. Dead plankton, their faeces and the faeces of plankton feeders, form a huge rain of carbon sinking to the seabed and deep ocean, reducing atmospheric CO₂ levels and thus helping to regulate the climate. Any change in plankton communities, ecosystems or habitats will perturb this carbon sink, potentially increasing atmospheric CO₂ . Fishing is a major cause of ocean ecosystem disturbance affecting all trophic levels including plankton, but its potential impact on the carbon sink is unknown. As both fisheries and the carbon sink depend on plankton, there is spatial overlap of these fundamental ecosystem services. Here, we provide the first global maps of this spatial overlap. Using an upper quartile analysis, we show that 21% of the total upper ocean carbon sink (export) and 39% of fishing effort globally are concentrated in zones of intensive overlap, representing 9% of the ocean surface area. This overlap is particularly evident in the Northeast Atlantic suggesting this region should be prioritized in terms of research and conservation measures to preserve the high levels of sinking carbon. Small pelagic fish dominate catches here and globally, and their exploitation could reduce important faecal pellet carbon sinks and cause trophic cascades affecting plankton communities. There is an urgent need to recognize that, alongside climate change, fishing might be a critical influence on the ability of the ocean to sequester atmospheric CO₂ . Improved understanding of this influence, and how it will change with the climate, will be important for realizing a sustainable balance of the twin needs for productive fisheries and strong carbon sinks.

COVID-19 Pandemic Lockdown: An Excellent Opportunity to Study the Effects of Trawling Disturbance on Macrobenthic Fauna in the Shallow Waters of the Gulf of Gabès (Tunisia, Central Mediterranean Sea)

This study describes for the first time in the central Mediterranean Sea the effects of bottom trawling on macrobenthic fauna in tidal channels of the Kneiss Islands in the Gulf of Gabès, Tunisia. Following a BACI protocol, two control stations (protected by artificial reefs) and two trawled stations (impacted stations) were sampled during a period with the absence of bottom trawling activity (the COVID-19 pandemic lockdown period from March to May 2020) and during a trawled period. Although bottom trawling had no impact on sediment composition, this anthropogenic activity reduced the concentration of dissolved oxygen and had a noticeable effect on water column turbidity. The absence of trawling led to a significant increase in biomass, number of species, and abundance of total macrofauna. This illustrated the negative effect of trawling activity in shallow waters and the high resilience of macrobenthic communities of the tidal ecosystem of the Kneiss Islands. In the future, it would be very important to control the use of this destructive fishing gear due to its negative impact on the marine habitat and macrofauna, which represents essential prey for fishes and birds living in this protected area.

Food web interactions in a human dominated Mediterranean coastal ecosystem

Mediterranean coastal ecosystems provide various valuable ecosystem goods and services; however, they are vulnerable to ecological degradation due to a dramatic increase in resource use and environmental stress. Disentangling the effects of multiple human interventions on coastal ecosystems requires whole description of food web interactions using quantitative tools. A mass balance Ecopath model has been developed here for Saronikos Gulf, a naturally oligotrophic Mediterranean coastal ecosystem with a long history of human interventions. Our main focus was to describe the structure and functioning of the ecosystem, investigate the trophic interplay among the various compartments of the food web under the impact of mixed multi-gear fisheries, and to quantify resilience related emergent ecosystem properties. To this end, we reviewed a large amount of local and regional biological information which was integrated in 40 functional groups covering all trophic levels, while fishing activities were described with 7 fleets. The model shared characteristics of both productive (e.g., high amount of flows) and oligotrophic systems (e.g., low biomass accumulation) and presented typical features of Mediterranean ecosystem functioning, such as the importance of detritus as an energy source, strong benthic-pelagic coupling and the dominance of the pelagic compartment in terms of total production and consumption. Trophic forcing in the ecosystem of Saronikos Gulf was complex with both top-down and bottom-up drivers being important. Zooplankton was the central nexus between basal resources and higher trophic levels, while top predators such as hake, squids and anglerfish were identified as keystone species presenting a significant overall effect on the food web via direct and indirect trophic interactions. Ecological indicators depicted a moderately complex food-web of a large and immature ecosystem with its strengths in reserve being affected by environmental degradation. Additionally, exploitation indices classified fishing activities in Saronikos Gulf as unsustainable, affecting several target groups, including high trophic level species. However, the morphological and bathymetric complexity of Saronikos Gulf seems to function as a natural ecological reserve for the ecosystem by providing nursery grounds to various species (e.g., hake, small pelagic fishes) and supporting important fish stocks for local fisheries.

Understanding the Impacts of Blue Economy Growth on Deep-Sea Ecosystem Services

The deep sea is the vastest environment on Earth and provides many services and goods. Understanding the services and goods of deep-sea ecosystems would enable better resource governance and decision-making. In the present study, we reviewed and assessed deep-sea ecosystems services using the Ma conceptual framework, which incorporates ecosystems services and goods with human welfare. We also analyzed and measured the scientific production between 2012 and 2021 using the Dimension dataset. The bibliometric analysis showed a lack of studies related to deep-sea ecosystem services, which suggest the urgent need to overcome the existing knowledge gap regarding deep-sea components. However, the current knowledge revealed the crucial role that these ecosystems provide to the planet. Furthermore, we highlighted that there are common services and goods, and every ecosystem service feeds into another one. Developing actions and policies based on approaches that combine all deep-sea ecosystems services and goods are needed for the sustainable growth of the deep-sea economy in accordance with the United Nations Development Goal 14: Life Below Water.

Evidence of large increases in sedimentation rates due to fish trawling in submarine canyons of the Gulf of Palermo (SW Mediterranean)

Bottom trawling in submarine canyons can affect their natural sedimentation rates, but studies addressing this issue are still scarce. In the Gulf of Palermo (SW Mediterranean), bottom trawling occurs on the slope around Oreto, Arenella and Eleuterio canyons. Analyses of excess ²¹⁰Pb concentrations and grain size fractions in sediment cores from their canyon axes revealed that sedimentation rates and silt contents increased in all canyons in the 1980s, due to the expansion of more powerful trawlers (>500 HP) to deeper fishing grounds. In Eleuterio and Arenella canyons, sedimentation rates increased by an order of magnitude (0.1-1.4 cm·yr^-1), whereas they increased less (0.1-0.7 cm·yr^-1) in Oreto Canyon, since the enhanced trawling-derived sediment fluxes into this canyon are affected by sediment resuspension from trawling along its axis. Considering the global expansion of bottom trawling, we anticipate similar alterations in other trawled canyons, with ecological consequences that should be addressed by management strategies.

The modeled distribution of corals and sponges surrounding the Salas y Gómez and Nazca ridges with implications for high seas conservation

The Salas y Gómez and Nazca ridges are two adjacent seamount chains off the west coast of South America that collectively contain more than 110 seamounts. The ridges support an exceptionally rich diversity of benthic and pelagic communities, with the highest level of endemism found in any marine environment. Despite some historical fishing in the region, the seamounts are relatively pristine and represent an excellent conservation opportunity to protect a global biodiversity hotspot before it is degraded. One obstacle to effective spatial management of the ridges is the scarcity of direct observations in deeper waters throughout the region and an accompanying understanding of the distribution of key taxa. Species distribution models are increasingly used tools to quantify the distributions of species in data-poor environments. Here, we focused on modeling the distribution of demosponges, glass sponges, and stony corals, three foundation taxa that support large assemblages of associated fauna through the creation of complex habitat structures. Models were constructed at a 1 km2 resolution using presence and pseudoabsence data, dissolved oxygen, nitrate, phosphate, silicate, aragonite saturation state, and several measures of seafloor topography. Highly suitable habitat for each taxa was predicted to occur throughout the Salas y Gómez and Nazca ridges, with the most suitable habitat occurring in small patches on large terrain features such as seamounts, guyots, ridges, and escarpments. Determining the spatial distribution of these three taxa is a critical first step towards supporting the improved spatial management of the region. While the total area of highly suitable habitat was small, our results showed that nearly all of the seamounts in this region provide suitable habitats for deep-water corals and sponges and should therefore be protected from exploitation using the best available conservation measures.

Non-biodegradable objects may boost microbial growth in water bodies by harnessing bubbles

Given the ubiquity of bubbles and non-biodegradable wastes in aqueous environments, their transport through bubbles should be widely extant in water bodies. In this study, we investigate the effect of bubble-induced waste transport on microbial growth by using yeasts as model microbes and a silicone rubber object as model waste. Noteworthily, this object repeatedly rises and sinks in fluid through fluctuations in bubble-acquired buoyant forces produced by cyclic nucleation, growth and release of bubbles from object's surface. The rise-sink movement of the object gives rise to a strong bulk mixing and an enhanced resuspension of cells from the floor. Such spatially dynamic contaminant inside a nutrient-rich medium also leads to an increment in the total microbe concentration in the fluid. The enhanced concentration is caused by strong nutrient mixing generated by the object's movement which increases the nutrient supply to growing microbes and thereby, prolonging their growth phases. We confirm these findings through a theoretical model for cell concentration and nutrient distribution in fluid medium. The model is based on the continuum hypothesis and it uses the general conservation law which takes an advection-diffusion growth form. We conclude the study with the demonstration of bubble-induced digging of objects from model sand.

Impacts of bottom trawling on benthic biogeochemistry in muddy sediments: Removal of surface sediment using an experimental field study

Experimental benthic dredging was conducted in an unfished, muddy area in the Baltic Proper to mimic the impact of trawling by removing surface sediment, with a focus on benthic biogeochemical processes. Sediment cores were taken on the track and compared to undisturbed controls. Benthic fluxes were immediately affected and an upward shift in pore water DIC profiles was detected. The time needed for the sediment to readjust to a new biogeochemical state seemed to be nutrient-specific. Sediment properties (profiles of chlorophyll, organic carbon and water content) were found to change significantly. Macrofauna was removed completely by the dredge pointing out the potential loss of highly valuable functions that are associated with them. In the Baltic Sea, in areas which were previously the most heavily fished, the frequency of trawling may have left little time for readjustment and potentially kept the seabed in a permanent state of transient biogeochemical cycling.

Combined effects of human pressures on Europe's marine ecosystems

Marine ecosystems are under high demand for human use, giving concerns about how pressures from human activities may affect their structure, function, and status. In Europe, recent developments in mapping of marine habitats and human activities now enable a coherent spatial evaluation of potential combined effects of human activities. Results indicate that combined effects from multiple human pressures are spread to 96% of the European marine area, and more specifically that combined effects from physical disturbance are spread to 86% of the coastal area and 46% of the shelf area. We compare our approach with corresponding assessments at other spatial scales and validate our results with European-scale status assessments for coastal waters. Uncertainties and development points are identified. Still, the results suggest that Europe's seas are widely disturbed, indicating potential discrepancy between ambitions for Blue Growth and the objective of achieving good environmental status within the Marine Strategy Framework Directive.

A Perspective for Best Governance of the Bari Canyon Deep-Sea Ecosystems

There is growing awareness of the impact of fishery activities on fragile and vulnerable deep-sea ecosystems, stimulating actions devoted to their protection and best management by national and international organizations. The Bari Canyon in the Adriatic Sea represents a good case study of this, since it hosts vulnerable ecosystems, threatened species, as well as valuable commercial species, but virtually lacks substantial management plans for the sustainable use of resources. This study documents the high level of biodiversity of the Bari Canyon and the impact of human activities by analyzing remotely operated vehicle surveys and benthic lander deployments. An integrated socio-economic study provides information on fishing pressure in the Bari Canyon and in the surrounding areas. Finally, measures of conservation, protection, and management are discussed and suggested for this remarkable site in the context of the deep Mediterranean Sea.

Protecting the global ocean for biodiversity, food and climate

The ocean contains unique biodiversity, provides valuable food resources and is a major sink for anthropogenic carbon. Marine protected areas (MPAs) are an effective tool for restoring ocean biodiversity and ecosystem services1,2, but at present only 2.7% of the ocean is highly protected3. This low level of ocean protection is due largely to conflicts with fisheries and other extractive uses. To address this issue, here we developed a conservation planning framework to prioritize highly protected MPAs in places that would result in multiple benefits today and in the future. We find that a substantial increase in ocean protection could have triple benefits, by protecting biodiversity, boosting the yield of fisheries and securing marine carbon stocks that are at risk from human activities. Our results show that most coastal nations contain priority areas that can contribute substantially to achieving these three objectives of biodiversity protection, food provision and carbon storage. A globally coordinated effort could be nearly twice as efficient as uncoordinated, national-level conservation planning. Our flexible prioritization framework could help to inform both national marine spatial plans4 and global targets for marine conservation, food security and climate action.

Mitigating seafloor disturbance of bottom trawl fisheries for North Sea sole Solea solea by replacing mechanical with electrical stimulation

Ecosystem effects of bottom trawl fisheries are of major concern. Although it is prohibited to catch fish using electricity in European Union waters, a number of beam trawlers obtained a derogation and switched to pulse trawling to explore the potential to reduce impacts. Here we analyse whether using electrical rather than mechanical stimulation results in an overall reduction in physical disturbance of the seafloor in the beam-trawl fishery for sole Solea solea. We extend and apply a recently developed assessment framework to the Dutch beam-trawl fleet and show that the switch to pulse trawling substantially reduced benthic impacts when exploiting the total allowable catch of sole in the North Sea. Using Vessel Monitoring by Satellite and logbook data from 2009 to 2017, we estimate that the trawling footprint decreased by 23%, the precautionary impact indicator of the benthic community decreased by 39%, the impact on median longevity of the benthic community decreased by 20%, the impact on benthic biomass decreased by 61%, and the amount of sediment mobilised decreased by 39%. The decrease in impact is due to the replacement of tickler chains by electrode arrays, a lower towing speed and higher catch efficiency for sole. The effort and benthic physical disturbance of the beam-trawl fishery targeting plaice Pleuronectes platessa in the central North Sea increased with the recovery of the plaice stock. Our study illustrates the utility of a standardized methodological framework to assess the differences in time trends and physical disturbance between gears.

Harnessing the power of eDNA metabarcoding for the detection of deep-sea fishes

The deep ocean is the largest biome on Earth and faces increasing anthropogenic pressures from climate change and commercial fisheries. Our ability to sustainably manage this expansive habitat is impeded by our poor understanding of its inhabitants and by the difficulties in surveying and monitoring these areas. Environmental DNA (eDNA) metabarcoding has great potential to improve our understanding of this region and to facilitate monitoring across a broad range of taxa. Here, we evaluate two eDNA sampling protocols and seven primer sets for elucidating fish diversity from deep sea water samples. We found that deep sea water samples (> 1400 m depth) had significantly lower DNA concentrations than surface or mid-depth samples necessitating a refined protocol with a larger sampling volume. We recovered significantly more DNA in large volume water samples (1.5 L) filtered at sea compared to small volume samples (250 mL) held for lab filtration. Furthermore, the number of unique sequences (exact sequence variants; ESVs) recovered per sample was higher in large volume samples. Since the number of ESVs recovered from large volume samples was less variable and consistently high, we recommend the larger volumes when sampling water from the deep ocean. We also identified three primer sets which detected the most fish taxa but recommend using multiple markers due the variability in detection probabilities and taxonomic resolution among fishes for each primer set. Overall, fish diversity results obtained from metabarcoding were comparable to conventional survey methods. While eDNA sampling and processing need be optimized for this unique environment, the results of this study demonstrate that eDNA metabarcoding can facilitate biodiversity surveys in the deep ocean, require less dedicated survey effort per unit identification, and are capable of simultaneously providing valuable information on other taxonomic groups.

Impact of historical sulfide mine tailings discharge on meiofaunal assemblages (Portmán Bay, Mediterranean Sea)

Portmán Bay is one of the most contaminated and chronically impacted coastal marine areas of the world. Here, from the 1957 to 1990, about 60 million tons of mine tailings from the processing of sulfide ores were dumped directly at the shoreline. The resulting deposit provides a unique opportunity to assess the impact of mine tailings on coastal marine ecosystems after ca 30 years since the discharge has ceased. We investigated meiofaunal abundance, biomass and biodiversity along a gradient of metal concentration that overlaps with a bathymetric gradient from 30 to 60 m depth. Despite the localized presence of extremely high concentration of metals, the bay was not a biological desert, but, nevertheless, was characterized by evident signs of impact on benthic diversity. Meiofaunal variables increased significantly with decreasing metal contamination, eventually reaching values comparable to other uncontaminated coastal sediments. Our results show that mine tailings influenced the spatial distribution of meiofaunal taxa and nematode species composition. In particular, we report here that the bay was characterized by the dominance of nematode opportunistic species tolerant to high metal concentration. The effects of mine tailing discharge on meiofaunal biodiversity and composition were still evident ca 30 years after the end of the mining activities. Overall, this study provides new insights on the potential impact of mine tailings disposal and metal contamination in coastal sediments, and, can also contribute to predict the potential long-term consequences of ever-expanding deep-sea mining industry on benthic environments.

Climate action requires new accounting guidance and governance frameworks to manage carbon in shelf seas

Accounting guidelines exist for the recording of carbon flows in terrestrial and coastal ecosystems. Shelf sea sediments, while considered an important carbon store, have yet to receive comparable scrutiny. Here, we explore whether effective management of carbon stocks accumulating in shelf seas could contribute towards a nation's greenhouse gas emissions reduction targets. We review the complexities of carbon transport and fate in shelf seas, and the geopolitical challenges of carbon accounting in climate governance because of the transboundary nature of carbon flows in the marine environment. New international accounting guidance and governance frameworks are needed to prompt climate action.

Climate change considerations are fundamental to management of deep-sea resource extraction

Climate change manifestation in the ocean, through warming, oxygen loss, increasing acidification, and changing particulate organic carbon flux (one metric of altered food supply), is projected to affect most deep-ocean ecosystems concomitantly with increasing direct human disturbance. Climate drivers will alter deep-sea biodiversity and associated ecosystem services, and may interact with disturbance from resource extraction activities or even climate geoengineering. We suggest that to ensure the effective management of increasing use of the deep ocean (e.g., for bottom fishing, oil and gas extraction, and deep-seabed mining), environmental management and developing regulations must consider climate change. Strategic planning, impact assessment and monitoring, spatial management, application of the precautionary approach, and full-cost accounting of extraction activities should embrace climate consciousness. Coupled climate and biological modeling approaches applied in the water and on the seafloor can help accomplish this goal. For example, Earth-System Model projections of climate-change parameters at the seafloor reveal heterogeneity in projected climate hazard and time of emergence (beyond natural variability) in regions targeted for deep-seabed mining. Models that combine climate-induced changes in ocean circulation with particle tracking predict altered transport of early life stages (larvae) under climate change. Habitat suitability models can help assess the consequences of altered larval dispersal, predict climate refugia, and identify vulnerable regions for multiple species under climate change. Engaging the deep observing community can support the necessary data provisioning to mainstream climate into the development of environmental management plans. To illustrate this approach, we focus on deep-seabed mining and the International Seabed Authority, whose mandates include regulation of all mineral-related activities in international waters and protecting the marine environment from the harmful effects of mining. However, achieving deep-ocean sustainability under the UN Sustainable Development Goals will require integration of climate consideration across all policy sectors.

Effects of widespread human disturbances in the marine environment suggest a new agenda for meiofauna research is needed

The response of an ecological community to a disturbance event, and its capacity to recover, are of major interest to ecologists, especially at a time of increasing frequencies and intensities of environmental change brought about by humans. Meiofauna, a group of small-sized organisms, are an abundant and ubiquitous component of seafloor communities that respond rapidly to environmental change. We summarise the available research on the response of metazoan meiofauna to the most widespread anthropogenic disturbances in the marine environment, including bottom fishing, the introduction of invasive species and anthropogenic climate change. We show that disturbance effects on habitats interact critically with effects on resident meiofauna species. Their responses are consistent with competitive replacement, where disparate disturbance effects on competing species drive shifts in dominance and intra- and interspecific interactions. The widespread replacement of habitat-specific ecological specialists by broadly-adapted ecological generalists and opportunists results in biotic and functional homogenisation of once disparate biotas. Anthropogenic disturbances may facilitate novel interactions among meiofauna species, and between meiofauna and other benthic organisms, but the number and breadth of these interactions is likely to be limited. Knowledge about the dependence of meiofauna species on their environment and on other benthic species has been growing. Future studies will be most meaningful if this knowledge is expanded alongside understanding the potential of locally adapted species to respond to shifts in environmental conditions.

Spatial and Temporal Variation in Deep-Sea Meiofauna at the LTER Observatory HAUSGARTEN in the Fram Strait (Arctic Ocean)

Time-series studies at the LTER (Long-Term Ecological Research) observatory HAUSGARTEN have yielded the world’s longest time-series on deep-sea meiofauna and thus provide a decent basis to investigate the variability in deep-sea meiobenthic communities at different spatial and temporal scales. The main objective of the present study was to investigate whether the sediment-dwelling meiofauna (size range: 32–1000 µm) is controlled by small-scale local environmental conditions, rather than large-scale differences between water depths. Univariate and multivariate statistical analyses, including distance-based linear models (DistLM) and redundancy analysis (dbRDA), revealed that due to their small size, meiofauna tend to mainly respond to micro-scale (centimeter) variations in environmental conditions in surface and subsurface sediment layers. Inter-annual temporal patterns among metazoan meiofauna at higher taxon levels revealed only a weak effect of time, and merely on the rare meiofauna taxa (<2% of the total meiofauna community) at HAUSGARTEN.

Protist diversity and function in the dark ocean - Challenging the paradigms of deep-sea ecology with special emphasis on foraminiferans and naked protists

The dark ocean and the underlying deep seafloor together represent the largest environment on this planet, comprising about 80% of the oceanic volume and covering more than two-thirds of the Earth's surface, as well as hosting a major part of the total biosphere. Emerging evidence suggests that these vast pelagic and benthic habitats play a major role in ocean biogeochemistry and represent an "untapped reservoir" of high genetic and metabolic microbial diversity. Due to its huge volume, the water column of the dark ocean is the largest reservoir of organic carbon in the biosphere and likely plays a major role in the global carbon budget. The dark ocean and the seafloor beneath it are also home to a largely enigmatic food web comprising little-known and sometimes spectacular organisms, mainly prokaryotes and protists. This review considers the globally important role of pelagic and benthic protists across all protistan size classes in the deep-sea realm, with a focus on their taxonomy, diversity, and physiological properties, including their role in deep microbial food webs. We argue that, given the important contribution that protists must make to deep-sea biodiversity and ecosystem processes, they should not be overlooked in biological studies of the deep ocean.

Ecological variables for developing a global deep-ocean monitoring and conservation strategy

The deep sea (>200 m depth) encompasses >95% of the world's ocean volume and represents the largest and least explored biome on Earth (<0.0001% of ocean surface), yet is increasingly under threat from multiple direct and indirect anthropogenic pressures. Our ability to preserve both benthic and pelagic deep-sea ecosystems depends upon effective ecosystem-based management strategies and monitoring based on widely agreed deep-sea ecological variables. Here, we identify a set of deep-sea essential ecological variables among five scientific areas of the deep ocean: (1) biodiversity; (2) ecosystem functions; (3) impacts and risk assessment; (4) climate change, adaptation and evolution; and (5) ecosystem conservation. Conducting an expert elicitation (1,155 deep-sea scientists consulted and 112 respondents), our analysis indicates a wide consensus amongst deep-sea experts that monitoring should prioritize large organisms (that is, macro- and megafauna) living in deep waters and in benthic habitats, whereas monitoring of ecosystem functioning should focus on trophic structure and biomass production. Habitat degradation and recovery rates are identified as crucial features for monitoring deep-sea ecosystem health, while global climate change will likely shift bathymetric distributions and cause local extinction in deep-sea species. Finally, deep-sea conservation efforts should focus primarily on vulnerable marine ecosystems and habitat-forming species. Deep-sea observation efforts that prioritize these variables will help to support the implementation of effective management strategies on a global scale.