Interaction between top-down and bottom-up control in marine food webs

Inferring Species Interactions From Co-occurrence Networks With Environmental DNA Metabarcoding Data in a Coastal Marine Food Web

A good understanding of biotic interactions is necessary to accurately predict the vulnerability of ecosystems to climate change. Recently, co-occurrence networks built from environmental DNA (eDNA) metabarcoding data have arisen as a tool to explore interspecific interactions in ecological communities exposed to different human and environmental pressures. Such networks can identify environmentally driven relationships in microbial and eukaryotic communities, but whether inferred co-occurrences robustly represent biotic interactions remains unclear. Here, we tackle this challenge and compare spatio-temporal variability in the structure and complexity of inferred co-occurrence networks and food webs, using 60 eDNA samples covering vertebrates and other eukaryotes in a North Sea coastal ecosystem. We compare topological characteristics and identify highly connected species across spatial and temporal subsets to evaluate variance in community composition and structure. We find consistent trends in topological characteristics across eDNA-derived co-occurrence networks and food webs that support some ability for the co-occurrence networks to detect real ecological processes, despite trophic interactions forming a minority of significant co-occurrences. The lack of significant trophic interactions detected in co-occurrence networks may result from ecological complexities, such as generalist predators having flexible interactions or behavioural partitioning, the inability to distinguish age class with eDNA or co-occurrences being driven by non-trophic or abiotic interactions. We find support for using eDNA-derived co-occurrence networks to infer ecological interactions, but further work is needed to assess their power to reliably detect and differentiate different interaction types and overcome methodological limitations, such as species detection uncertainties, which could influence inferred ecosystem complexity.

Fish Community Resource Utilization Reveals Benthic-Pelagic Trophic Coupling Along Depth Gradients in the Beibu Gulf, South China Sea

Benthic-pelagic coupling is a key approach to studying the structure and energy dynamics of shallow marine food webs. The movement and foraging patterns of consumers are major drivers of nutrient and energy distribution in ecosystems and are critical for maintaining ecosystem stability. To better understand the energy coupling of consumers between coastal marine habitats, this study employed a Bayesian mixture model using SC and SI data. By classifying functional groups based on taxonomy, morphological traits, and feeding ecology similarities, we constructed a trophic network and analyzed the changes in fish feeding patterns and the dynamics of benthic-pelagic coupling across environmental gradients. The results show that the primary carbon sources in the Beibu Gulf are phytoplankton, particulate organic matter (POM), and sediment organic matter (SOM), with phytoplankton contributing the most. Pelagic food subsidies dominate the food web. Small sized, abundant planktivorous and benthivorous fish act both as predators and important prey, transferring carbon and energy derived from both benthic and pelagic zones to higher trophic-levels. Larger, higher-trophic-level piscivorous fish serve as key energy couplers, preying on organisms from various habitats. Depth and chlorophyll-a (Chl-a) are the two key variables influencing the trophic structure of fish, with opposite gradient patterns observed for each. Along the depth gradient, fish exhibit clear adaptive foraging strategies. As water depth increases, fish tend to forage more within their specific habitat (either benthic or pelagic), with prey types continually changing, leading to a gradual reduction in the strength of benthic-pelagic trophic coupling. This study reveals the spatial resource utilization patterns and adaptive foraging strategies of fish in the Beibu Gulf, providing deeper insights into the structure and spatial variation of food webs. It also enhances our understanding of ecosystem responses to human pressures and global changes, offering valuable perspectives for predicting these responses.

Decreases in pH from effluent had a devastating but reversible impact on the coastal plankton communities

An event of releasing untreated effluent caused serious decreases in surface seawater pH from 8.1 to lower than 7.5 in seven years and increased back to prior levels after 15 years. It gives us a rare natural experiment to examine the impacts of decreases in pH on the marine plankton communities (phytoplanktons, zooplanktons, shrimp larvae, crab larvae, fish eggs, and larvae) in the natural environment. Observed decreases in pH had a nonlinear effect ubiquitous on all plankton groups, leading to a reduction of approximately 50 % in their density and abundance compared to the level at pH 8.1. Non-linear responses of planktons implied the existence of specific groups more robust to decreases in pH. As pH bounced back to normal levels, the density and abundance of the plankton communities also recovered, further indicating that the negative impacts of decreases in pH on the marine plankton communities were reversible.

The Anthropocene and the biodiversity crisis: an eco-evolutionary perspective

A major facet of the Anthropocene is global change, such as climate change, caused by human activities, which drastically affect biodiversity with all-scale declines and homogenization of biotas. This crisis does not only affect the ecological dynamics of biodiversity, but also its evolutionary dynamics, including genetic diversity, an aspect that is generally neglected. My tenet is therefore to consider biodiversity dynamics from an eco-evolutionary perspective, i.e. explicitly accounting for the possibility of rapid evolution and its feedback on ecological processes and the environment. I represent the impact of the various avatars of global change in a temporal perspective, from pre-industrial time to the near future, allowing to visualize their dynamics and to set desired values that should not be trespassed for a given time (e.g., +2 °C for 50 years from now). After presenting the impact of various stressors (e.g., climate change) on biodiversity, this representation is used to heuristically show the relevance of an eco-evolutionary perspective: (i) to analyze how biodiversity will respond to the stressors, for example by seeking out more suitable conditions or adapting to new conditions; (ii) to serve in predictive exercises to envision future dynamics (decades to centuries) under stressor impact; (iii) to propose nature-based solutions to the crisis. Significant obstacles stand in the way of the development of such an approach, in particular the general lack of interest in intraspecific diversity, and perhaps more generally a lack of understanding that, we, humans, are only a modest part of biodiversity.

Potential feeding sites for seabirds and marine mammals reveal large overlap with offshore wind energy development worldwide

Offshore wind energy is experiencing accelerated growth worldwide to support global net zero ambitions. To ensure responsible development and to protect the natural environment, it is essential to understand and mitigate the potential impacts on wildlife, particularly on seabirds and marine mammals. However, fully understanding the effects of offshore wind energy production requires characterising its global geographic occurrence and its potential overlap with marine species. This study aims to generate risk maps of interaction between offshore and seabirds and marine mammals based on the distribution of their potential foraging areas. These maps will allow visualisation of the spatial occurrence of risk and its severity for both groups. To achieve it, we built a structural equation model of three levels (plankton, fish, and top predators) to predict small-ranged seabirds and marine mammal spatial richness as a proxy of potential feeding sites. Later, we overlapped these maps with global wind density (as a proxy of potential offshore development areas) to identify risk areas. Our results pointed to simplified trophic chain models that effectively explained the richness of small-ranged seabirds and marine mammals. Our risk maps reveal a high overlap with potential offshore wind development. Low-risk areas were located mainly in so-called Global North countries, suggesting vast knowledge gaps and potential hidden risks in these areas. Importantly, the highest risk values were found outside the Marine Protected Areas for both groups, underscoring the necessity for strategic planning and the expansion of renewable energy sources to avert potential conservation challenges in the future.

Top-down predators shape soil bacterial community composition while bottom-up nutrients drive bacterial abundance

Although the top-down and bottom-up concept in microbial food-webs has been a primary interest in ecology, less is still known about it in soil ecosystems. Protists are the primary top-down predators of bacterial communities, altering their compositions, while the bottom-up resources are the primary factors limiting bacterial growth. Here, we hypothesized that the top-down predators modulate soil bacterial community composition, while the bottom-up nutrients control the bacterial growth and population. To precisely control nutrient levels, we used an inert soil substitute consisting of a combination of calcined clay and sand. Nutrients equivalent to the reference paddy field soil were added to microcosms as a control treatment. To investigate the effects of C, N, and P, six additional bottom-up treatments in the absence and double amounts of the nutrients were prepared. Four top-down treatments (no protist addition, Acanthamoeba castellanii, Vermamoeba vermiformis, and Heteromita globosa) were set up for each bottom-up treatment. A total of 252 microcosms under 28 treatments were incubated. Bacterial communities were analyzed using high-throughput sequencing and real-time PCR in the 1st, 3rd, and 5th weeks. The results revealed that the top-down predators significantly altered the bacterial community composition, and the bacterial population was predominantly controlled by the bottom-up nutrients. Analysis of absolute abundance data demonstrated that both top-down and bottom-up factors shaped the bacterial community structure (community composition and population). Random forest analysis classified the amplicon sequence variants associated with the treatments, showing that mostly similar families were affected by both bottom-up and top-down factors. In conclusion, the results of this study fully supported our hypothesis that top-down predators alter community composition, while bottom-up factors influence bacterial population dynamics.

Predictors of long-term variability in NE Atlantic plankton communities

Anthropogenic pressures such as climate change and nutrient pollution are causing rapid changes in the marine environment. The relative influence of drivers of change on the plankton community remains uncertain, and this uncertainty is limiting our understanding of sustainable levels of human pressures. Plankton are the primary energy resource in marine food webs and respond rapidly to environmental changes, representing useful indicators of shifts in ecosystem structure and function. Categorising plankton into broad groups with similar characteristics, known as "lifeforms", can be useful for understanding ecological patterns related to environmental change and for assessing the state of pelagic habitats in accordance with the EU Marine Strategy Framework Directive and the OSPAR Commission, which mandates protection of the North-East Atlantic. We analysed 29 years of Continuous Plankton Recorder data (1993-2021) from the North-East Atlantic to examine how trends in plankton lifeform abundance changed in relation to one another and across gradients of environmental change associated with human pressures. Random forest models predicted between 57 % and 80 % of the variability in lifeform abundance, based on data not used to train the models. Observed variability was mainly explained by trends in other lifeforms, with mainly positively correlated trends, indicating bottom-up control and/or shared responses to environmental variability were prevalent. Longitude, bathymetry, mixed layer depth, the nitrogen-to‑phosphorus ratio, and temperature were also significant predictors. However, contrasting influences of environmental drivers were detected. For example, small copepod abundance increased in warmer conditions whereas meroplankton, large copepods and fish larvae either decreased or were unchanged. Our findings highlight recent changes in stratification, reflected by variation in mixed layer depth, and imbalanced nutrient ratios are affecting multiple lifeforms, impacting the North-East Atlantic plankton community. To achieve environmental improvements in North-East Atlantic pelagic habitats, it is crucial that we continue to address climate change and reduce nutrient pollution.

Exploring changes in epibenthic food web structure after implementation of a water-sediment regulation scheme

The water-sediment regulation scheme (WSRS) in the Yellow River is a large-scale initiative to artificially regulate the flow of sediment to the sea, thereby increasing the flood-carrying capacity of the riverbed and reservoirs. Currently, systematic studies on ecological impacts of WSRS at ecosystem-level are still insufficient. This limitation hampers the pursuit of a 'green', healthy, ecosystem and sustainable fisheries. This study constructed the topological structure of food webs in the Yellow River Estuary (YRE) before, during, and after implementation of the WSRS, analyzing changes in food web complexity and key species based on fishery independent data collected in June, July, and August 2023. The results showed decreases from 59 to 52 in the number of trophic species, and from 539 to 395 in the number of feeding relationships after WSRS implementation. Increased node density, decreased link density, and decreased structural complexity index also indicated a simplification of the YRE food web structure after WSRS implementation. The relatively low value of the characteristic path length indicated that the YRE food web has high connectivity with short path lengths of trophic interaction. Based on the ranking of various topological indices, Japanese seabass (Lateolabrax japonicus) and mantis shrimp (Oratosquilla oratoria) persisted as the key species. Our research revealed limited potential ecological effects that WSRS may have on the YRE food web over a short period. The effects did not persist, and omnivorous key species were identified as being critical in contributing to overall system resilience. These omnivores with high complexity, connectivity and low path lengths allowed the food web to quickly dissipate the exogenous disruption from the WSRS. This provides a theoretical basis for assessing the future ecological health and scientific management of YRE fisheries and similar large estuaries for which sediment transport mitigation is under consideration.

How often are ecosystems top-down controlled? Experiments in grassland, grasshopper, and bird systems over time and space

Ecosystems are frequently considered to be controlled by predation (top-down). Experiments examined this in four bird/spider/grasshopper/prairie habitats over 34 years, employing in each habitat three 100 m2 bird exclosures and controls (121 habitat/year cases) where plant, grasshopper, and spider abundances were measured. Top-down control (plants decrease and grasshoppers increase with bird exclusion) was observed in only 13.2% of cases, while plants increased and grasshoppers decreased in 33.1% of cases, plants decreased and grasshoppers decreased in 25.6% of cases, and plants increased and grasshoppers increased in 28.1% of cases. Therefore, top-down control was not common and system responses were not constant, but varied among sites, years, and directionally over time with climate change. This diversity of responses is expected given the variety of underlying processes in complex ecosystems. For example, decision tree/discriminant analysis found that plant decreases and increases with bird exclusion were correctly identified in 78.3% of cases by grasshopper hatchling abundance, plant cover, and annual net primary production (ANPP), while grasshopper decreases and increases with bird exclusion were correctly identified in 76.7% of cases by edible plant biomass per grasshopper hatchling, grasshopper hatchling abundance, and large grasshopper abundance. Analysis of other system-wide terrestrial trophic experiments indicates that the variety of responses observed by us over time and space may be common so that system-wide trophic responses may, in general, be more variable than either top-down or bottom-up as often considered.

The potential impacts of exploitation on the ecological roles of fish species targeted by fisheries: A multifunctional perspective

Examining ecosystem functioning through the lens of trait diversity serves as a valuable proxy. It offers crucial insights into how exploitation affects the specific ecological roles played by fisheries targeted species. The present study investigates the potential impacts of exploitation on the ecological roles of fish species targeted by fisheries through an examination of trait diversity. It focuses on the trait diversity of fish landed by local and coastal fleets in the Azores archipelago over the past four decades. Fourteen functional traits were merged to data on fish assemblages landed by both fishing fleets from 1980 to 2020. These traits corresponded to four fundamental fish functions: habitat use, locomotion, feeding and life history. Variability in functional diversity metrics (i.e., functional richness- FRic, functional evenness- FEve, functional divergence-FDiv, and functional dispersion- FDis) among fleets, functions and across decades was assessed using null models. The results revealed similar trait diversity between assemblages landed by local and coastal fishing fleets with overall trait diversity remaining relatively stable over time. However, fishery activities targeted a wide range of functional traits. Additionally, seasonal availability and increased catches of certain fish species can significantly alter trait diversity and their associated functions. The findings highlight the importance of addressing fishing impacts on species traits and their ecological roles, which is crucial for long-term fisheries and ecological sustainability.

Trait-based insights into sustainable fisheries: A four-decade perspective in Azores archipelago

The trait-based approach provides a powerful perspective for analyzing fisheries and their potential impact on marine ecological processes, offering crucial insights into sustainability and ecosystem functioning. This approach was applied to investigate trends in fish assemblages landed by both local and coastal fishing fleets in the Azores archipelago over the past four decades (1980s, 1990s, 2000s, and 2010s). A matrix of ten traits was built to assess functional redundancy (Fred), functional over-redundancy (FOve), and functional vulnerability (FVul) for the fish assemblages caught by every fishing fleet in each decade. The susceptibility of the Azorean fishery to negative impacts on ecosystem functioning was evidenced by low FRed (<1.5 species per functional entity) and high FVul (exceeding 70 %). However, there is reason for optimism, as temporal trends in the 2000s and 2010s showed an increase in FRed and FOve along with a significant decrease in FVul. These trends indicate the adaptation of the fishery to new target species and, notably, the effectiveness of local fish regulations in mitigating the impacts of targeting functionally important species, such as Elasmobranchii, over the past two decades. These regulations have played a pivotal role in preserving ecological functions within the ecosystem, as well as in managing the removal of high biomass of key important species (e.g., Trachurus picturatus, Pagellus bogaraveo, and Katsuwonus pelamis) from the ecosystem. This study contributes to understanding the delicate balance between fishing pressure, ecological resilience, and sustainable resource management in Azorean waters. It also highlights the importance of continued monitoring, adaptive management, and the enforcement of local fishing regulations to ensure the long-term health and sustainability of the fishery and the broader marine ecosystem.

Trophic plasticity of a tropical seabird revealed through DNA metabarcoding and stable isotope analyses

DNA metabarcoding and stable isotope analysis have significantly advanced our understanding of marine trophic ecology, aiding systematic research on foraging habits and species conservation. In this study, we employed these methods to analyse faecal and blood samples, respectively, to compare the trophic ecology of two Red-billed Tropicbird (Phaethonaethereus; Linnaeus, 1758) colonies on Mexican islands in the Pacific. Trophic patterns among different breeding stages were also examined at both colonies. Dietary analysis reveals a preference for epipelagic fish, cephalopods, and small crustaceans, with variations between colonies and breeding stages. Isotopic values (δ15N and δ13C) align with DNA metabarcoding results, with wider niches during incubation stages. Differences in diet are linked to environmental conditions and trophic plasticity among breeding stages, influenced by changing physiological requirements and prey availability. Variations in dietary profiles reflect contrasting environmental conditions affecting local prey availability.

Leveraging Bayesian network to reveal the importance of water level in a shallow lake ecosystem: A study based on Paleo-diatom and fish community

Lake ecological processes and nutrient patterns are increasingly affected by water level variation around the world. Still, the long-term effects of water level change on lake ecosystems and their implications for suitable lake level management have rarely been studied. Here, we studied the ecosystem dynamics of a mesotrophic lake located in the cold and arid region of northern China based on long-term paleo-diatom and fishery records. Utilizing a novel Copula-Bayesian Network model, possible hydrological-driven ecosystem evolution was discussed. Results show that increased nutrient concentration caused by the first water level drop in the early 1980s incurred a transition of sedimental diatoms towards pollution-resistant species, and the following water level rise in the mid-1980s brought about considerable external loading, which attributed to eutrophication and caused the miniaturization of fishery structure. In the 21st century, a continuous water level plummet further reduced the sediment diatom biomass and the fish biomass by altering nutrient concentration. However, with the implementation of the water diversion project in 2011, oligotrophic species increased, and the ecosystem developed for the better. From the perspective of water quality protection requirements and the ecological well-being of Lake Hulun, the appropriate water level should be around 542.42-544.15 m. In summary, our study highlights the coupling effect of water level and water quality on Lake Hulun ecosystem and gives shed to lake water level operation and management under future climate change and human activities.

Oil and gas platforms degrade benthic invertebrate diversity and food web structure

Oil and gas exploitation introduces toxic contaminants such as hydrocarbons and heavy metals to the surrounding sediment, resulting in deleterious impacts on marine benthic communities. This study combines benthic monitoring data over a 30-year period in the North Sea with dietary information on >1400 taxa to quantify the effects of active oil and gas platforms on benthic food webs using a multiple before-after control-impact experiment. Contamination from oil and gas platforms caused declines in benthic food web complexity, community abundance, and biodiversity. Fewer trophic interactions and increased connectance indicated that the community became dominated by generalists adapting to alternative resources, leading to simpler but more connected food webs in contaminated environments. Decreased mean body mass, shorter food chains, and the dominance of small detritivores such as Capitella capitata near to structures suggested a disproportionate loss of larger organisms from higher trophic levels. These patterns were associated with concentrations of hydrocarbons and heavy metals that exceed OSPAR's guideline thresholds of sediment toxicity. This study provides new evidence to better quantify and manage the environmental consequences of oil and gas exploitation at sea.

A systematic toxicologic study of polycyclic aromatic hydrocarbons on aquatic organisms via food-web bioaccumulation

Pollution-induced declines in fishery resources restrict the sustainable development of fishery. As a kind of typical environmental pollutant, the mechanism of polycyclic aromatic hydrocarbons (PAHs) facilitating fishery resources declines needs to be fully illustrated. To determine how PAHs have led to declines in fishery resources, a systematic toxicologic analysis of the effects of PAHs on aquatic organisms via food-web bioaccumulation was performed in the Pearl River and its estuary. Overall, PAH bioaccumulation in aquatic organisms was correlated with the trophic levels along food-web, exhibiting as significant positive correlations were observed between PAHs concentration and the trophic levels of fishes in the Pearl River Estuary. Additionally, waterborne PAHs exerted significant direct effects on dietary organisms (P < 0.05), and diet-borne PAHs subsequently exhibited significant direct effects on fish (P < 0.05). However, an apparent block effect was found in dietary organisms (e.g., zooplankton) where 33.49 % of the total system throughput (TST) was retained at trophic level II, exhibiting as the highest PAHs concentration, bioaccumulation factor (BAF), and biomagnification factor (BMF) of ∑15PAHs in zooplankton were at least eight-fold greater than those in fishes in both the Pearl River and its estuary, thereby waterborne PAHs exerted either direct or indirect effects on fishes that ultimately led to food-web simplification. Regardless of the block effect of dietary organisms, a general toxic effect of PAHs on aquatic organisms was observed, e.g., Phe and BaP exerted lethal effects on phytoplankton Chlorella pyrenoidosa and zooplankton Daphnia magna, and decreased reproduction in fishes Danio rerio and Megalobrama hoffmanni via activating the NOD-like receptors (NLRs) signaling pathway. Consequently, an assembled aggregate exposure pathway for PAHs revealed that increases in waterborne PAHs led to bioaccumulation of PAHs in aquatic organisms along food-web, and this in turn decreased the reproductive ability of fishes, thus causing decline in fishery resources.

Relative prevalence of top-down versus bottom-up control in planktonic ecosystem under eutrophication and climate change: A comparative study of typical bay and estuary

Eutrophication and climate change may affect the top-down versus bottom-up controls in aquatic ecosystems. However, the relative prevalence of the two controls in planktonic ecosystems along the eutrophication and climate gradients has rarely been addressed. Here, using the field surveys of 17 years in a typical bay and estuary, we test two opposite patterns of trophic control dominance and their response to regional temporal eutrophication and climate fluctuations. It was found that trophic control of planktonic ecosystems fluctuated between the dominance of top-down and bottom-up controls on time scales in both the bay and estuary studied. The relative prevalence of these two controls in both ecosystems was significantly driven directly by regional dissolved inorganic nitrogen but, for the estuary, also by the nonlinear effects of regional sea surface temperature. In terms of indirect pathways, community relationships (synchrony and grazing pressure) in the bay are driven by both regional dissolved inorganic nitrogen - soluble reactive phosphorus ratio and sea surface temperature, but this drive did not continue to be transmitted to the trophic control. Conversely, trophic control in estuary was directly related to grazing pressure and indirectly related to synchrony. These findings support the view that eutrophication and climate drive the relative prevalence of top-down versus bottom-up controls at ecosystem and temporal scales in planktonic ecosystems, which has important implications for predicting the potential impacts of anthropogenic and environmental perturbations on the structure and function of marine ecosystems.

Local and landscape factors shape alpha and beta trophic interaction diversity in urban gardens

Promoting urban green spaces is an effective strategy to increase biodiversity in cities. However, our understanding of how local and landscape factors influence trophic interactions in these urban contexts remains limited. Here, we sampled cavity-nesting bees and wasps and their natural enemies within 85 urban gardens in Zurich (Switzerland) to identify factors associated with the diversity and dissimilarity of antagonistic interactions in these communities. The proportions of built-up area and urban green area at small landscape scales (50 m radius), as well as the management intensity, sun exposure, plant richness and proportion of agricultural land at the landscape scale (250 m radius), were key drivers of interaction diversity. This increased interaction diversity resulted not only from the higher richness of host and natural enemy species, but also from species participating in more interactions. Furthermore, dissimilarity in community structure and interactions across gardens (beta-diversity) were primarily influenced by differences in built-up areas and urban green areas at the landscape scale, as well as by management intensity. Our study offers crucial insights for urban planning and conservation strategies, supporting sustainability goals by helping to understand the factors that shape insect communities and their trophic interactions in urban gardens.

Evaluating top-down, bottom-up, and environmental drivers of pelagic food web dynamics along an estuarine gradient

Identification of the key biotic and abiotic drivers within food webs is important for understanding species abundance changes in ecosystems, particularly across ecotones where there may be strong variation in interaction strengths. Using structural equation models (SEMs) and four decades of integrated data from the San Francisco Estuary, we investigated the relative effects of top-down, bottom-up, and environmental drivers on multiple trophic levels of the pelagic food web along an estuarine salinity gradient and at both annual and monthly temporal resolutions. We found that interactions varied across the estuarine gradient and that the detectability of different interactions depended on timescale. For example, for zooplankton and estuarine fishes, bottom-up effects appeared to be stronger in the freshwater upstream regions, while top-down effects were stronger in the brackish downstream regions. Some relationships (e.g., bottom-up effects of phytoplankton on zooplankton) were seen primarily at annual timescales, whereas others (e.g., temperature effects) were only observed at monthly timescales. We also found that the net effect of environmental drivers was similar to or greater than bottom-up and top-down effects for all food web components. These findings can help identify which trophic levels or environmental factors could be targeted by management actions to have the greatest impact on estuarine forage fishes and the spatial and temporal scale at which responses might be observed. More broadly, this study highlights how environmental gradients can structure community interactions and how long-term data sets can be leveraged to generate insights across multiple scales.

Decadal changes of macrofauna community in a semi-enclosed Bay of Yueqing in East China Sea

To reveal the long-term variation of macrofauna community in Yueqing Bay, an aquacultural bay famous for its shellfish culturing in the East China Sea, macrofauna samples were collected in three period from 2002 to 2003 and 2006-2007 to 2020-2021. The results show that macrofaunal community structure in this area has changed significantly (ANOSIM, p < 0.01) in nearly two decades with significant decreases in species number, biodiversity index and average biomass. Meanwhile, the taxa composition also changed significantly as the dominance of annelid increased while that of mollusks, echinoderms and vertebrates decreased. As a consequence of the variation of taxa composition and total biomass, macrofauna community showed a tendency of miniaturization as individuals with smaller body size and lower biomass dominated the community. According to the results of CCA analysis, temperature, salinity and dissolved oxygen content were the main environmental factors that restricted the species composition of macrofauna community. Further studies still needed to reveal the main reasons that cause the variation of macrofauna community. Overall, the results of this study suggest that the present status of Yueqing Bay benthic ecosystem is concerning from a macrobenthos perspective, as the biodiversity index and biomass of macrofauna decreased significantly. Effective measures should be taken in urgently to restrain the safety and function of coastal ecosystems.

Operationalizing a fisheries social-ecological system through a Bayesian belief network reveals hotspots for its adaptive capacity in the southern North sea

Fisheries social-ecological systems (SES) in the North Sea region confront multifaceted challenges stemming from environmental changes, offshore wind farm expansion, and marine protected area establishment. In this paper, we demonstrate the utility of a Bayesian Belief Network (BN) approach in comprehensively capturing and assessing the intricate spatial dynamics within the German plaice-related fisheries SES. The BN integrates ecological, economic, and socio-cultural factors to generate high-resolution maps of profitability and adaptive capacity potential (ACP) as prospective management targets. Our analysis of future scenarios, delineating changes in spatial constraints, economics, and socio-cultural aspects, identifies factors that will exert significant influence on this fisheries SES in the near future. These include the loss of fishing grounds due to the installation of offshore wind farms and marine protected areas, as well as reduced plaice landings due to climate change. The identified ACP hotspots hold the potential to guide the development of localized management strategies and sustainable planning efforts by highlighting the consequences of management decisions. Our findings emphasize the need to consider detailed spatial dynamics of fisheries SES within marine spatial planning (MSP) and illustrate how this information may assist decision-makers and practitioners in area prioritization. We, therefore, propose adopting the concept of fisheries SES within broader integrated management approaches to foster sustainable development of inherently dynamic SES in a rapidly evolving marine environment.

Dietary Shifts in the Adaptation to Changing Marine Resources: Insights from a Decadal Study on Greater Lizardfish (Saurida tumbil) in the Beibu Gulf, South China Sea

Understanding dietary behavior during the individual development of marine predators and its temporal variations elucidates how species adapt to changes in marine resources. This is crucial for predicting marine predators' habitat selection and the natural population's responses to environmental changes. The authors conducted a comparative analysis of dietary shift strategies and trophic level variations in Greater lizardfish (Saurida tumbil) in the Beibu Gulf during two distinct periods (2010 and 2020) using stomach content and stable isotope analysis methods. Possible driving factors for these changes were also explored. Changes in the fishery community structure and the decline in the abundance of primary prey resources have led the S. tumbil population to diversify their prey species, utilize alternative resources, and expand their foraging space. However, the species' foraging strategy, characterized by chasing and preying on schooling and pelagic prey, promoted stability in their feeding behavior across spatial and temporal scales. The main prey items remained demersal and pelagic fish species, followed by cephalopods and crustaceans. Similar to other generalist fish species, ontogenetic dietary shifts (ODSs) indicated a partial transition towards larger prey items. However, the timing and magnitude of the ODSs varied between the two periods, reflecting life-history variations and adaptive adjustments to environmental changes. In comparison to 2010, the population's mean body length (BL) increased in 2020, and the proportion of the population feeding on pelagic-neritic prey significantly increased. However, the δ15N values were lower, indicating that the shift in the ecological niche of preferred prey from demersal to pelagic-neritic was the primary cause of the decrease in trophic levels. In the future, we will conduct further quantitative research integrating the spatiotemporal data of both predators and prey to clarify the relationships between marine predators' feeding behavior, trophic levels, and changes in prey community structure.

Warmer temperatures trigger insecticide-associated pest outbreaks

BACKGROUND

Rising global temperatures are associated with emerging insect pests, reflecting earlier and longer insect activity, faster development, more generations per year and changing species' ranges. Insecticides are often the first tools available to manage these new threats. In the southeastern US, sweet potato whitefly (Bemisia tabaci) has recently become the major threat to vegetable production. We used data from a multi-year, regional whitefly monitoring network to search for climate, land use, and management correlates of whitefly activity.

RESULTS

Strikingly, whiteflies were detected earlier and grew more abundant in landscapes with greater insecticide use, but only when temperatures were also relatively warm. Whitefly outbreaks in hotter conditions were not associated with specific active ingredients used to suppress whiteflies, which would be consistent with a regional disruption of biocontrol following sprays for other pests. In addition, peak whitefly detections occurred earlier in areas with more vegetable production, but later with more cotton production, consistent with whiteflies moving among crops.

CONCLUSION

Altogether, our findings suggest possible links between warmer temperatures, more abundant pests, and frequent insecticide applications disrupting biological control, though this remains to be explicitly demonstrated. Climate-initiated pesticide treadmills of this type may become an increasingly common driver of emerging pest outbreaks as global change accelerates. © 2023 Society of Chemical Industry.

Monitoring indicator genes to assess antimicrobial resistance contamination in phytoplankton and zooplankton communities from the English Channel and the North Sea

Phytoplankton and zooplankton play a crucial role in marine ecosystems as the basis of the food webs but are also vulnerable to environmental pollutants. Among emerging pollutants, antimicrobial resistance (AMR) is a major public health problem encountered in all environmental compartments. However, the role of planktonic communities in its dissemination within the marine environment remains largely unexplored. In this study, we monitored four genes proposed as AMR indicators (tetA, blaTEM, sul1, and intI1) in phytoplankton and zooplankton samples collected in the English Channel and the North Sea. The indicator gene abundance was mapped to identify the potential sources of contamination. Correlation was assessed with environmental parameters to explore the potential factors influencing the abundance of AMR in the plankton samples. The prevalence in phytoplankton and zooplankton of sul1 and intI1, the most quantified indicator genes, ranged from 63 to 88%. A higher level of phytoplankton and zooplankton carrying these genes was observed near the French and English coasts in areas subjected to anthropogenic discharges from the lands but also far from the coasts. Correlation analysis demonstrated that water temperature, pH, dissolved oxygen and turbidity were correlated to the abundance of indicator genes associated with phytoplankton and zooplankton samples. In conclusion, the sul1 and intI1 genes would be suitable indicators for monitoring AMR contamination of the marine environment, either in phytoplankton and zooplankton communities or in seawater. This study fills a part of the gaps in knowledge about the AMR transport by marine phytoplankton and zooplankton, which may play a role in the transmission of resistance to humans through the marine food webs.

Emergent competition shapes top-down versus bottom-up control in multi-trophic ecosystems

Ecosystems are commonly organized into trophic levels-organisms that occupy the same level in a food chain (e.g., plants, herbivores, carnivores). A fundamental question in theoretical ecology is how the interplay between trophic structure, diversity, and competition shapes the properties of ecosystems. To address this problem, we analyze a generalized Consumer Resource Model with three trophic levels using the zero-temperature cavity method and numerical simulations. We derive the corresponding mean-field cavity equations and show that intra-trophic diversity gives rise to an effective "emergent competition" term between species within a trophic level due to feedbacks mediated by other trophic levels. This emergent competition gives rise to a crossover from a regime of top-down control (populations are limited by predators) to a regime of bottom-up control (populations are limited by primary producers) and is captured by a simple order parameter related to the ratio of surviving species in different trophic levels. We show that our theoretical results agree with empirical observations, suggesting that the theoretical approach outlined here can be used to understand complex ecosystems with multiple trophic levels.

The correlation between echinoderms diversity and physicochemical parameters in marine pollution: A case study of the Persian Gulf coastline

This study was conducted with the aim of investigating the correlation between echinoderms diversity and physicochemical parameters in the Persian Gulf coastline in Bushehr province in 4 seasons from March to December 2017. The physicochemical parameters including water temperature, dissolved oxygen (DO), electrical conductivity (EC), salinity, pH and turbidity were measured at each sampling location. The results showed a significant correlation between echinoderms diversity and physicochemical parameters. The correlation coefficient of the Astropecten polyacanthus species with the parameters of temperature, DO, EC, salinity and turbidity was reported as -0.41, 0.64, -0.25, -0.44 and 0.60 respectively. This coefficient for the Ophiothrix fragilis species was reported as -0.68, 0.70, -0.21, -0.36 and -0.55 respectively. The results demonstrated that the most sensitive species were Astropecten polyacanthus and Ophiothrix fragilis respectively. The different species of echinoderms can be used as biological indicators of pollution in evaluating the physicochemical quality of marine environments.

Ecosystem-level responses to multiple stressors using a time-dynamic food-web model: The case of a re-oligotrophicated coastal embayment (Saronikos Gulf, E Mediterranean)

Multiple stressors may combine in unexpected ways to alter the structure of ecological systems, however, our current ability to evaluate their ecological impact is limited due to the lack of information concerning historic trophic interactions and ecosystem dynamics. Saronikos Gulf is a heavily exploited embayment in the E Mediterranean that has undergone significant ecological alterations during the last 20 years including a shift from long-standing eutrophic to oligotrophic conditions in the mid-2000's. Here we used a historical Ecopath food-web model of Saronikos Gulf (1998-2000) and fitted the time-dynamic module Ecosim to biomass and catch time series for the period 2001-2020. We then projected the model forward in time from 2021 to 2050 under 8 scenarios to simulate ecosystem responses to the individual and combined effect of sea surface temperature increase, primary productivity shifts and fishing effort release. Incorporating trophic interactions, climate warming, fishing and primary production improved model fit, depicting that both fishing and the environment have historically influenced ecosystem dynamics. Retrospective simulations of the model captured historical biomass and catch trends of commercially important stocks and reproduced successfully the marked recovery of marine resources 10 years after re-oligotrophication. In future scenarios increasing temperature had a detrimental impact on most functional groups, increasing and decreasing productivity had a positive and negative effect on all respectively, while fishing reductions principally benefited top predators. Combined stressors produced synergistic or antagonistic effects depending on the direction and magnitude of change of each stressor in isolation while their overall impact seemed to be strongly mediated via food-web interactions. Such holistic approaches advance of our mechanistic understanding of ecosystems enabling us to develop more effective management strategies in the face of a rapidly changing marine environment.

Climate change affects the distribution of diversity across marine food webs

Many studies predict shifts in species distributions and community size composition in response to climate change, yet few have demonstrated how these changes will be distributed across marine food webs. We use Bayesian Additive Regression Trees to model how climate change will affect the habitat suitability of marine fish species across a range of body sizes and belonging to different feeding guilds, each with different habitat and feeding requirements in the northeast Atlantic shelf seas. Contrasting effects of climate change are predicted for feeding guilds, with spatially extensive decreases in the species richness of consumers lower in the food web (planktivores) but increases for those higher up (piscivores). Changing spatial patterns in predator-prey mass ratios and fish species size composition are also predicted for feeding guilds and across the fish assemblage. In combination, these changes could influence nutrient uptake and transformation, transfer efficiency and food web stability, and thus profoundly alter ecosystem structure and functioning.

Major declines in NE Atlantic plankton contrast with more stable populations in the rapidly warming North Sea

Plankton form the base of marine food webs, making them important indicators of ecosystem status. Changes in the abundance of plankton functional groups, or lifeforms, can affect higher trophic levels and can indicate important shifts in ecosystem functioning. Here, we extend this knowledge by combining data from Continuous Plankton Recorder and fixed-point stations to provide the most comprehensive analysis of plankton time-series for the North-East Atlantic and North-West European shelf to date. We analysed 24 phytoplankton and zooplankton datasets from 15 research institutions to map 60-year abundance trends for 8 planktonic lifeforms. Most lifeforms decreased in abundance (e.g. dinoflagellates: -5 %, holoplankton: -7 % decade-1), except for meroplankton, which increased 12 % decade-1, reflecting widespread changes in large-scale and localised processes. K-means clustering of assessment units according to abundance trends revealed largely opposing trend direction between shelf and oceanic regions for most lifeforms, with North Sea areas characterised by increasing coastal abundance, while abundance decreased in North-East Atlantic areas. Individual taxa comprising each phytoplankton lifeform exhibited similar abundance trends, whereas taxa grouped within zooplankton lifeforms were more variable. These regional contrasts are counterintuitive, since the North Sea which has undergone major warming, changes in nutrients, and past fisheries perturbation has changed far less, from phytoplankton to fish larvae, as compared to the more slowly warming North-East Atlantic with lower nutrient supply and fishing pressure. This more remote oceanic region has shown a major and worrying decline in the traditional food web. Although the causal mechanisms remain unclear, declining abundance of key planktonic lifeforms in the North-East Atlantic, including diatoms and copepods, are a cause of major concern for the future of food webs and should provide a red flag to politicians and policymakers about the prioritisation of future management and adaptation measures required to ensure future sustainable use of the marine ecosystem.

Gadiform species display dietary shifts in the Celtic Sea

Global changes, through their impacts on ecosystem trophic structures, are behind regime shifts and cascading effects, and could result in the reorganization of whole ecosystems. The Celtic Sea is a temperate sea at risk of the above because of the interplay between climate change and fisheries. This sea has only displayed slight changes in species diversity between the late 20th century and the present day. However, this apparent stability in species diversity could be hiding structural transformations, including the rearrangement of trophic relationships. Historical stomach content database offers the opportunity to investigate changes in ecosystem trophic structure. Based on such database, this study explored shifts in the feeding habits of gadiform species in the Celtic Sea in the 1980s, 1990s, and 2010s. To this end, it examined dietary generalism and composition for four top predator fish species. During the target period, generalists maintained their diets, while specialists adopted more generalist diets. There were also decreases in frequencies of occurrence of certain fishes within the diets of gadiform species. These recent changes in trophic structure organization have likely been caused by the influence of global changes on both top-down and bottom-up processes that occurred in the Celtic Sea.

Fishery catch is affected by geographic expansion, fishing down food webs and climate change in Aotearoa, New Zealand

Historical fishing effort has resulted, in many parts of the ocean, in increasing catches of smaller, lower trophic level species once larger higher trophic level species have been depleted. Concurrently, changes in the geographic distribution of marine species have been observed as species track their thermal affinity in line with ocean warming. However, geographic shifts in fisheries, including to deeper waters, may conceal the phenomenon of fishing down the food web and effects of climate warming on fish stocks. Fisheries-catch weighted metrics such as the Mean Trophic Level (MTL) and Mean Temperature of the Catch (MTC) are used to investigate these phenomena, although apparent trends of these metrics can be masked by the aforementioned geographic expansion and deepening of fisheries catch across large areas and time periods. We investigated instances of both fishing down trophic levels and climate-driven changes in the geographic distribution of fished species in New Zealand waters from 1950-2019, using the MTL and MTC. Thereafter, we corrected for the masking effect of the geographic expansion of fisheries within these indices by using the Fishing-in-Balance (FiB) index and the adapted Mean Trophic Level (aMTL) index. Our results document the offshore expansion of fisheries across the New Zealand Exclusive Economic Zone (EEZ) from 1950-2019, as well as the pervasiveness of fishing down within nearshore fishing stock assemblages. We also revealed the warming of the MTC for pelagic-associated fisheries, trends that were otherwise masked by the depth- and geographic expansion of New Zealand fisheries across the study period.

Trophic amplification: A model intercomparison of climate driven changes in marine food webs

Marine animal biomass is expected to decrease in the 21st century due to climate driven changes in ocean environmental conditions. Previous studies suggest that the magnitude of the decline in primary production on apex predators could be amplified through the trophodynamics of marine food webs, leading to larger decreases in the biomass of predators relative to the decrease in primary production, a mechanism called trophic amplification. We compared relative changes in producer and consumer biomass or production in the global ocean to assess the extent of trophic amplification. We used simulations from nine marine ecosystem models (MEMs) from the Fisheries and Marine Ecosystem Models Intercomparison Project forced by two Earth System Models under the high greenhouse gas emissions Shared Socioeconomic Pathways (SSP5-8.5) and a scenario of no fishing. Globally, total consumer biomass is projected to decrease by 16.7 ± 9.5% more than net primary production (NPP) by 2090-2099 relative to 1995-2014, with substantial variations among MEMs and regions. Total consumer biomass is projected to decrease almost everywhere in the ocean (80% of the world's oceans) in the model ensemble. In 40% of the world's oceans, consumer biomass was projected to decrease more than NPP. Additionally, in another 36% of the world's oceans consumer biomass is expected to decrease even as projected NPP increases. By analysing the biomass response within food webs in available MEMs, we found that model parameters and structures contributed to more complex responses than a consistent amplification of climate impacts of higher trophic levels. Our study provides additional insights into the ecological mechanisms that will impact marine ecosystems, thereby informing model and scenario development.

Life history optimisation drives latitudinal gradients and responses to global change in marine fishes

Within many species, and particularly fish, fecundity does not scale with mass linearly; instead, it scales disproportionately. Disproportionate intraspecific size-reproduction relationships contradict most theories of biological growth and present challenges for the management of biological systems. Yet the drivers of reproductive scaling remain obscure and systematic predictors of how and why reproduction scaling varies are lacking. Here, we parameterise life history optimisation model to predict global patterns in the life histories of marine fishes. Our model predict latitudinal trends in life histories: Polar fish should reproduce at a later age and show steeper reproductive scaling than tropical fish. We tested and confirmed these predictions using a new, global dataset of marine fish life histories, demonstrating that the risks of mortality shape maturation and reproductive scaling. Our model also predicts that global warming will profoundly reshape fish life histories, favouring earlier reproduction, smaller body sizes, and lower mass-specific reproductive outputs, with worrying consequences for population persistence.

High trophic level feedbacks on global ocean carbon uptake and marine ecosystem dynamics under climate change

Despite recurrent emphasis on their ecological and economic roles, the importance of high trophic levels (HTLs) on ocean carbon dynamics, through passive (fecal pellet production, carcasses) and active (vertical migration) processes, is still largely unexplored, notably under climate change scenarios. In addition, HTLs impact the ecosystem dynamics through top-down effects on lower trophic levels, which might change under anthropogenic influence. Here we compare two simulations of a global biogeochemical-ecosystem model with and without feedbacks from large marine animals. We show that these large marine animals affect the evolution of low trophic level biomasses, hence net primary production and most certainly ecosystem equilibrium, but seem to have little influence on the 21st-century anthropogenic carbon uptake under the RCP8.5 scenario. These results provide new insights regarding the expectations for trophic amplification of climate change through the marine trophic chain and regarding the necessity to explicitly represent marine animals in Earth System Models.

Seasonal bacterial niche structures and chemolithoautotrophic ecotypes in a North Atlantic fjord

Quantifying the temporal change of bacterial communities is essential to understanding how both natural and anthropogenic pressures impact the functions of coastal marine ecosystems. Here we use weekly microbial DNA sampling across four years to show that bacterial phyla have distinct seasonal niches, with a richness peak in winter (i.e., an inverse relationship with daylength). Our results suggest that seasonal fluctuations, rather than the kinetic energy or resource hypotheses, dominated the pattern of bacterial diversity. These findings supplement those from global analyses which lack temporal replication and present few data from winter months in polar and temperate regions. Centered log-ratio transformed data provided new insights into the seasonal niche partitioning of conditionally rare phyla, such as Modulibacteria, Verrucomicrobiota, Synergistota, Deinococcota, and Fermentibacterota. These patterns could not be identified using the standard practice of ASV generation followed by rarefaction. Our study provides evidence that five globally relevant ecotypes of chemolithoautotrophic bacteria from the SUP05 lineage comprise a significant functional group with varying seasonal dominance patterns in the Bedford Basin.

Linking animal behavior to ecosystem change in disturbed environments

Environmental disturbances often cause individuals to change their behavior. The behavioral responses can induce a chain of reactions through the network of species interactions, via consumptive and trait mediated connections. Given that species interactions define ecosystem structure and functioning, changes to these interactions often have ecological repercussions. Here, we explore the transmission of behavioral responses through the network of species interactions, and how the responses influence ecological conditions. We describe the underlying mechanisms and the ultimate impact that the behavioral responses can have on ecosystem structure and functioning, including biodiversity and ecosystems stability and services. We explain why behavioral responses of some species have a larger impact than that of others on ecosystems, and why research should focus on these species and their interactions. With the work, we synthesize existing theory and empirical evidence to provide a conceptual framework that links behavior responses to altered species interactions, community dynamics, and ecosystem processes. Considering that species interactions link biodiversity to ecosystem functioning, a deeper understanding of behavioral responses and their causes and consequences can improve our knowledge of the mechanisms and pathways through which human activities alter ecosystems. This knowledge can improve our ability to predict the effects of ongoing disturbances on communities and ecosystems and decide on the interventions needed to mitigate negative effects.

Amino acid nitrogen and carbon isotope data: Potential and implications for ecological studies

Explaining food web dynamics, stability, and functioning depend substantially on understanding of feeding relations within a community. Bulk stable isotope ratios (SIRs) in natural abundance are well-established tools to express direct and indirect feeding relations as continuous variables across time and space. Along with bulk SIRs, the SIRs of individual amino acids (AAs) are now emerging as a promising and complementary method to characterize the flow and transformation of resources across a diversity of organisms, from microbial domains to macroscopic consumers. This significant AA-SIR capacity is based on empirical evidence that a consumer's SIR, specific to an individual AA, reflects its diet SIR coupled with a certain degree of isotopic differences between the consumer and its diet. However, many empirical ecologists are still unfamiliar with the scope of applicability and the interpretative power of AA-SIR. To fill these knowledge gaps, we here describe a comprehensive approach to both carbon and nitrogen AA-SIR assessment focusing on two key topics: pattern in AA-isotope composition across spatial and temporal scales, and a certain variability of AA-specific isotope differences between the diet and the consumer. On this basis we review the versatile applicability of AA-SIR to improve our understanding of physiological processes as well as food web functioning, allowing us to reconstruct dominant basal dietary sources and trace their trophic transfers at the specimen and community levels. Given the insightful and opportunities of AA-SIR, we suggest future applications for the dual use of carbon and nitrogen AA-SIR to study more realistic food web structures and robust consumer niches, which are often very difficult to explain in nature.

Impacts of nutrient reduction on temporal β-diversity of rotifers: A 19-year limnology case study on Lake Wuli, China

There have been many studies on the effects of eutrophication on beta diversity (β-diversity) of species assemblages. However, few studies have focused on the effects of nutrient reduction on β-diversity and community structure, and long-time series analyses are particularly scarce. We conducted a 19-year case study on the impacts of management intervention on the temporal β-diversity of aquatic grazers in a lake at the Yangtze River Basin. In our study, we compared the changes in temporal β-diversity as well as its two components, nestedness and turnover, and the synchrony of the rotifer community after management intervention. Our results showed that while the abundance of some sensitive species increased, there was no trend in species richness. Moreover, both the seasonality and interannual stabilities of rotifer assemblages increased. The species synchrony decreased in both spring and summer after management intervention. We also found that management intervention significantly reduced nutrient concentrations but not water clarity and phytoplankton abundance. The total nitrogen (TN): total phosphorous (TP) ratio was reduced after management intervention, causing an increase in the abundance of cyanobacteria that may contribute to the increase of rotifer synchrony in autumn. Our results imply that stable environmental fluctuations after management intervention may increase temporal β-diversity and stability of herbivorous assemblages. However, imbalanced changes in TN and TP after management intervention may weaken the top-down control of zooplankton on phytoplankton and slow down water clarity improvement.

The economic tradeoffs and ecological impacts associated with a potential mesopelagic fishery in the California Current

The ocean's mesopelagic zone (200-1000 m) remains one of the most understudied parts of the ocean despite knowledge that mesopelagic fishes are highly abundant. Apex predators from the surface waters are known to consume these fishes, constituting an important ecological interaction. Some countries have begun exploring the potential harvest of mesopelagic fishes to supply fishmeal and fish oil markets due to the high fish abundance in the mesopelagic zone compared with overfished surface waters. This study explored the economic and ecological implications of a moratorium on the harvest of mesopelagic fishes such as lanternfish off the US West Coast, one of the few areas where such resources are managed. We adapted a bioeconomic decision model to examine the tradeoffs between the values gained from a hypothetical mesopelagic fishery with the potential values lost from declines in predators of mesopelagic fishes facing a reduced prey resource. The economic rationale for a moratorium on harvesting mesopelagics was sensitive both to ecological relationships and the scale of the nonmarket values attributed to noncommercial predators. Using a California Current-based ecological simulation model, we found that most modeled predators of mesopelagic fishes increased in biomass even under high mesopelagic harvest rates, but the changes (either increases or decreases) were small, with relatively few predators responding with more than a 10% change in their biomass. While the ecological simulations implied that a commercial mesopelagic fishery might not have large biomass impacts for many species in the California Current system, there is still a need to further explore the various roles of the mesopelagic zone in the ocean.

Traits affecting nutrient recycling by mobile consumers can explain coexistence and spatially heterogeneous trophic regulation across a meta-ecosystem

Ecosystems are linked through spatial flows of organisms and nutrients that impact their biodiversity and regulation. Theory has predominantly studied passive nutrient flows that occur independently of organism movement. Mobile organisms, however, commonly drive nutrient flows across ecosystems through nutrient recycling. Using a meta-ecosystem model where consumers move between ecosystems, we study how consumer recycling and traits related to feeding and sheltering preferences affect species diversity and trophic regulation. We show local effects of recycling can cascade across space, yielding spatially heterogeneous top-down and bottom-up effects. Consumer traits impact the direction and magnitude of these effects by enabling recycling to favour a single ecosystem. Recycling further modifies outcomes of competition between consumer species by creating a positive feedback on the production of one competitor. Our findings suggest spatial interactions between feeding and recycling activities of organisms are key to predicting biodiversity and ecosystem functioning across spatial scales.

Climate cascades affect coastal Antarctic seafloor ecosystem functioning

Polar seafloor ecosystems are changing rapidly and dramatically, challenging previously held paradigms of extreme dynamical stability. Warming-related declines in polar sea ice are expected to alter fluxes of phytoplankton and under-ice algae to the seafloor. Yet, how changes in food flux cascade through to seafloor communities and functions remains unclear. We leveraged natural spatial and temporal gradients in summertime sea ice extent to better understand the trajectories and implications of climate-related change in McMurdo Sound, Antarctica. McMurdo Sound was expected to be one of the last coastal marine environments on Earth to be affected by planetary warming, but the situation may be changing. Comparing satellite observations of selected coastal sites in McMurdo Sound between 2010-2017 and 2002-2009 revealed more ice-free days per year, and shorter distances to open water during the warmest months each year, in the more recent period. Interdecadal Pacific Oscillation (IPO), Oceanic Niño Index (ONI) and Antarctic Oscillation (AAO) climate indices peaked concurrently between 2014 and 2017 when sea ice breakouts in McMurdo Sound were most spatially and temporally extensive. Increases in sediment chlorophyll a and phaeophytin content (indicating increased deposition of detrital algal food material) were recorded during 2014-2017 at three coastal study sites in McMurdo Sound following the major sea ice breakouts. Soft-sediment seafloor ecosystem metabolism (measured in benthic incubation chambers as dissolved oxygen and inorganic nutrient fluxes) was correlated with sediment algal pigment concentration. Epifaunal invertebrate density, particularly opportunistic sessile suspension feeders, and infaunal community composition also shifted with increased food supply. The ecological characteristics and functions measured at the food-poor sites shifted towards those observed at richer sites at a surprisingly fast pace. These results indicate the sensitivity of the benthos and shed light on Antarctic marine trophic cascades and trajectories of response of iconic high-latitude seafloor habitats to a warming climate.

Food web interactions in a human dominated Mediterranean coastal ecosystem

Mediterranean coastal ecosystems provide various valuable ecosystem goods and services; however, they are vulnerable to ecological degradation due to a dramatic increase in resource use and environmental stress. Disentangling the effects of multiple human interventions on coastal ecosystems requires whole description of food web interactions using quantitative tools. A mass balance Ecopath model has been developed here for Saronikos Gulf, a naturally oligotrophic Mediterranean coastal ecosystem with a long history of human interventions. Our main focus was to describe the structure and functioning of the ecosystem, investigate the trophic interplay among the various compartments of the food web under the impact of mixed multi-gear fisheries, and to quantify resilience related emergent ecosystem properties. To this end, we reviewed a large amount of local and regional biological information which was integrated in 40 functional groups covering all trophic levels, while fishing activities were described with 7 fleets. The model shared characteristics of both productive (e.g., high amount of flows) and oligotrophic systems (e.g., low biomass accumulation) and presented typical features of Mediterranean ecosystem functioning, such as the importance of detritus as an energy source, strong benthic-pelagic coupling and the dominance of the pelagic compartment in terms of total production and consumption. Trophic forcing in the ecosystem of Saronikos Gulf was complex with both top-down and bottom-up drivers being important. Zooplankton was the central nexus between basal resources and higher trophic levels, while top predators such as hake, squids and anglerfish were identified as keystone species presenting a significant overall effect on the food web via direct and indirect trophic interactions. Ecological indicators depicted a moderately complex food-web of a large and immature ecosystem with its strengths in reserve being affected by environmental degradation. Additionally, exploitation indices classified fishing activities in Saronikos Gulf as unsustainable, affecting several target groups, including high trophic level species. However, the morphological and bathymetric complexity of Saronikos Gulf seems to function as a natural ecological reserve for the ecosystem by providing nursery grounds to various species (e.g., hake, small pelagic fishes) and supporting important fish stocks for local fisheries.

Patterns of Benthic Communities in Arctic Fjords (Novaya Zemlya Archipelago, Kara Sea): Resilience vs. Fragility

Despite a large number of studies, a detailed overall picture of benthic communities zonation in the Arctic fjords is currently lacking. Our study aimed to find out whether there is a universal model for the distribution of benthic communities based on the structural features of the fjords. We examined benthic macrofaunal communities in fjords with various environmental settings on the eastern coast of Novaya Zemlya Archipelago, Kara Sea. The material was collected during five cruises undertaken from 2013 to 2016. A total of 50 stations located in the five fjords were taken. In all five fjords, macrofauna had a similar composition assembled from a regional species pool, with a predominance of species tolerant to glacial sedimentation and fluctuations in temperature and salinity. Benthic communities changed consistently along the axis of the bay from the outer slope to the inner parts. Biodiversity and quantitative characteristics of the macrofauna decreased along the environmental gradient related to terrigenous and glacial runoff, consistent with patterns reported in other studies of Arctic glacial fjords. The most impoverished communities were dominated by bivalve Portlandia arctica and isopod Saduria sabini. At the same time, fjord walls and sills, characterized by low sedimentation rates, strong currents and the presence of ice-rafted debris, were inhabited by patchy distributed benthic communities dominated by species confined to hard substrates. In general, the distribution of communities corresponded to five zones: depleted inner periglacial areas, the upper subtidal belt with stony substrates, deep inner semi-isolated basin, outer non-isolated basins and upper slope transitioning to lower slope. Our study can provide a reference point for monitoring changes in fjord ecosystems in response to climate change and the potential impact of human activities.

High Transcriptional Activity and Diverse Functional Repertoires of Hundreds of Giant Viruses in a Coastal Marine System

Viruses belonging to the Nucleocytoviricota phylum are globally distributed and include members with notably large genomes and complex functional repertoires. Recent studies have shown that these viruses are particularly diverse and abundant in marine systems, but the magnitude of actively replicating Nucleocytoviricota present in ocean habitats remains unclear. In this study, we compiled a curated database of 2,431 Nucleocytoviricota genomes and used it to examine the gene expression of these viruses in a 2.5-day metatranscriptomic time-series from surface waters of the California Current. We identified 145 viral genomes with high levels of gene expression, including 90 Imitervirales and 49 Algavirales viruses. In addition to recovering high expression of core genes involved in information processing that are commonly expressed during viral infection, we also identified transcripts of diverse viral metabolic genes from pathways such as glycolysis, the TCA cycle, and the pentose phosphate pathway, suggesting that virus-mediated reprogramming of central carbon metabolism is common in oceanic surface waters. Surprisingly, we also identified viral transcripts with homology to actin, myosin, and kinesin domains, suggesting that viruses may use these gene products to manipulate host cytoskeletal dynamics during infection. We performed phylogenetic analysis on the virus-encoded myosin and kinesin proteins, which demonstrated that most belong to deep-branching viral clades, but that others appear to have been acquired from eukaryotes more recently. Our results highlight a remarkable diversity of active Nucleocytoviricota in a coastal marine system and underscore the complex functional repertoires expressed by these viruses during infection. IMPORTANCE The discovery of giant viruses has transformed our understanding of viral complexity. Although viruses have traditionally been viewed as filterable infectious agents that lack metabolism, giant viruses can reach sizes rivalling cellular lineages and possess genomes encoding central metabolic processes. Recent studies have shown that giant viruses are widespread in aquatic systems, but the activity of these viruses and the extent to which they reprogram host physiology in situ remains unclear. Here, we show that numerous giant viruses consistently express central metabolic enzymes in a coastal marine system, including components of glycolysis, the TCA cycle, and other pathways involved in nutrient homeostasis. Moreover, we found expression of several viral-encoded actin, myosin, and kinesin genes, indicating viral manipulation of the host cytoskeleton during infection. Our study reveals a high activity of giant viruses in a coastal marine system and indicates they are a diverse and underappreciated component of microbial diversity in the ocean.

Plasticity of trophic interactions in fish assemblages results in temporal stability of benthic-pelagic couplings

This study addresses the temporal variability of couplings between pelagic and benthic habitats for fish assemblages at five periods in a shallow epicontinental sea, the Eastern English Channel (EEC). Organic matter fluxes fueling fish assemblages and the relative contribution of their different sources were assessed using stable isotope analysis and associated isotopic functional metrics. Couplings between benthic and pelagic realms appeared to be a permanent feature in the EEC, potentially favored by shallow depth and driven by the combination of two trophic processes. First, trophic interactions exhibited plasticity and revealed resource partitioning. Second, changes in the composition of fish assemblages did not impact benthic-pelagic couplings, as most dominant species were generalists during at least one time period, allowing complete use of available resources. Examining both unweighted and biomass-weighted indices was complementary and permitted a better understanding of trophic interactions and energy fluxes.

Multiple configurations and fluctuating trophic control in the Barents Sea food-web

The Barents Sea is a subarctic shelf sea which has experienced major changes during the past decades. From ecological time-series, three different food-web configurations, reflecting successive shifts of dominance of pelagic fish, demersal fish, and zooplankton, as well as varying trophic control have been identified in the last decades. This covers a relatively short time-period as available ecological time-series are often relatively short. As we lack information for prior time-periods, we use a chance and necessity model to investigate if there are other possible configurations of the Barents Sea food-web than those observed in the ecological time-series, and if this food-web is characterized by a persistent trophic control. We perform food-web simulations using the Non-Deterministic Network Dynamic model (NDND) for the Barents Sea, identify food-web configurations and compare those to historical reconstructions of food-web dynamics. Biomass configurations fall into four major types and three trophic pathways. Reconstructed data match one of the major biomass configurations but is characterized by a different trophic pathway than most of the simulated configurations. The simulated biomass displays fluctuations between bottom-up and top-down trophic control over time rather than persistent trophic control. Our results show that the configurations we have reconstructed are strongly overlapping with our simulated configurations, though they represent only a subset of the possible configurations of the Barents Sea food-web.

Seasonal dynamics of biochemical composition and fatty acids of swordfish (Xiphias gladius) in the Southeast Pacific Ocean off the coast of Chile

In the Southeast Pacific Ocean, Xiphias gladius migrates through the Chilean coastal zone for feeding. Here, it forages for different prey items from autumn to spring, acquiring a great variety of energy and nutritional reserves. We evaluated seasonal variations in the biochemical reserves (i.e., contents of lipids, proteins, and glucose), total energy content and fatty acid profile of specimens captured during the austral autumn, winter, and spring. Our results show that higher amounts of lipids were found in the winter and spring, while protein and glucose were higher in the autumn. Thus, the energy content showed significant differences, with higher levels in winter and spring. Furthermore, the fatty acid profile was more diverse in the spring than the autumn and winter and was characterized by higher amounts of polyunsaturated fatty acids. These findings suggest that temporal changes in the biochemical reserves, total energy content and fatty acid profile support the idea of a "trophic migration" (i.e., the feeding period) established by the dynamics of fishery fleets. The high amounts of lipids and diverse fatty acid profile found in the spring could indicate the end of the trophic migration during this season. Thus, X. gladius may reach an optimum nutritional condition in the spring and make energetic adjustments to carry out its reproductive migration during the austral summer. Therefore, this species seems to meet the high energy demands of the reproductive season by foraging for a wide range of prey items from autumn to spring and storing an increased amount of lipids at the end of the feeding period. Overall, our data provides crucial baseline knowledge for future research on the ecophysiology of X. gladius, as well as for the management and conservation of this fishery resource under an ecosystem approach.

Sustainable co-location solutions for offshore wind farms and fisheries need to account for socio-ecological trade-offs

The spatial expansion of offshore wind farms (OWFs) is key for the transition to a carbon free energy sector. In the North Sea, the sprawl of OWFs is regulated by marine spatial planning (MSP) and results in an increasing loss of space for other sectors such as fisheries. Understanding fisheries benefits of OWFs and mitigating the loss of fishing grounds is key for co-location solutions in MSP. For the German exclusive economic zone (EEZ) of the North Sea we conducted a novel socio-ecological assessment of fisheries benefits which combines exploring potential spill-over from an OWF with an experimental brown crab (Cancer pagurus) pot fishery and an economic viability analysis of such a fishery. We arrayed a total of 205 baited pots along transects from an OWF located near the island of Helgoland. After a soaking time of 24 h we retrieved the pots and measured the carapace width (mm), weight (g), and sex of each individual crab. To conclude on cumulative spill-over potentials from all OWFs in the German EEZ and drivers of passive gear fisheries we analysed vessel monitoring system (VMS)-data and computed random forest regressions. Local spill-over mechanisms occurred up to distances of 300 to 500 m to the nearest turbines and revealed an increasing attraction of pot fishing activities to particular OWFs. This corresponds to the observation of constantly increasing fishing effort targeting brown crab likely due to both a growing international demand and stable resource populations at suitable habitats, including OWFs. Our break-even scenarios showed that beam trawlers have the capacities to conduct during summer an opportunistic but economically viable pot fishery. We argue that particularly in the North Sea, where space becomes limited, integrated assessments of the wider environmental and socio-economic effects of planning are crucial for a sustainable co-location of OWFs and fisheries.