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For: Fredrick K, Caramori T, Chen YF, Galizzi A, Helmann JD. Promoter architecture in the flagellar regulon of Bacillus subtilis: high-level expression of flagellin by the sigma D RNA polymerase requires an upstream promoter element. Proc Natl Acad Sci U S A 1995;92:2582-6. [PMID: 7708689 PMCID: PMC42262 DOI: 10.1073/pnas.92.7.2582] [Citation(s) in RCA: 63] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]  Open
Number Cited by Other Article(s)
1
Mishra A, Hughes AC, Amon JD, Rudner DZ, Wang X, Kearns DB. SwrA-mediated Multimerization of DegU and an Upstream Activation Sequence Enhance Flagellar Gene Expression in Bacillus subtilis. J Mol Biol 2024;436:168419. [PMID: 38141873 PMCID: PMC11462632 DOI: 10.1016/j.jmb.2023.168419] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 12/11/2023] [Accepted: 12/19/2023] [Indexed: 12/25/2023]
2
Zhou B, Xiong Y, Nevo Y, Kahan T, Yakovian O, Alon S, Bhattacharya S, Rosenshine I, Sinai L, Ben-Yehuda S. Dormant bacterial spores encrypt a long-lasting transcriptional program to be executed during revival. Mol Cell 2023;83:4158-4173.e7. [PMID: 37949068 DOI: 10.1016/j.molcel.2023.10.010] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Revised: 08/16/2023] [Accepted: 10/12/2023] [Indexed: 11/12/2023]
3
Mishra A, Hughes AC, Amon JD, Rudner DZ, Wang X, Kearns DB. SwrA extends DegU over an UP element to activate flagellar gene expression in Bacillus subtilis. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.08.04.552067. [PMID: 37577504 PMCID: PMC10418190 DOI: 10.1101/2023.08.04.552067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/15/2023]
4
Distinct Interaction Mechanism of RNAP and ResD and Distal Subsites for Transcription Activation of Nitrite Reductase in Bacillus subtilisψ. J Bacteriol 2021;204:e0043221. [PMID: 34898263 DOI: 10.1128/jb.00432-21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
5
Exploring the Amino Acid Residue Requirements of the RNA Polymerase (RNAP) α Subunit C-Terminal Domain for Productive Interaction between Spx and RNAP of Bacillus subtilis. J Bacteriol 2017;199:JB.00124-17. [PMID: 28484046 DOI: 10.1128/jb.00124-17] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2017] [Accepted: 05/01/2017] [Indexed: 01/21/2023]  Open
6
Evidence that Oxidative Stress Induces spxA2 Transcription in Bacillus anthracis Sterne through a Mechanism Requiring SpxA1 and Positive Autoregulation. J Bacteriol 2016;198:2902-2913. [PMID: 27501985 PMCID: PMC5055595 DOI: 10.1128/jb.00512-16] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2016] [Accepted: 08/02/2016] [Indexed: 12/22/2022]  Open
7
Murayama S, Ishikawa S, Chumsakul O, Ogasawara N, Oshima T. The Role of α-CTD in the Genome-Wide Transcriptional Regulation of the Bacillus subtilis Cells. PLoS One 2015;10:e0131588. [PMID: 26154296 PMCID: PMC4495994 DOI: 10.1371/journal.pone.0131588] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2015] [Accepted: 06/02/2015] [Indexed: 11/22/2022]  Open
8
The second messenger cyclic Di-GMP regulates Clostridium difficile toxin production by controlling expression of sigD. J Bacteriol 2013;195:5174-85. [PMID: 24039264 DOI: 10.1128/jb.00501-13] [Citation(s) in RCA: 100] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]  Open
9
DNA-binding properties of the Bacillus subtilis and Aeribacillus pallidus AC6 σ(D) proteins. J Bacteriol 2010;193:575-9. [PMID: 21097624 DOI: 10.1128/jb.01193-10] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
10
Osterberg S, Skärfstad E, Shingler V. The sigma-factor FliA, ppGpp and DksA coordinate transcriptional control of the aer2 gene of Pseudomonas putida. Environ Microbiol 2010;12:1439-51. [PMID: 20089044 DOI: 10.1111/j.1462-2920.2009.02139.x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
11
Activation of the promoter of the fengycin synthetase operon by the UP element. J Bacteriol 2009;191:4615-23. [PMID: 19447911 DOI: 10.1128/jb.00255-09] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
12
Helmann JD. RNA polymerase: a nexus of gene regulation. Methods 2009;47:1-5. [PMID: 19070783 PMCID: PMC3022018 DOI: 10.1016/j.ymeth.2008.12.001] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2008] [Accepted: 12/01/2008] [Indexed: 12/13/2022]  Open
13
Autoregulation of swrAA and motility in Bacillus subtilis. J Bacteriol 2008;190:5720-8. [PMID: 18567663 DOI: 10.1128/jb.00455-08] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
14
Dekhtyar M, Morin A, Sakanyan V. Triad pattern algorithm for predicting strong promoter candidates in bacterial genomes. BMC Bioinformatics 2008;9:233. [PMID: 18471287 PMCID: PMC2412878 DOI: 10.1186/1471-2105-9-233] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2007] [Accepted: 05/09/2008] [Indexed: 11/17/2022]  Open
15
Sinoquet C, Demey S, Braun F. Large-scale computational and statistical analyses of high transcription potentialities in 32 prokaryotic genomes. Nucleic Acids Res 2008;36:3332-40. [PMID: 18440978 PMCID: PMC2425493 DOI: 10.1093/nar/gkn135] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
16
Yakhnin H, Pandit P, Petty TJ, Baker CS, Romeo T, Babitzke P. CsrA of Bacillus subtilis regulates translation initiation of the gene encoding the flagellin protein (hag) by blocking ribosome binding. Mol Microbiol 2007;64:1605-20. [PMID: 17555441 DOI: 10.1111/j.1365-2958.2007.05765.x] [Citation(s) in RCA: 86] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
17
Muramatsu M, Hihara Y. Coordinated high-light response of genes encoding subunits of photosystem I is achieved by AT-rich upstream sequences in the cyanobacterium Synechocystis sp. strain PCC 6803. J Bacteriol 2007;189:2750-8. [PMID: 17277074 PMCID: PMC1855792 DOI: 10.1128/jb.01903-06] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2006] [Accepted: 01/23/2007] [Indexed: 11/20/2022]  Open
18
Paul CJ, Twine SM, Tam KJ, Mullen JA, Kelly JF, Austin JW, Logan SM. Flagellin diversity in Clostridium botulinum groups I and II: a new strategy for strain identification. Appl Environ Microbiol 2007;73:2963-75. [PMID: 17351097 PMCID: PMC1892883 DOI: 10.1128/aem.02623-06] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
19
Shen L, Feng X, Yuan Y, Luo X, Hatch TP, Hughes KT, Liu JS, Zhang YX. Selective promoter recognition by chlamydial sigma28 holoenzyme. J Bacteriol 2006;188:7364-77. [PMID: 16936033 PMCID: PMC1636291 DOI: 10.1128/jb.01014-06] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
20
Newberry KJ, Nakano S, Zuber P, Brennan RG. Crystal structure of the Bacillus subtilis anti-alpha, global transcriptional regulator, Spx, in complex with the alpha C-terminal domain of RNA polymerase. Proc Natl Acad Sci U S A 2005;102:15839-44. [PMID: 16249335 PMCID: PMC1266077 DOI: 10.1073/pnas.0506592102] [Citation(s) in RCA: 79] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2005] [Accepted: 09/13/2005] [Indexed: 11/18/2022]  Open
21
Ross W, Gourse RL. Sequence-independent upstream DNA-alphaCTD interactions strongly stimulate Escherichia coli RNA polymerase-lacUV5 promoter association. Proc Natl Acad Sci U S A 2004;102:291-6. [PMID: 15626760 PMCID: PMC544289 DOI: 10.1073/pnas.0405814102] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
22
Kearns DB, Chu F, Branda SS, Kolter R, Losick R. A master regulator for biofilm formation by Bacillus subtilis. Mol Microbiol 2004;55:739-49. [PMID: 15661000 DOI: 10.1111/j.1365-2958.2004.04440.x] [Citation(s) in RCA: 442] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
23
Krásný L, Gourse RL. An alternative strategy for bacterial ribosome synthesis: Bacillus subtilis rRNA transcription regulation. EMBO J 2004;23:4473-83. [PMID: 15496987 PMCID: PMC526457 DOI: 10.1038/sj.emboj.7600423] [Citation(s) in RCA: 232] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2004] [Accepted: 08/25/2004] [Indexed: 11/08/2022]  Open
24
Amati G, Bisicchia P, Galizzi A. DegU-P represses expression of the motility fla-che operon in Bacillus subtilis. J Bacteriol 2004;186:6003-14. [PMID: 15342569 PMCID: PMC515139 DOI: 10.1128/jb.186.18.6003-6014.2004] [Citation(s) in RCA: 70] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
25
Susanna KA, van der Werff AF, den Hengst CD, Calles B, Salas M, Venema G, Hamoen LW, Kuipers OP. Mechanism of transcription activation at the comG promoter by the competence transcription factor ComK of Bacillus subtilis. J Bacteriol 2004;186:1120-8. [PMID: 14762007 PMCID: PMC344208 DOI: 10.1128/jb.186.4.1120-1128.2004] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
26
Meijer WJJ, Salas M. Relevance of UP elements for three strong Bacillus subtilis phage phi29 promoters. Nucleic Acids Res 2004;32:1166-76. [PMID: 14973248 PMCID: PMC373416 DOI: 10.1093/nar/gkh290] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
27
Senesi S, Ghelardi E, Celandroni F, Salvetti S, Parisio E, Galizzi A. Surface-associated flagellum formation and swarming differentiation in Bacillus subtilis are controlled by the ifm locus. J Bacteriol 2004;186:1158-64. [PMID: 14762011 PMCID: PMC344213 DOI: 10.1128/jb.186.4.1158-1164.2004] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2003] [Accepted: 10/21/2003] [Indexed: 11/20/2022]  Open
28
Macchi R, Montesissa L, Murakami K, Ishihama A, De Lorenzo V, Bertoni G. Recruitment of sigma54-RNA polymerase to the Pu promoter of Pseudomonas putida through integration host factor-mediated positioning switch of alpha subunit carboxyl-terminal domain on an UP-like element. J Biol Chem 2003;278:27695-702. [PMID: 12754257 DOI: 10.1074/jbc.m303031200] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
29
Helmann JD. Purification of Bacillus subtilis RNA polymerase and associated factors. Methods Enzymol 2003;370:10-24. [PMID: 14712630 DOI: 10.1016/s0076-6879(03)70002-0] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
30
Katayama S, Matsushita O, Tamai E, Miyata S, Okabe A. Phased A-tracts bind to the alpha subunit of RNA polymerase with increased affinity at low temperature. FEBS Lett 2001;509:235-8. [PMID: 11741595 DOI: 10.1016/s0014-5793(01)03148-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
31
Meng W, Belyaeva T, Savery NJ, Busby SJ, Ross WE, Gaal T, Gourse RL, Thomas MS. UP element-dependent transcription at the Escherichia coli rrnB P1 promoter: positional requirements and role of the RNA polymerase alpha subunit linker. Nucleic Acids Res 2001;29:4166-78. [PMID: 11600705 PMCID: PMC60210 DOI: 10.1093/nar/29.20.4166] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
32
Scholz HC, Riedmann E, Witte A, Lubitz W, Kuen B. S-layer variation in Bacillus stearothermophilus PV72 is based on DNA rearrangements between the chromosome and the naturally occurring megaplasmids. J Bacteriol 2001;183:1672-9. [PMID: 11160098 PMCID: PMC95052 DOI: 10.1128/jb.183.5.1672-1679.2001] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
33
Ross W, Ernst A, Gourse RL. Fine structure of E. coli RNA polymerase-promoter interactions: alpha subunit binding to the UP element minor groove. Genes Dev 2001;15:491-506. [PMID: 11238372 PMCID: PMC312649 DOI: 10.1101/gad.870001] [Citation(s) in RCA: 89] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
34
Yasuno K, Yamazaki T, Tanaka Y, Kodama TS, Matsugami A, Katahira M, Ishihama A, Kyogoku Y. Interaction of the C-terminal domain of the E. coli RNA polymerase alpha subunit with the UP element: recognizing the backbone structure in the minor groove surface. J Mol Biol 2001;306:213-25. [PMID: 11237595 DOI: 10.1006/jmbi.2000.4369] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
35
Kunnimalaiyaan M, Stevenson DM, Zhou Y, Vary PS. Analysis of the replicon region and identification of an rRNA operon on pBM400 of Bacillus megaterium QM B1551. Mol Microbiol 2001;39:1010-21. [PMID: 11251820 DOI: 10.1046/j.1365-2958.2001.02292.x] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
36
Gourse RL, Ross W, Gaal T. UPs and downs in bacterial transcription initiation: the role of the alpha subunit of RNA polymerase in promoter recognition. Mol Microbiol 2000;37:687-95. [PMID: 10972792 DOI: 10.1046/j.1365-2958.2000.01972.x] [Citation(s) in RCA: 205] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
37
Estrem ST, Ross W, Gaal T, Chen ZW, Niu W, Ebright RH, Gourse RL. Bacterial promoter architecture: subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase alpha subunit. Genes Dev 1999;13:2134-47. [PMID: 10465790 PMCID: PMC316962 DOI: 10.1101/gad.13.16.2134] [Citation(s) in RCA: 160] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
38
Gourse RL, Gaal T, Aiyar SE, Barker MM, Estrem ST, Hirvonen CA, Ross W. Strength and regulation without transcription factors: lessons from bacterial rRNA promoters. COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 1999;63:131-9. [PMID: 10384277 DOI: 10.1101/sqb.1998.63.131] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
39
Katayama S, Matsushita O, Jung CM, Minami J, Okabe A. Promoter upstream bent DNA activates the transcription of the Clostridium perfringens phospholipase C gene in a low temperature-dependent manner. EMBO J 1999;18:3442-50. [PMID: 10369683 PMCID: PMC1171423 DOI: 10.1093/emboj/18.12.3442] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]  Open
40
Ide N, Ikebe T, Kutsukake K. Reevaluation of the promoter structure of the class 3 flagellar operons of Escherichia coli and Salmonella. Genes Genet Syst 1999;74:113-6. [PMID: 10586520 DOI: 10.1266/ggs.74.113] [Citation(s) in RCA: 49] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
41
Yang DH, von Kalckreuth J, Allmansberger R. Synthesis of the sigmaD protein is not sufficient to trigger expression of motility functions in Bacillus subtilis. J Bacteriol 1999;181:2942-6. [PMID: 10217790 PMCID: PMC93741 DOI: 10.1128/jb.181.9.2942-2946.1999] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/1998] [Accepted: 02/17/1999] [Indexed: 11/20/2022]  Open
42
Aiyar SE, Gourse RL, Ross W. Upstream A-tracts increase bacterial promoter activity through interactions with the RNA polymerase alpha subunit. Proc Natl Acad Sci U S A 1998;95:14652-7. [PMID: 9843944 PMCID: PMC24504 DOI: 10.1073/pnas.95.25.14652] [Citation(s) in RCA: 79] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
43
Ross W, Aiyar SE, Salomon J, Gourse RL. Escherichia coli promoters with UP elements of different strengths: modular structure of bacterial promoters. J Bacteriol 1998;180:5375-83. [PMID: 9765569 PMCID: PMC107586 DOI: 10.1128/jb.180.20.5375-5383.1998] [Citation(s) in RCA: 130] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/1998] [Accepted: 08/17/1998] [Indexed: 11/20/2022]  Open
44
Rowe-Magnus DA, Mencía M, Rojo F, Salas M, Spiegelman GB. Transcriptional activation of the Bacillus subtilis spoIIG promoter by the response regulator Spo0A is independent of the C-terminal domain of the RNA polymerase alpha subunit. J Bacteriol 1998;180:4760-3. [PMID: 9721325 PMCID: PMC107497 DOI: 10.1128/jb.180.17.4760-4763.1998] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
45
Estrem ST, Gaal T, Ross W, Gourse RL. Identification of an UP element consensus sequence for bacterial promoters. Proc Natl Acad Sci U S A 1998;95:9761-6. [PMID: 9707549 PMCID: PMC21410 DOI: 10.1073/pnas.95.17.9761] [Citation(s) in RCA: 236] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/1998] [Indexed: 11/18/2022]  Open
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Rojo F, Mencía M, Monsalve M, Salas M. Transcription activation and repression by interaction of a regulator with the alpha subunit of RNA polymerase: the model of phage phi 29 protein p4. PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY 1998;60:29-46. [PMID: 9594570 DOI: 10.1016/s0079-6603(08)60888-0] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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Mencía M, Monsalve M, Rojo F, Salas M. Substitution of the C-terminal domain of the Escherichia coli RNA polymerase alpha subunit by that from Bacillus subtilis makes the enzyme responsive to a Bacillus subtilis transcriptional activator. J Mol Biol 1998;275:177-85. [PMID: 9466901 DOI: 10.1006/jmbi.1997.1463] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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