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Li Y, Zhao L, Guo C, Tang M, Lian W, Chen S, Pan Y, Xu X, Luo C, Yi Y, Cui Y, Chen L. OsNAC103, an NAC transcription factor negatively regulates plant height in rice. PLANTA 2024; 259:35. [PMID: 38193994 PMCID: PMC10776745 DOI: 10.1007/s00425-023-04309-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Accepted: 12/05/2023] [Indexed: 01/10/2024]
Abstract
MAIN CONCLUSION OsNAC103 negatively regulates rice plant height by influencing the cell cycle and crosstalk of phytohormones. Plant height is an important characteristic of rice farming and is directly related to agricultural yield. Although there has been great progress in research on plant growth regulation, numerous genes remain to be elucidated. NAC transcription factors are widespread in plants and have a vital function in plant growth. Here, we observed that the overexpression of OsNAC103 resulted in a dwarf phenotype, whereas RNA interference (RNAi) plants and osnac103 mutants showed no significant difference. Further investigation revealed that the cell length did not change, indicating that the dwarfing of plants was caused by a decrease in cell number due to cell cycle arrest. The content of the bioactive cytokinin N6-Δ2-isopentenyladenine (iP) decreased as a result of the cytokinin synthesis gene being downregulated and the enhanced degradation of cytokinin oxidase. OsNAC103 overexpression also inhibited cell cycle progression and regulated the activity of the cell cyclin OsCYCP2;1 to arrest the cell cycle. We propose that OsNAC103 may further influence rice development and gibberellin-cytokinin crosstalk by regulating the Oryza sativa homeobox 71 (OSH71). Collectively, these results offer novel perspectives on the role of OsNAC103 in controlling plant architecture.
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Affiliation(s)
- Yan Li
- Xiamen Key Laboratory for Plant Genetics, School of Life Sciences, Xiamen University, Xiamen, 361102, China
| | - Liming Zhao
- Xiamen Key Laboratory for Plant Genetics, School of Life Sciences, Xiamen University, Xiamen, 361102, China
| | - Chiming Guo
- Fujian Key Laboratory of Subtropical Plant Physiology and Biochemistry, Fujian Institute of Subtropical Botany, Xiamen, 361006, China
| | - Ming Tang
- Key Laboratory of National Forestry and Grassland Administration On Biodiversity Conservation in Karst Mountainous Areas of Southwestern, School of Life Science, Guizhou Normal University, Guiyang, 550025, China
| | - Wenli Lian
- Xiamen Key Laboratory for Plant Genetics, School of Life Sciences, Xiamen University, Xiamen, 361102, China
| | - Siyu Chen
- Xiamen Key Laboratory for Plant Genetics, School of Life Sciences, Xiamen University, Xiamen, 361102, China
| | - Yuehan Pan
- Xiamen Key Laboratory for Plant Genetics, School of Life Sciences, Xiamen University, Xiamen, 361102, China
| | - Xiaorong Xu
- Key Laboratory of National Forestry and Grassland Administration On Biodiversity Conservation in Karst Mountainous Areas of Southwestern, School of Life Science, Guizhou Normal University, Guiyang, 550025, China
| | - Chengke Luo
- Agricultural College, Ningxia University, Yinchuan, 750021, China
| | - Yin Yi
- Key Laboratory of National Forestry and Grassland Administration On Biodiversity Conservation in Karst Mountainous Areas of Southwestern, School of Life Science, Guizhou Normal University, Guiyang, 550025, China
| | - Yuchao Cui
- Xiamen Key Laboratory for Plant Genetics, School of Life Sciences, Xiamen University, Xiamen, 361102, China.
| | - Liang Chen
- Xiamen Key Laboratory for Plant Genetics, School of Life Sciences, Xiamen University, Xiamen, 361102, China.
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Masuda K, Yamada T, Kagawa Y, Fukuda H. Application of time lags between light and temperature cycles for growth control based on the circadian clock of Lactuca sativa L. seedlings. FRONTIERS IN PLANT SCIENCE 2022; 13:994555. [PMID: 36589103 PMCID: PMC9802636 DOI: 10.3389/fpls.2022.994555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Accepted: 09/26/2022] [Indexed: 06/17/2023]
Abstract
The circadian clock plays an important role in agriculture, especially in highly controlled environments, such as plant factories. However, multiple environmental factors have an extremely high degree of freedom, and it is difficult to experimentally search for the optimal design conditions. A recent study demonstrated that the effect of time lags between light and temperature cycles on plant growth could be predicted by the entrainment properties of the circadian clock in Arabidopsis thaliana. Based on this prediction, it was possible to control plant growth by adjusting the time lag. However, for application in plant factories, it is necessary to verify the effectiveness of this method using commercial vegetables, such as leaf lettuce. In this study, we investigated the entrainment properties of the circadian clock and the effect of the time lag between light and temperature cycles on circadian rhythms and plant growth in Lactuca sativa L. seedlings. For evaluation of circadian rhythms, we used transgenic L. sativa L. with a luciferase reporter in the experiment and a phase oscillator model in the simulation. We found that the entrainment properties for the light and temperature stimuli and the effects of time lags on circadian rhythm and growth were similar to those of A. thaliana. Moreover, we demonstrated that changes in growth under different time lags could be predicted by simulation based on the entrainment properties of the circadian clock. These results showed the importance of designing a cultivation environment that considers the circadian clock and demonstrated a series of methods to achieve this.
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Affiliation(s)
- Kosaku Masuda
- Department of Mechanical Engineering, Graduate School of Engineering, Osaka Prefecture University, Sakai, Japan
| | - Tatsuya Yamada
- Department of Mechanical Engineering, Graduate School of Engineering, Osaka Prefecture University, Sakai, Japan
| | - Yuya Kagawa
- Department of Mechanical Engineering, Graduate School of Engineering, Osaka Prefecture University, Sakai, Japan
| | - Hirokazu Fukuda
- Department of Mechanical Engineering, Graduate School of Engineering, Osaka Prefecture University, Sakai, Japan
- Department of Mechanical Engineering, Graduate School of Engineering, Osaka Metropolitan University, Sakai, Japan
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3
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Kyung J, Jeon M, Jeong G, Shin Y, Seo E, Yu J, Kim H, Park CM, Hwang D, Lee I. The two clock proteins CCA1 and LHY activate VIN3 transcription during vernalization through the vernalization-responsive cis-element. THE PLANT CELL 2022; 34:1020-1037. [PMID: 34931682 PMCID: PMC8894950 DOI: 10.1093/plcell/koab304] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Accepted: 11/22/2021] [Indexed: 05/20/2023]
Abstract
Vernalization, a long-term cold-mediated acquisition of flowering competence, is critically regulated by VERNALIZATION INSENSITIVE 3 (VIN3), a gene induced by vernalization in Arabidopsis. Although the function of VIN3 has been extensively studied, how VIN3 expression itself is upregulated by long-term cold is not well understood. In this study, we identified a vernalization-responsive cis-element in the VIN3 promoter, VREVIN3, composed of a G-box and an evening element (EE). Mutations in either the G-box or the EE prevented VIN3 expression from being fully induced upon vernalization, leading to defects in the vernalization response. We determined that the core clock proteins CIRCADIAN CLOCK-ASSOCIATED 1 (CCA1) and LATE-ELONGATED HYPOCOTYL (LHY) associate with the EE of VREVIN3, both in vitro and in vivo. In a cca1 lhy double mutant background harboring a functional FRIGIDA allele, long-term cold-mediated VIN3 induction and acceleration of flowering were impaired, especially under mild cold conditions such as at 12°C. During prolonged cold exposure, oscillations of CCA1/LHY transcripts were altered, while CCA1 abundance increased at dusk, coinciding with the diurnal peak of VIN3 transcripts. We propose that modulation of the clock proteins CCA1 and LHY participates in the systems involved in sensing long-term cold for the activation of VIN3 transcription.
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Affiliation(s)
- Jinseul Kyung
- School of Biological Sciences, Seoul National University, Seoul 08826, Korea
| | - Myeongjune Jeon
- School of Biological Sciences, Seoul National University, Seoul 08826, Korea
| | - Goowon Jeong
- School of Biological Sciences, Seoul National University, Seoul 08826, Korea
| | - Yourae Shin
- School of Biological Sciences, Seoul National University, Seoul 08826, Korea
| | - Eunjoo Seo
- School of Biological Sciences, Seoul National University, Seoul 08826, Korea
| | - Jihyeon Yu
- School of Biological Sciences, Seoul National University, Seoul 08826, Korea
| | - Hoyeun Kim
- School of Biological Sciences, Seoul National University, Seoul 08826, Korea
| | - Chung-Mo Park
- Department of Chemistry, Seoul National University, Seoul 08826, Korea
| | - Daehee Hwang
- School of Biological Sciences, Seoul National University, Seoul 08826, Korea
| | - Ilha Lee
- School of Biological Sciences, Seoul National University, Seoul 08826, Korea
- Research Center for Plant Plasticity, Seoul National University, Seoul 08826, Korea
- Author for correspondence:
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4
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Wang J, Tang F, Gao C, Gao X, Xu B, Shi F. Comparative transcriptome between male fertile and male sterile alfalfa ( Medicago varia). PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2021; 27:1487-1498. [PMID: 34366591 PMCID: PMC8295440 DOI: 10.1007/s12298-021-01026-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Revised: 06/14/2021] [Accepted: 06/23/2021] [Indexed: 05/05/2023]
Abstract
UNLABELLED Male sterility is an important factor in improving crop quality and yield through heterosis breeding. In this study, we analyzed the transcriptomes of male fertile (MF) and male sterile (MS) alfalfa flower buds using the Illumina HiSeq™ 4000 platform. A total of 54.05 million clean reads were generated and assembled into 65,777 unigenes with an average length of 874 bp. The differentially expressed genes (DEGs) between the MF and MS flowers at three stages of pollen development were identified, and there were 3832, 5678 and 5925 DEGs respectively in stages 1, 2 and 3. GO and KEGG functional enrichment analysis revealed 12, 12, 6 and 12 key branch-point genes involved in circadian rhythm, transcription factors, pollen development and flavonoid biosynthesis. Our findings provide novel insights into the mechanism of male sterility in alfalfa. SUPPLEMENTARY INFORMATION The online version contains supplementary material available at 10.1007/s12298-021-01026-x.
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Affiliation(s)
- Jia Wang
- Key Laboratory of Grassland Resources, College of Grassland, Resources and Environment, Inner Mongolia Agricultural University, No.29 Erdos Street, Saihan District, Hohhot, 010011 Inner Mongolia China
- Department of Pharmacy, Baotou Medical College, Baotou, 014040 Inner Mongolia China
| | - Fang Tang
- Key Laboratory of Grassland Resources, College of Grassland, Resources and Environment, Inner Mongolia Agricultural University, No.29 Erdos Street, Saihan District, Hohhot, 010011 Inner Mongolia China
| | - Cuiping Gao
- Key Laboratory of Grassland Resources, College of Grassland, Resources and Environment, Inner Mongolia Agricultural University, No.29 Erdos Street, Saihan District, Hohhot, 010011 Inner Mongolia China
| | - Xia Gao
- Key Laboratory of Grassland Resources, College of Grassland, Resources and Environment, Inner Mongolia Agricultural University, No.29 Erdos Street, Saihan District, Hohhot, 010011 Inner Mongolia China
| | - Bo Xu
- Key Laboratory of Grassland Resources, College of Grassland, Resources and Environment, Inner Mongolia Agricultural University, No.29 Erdos Street, Saihan District, Hohhot, 010011 Inner Mongolia China
| | - Fengling Shi
- Key Laboratory of Grassland Resources, College of Grassland, Resources and Environment, Inner Mongolia Agricultural University, No.29 Erdos Street, Saihan District, Hohhot, 010011 Inner Mongolia China
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5
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Masuda K, Yamada T, Kagawa Y, Fukuda H. Time Lag Between Light and Heat Diurnal Cycles Modulates CIRCADIAN CLOCK ASSOCIATION 1 Rhythm and Growth in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 2021; 11:614360. [PMID: 33643331 PMCID: PMC7905214 DOI: 10.3389/fpls.2020.614360] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2020] [Accepted: 12/24/2020] [Indexed: 05/24/2023]
Abstract
Plant growth responses to cues such as light, temperature, and humidity enable the entrainment of the circadian rhythms with diurnal cycles. For example, the temperature variations between day and night affect plant growth and accompany the time lag to light cycle. Despite its importance, there has been no systematic investigation into time lags, and the mechanisms behind the entrainment of the circadian rhythms with multiple cycles remain unknown. Here, we investigated systemically the effects of the time lag on the circadian rhythm and growth in Arabidopsis thaliana. To investigate the entrainment status of the circadian clock, the rhythm of the clock gene CIRCADIAN CLOCK ASSOCIATION 1 (CCA1) was measured with a luciferase reporter assay. As a result, the rhythm was significantly modulated by the time lag with +10°C heating for 4 h every day but not -10°C cooling. A model based on coupled cellular oscillators successfully described these rhythm modulations. In addition, seedling growth depended on the time lag of the heating cycle but not that of the cooling cycle. Based on the relationship between the CCA1 rhythms and growth, we established an estimation method for the effects of the time lag. Our results found that plant growth relates to the CCA1 rhythm and provides a method by which to estimate the appropriate combination of light-dark and temperature cycles.
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Affiliation(s)
- Kosaku Masuda
- Graduate School of Engineering, Osaka Prefecture University, Osaka, Japan
- Japan Society for the Promotion of Science, Tokyo, Japan
| | - Tatsuya Yamada
- Graduate School of Engineering, Osaka Prefecture University, Osaka, Japan
| | - Yuya Kagawa
- Graduate School of Engineering, Osaka Prefecture University, Osaka, Japan
| | - Hirokazu Fukuda
- Graduate School of Engineering, Osaka Prefecture University, Osaka, Japan
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6
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Predicting the Potential Distribution of Two Varieties of Litsea coreana (Leopard-Skin Camphor) in China under Climate Change. FORESTS 2020. [DOI: 10.3390/f11111159] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Climate change considerably affects vegetation growth and may lead to changes in vegetation distribution. Leopard-skin camphor is an endangered species, and the main raw material for hawk tea, and has various pharmacodynamic functions. Studying the potential distribution of two leopard-skin camphor varieties under climate change should assist in the effective protection of these species. We collected the distribution point data for 130 and 89 Litsea coreana Levl. var. sinensis and L. coreana Levl. var. lanuginosa, respectively, and data for 22 environmental variables. We also predicted the potential distribution of the two varieties in China using the maximum entropy (MaxEnt) model and analyzed the key environmental factors affecting their distribution. Results showed that the two varieties are mainly located in the subtropical area south of the Qinling Mountains–Huai River line in the current and future climate scenarios, and the potentially suitable area for L. coreana Levl. var. lanuginosa is larger than that of L. coreana Levl. var. sinensis. Compared with current climatic conditions, the potentially suitable areas of the two leopard-skin camphor varieties will move to high-latitude and -altitude areas and the total suitable area will increase slightly, while moderately and highly suitable areas will be significantly reduced under future climatic scenarios. For example, under a 2070-RCP8.5 (representative of a high greenhouse gas emission scenario in the 2070s) climatic scenario, the highly suitable areas of L. coreana Levl. var. sinensis and L. coreana Levl. var. lanuginosa are 6900 and 300 km2, and account for only 10.27% and 0.21% of the current area, respectively. Temperature is the key environmental factor affecting the potential distribution of the two varieties, especially the mean daily diurnal range (Bio2) and the min temperature of the coldest month (Bio6). The results can provide a reference for relevant departments in taking protective measures to prevent the decrease or extinction of the species under climate change.
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7
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Reaching Natural Growth: The Significance of Light and Temperature Fluctuations in Plant Performance in Indoor Growth Facilities. PLANTS 2020; 9:plants9101312. [PMID: 33028014 PMCID: PMC7600060 DOI: 10.3390/plants9101312] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/29/2020] [Revised: 09/22/2020] [Accepted: 09/28/2020] [Indexed: 12/16/2022]
Abstract
Recommendations for near-natural plant growth under indoor conditions have been described without considering environmental fluctuations, which might have important consequences for researchers and plant producers when comparing results from indoor facilities with natural ecosystems or production. Previous authors proposed that differences in temperature, light quantity, and the lack of their variation are sources of deviations between indoor and outdoor experiments. Here, we investigated the effect of fluctuating light, temperature, and humidity in an indoor environment on plant performance. Seven plant species from different functional plant types were grown outdoors during summer and spring. The same species were then grown in indoor growth chambers under different scenarios of climate complexity in terms of fluctuations of temperature, air humidity, and light: 1) fixed night and day conditions, 2) daily sinusoidal changes, and 3) variable conditions tracking the climate records from the field trials. In each scenario, the average of the environmental variables was the same as in the respective field trial. Productivity-, gas exchange-, and leaf pigment-traits were measured in all plants at the end of the experiments. The plant trait responses were highly dependent on species and treatment, but general trends were observed. The variable condition yielded lower biomass compared to the fixed and sinusoidal conditions, together with a higher specific leaf area and increased chlorophyll concentrations. A principal component analysis (PCA) across all plant traits in response to climatic conditions suggested that at least a sinusoidal fluctuation is recommended for a more natural-like plant performance in indoor growth facilities. However, prevailing significant differences for several traits between field- and indoor-grown plants even under variable climates indicate that additional factors other than those controllable in standard phytotrons (e.g., wind speed and direction, leaf and soil temperature) can still significantly bias plant performance in indoor facilities.
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Ohtaka K, Yoshida A, Kakei Y, Fukui K, Kojima M, Takebayashi Y, Yano K, Imanishi S, Sakakibara H. Difference Between Day and Night Temperatures Affects Stem Elongation in Tomato ( Solanum lycopersicum) Seedlings via Regulation of Gibberellin and Auxin Synthesis. FRONTIERS IN PLANT SCIENCE 2020; 11:577235. [PMID: 33363551 PMCID: PMC7752778 DOI: 10.3389/fpls.2020.577235] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Accepted: 11/16/2020] [Indexed: 05/19/2023]
Abstract
Temperature is a critical environmental factor governing plant growth and development. The difference between day temperature (DT) and night temperature (NT), abbreviated as DIF, influences plant architecture. Subjecting plants to artificial DIF treatments is an effective strategy in ornamental horticulture. For example, negative DIF (when DT - NT < 0) generally inhibits stem elongation, resulting in dwarf plants. However, the mechanisms underlying stem growth regulation by DIF remains to be completely elucidated. In this study, we aimed to analyze the growth, transcriptome, and phytohormone profiles of tomato (Solanum lycopersicum) seedlings grown under different DIF treatments. Under positive DIF (when DT - NT > 0), in contrast to the control temperature (25°C/20°C, DT/NT), high temperature (30°C/25°C) increased stem length and thickness, as well as the number of xylem vessels. Conversely, compared with the positive high temperature DIF treatment (30°C/25°C), under negative DIF treatment (25°C/30°C) stem elongation was inhibited, but stem thickness and the number of xylem vessels were not affected. The negative DIF treatment decreased the expression of gibberellin (GA)-, auxin-, and cell wall-related genes in the epicotyl, as well as the concentrations of GAs and indole-3-acetic acid (IAA). The expression of these genes and concentrations of these hormones increased under high temperature compared to those under the control temperature positive DIF. Our results suggest that stem length in tomato seedlings is controlled by changes in GA and IAA biosynthesis in response to varying day and night temperatures.
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Affiliation(s)
- Kinuka Ohtaka
- RIKEN Center for Sustainable Resource Science, Yokohama, Japan
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan
- Department of Chemical and Biological Sciences, Faculty of Science, Japan Women’s University, Tokyo, Japan
| | - Akiko Yoshida
- RIKEN Center for Sustainable Resource Science, Yokohama, Japan
- Department of International Environmental and Agricultural Science, Tokyo University of Agriculture and Technology, Tokyo, Japan
| | - Yusuke Kakei
- NARO, Institute of Vegetable and Floriculture Science, Tsu, Japan
| | - Kosuke Fukui
- RIKEN Center for Sustainable Resource Science, Yokohama, Japan
- Department of Biochemistry, Okayama University of Science, Okayama, Japan
| | - Mikiko Kojima
- RIKEN Center for Sustainable Resource Science, Yokohama, Japan
| | | | - Kanako Yano
- NARO, Institute of Vegetable and Floriculture Science, Tsu, Japan
| | | | - Hitoshi Sakakibara
- RIKEN Center for Sustainable Resource Science, Yokohama, Japan
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan
- *Correspondence: Hitoshi Sakakibara,
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Zhang S, Isabel N, Huang JG, Ren H, Rossi S. Responses of bud-break phenology to daily-asymmetric warming: daytime warming intensifies the advancement of bud break. INTERNATIONAL JOURNAL OF BIOMETEOROLOGY 2019; 63:1631-1640. [PMID: 31385094 DOI: 10.1007/s00484-019-01776-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2019] [Revised: 07/22/2019] [Accepted: 07/26/2019] [Indexed: 06/10/2023]
Abstract
There is evidence that the ongoing climate change is happening through nighttime rather than daytime warming. How such a daily-asymmetric warming modifies plant phenology is still unclear. We investigated the effects of asymmetric warming on bud break by daily monitoring seedlings belonging to 26 black spruce [Picea mariana (Mill.) BSP.] and 15 balsam fir [Abies balsamea (L.) Mill.] provenances from the native range in Canada. Seedlings were subjected to either daytime or nighttime warming in three growth chambers at temperatures ranging between 10 and 24 °C. On average, a warming of 4 °C advanced the timings of bud break in both species by 2.4 days, with the later phases being more sensitive to the treatment. Bud break of both species responded more strongly to daytime warming, with the bud break occurred 1.2 and 3.2 days earlier under daytime than nighttime warming in black spruce and balsam fir, respectively. A marked ecotypic differentiation was only observed in black spruce that originated from provenances distributed broadly across Canada, with seedlings from the warmest provenance completing bud break 8.3 days later than those from the coldest one. However, no significant effect of provenance was observed for balsam fir, the narrowly distributed species. Overall, the above results suggest that a higher temporal resolution such as temperatures during daytime and nighttime, and higher spatial resolution should be taken into account to improve the accuracy of phenological model predictions under global change scenarios. Phenological models based on daily average temperature should take into account the diverging impacts of asymmetric warming on plant phenology. Our findings may indicate that the influence of warming on plant phenology may be less dramatic than expected.
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Affiliation(s)
- Shaokang Zhang
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- Center of Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, China
- Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- University of the Chinese Academy of Sciences, Beijing, 100049, China
| | - Nathalie Isabel
- Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre, Québec, G1V4C7, Canada
| | - Jian-Guo Huang
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
- Center of Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, China.
- Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
| | - Hai Ren
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- Center of Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, China
- Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Sergio Rossi
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- Département des Sciences Fondamentales, Université du Québec à Chicoutimi, Chicoutimi, G7H 2B1, Canada
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10
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Parent B, Millet EJ, Tardieu F. The use of thermal time in plant studies has a sound theoretical basis provided that confounding effects are avoided. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:2359-2370. [PMID: 31091318 DOI: 10.1093/jxb/ery402] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2018] [Accepted: 11/06/2018] [Indexed: 06/09/2023]
Abstract
The use of thermal time is essential in plant studies and crop growth modeling because correcting time for temperature allows working in fluctuating conditions as if temperature was constant. However, thermal time is often seen as a loose concept because of a multitude of thermal functions and case-specific parameter values. Our hypothesis is that these different formalisms and parameterization could emerge from common principles and a common response of plant development to temperature, but with several counfounding factors which are not taken into account. We first show that these calculations of thermal time are based on sound common principles and mathematical formalisms. We test, via a modelling exercise of nine case studies using maize plants grown in three field sites, how a given "ground truth" response of plant development rate to temperature can be affected if an experimenter either considers or ignores confounding factors. We also show that apparent differences in temperature responses between phenological stages of the growth cycle, between day and night, or between plant genotypes may be due to the confounding effects of evaporative demand, the range of temperatures, and the time interval at which measurements are taken. On the basis of our findings, we propose that the critical point in the use of a given formalism of thermal time calculation is to ensure that the chosen model is compatible with the temporal definition, temperature range, and environmental scenario in the considered dataset.
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Affiliation(s)
- Boris Parent
- LEPSE, Université Montpellier, INRA, Montpellier SupAgro, Montpellier, France
| | - Emilie J Millet
- LEPSE, Université Montpellier, INRA, Montpellier SupAgro, Montpellier, France
| | - François Tardieu
- LEPSE, Université Montpellier, INRA, Montpellier SupAgro, Montpellier, France
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11
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Huang X, Lei Y, Guan H, Hao Y, Liu H, Sun G, Chen R, Song S. Transcriptomic analysis of the regulation of stalk development in flowering Chinese cabbage (Brassica campestris) by RNA sequencing. Sci Rep 2017; 7:15517. [PMID: 29138433 PMCID: PMC5686075 DOI: 10.1038/s41598-017-15699-6] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2017] [Accepted: 10/31/2017] [Indexed: 11/09/2022] Open
Abstract
Flowering Chinese cabbage is a stalk vegetable whose quality and yield are directly related to stalk development. However, no comprehensive investigations on stalk development have been performed. To address this issue, the present study used RNA sequencing to investigate transcriptional regulation at three key stages (seedling, bolting, and flowering) of stalk development in flowering Chinese cabbage. Anatomical analysis revealed that cell division was the main mode of stalk thickening and elongation at all key stages. Among the 35,327 genes expressed in shoot apices, 34,448 were annotated and 879 were identified as novel transcripts. We identified 11,514 differentially expressed genes (DEGs) among the three stages of stalk development. Functional analysis revealed that these DEGs were significantly enriched in ‘ribosome’ and ‘plant hormone signal transduction’ pathways and were involved in hormone signal transduction, cell cycle progression, and the regulation of flowering time. The roles of these genes in stalk development were explored, and a putative gene-regulation network for the stalk flowering time was established. These findings provide insight into the molecular mechanisms of stalk development in flowering Chinese cabbage that provides a new theoretical basis for stalk vegetable breeding.
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Affiliation(s)
- Xinmin Huang
- Guangdong Provincial Engineering Technology Research Center for Protected Horticulture, College of Horticulture, South China Agricultural University, Guangzhou, 510642, Guangdong, China
| | - Yuling Lei
- Guangdong Provincial Engineering Technology Research Center for Protected Horticulture, College of Horticulture, South China Agricultural University, Guangzhou, 510642, Guangdong, China
| | - Hongling Guan
- Guangdong Provincial Engineering Technology Research Center for Protected Horticulture, College of Horticulture, South China Agricultural University, Guangzhou, 510642, Guangdong, China
| | - Yanwei Hao
- Guangdong Provincial Engineering Technology Research Center for Protected Horticulture, College of Horticulture, South China Agricultural University, Guangzhou, 510642, Guangdong, China
| | - Houcheng Liu
- Guangdong Provincial Engineering Technology Research Center for Protected Horticulture, College of Horticulture, South China Agricultural University, Guangzhou, 510642, Guangdong, China
| | - Guangwen Sun
- Guangdong Provincial Engineering Technology Research Center for Protected Horticulture, College of Horticulture, South China Agricultural University, Guangzhou, 510642, Guangdong, China
| | - Riyuan Chen
- Guangdong Provincial Engineering Technology Research Center for Protected Horticulture, College of Horticulture, South China Agricultural University, Guangzhou, 510642, Guangdong, China.
| | - Shiwei Song
- Guangdong Provincial Engineering Technology Research Center for Protected Horticulture, College of Horticulture, South China Agricultural University, Guangzhou, 510642, Guangdong, China.
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12
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Liu K, Li H, Li W, Zhong J, Chen Y, Shen C, Yuan C. Comparative transcriptomic analyses of normal and malformed flowers in sugar apple (Annona squamosa L.) to identify the differential expressed genes between normal and malformed flowers. BMC PLANT BIOLOGY 2017; 17:170. [PMID: 29061115 PMCID: PMC5653983 DOI: 10.1186/s12870-017-1135-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2017] [Accepted: 10/18/2017] [Indexed: 06/03/2023]
Abstract
BACKGROUND Sugar apple (Annona squamosa L.), a popular fruit with high medicinal and nutritional properties, is widely cultivated in tropical South Asia and America. The malformed flower is a major cause for a reduction in production of sugar apple. However, little information is available on the differences between normal and malformed flowers of sugar apple. RESULTS To gain a comprehensive perspective on the differences between normal and malformed flowers of sugar apple, cDNA libraries from normal and malformation flowers were prepared independently for Illumina sequencing. The data generated a total of 70,189,896 reads that were integrated and assembled into 55,097 unigenes with a mean length of 783 bp. A large number of differentially expressed genes (DEGs) were identified. Among these DEGs, 701 flower development-associated transcript factor encoding genes were included. Furthermore, a large number of flowering- and hormone-related DEGs were also identified, and most of these genes were down-regulated expressed in the malformation flowers. The expression levels of 15 selected genes were validated using quantitative-PCR. The contents of several endogenous hormones were measured. The malformed flowers displayed lower endogenous hormone levels compared to the normal flowers. CONCLUSIONS The expression data as well as hormone levels in our study will serve as a comprehensive resource for investigating the regulation mechanism involved in floral organ development in sugar apple.
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Affiliation(s)
- Kaidong Liu
- Life Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong 524048 People’s Republic of China
| | - Haili Li
- Life Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong 524048 People’s Republic of China
| | - Weijin Li
- Life Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong 524048 People’s Republic of China
| | - Jundi Zhong
- Life Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong 524048 People’s Republic of China
| | - Yan Chen
- Life Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong 524048 People’s Republic of China
| | - Chenjia Shen
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 310036 China
| | - Changchun Yuan
- Life Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong 524048 People’s Republic of China
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13
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Wang Q, An B, Shi H, Luo H, He C. High Concentration of Melatonin Regulates Leaf Development by Suppressing Cell Proliferation and Endoreduplication in Arabidopsis. Int J Mol Sci 2017; 18:ijms18050991. [PMID: 28475148 PMCID: PMC5454904 DOI: 10.3390/ijms18050991] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2017] [Revised: 04/22/2017] [Accepted: 05/02/2017] [Indexed: 02/07/2023] Open
Abstract
N-acetyl-5-methoxytryptamine (Melatonin), as a crucial messenger in plants, functions in adjusting biological rhythms, stress tolerance, plant growth and development. Several studies have shown the retardation effect of exogenous melatonin treatment on plant growth and development. However, the in vivo role of melatonin in regulating plant leaf growth and the underlying mechanism are still unclear. In this study, we found that high concentration of melatonin suppressed leaf growth in Arabidopsis by reducing both cell size and cell number. Further kinetic analysis of the fifth leaves showed that melatonin remarkably inhibited cell division rate. Additionally, flow cytometic analysis indicated that melatonin negatively regulated endoreduplication during leaf development. Consistently, the expression analysis revealed that melatonin regulated the transcriptional levels of key genes of cell cycle and ribosome. Taken together, this study suggests that high concentration of melatonin negatively regulated the leaf growth and development in Arabidopsis, through modulation of endoreduplication and the transcripts of cell cycle and ribosomal key genes.
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Affiliation(s)
- Qiannan Wang
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources and College of Biology, Institute of Tropical Agriculture and Forestry, Hainan University, Haikou 570228, China.
| | - Bang An
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources and College of Biology, Institute of Tropical Agriculture and Forestry, Hainan University, Haikou 570228, China.
| | - Haitao Shi
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources and College of Biology, Institute of Tropical Agriculture and Forestry, Hainan University, Haikou 570228, China.
| | - Hongli Luo
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources and College of Biology, Institute of Tropical Agriculture and Forestry, Hainan University, Haikou 570228, China.
| | - Chaozu He
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources and College of Biology, Institute of Tropical Agriculture and Forestry, Hainan University, Haikou 570228, China.
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14
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Wendell M, Ripel L, Lee Y, Rognli OA, Torre S, Olsen JE. Thermoperiodic Control of Floral Induction Involves Modulation of the Diurnal FLOWERING LOCUS T Expression Pattern. PLANT & CELL PHYSIOLOGY 2017; 58:466-477. [PMID: 28028164 DOI: 10.1093/pcp/pcw221] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2016] [Accepted: 12/05/2016] [Indexed: 06/06/2023]
Abstract
Thermoperiodism is defined as the ability to discriminate between day temperature (DT) and night temperature (NT). Our aim was to shed light on the mechanistic basis of thermoperiodic floral induction with acceleration under lower DT than NT compared with other DT-NT combinations at the same average daily temperature (ADT), a response exploited in temperate area greenhouses. Arabidopsis thaliana floral pathway mutants and a lhy circadian clock mutant as well as the expression of floral integrators and LHY (LATE ELONGATED HYPOCOTYL) were studied under different DT-NT combinations, all at the same ADT. We show that acceleration of floral induction under lower DT than NT is linked to increased FT expression early during the day and generally increased LFY expression preceding visible flower buds, compared with higher DT than NT or equal DT and NT. Consistent with FLOWERING LOCUS T (FT) action through LEAFY (LFY), time to floral transition in ft-1 and lfy-1 was similar under all treatments, in contrast to the situation for soc1-1, which behaved like the wild type (WT). The lhy-21 mutants did not discriminate between opposite DT-NT combinations, whereas LHY expression in the WT differed in these temperature regimes. This might suggest that LHY plays a role in thermoperiodic control of floral induction. We conclude that thermoperiodic control of floral transition is associated with modulation of the diurnal expression patterns of FT, with timing of temperature alteration being important rather than ADT.
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Affiliation(s)
- Micael Wendell
- Department of Plant and Environmental Sciences, Norwegian University of Life Sciences, Norway
| | - Linda Ripel
- Department of Plant and Environmental Sciences, Norwegian University of Life Sciences, Norway
| | - YeonKyeong Lee
- Department of Plant Science and Research Institute for Agriculture and Life Sciences, and Plant Genomics and Breeding Institute, Seoul National University, Seoul, South Korea
| | - Odd Arne Rognli
- Department of Plant Sciences, Faculty of Biosciences, Norwegian University of Life Sciences, Ås, Norway
| | - Sissel Torre
- Norwegian University of Life Sciences, Department of Mathematical Sciences and Technology, Aas, Norway
| | - Jorunn E Olsen
- Department of Plant Sciences, Faculty of Biosciences, Norwegian University of Life Sciences, Ås, Norway
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15
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Guo X, Yu C, Luo L, Wan H, Zhen N, Xu T, Tan J, Pan H, Zhang Q. Transcriptome of the floral transition in Rosa chinensis 'Old Blush'. BMC Genomics 2017; 18:199. [PMID: 28228130 PMCID: PMC5322666 DOI: 10.1186/s12864-017-3584-y] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2016] [Accepted: 02/13/2017] [Indexed: 12/19/2022] Open
Abstract
BACKGROUND The floral transition plays a vital role in the life of ornamental plants. Despite progress in model plants, the molecular mechanisms of flowering regulation remain unknown in perennial plants. Rosa chinensis 'Old Blush' is a unique plant that can flower continuously year-round. In this study, gene expression profiles associated with the flowering transition were comprehensively analyzed during floral transition in the rose. RESULTS According to the transcriptomic profiles, 85,663 unigenes and 1,637 differentially expressed genes (DEGs) were identified, among which 32 unigenes were involved in the circadian clock, sugar metabolism, hormone, and autonomous pathways. A hypothetical model for the regulation of floral transition was proposed in which the candidate genes function synergistically the floral transition process. Hormone contents and biosynthesis and metabolism genes fluctuated during the rose floral transition process. Gibberellins (GAs) inhibited rose floral transition, the content of GAs gradually decreased and GA2ox and SCL13 were upregulated from vegetative (VM) meristem to floral meristem (FM). Auxin plays an affirmative part in mediating floral transition, auxin content and auxin-related gene expression levels were gradually upregulated during the floral transition of the rose. However, ABA content and ABA signal genes were gradually downregulated, suggesting that ABA passively regulates the rose floral transition by participating in sugar signaling. Furthermore, sugar content and sugar metabolism genes increased during floral transition in the rose, which may be a further florigenic signal that activates floral transition. Additionally, FRI, FY, DRM1, ELIP, COP1, CO, and COL16 are involved in the circadian clock and autonomous pathway, respectively, and they play a positively activating role in regulating floral transition. Overall, physiological changes associated with genes involved in the circadian clock or autonomous pathway collectively regulated the rose floral transition. CONCLUSIONS Our results summarize a valuable collective of gene expression profiles characterizing the rose floral transition. The DEGs are candidates for functional analyses of genes affecting the floral transition in the rose, which is a precious resource that reveals the molecular mechanism of mediating floral transition in other perennial plants.
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Affiliation(s)
- Xuelian Guo
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - Chao Yu
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - Le Luo
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - Huihua Wan
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - Ni Zhen
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - Tingliang Xu
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - Jiongrui Tan
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - Huitang Pan
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China
| | - Qixiang Zhang
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China.
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16
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Rossi S, Isabel N. Bud break responds more strongly to daytime than night-time temperature under asymmetric experimental warming. GLOBAL CHANGE BIOLOGY 2017; 23:446-454. [PMID: 27196979 DOI: 10.1111/gcb.13360] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2016] [Accepted: 05/09/2016] [Indexed: 06/05/2023]
Abstract
Global warming is diurnally asymmetric, leading to a less cold, rather than warmer, climate. We investigated the effects of asymmetric experimental warming on plant phenology by testing the hypothesis that daytime warming is more effective in advancing bud break than night-time warming. Bud break was monitored daily in Picea mariana seedlings belonging to 20 provenances from Eastern Canada and subjected to daytime and night-time warming in growth chambers at temperatures varying between 8 and 16 °C. The higher advancements of bud break and shorter times required to complete the phenological phases occurred with daytime warming. Seedlings responded to night-time warming, but still with less advancement of bud break than under daytime warming. No advancement was observed when night-time warming was associated with a daytime cooling. The effect of the treatments was uniform across provenances. Our observations realized under controlled conditions allowed to experimentally demonstrate that bud break can advance under night-time warming, but to a lesser extent than under daytime warming. Prediction models using daily timescales could neglect the diverging influence of asymmetric warming and should be recalibrated for higher temporal resolutions.
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Affiliation(s)
- Sergio Rossi
- Département des Sciences Fondamentales, Université du Québec à Chicoutimi, 555 boulevard de l'Université, Chicoutimi, QC, G7H 2B1, Canada
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Chinese Academy of Sciences, 723 Xingke Road, Tianhe District, Guangzhou, 510650, China
- Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, 723 Xingke Road, Tianhe District, Guangzhou, 510650, China
| | - Nathalie Isabel
- Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre, 1055 rue du P.E.P.S., Québec, QC, G1V4C7, Canada
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17
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Burghardt LT, Runcie DE, Wilczek AM, Cooper MD, Roe JL, Welch SM, Schmitt J. Fluctuating, warm temperatures decrease the effect of a key floral repressor on flowering time in Arabidopsis thaliana. THE NEW PHYTOLOGIST 2016; 210:564-76. [PMID: 26681345 DOI: 10.1111/nph.13799] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2015] [Accepted: 11/11/2015] [Indexed: 05/28/2023]
Abstract
The genetic basis of growth and development is often studied in constant laboratory environments; however, the environmental conditions that organisms experience in nature are often much more dynamic. We examined how daily temperature fluctuations, average temperature, day length and vernalization influence the flowering time of 59 genotypes of Arabidopsis thaliana with allelic perturbations known to affect flowering time. For a subset of genotypes, we also assessed treatment effects on morphology and growth. We identified 17 genotypes, many of which have high levels of the floral repressor FLOWERING LOCUS C (FLC), that bolted dramatically earlier in fluctuating - as opposed to constant - warm temperatures (mean = 22°C). This acceleration was not caused by transient VERNALIZATION INSENSITIVE 3-mediated vernalization, differential growth rates or exposure to high temperatures, and was not apparent when the average temperature was cool (mean = 12°C). Further, in constant temperatures, contrary to physiological expectations, these genotypes flowered more rapidly in cool than in warm environments. Fluctuating temperatures often reversed these responses, restoring faster bolting in warm conditions. Independently of bolting time, warm fluctuating temperature profiles also caused morphological changes associated with shade avoidance or 'high-temperature' phenotypes. Our results suggest that previous studies have overestimated the effect of the floral repressor FLC on flowering time by using constant temperature laboratory conditions.
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Affiliation(s)
- Liana T Burghardt
- Department of Ecology and Evolutionary Biology, Brown University, Providence, RI, 02912, USA
- Biology Department, Duke University, Durham, NC, 27708, USA
| | - Daniel E Runcie
- Department of Evolution and Ecology, University of California at Davis, Davis, CA, 95616, USA
| | - Amity M Wilczek
- Department of Ecology and Evolutionary Biology, Brown University, Providence, RI, 02912, USA
- Deep Springs College, Big Pine, CA, 93513, USA
| | - Martha D Cooper
- Department of Ecology and Evolutionary Biology, Brown University, Providence, RI, 02912, USA
| | - Judith L Roe
- Department of Biology, University of Maine at Presque Isle, Presque Isle, ME, 04769, USA
| | - Stephen M Welch
- Department of Agronomy, Kansas State University, Manhattan, KS, 66506, USA
| | - Johanna Schmitt
- Department of Ecology and Evolutionary Biology, Brown University, Providence, RI, 02912, USA
- Deep Springs College, Big Pine, CA, 93513, USA
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18
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Burghardt LT, Edwards BR, Donohue K. Multiple paths to similar germination behavior in Arabidopsis thaliana. THE NEW PHYTOLOGIST 2016; 209:1301-12. [PMID: 26452074 DOI: 10.1111/nph.13685] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2015] [Accepted: 08/24/2015] [Indexed: 05/25/2023]
Abstract
Germination timing influences plant fitness, and its sensitivity to temperature may cause it to change as climate shifts. These changes are likely to be complex because temperatures that occur during seed maturation and temperatures that occur post-dispersal interact to define germination timing. We used the model organism Arabidopsis thaliana to determine how flowering time (which defines seed-maturation temperature) and post-dispersal temperature influence germination and the expression of genetic variation for germination. Germination responses to temperature (germination envelopes) changed as seeds aged, or after-ripened, and these germination trajectories depended on seed-maturation temperature and genotype. Different combinations of genotype, seed-maturation temperature, and after-ripening produced similar germination envelopes. Likewise, different genotypes and seed-maturation temperatures combined to produce similar germination trajectories. Differences between genotypes were most likely to be observed at high and low germination temperatures. The germination behavior of some genotypes responds weakly to maternal temperature but others are highly plastic. We hypothesize that weak dormancy induction could synchronize germination of seeds dispersed at different times. By contrast, we hypothesize that strongly responsive genotypes may spread offspring germination over several possible germination windows. Considering germination responses to temperature is important for predicting phenology expression and evolution in future climates.
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Affiliation(s)
- Liana T Burghardt
- Department of Biology, Duke University, Durham, NC, 27708, USA
- Department of Plant Biology, University of Minnesota, St Paul, MN, 55108, USA
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19
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Bours R, Kohlen W, Bouwmeester HJ, van der Krol A. Thermoperiodic control of hypocotyl elongation depends on auxin-induced ethylene signaling that controls downstream PHYTOCHROME INTERACTING FACTOR3 activity. PLANT PHYSIOLOGY 2015; 167:517-30. [PMID: 25516603 PMCID: PMC4326743 DOI: 10.1104/pp.114.254425] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2014] [Accepted: 12/11/2014] [Indexed: 05/19/2023]
Abstract
We show that antiphase light-temperature cycles (negative day-night temperature difference [-DIF]) inhibit hypocotyl growth in Arabidopsis (Arabidopsis thaliana). This is caused by reduced cell elongation during the cold photoperiod. Cell elongation in the basal part of the hypocotyl under -DIF was restored by both 1-aminocyclopropane-1-carboxylic acid (ACC; ethylene precursor) and auxin, indicating limited auxin and ethylene signaling under -DIF. Both auxin biosynthesis and auxin signaling were reduced during -DIF. In addition, expression of several ACC Synthase was reduced under -DIF but could be restored by auxin application. In contrast, the reduced hypocotyl elongation of ethylene biosynthesis and signaling mutants could not be complemented by auxin, indicating that auxin functions upstream of ethylene. The PHYTOCHROME INTERACTING FACTORS (PIFs) PIF3, PIF4, and PIF5 were previously shown to be important regulators of hypocotyl elongation. We now show that, in contrast to pif4 and pif5 mutants, the reduced hypocotyl length in pif3 cannot be rescued by either ACC or auxin. In line with this, treatment with ethylene or auxin inhibitors reduced hypocotyl elongation in PIF4 overexpressor (PIF4ox) and PIF5ox but not PIF3ox plants. PIF3 promoter activity was strongly reduced under -DIF but could be restored by auxin application in an ACC Synthase-dependent manner. Combined, these results show that PIF3 regulates hypocotyl length downstream, whereas PIF4 and PIF5 regulate hypocotyl length upstream of an auxin and ethylene cascade. We show that, under -DIF, lower auxin biosynthesis activity limits the signaling in this pathway, resulting in low activity of PIF3 and short hypocotyls.
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Affiliation(s)
- Ralph Bours
- Laboratory of Plant Physiology, Wageningen University, 6708 PB Wageningen, The Netherlands (R.B., H.J.B., A.v.d.K.); andDepartment of Plant Breeding and Genetics, Max Planck Institute for Plant Breeding Research, D-50829 Cologne, Germany (W.K.)
| | - Wouter Kohlen
- Laboratory of Plant Physiology, Wageningen University, 6708 PB Wageningen, The Netherlands (R.B., H.J.B., A.v.d.K.); andDepartment of Plant Breeding and Genetics, Max Planck Institute for Plant Breeding Research, D-50829 Cologne, Germany (W.K.)
| | - Harro J Bouwmeester
- Laboratory of Plant Physiology, Wageningen University, 6708 PB Wageningen, The Netherlands (R.B., H.J.B., A.v.d.K.); andDepartment of Plant Breeding and Genetics, Max Planck Institute for Plant Breeding Research, D-50829 Cologne, Germany (W.K.)
| | - Alexander van der Krol
- Laboratory of Plant Physiology, Wageningen University, 6708 PB Wageningen, The Netherlands (R.B., H.J.B., A.v.d.K.); andDepartment of Plant Breeding and Genetics, Max Planck Institute for Plant Breeding Research, D-50829 Cologne, Germany (W.K.)
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20
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Olsen JE, Lee Y, Junttila O. Effect of alternating day and night temperature on short day-induced bud set and subsequent bud burst in long days in Norway spruce. FRONTIERS IN PLANT SCIENCE 2014; 5:691. [PMID: 25538722 PMCID: PMC4260492 DOI: 10.3389/fpls.2014.00691] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2014] [Accepted: 11/19/2014] [Indexed: 05/08/2023]
Abstract
Young seedlings of the conifer Norway spruce exhibit short day (SD)-induced cessation of apical growth and bud set. Although different, constant temperatures under SD are known to modulate timing of bud set and depth of dormancy with development of deeper dormancy under higher compared to lower temperature, systematic studies of effects of alternating day (DT) and night temperatures (NT) are limited. To shed light on this, seedlings of different provenances of Norway spruce were exposed to a wide range of DT-NT combinations during bud development, followed by transfer to forcing conditions of long days (LD) and 18°C, directly or after different periods of chilling. Although no specific effect of alternating DT/NT was found, the results demonstrate that the effects of DT under SD on bud set and subsequent bud break are significantly modified by NT in a complex way. The effects on bud break persisted after chilling. Since time to bud set correlated with the daily mean temperature under SD at DTs of 18 and 21°C, but not a DT of 15°C, time to bud set apparently also depend on the specific DT, implying that the effect of NT depends on the actual DT. Although higher temperature under SD generally results in later bud break after transfer to forcing conditions, the fastest bud flush was observed at intermediate NTs. This might be due to a bud break-hastening chilling effect of intermediate compared to higher temperatures, and delayed bud development to a stage where bud burst can occur, under lower temperatures. Also, time to bud burst in un-chilled seedlings decreased with increasing SD-duration, suggesting that bud development must reach a certain stage before the processes leading to bud burst are initiated. The present results also indicate that low temperature during bud development had a larger effect on the most southern compared to the most northern provenance studied. Decreasing time to bud burst was observed with increasing northern latitude of origin in un-chilled as well as chilled plants. In conclusion, being a highly temperature-dependent process, bud development is strongly delayed by low temperature, and the effects of DT is significantly modified by NT in a complex manner.
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Affiliation(s)
- Jorunn E. Olsen
- Department of Plant Sciences, Norwegian University of Life SciencesÅs, Norway
| | - YeonKyeong Lee
- Department of Plant Sciences, Norwegian University of Life SciencesÅs, Norway
| | - Olavi Junttila
- Department of Arctic and Marine Biology, University of TromsøTromsø, Norway
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21
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Bours R, van Zanten M, Pierik R, Bouwmeester H, van der Krol A. Antiphase light and temperature cycles affect PHYTOCHROME B-controlled ethylene sensitivity and biosynthesis, limiting leaf movement and growth of Arabidopsis. PLANT PHYSIOLOGY 2013; 163:882-95. [PMID: 23979970 PMCID: PMC3793065 DOI: 10.1104/pp.113.221648] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2013] [Accepted: 08/22/2013] [Indexed: 05/19/2023]
Abstract
In the natural environment, days are generally warmer than the night, resulting in a positive day/night temperature difference (+DIF). Plants have adapted to these conditions, and when exposed to antiphase light and temperature cycles (cold photoperiod/warm night [-DIF]), most species exhibit reduced elongation growth. To study the physiological mechanism of how light and temperature cycles affect plant growth, we used infrared imaging to dissect growth dynamics under +DIF and -DIF in the model plant Arabidopsis (Arabidopsis thaliana). We found that -DIF altered leaf growth patterns, decreasing the amplitude and delaying the phase of leaf movement. Ethylene application restored leaf growth in -DIF conditions, and constitutive ethylene signaling mutants maintain robust leaf movement amplitudes under -DIF, indicating that ethylene signaling becomes limiting under these conditions. In response to -DIF, the phase of ethylene emission advanced 2 h, but total ethylene emission was not reduced. However, expression analysis on members of the 1-aminocyclopropane-1-carboxylic acid (ACC) synthase ethylene biosynthesis gene family showed that ACS2 activity is specifically suppressed in the petiole region under -DIF conditions. Indeed, petioles of plants under -DIF had reduced ACC content, and application of ACC to the petiole restored leaf growth patterns. Moreover, acs2 mutants displayed reduced leaf movement under +DIF, similar to wild-type plants under -DIF. In addition, we demonstrate that the photoreceptor PHYTOCHROME B restricts ethylene biosynthesis and constrains the -DIF-induced phase shift in rhythmic growth. Our findings provide a mechanistic insight into how fluctuating temperature cycles regulate plant growth.
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Affiliation(s)
- Ralph Bours
- Laboratory of Plant Physiology, Wageningen University, 6708 PB Wageningen, The Netherlands (R.B., H.B., A.v.d.K.); and
- Plant Ecophysiology, Institute of Environmental Biology (M.v.Z., R.P.), and Molecular Plant Physiology (M.v.Z.), Utrecht University, 3584 CH Utrecht, The Netherlands
| | - Martijn van Zanten
- Laboratory of Plant Physiology, Wageningen University, 6708 PB Wageningen, The Netherlands (R.B., H.B., A.v.d.K.); and
- Plant Ecophysiology, Institute of Environmental Biology (M.v.Z., R.P.), and Molecular Plant Physiology (M.v.Z.), Utrecht University, 3584 CH Utrecht, The Netherlands
| | - Ronald Pierik
- Laboratory of Plant Physiology, Wageningen University, 6708 PB Wageningen, The Netherlands (R.B., H.B., A.v.d.K.); and
- Plant Ecophysiology, Institute of Environmental Biology (M.v.Z., R.P.), and Molecular Plant Physiology (M.v.Z.), Utrecht University, 3584 CH Utrecht, The Netherlands
| | - Harro Bouwmeester
- Laboratory of Plant Physiology, Wageningen University, 6708 PB Wageningen, The Netherlands (R.B., H.B., A.v.d.K.); and
- Plant Ecophysiology, Institute of Environmental Biology (M.v.Z., R.P.), and Molecular Plant Physiology (M.v.Z.), Utrecht University, 3584 CH Utrecht, The Netherlands
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22
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Chew YH, Wilczek AM, Williams M, Welch SM, Schmitt J, Halliday KJ. An augmented Arabidopsis phenology model reveals seasonal temperature control of flowering time. THE NEW PHYTOLOGIST 2012; 194:654-665. [PMID: 22352314 DOI: 10.1111/j.1469-8137.2012.04069.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
• In this study, we used a combination of theoretical (models) and experimental (field data) approaches to investigate the interaction between light and temperature signalling in the control of Arabidopsis flowering. • We utilised our recently published phenology model that describes the flowering time of Arabidopsis grown under a range of field conditions. We first examined the ability of the model to predict the flowering time of field plantings at different sites and seasons in light of the specific meteorological conditions that pertained. • Our analysis suggested that the synchrony of temperature and light cycles is important in promoting floral initiation. New features were incorporated into the model that improved its predictive accuracy across seasons. Using both laboratory and field data, our study has revealed an important seasonal effect of night temperatures on flowering time. Further model adjustments to describe phytochrome (phy) mutants supported our findings and implicated phyB in the temporal gating of temperature-induced flowering. • Our study suggests that different molecular pathways interact and predominate in natural environments that change seasonally. Temperature effects are mediated largely during the photoperiod during spring/summer (long days) but, as days shorten in the autumn, night temperatures become increasingly important.
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Affiliation(s)
- Yin Hoon Chew
- School of Biological Sciences, Edinburgh University, Mayfield Road, Edinburgh EH9 3JH, UK
- Synthetic & Systems Biology Centre, C. H. Waddington Building, King's Buildings, Edinburgh EH9 3JD, UK
| | | | - Mathew Williams
- School of GeoSciences, Crew Building, King's Buildings, West Mains Road, Edinburgh EH9 3JN, UK
| | - Stephen M Welch
- Department of Agronomy, Kansas State University, Manhattan, KS 66506, USA
| | - Johanna Schmitt
- Department of Ecology and Evolutionary Biology, Brown University, Providence, RI 02912, USA
| | - Karen J Halliday
- School of Biological Sciences, Edinburgh University, Mayfield Road, Edinburgh EH9 3JH, UK
- Synthetic & Systems Biology Centre, C. H. Waddington Building, King's Buildings, Edinburgh EH9 3JD, UK
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23
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Sidaway-Lee K, Josse EM, Brown A, Gan Y, Halliday KJ, Graham IA, Penfield S. SPATULA links daytime temperature and plant growth rate. Curr Biol 2010; 20:1493-7. [PMID: 20705468 DOI: 10.1016/j.cub.2010.07.028] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2010] [Revised: 07/14/2010] [Accepted: 07/15/2010] [Indexed: 12/18/2022]
Abstract
Plants exhibit a wide variety of growth rates that are known to be determined by genetic and environmental factors, and different plants grow optimally at different temperatures, indicating that this is a genetically determined character. Moderate decreases in ambient temperature inhibit vegetative growth, but the mechanism is poorly understood, although a decrease in gibberellin (GA) levels is known to be required. Here we demonstrate that the basic helix-loop-helix transcription factor SPATULA (SPT), previously known to be a regulator of low temperature-responsive germination, mediates the repression of growth by cool daytime temperatures but has little or no growth-regulating role under warmer conditions. We show that only daytime temperatures affect vegetative growth and that SPT couples morning temperature to growth rate. In seedlings, warm temperatures inhibit the accumulation of the SPT protein, and SPT autoregulates its own transcript abundance in conjunction with diurnal effects. Genetic data show that repression of growth by SPT is independent of GA signaling and phytochrome B, as previously shown for PIF4. Our data suggest that SPT integrates time of day and temperature signaling to control vegetative growth rate.
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Affiliation(s)
- Kate Sidaway-Lee
- Department of Biology, University of York, P.O. Box 373, York YO10 5YW, UK
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24
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Park BS, Eo HJ, Jang IC, Kang HG, Song JT, Seo HS. Ubiquitination of LHY by SINAT5 regulates flowering time and is inhibited by DET1. Biochem Biophys Res Commun 2010; 398:242-6. [PMID: 20599732 DOI: 10.1016/j.bbrc.2010.06.067] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2010] [Accepted: 06/16/2010] [Indexed: 12/21/2022]
Abstract
Ubiquitin is a small polypeptide and ubiquitination is the post-translational modification by ubiquitin protein, resulting in degradation of target proteins by the 26S proteasome complex. Here, we found that E3 ubiquitin ligase SINAT5, an Arabidopsis homologue of the Drosophila SINA RING-finger protein, interacts directly with LHY, a component of the circadian oscillator, and DET1, a negative regulator of light-regulated gene expression. We also found that SINAT5 has E3 ubiquitination activity for LHY but not for DET1. Interestingly, LHY ubiquitination by SINAT5 was inhibited by DET1. Late flowering of sinat5 mutants indicates that flowering time can be controlled by DET1 through regulation of LHY stability by SINAT5.
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Affiliation(s)
- Bong Soo Park
- Department of Plant Science, Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Republic of Korea
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25
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Koeda S, Hosokawa M, Kang BC, Yazawa S. Dramatic changes in leaf development of the native Capsicum chinense from the Seychelles at temperatures below 24 degrees C. JOURNAL OF PLANT RESEARCH 2009; 122:623-631. [PMID: 19536608 DOI: 10.1007/s10265-009-0250-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2009] [Accepted: 05/16/2009] [Indexed: 05/27/2023]
Abstract
When a pepper cultivar (Capsicum chinense cv. Seychelles-2, Sy-2) native to the Seychelles was grown in Japan, all seedlings showed seasonal developmental abnormalities such as development of abnormally shaped leaves. Other pepper cultivars grew well in all seasons while the growth of cv. Sy-2 was stunted. In this study, we first examined the effects of various changes in temperature and photoperiod on the cv. Sy-2 phenotype. The results showed that temperatures lower than 24 degrees C led to the formation of abnormal leaves. Second, morphological and anatomical analyses of cotyledons and true leaves developed at 28 and 20 degrees C were conducted. The narrower and thicker cotyledons developed at 20 degrees C had fewer palisade cells in the leaf-length direction, and more cells in the leaf-thickness direction. True leaves developed at 20 degrees C were irregularly shaped, thicker and had smaller leaf area. In addition, true leaves developed at 20 degrees C had fewer palisade cells in the leaf-length and leaf-width directions and had more cells in the leaf-thickness direction. Furthermore, abnormal periclinal cell divisions in the mesophyll and/or epidermal cell layers were observed during leaf blade development at 20 degrees C. These results suggest that the observed changes in cell proliferation and abnormal periclinal cell divisions were related, at least in part, to abnormal leaf development of cv. Sy-2 at temperatures below 24 degrees C.
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Affiliation(s)
- Sota Koeda
- Laboratory of Vegetable and Ornamental Horticulture, Department of Agronomy and Horticultural Science, Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto, 606-8502, Japan.
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26
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Wang B, Zhou X, Xu F, Gao J. Ectopic expression of a Chinese cabbage BrARGOS gene in Arabidopsis increases organ size. Transgenic Res 2009; 19:461-72. [PMID: 19789991 DOI: 10.1007/s11248-009-9324-6] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2008] [Accepted: 09/10/2009] [Indexed: 10/20/2022]
Abstract
Chinese cabbage (Brassica rapa L. ssp. pekinensis) is a common and economically important crop in Asia. Specific targets of plant breeding programs for cabbage have been improvement in yield, resistance to environment stresses, and nutrition quality by means of genetic manipulation. To obtain information on yield improvement applicable for the genetic engineering approach, we have attempted to dissect the molecular pathways that regulate organ size. We first isolated a putative homolog of ARGOS full-length cDNA from Chinese cabbage leaves, which we designated BrARGOS. At the transcription level, BrARGOS was detected in all organs tested in Chinese cabbage. To test the function of this gene, we then engineered Arabidopsis plants that would overexpress BrARGOS ectopically. The organs of the transgenic Arabidopsis plants were significantly larger than those of the control plants. This increase in size was due to enhanced cell proliferation, with no contribution from cell expansion. The molecular analysis revealed that overexpression of BrARGOS up-regulated the transcription of several genes involved in the control of organ size. These results suggest that the BrARGOS gene may function as one of the regulators of organ size in Chinese cabbage. As such, manipulation of the BrARGOS gene may significantly increase the size of Chinese cabbage organs, such as Chinese cabbage heads.
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Affiliation(s)
- Bao Wang
- Shandong Key Laboratory of Greenhouse Vegetable Biology, Institute of Vegetables, Shandong Academy of Agricultural Sciences, 250100, Jinan, Shandong, China
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27
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Davis SJ. Integrating hormones into the floral-transition pathway of Arabidopsis thaliana. PLANT, CELL & ENVIRONMENT 2009; 32:1201-10. [PMID: 19302104 DOI: 10.1111/j.1365-3040.2009.01968.x] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
The transition from vegetative to reproductive growth is a major phase change in angiosperms. In annual plants such as Arabidopsis thaliana (Arabidopsis), this change is irreversible, and as such, the regulation of its timing must be tightly controlled. Plant hormone (phytohormone) signalling is known to regulate suites of morphogenic processes in Arabidopsis a role in flowering-time control is starting to emerge as one key-controlling step. This review focuses on experimental evidence in the Arabidopsis that both classical and newly described phytohormones serve within the signal network leading to a reproductive phase transition, as both positive and repressive elements, depending on the phytohormone and growth conditions. Examples of genetic and pharmacological experiments that implicate phytohormones as components of the floral-timing syndrome will be described. I hope that this review will serve as a primer for future research on the mechanisms of action for each respective phytohormone on the floral transition in Arabidopsis, and lead to further experimentation on the crosstalk that likely bridges between them.
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Affiliation(s)
- Seth J Davis
- Max Planck Institute for Plant Breeding Research, Carl von Linne Weg 10, Cologne D-50829, Germany.
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28
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Patel D, Franklin KA. Temperature-regulation of plant architecture. PLANT SIGNALING & BEHAVIOR 2009; 4:577-9. [PMID: 19820338 PMCID: PMC2710546 DOI: 10.4161/psb.4.7.8849] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2009] [Accepted: 04/22/2009] [Indexed: 05/20/2023]
Abstract
As sessile organisms, plants have evolved great plasticity to adapt to their surrounding environment. Temperature signals regulate the timing of multiple developmental processes and have dramatic effects on plant architecture and biomass. The modulation of plant architecture by temperature is of increasing relevance with regard to crop productivity and global climate change. Unlike many other organisms, the mechanisms through which plants sense changes in ambient temperature remain elusive. Multiple studies have identified crosstalk between ambient temperature sensing, light signaling, cold acclimation and pathogen response pathways. The regulation of plant architecture by temperature appears to involve the complex integration of multiple hormone signaling networks. Gibberellin (GA), Salicylic Acid (SA) and cytokinin have been implicated in the regulation of plant growth during chilling, whilst a predominant role for auxin is observed at high temperatures. This mini-review summarizes current knowledge of plant growth regulation by temperature and crosstalk with other abiotic and biotic stress signaling pathways.
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Affiliation(s)
- Dhaval Patel
- Department of Biology, University of Leicester, Leicester, UK
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29
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Olsen KM, Slimestad R, Lea US, Brede C, Løvdal T, Ruoff P, Verheul M, Lillo C. Temperature and nitrogen effects on regulators and products of the flavonoid pathway: experimental and kinetic model studies. PLANT, CELL & ENVIRONMENT 2009; 32:286-99. [PMID: 19054348 DOI: 10.1111/j.1365-3040.2008.01920.x] [Citation(s) in RCA: 94] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
The flavonoid pathway is known to be up-regulated by different environmental stress factors. Down-regulation of the pathway is much less studied and is emphasized in the present work. Flavonoid accumulation was induced by exposing plants for 1 week to nitrogen depletion at 10 degrees C, giving high levels of anthocyanins and 3-glucoside-7-rhamnosides, 3,7-di-rhamnosides and 3-rutinoside-7-rhamnosides of kaempferol and quercetin. Flavonol accumulation as influenced by temperatures and nitrogen supply was not related to the glycosylation patterns but to the classification as quercetin and kaempferol. When nitrogen was re-supplied, transcripts for main regulators of the pathway, PAP1/GL3 and PAP2/MYB12, fell to less than 1 and 0.1% of initial values, respectively, during 24 h in the 15-30 degrees C temperature range. Anthocyanins showed a half-life of approximately 1 d, while the degradation of flavonols was much slower. Interestingly, the initial fluxes of anthocyanin and flavonol degradations were found to be temperature-independent. A kinetic model for the flavonoid pathway was constructed. In order to get the observed concentration-temperature profiles as well as the temperature compensation in the flavonoid degradation flux, the model predicts that the flavonoid pathway shows an increased temperature sensitivity at the end of the pathway, where the up-regulation by PAP/GL3 has been found to be largest.
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Affiliation(s)
- Kristine M Olsen
- University of Stavanger, Centre for Organelle Research, Faculty of Science and Technology, Stavanger, Norway
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30
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Craufurd PQ, Wheeler TR. Climate change and the flowering time of annual crops. JOURNAL OF EXPERIMENTAL BOTANY 2009; 60:2529-39. [PMID: 19505929 DOI: 10.1093/jxb/erp196] [Citation(s) in RCA: 135] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Crop production is inherently sensitive to variability in climate. Temperature is a major determinant of the rate of plant development and, under climate change, warmer temperatures that shorten development stages of determinate crops will most probably reduce the yield of a given variety. Earlier crop flowering and maturity have been observed and documented in recent decades, and these are often associated with warmer (spring) temperatures. However, farm management practices have also changed and the attribution of observed changes in phenology to climate change per se is difficult. Increases in atmospheric [CO(2)] often advance the time of flowering by a few days, but measurements in FACE (free air CO(2) enrichment) field-based experiments suggest that elevated [CO(2)] has little or no effect on the rate of development other than small advances in development associated with a warmer canopy temperature. The rate of development (inverse of the duration from sowing to flowering) is largely determined by responses to temperature and photoperiod, and the effects of temperature and of photoperiod at optimum and suboptimum temperatures can be quantified and predicted. However, responses to temperature, and more particularly photoperiod, at supraoptimal temperature are not well understood. Analysis of a comprehensive data set of time to tassel initiation in maize (Zea mays) with a wide range of photoperiods above and below the optimum suggests that photoperiod modulates the negative effects of temperature above the optimum. A simulation analysis of the effects of prescribed increases in temperature (0-6 degrees C in +1 degree C steps) and temperature variability (0% and +50%) on days to tassel initiation showed that tassel initiation occurs later, and variability was increased, as the temperature exceeds the optimum in models both with and without photoperiod sensitivity. However, the inclusion of photoperiod sensitivity above the optimum temperature resulted in a higher apparent optimum temperature and less variability in the time of tassel initiation. Given the importance of changes in plant development for crop yield under climate change, the effects of photoperiod and temperature on development rates above the optimum temperature clearly merit further research, and some of the knowledge gaps are identified herein.
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Affiliation(s)
- P Q Craufurd
- Plant Environment Laboratory, University of Reading, Cutbush Lane, Shinfield, Reading RG2 9AF, UK.
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31
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Michael TP, Mockler TC, Breton G, McEntee C, Byer A, Trout JD, Hazen SP, Shen R, Priest HD, Sullivan CM, Givan SA, Yanovsky M, Hong F, Kay SA, Chory J. Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules. PLoS Genet 2008; 4:e14. [PMID: 18248097 PMCID: PMC2222925 DOI: 10.1371/journal.pgen.0040014] [Citation(s) in RCA: 385] [Impact Index Per Article: 24.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2007] [Accepted: 12/10/2007] [Indexed: 11/18/2022] Open
Abstract
Correct daily phasing of transcription confers an adaptive advantage to almost all organisms, including higher plants. In this study, we describe a hypothesis-driven network discovery pipeline that identifies biologically relevant patterns in genome-scale data. To demonstrate its utility, we analyzed a comprehensive matrix of time courses interrogating the nuclear transcriptome of Arabidopsis thaliana plants grown under different thermocycles, photocycles, and circadian conditions. We show that 89% of Arabidopsis transcripts cycle in at least one condition and that most genes have peak expression at a particular time of day, which shifts depending on the environment. Thermocycles alone can drive at least half of all transcripts critical for synchronizing internal processes such as cell cycle and protein synthesis. We identified at least three distinct transcription modules controlling phase-specific expression, including a new midnight specific module, PBX/TBX/SBX. We validated the network discovery pipeline, as well as the midnight specific module, by demonstrating that the PBX element was sufficient to drive diurnal and circadian condition-dependent expression. Moreover, we show that the three transcription modules are conserved across Arabidopsis, poplar, and rice. These results confirm the complex interplay between thermocycles, photocycles, and the circadian clock on the daily transcription program, and provide a comprehensive view of the conserved genomic targets for a transcriptional network key to successful adaptation. As the earth rotates, environmental conditions oscillate between illuminated warm days and dark cool nights. Plants have adapted to these changes by timing physiological processes to specific times of the day or night. Light and temperature signaling and the circadian clock regulate this adaptive response. To determine the contributions of each of these factors on gene regulation, we analyzed microarray time course experiments interrogating light, temperature, and circadian conditions. We discovered that almost all Arabidopsis genes cycle in at least one condition. From a signaling perspective, this suggests that light, temperature, and circadian clock play an important role in modulating many physiological pathways. To clarify the contribution of transcriptional regulation on this process, we mined the promoters of cycling genes to identify DNA elements associated with expression at specific times of day. This confirmed the importance of several DNA motifs such as the G-box and the evening element in the regulation of gene expression by light and the circadian clock, but also facilitated the discovery of new elements linked to a novel midnight regulatory module. Identification of orthologous promoter elements in rice and poplar revealed a conserved transcriptional regulatory network that allows global adaptation to the ever-changing daily environment.
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Affiliation(s)
- Todd P Michael
- Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, California, United States of America
| | - Todd C Mockler
- Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, California, United States of America
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
- Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, United States of America
| | - Ghislain Breton
- Section of Cell and Developmental Biology, University of California San Diego, La Jolla, California, United States of America
| | - Connor McEntee
- Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, California, United States of America
| | - Amanda Byer
- Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, California, United States of America
| | - Jonathan D Trout
- Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, California, United States of America
| | - Samuel P Hazen
- Section of Cell and Developmental Biology, University of California San Diego, La Jolla, California, United States of America
| | - Rongkun Shen
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
| | - Henry D Priest
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
| | - Christopher M Sullivan
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
- Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, United States of America
| | - Scott A Givan
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
- Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, United States of America
| | - Marcelo Yanovsky
- Section of Cell and Developmental Biology, University of California San Diego, La Jolla, California, United States of America
| | - Fangxin Hong
- Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, California, United States of America
- Howard Hughes Medical Institute, The Salk Institute for Biological Studies, La Jolla, California, United States of America
| | - Steve A Kay
- Section of Cell and Developmental Biology, University of California San Diego, La Jolla, California, United States of America
| | - Joanne Chory
- Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, California, United States of America
- Howard Hughes Medical Institute, The Salk Institute for Biological Studies, La Jolla, California, United States of America
- * To whom correspondence should be addressed. E-mail:
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32
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Bessonov N, Morozova N, Volpert V. Modeling of branching patterns in plants. Bull Math Biol 2008; 70:868-93. [PMID: 18266043 DOI: 10.1007/s11538-007-9282-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2007] [Accepted: 10/03/2007] [Indexed: 12/26/2022]
Abstract
A major determinant of plant architecture is the arrangement of branches around the stem, known as phyllotaxis. However, the specific form of branching conditions is not known. Here we discuss this question and suggest a branching model which seems to be in agreement with biological observations.Recently, a number of models connected with the genetic network or molecular biology regulation of the processes of pattern formation appeared. Most of these models consider the plant hormone, auxin, transport and distribution in the apical meristem as the main factors for pattern formation and phyllotaxis. However, all these models do not take into consideration the whole plant morphogenesis, concentrating on the events in the shoot or root apex. On the other hand, other approaches for modeling phyllotaxis, where the whole plant is considered, usually are mostly phenomenological, and due to it, do not describe the details of plant growth and branching mechanism. In this work, we develop a mathematical model and study pattern formation of the whole, though simplified, plant organism where the main physiological factors of plant growth and development are taken into consideration. We model a growing plant as a system of intervals, which we will consider as branches. We assume that the number and location of the branches are not given a priori, but appear and grow according to certain rules, elucidated by the application of mathematical modeling. Four variables are included in our model: concentrations of the plant hormones auxin and cytokinin, proliferation and growth factor, and nutrients-we observe a wide variety of plant forms and study more specifically the involvement of each variable in the branching process. Analysis of the numerical simulations shows that the process of pattern formation in plants depends on the interaction of all these variables. While concentrations of auxin and cytokinin determine the appearance of a new bud, its growth is determined by the concentrations of nutrients and proliferation factors. Possible mechanisms of apical domination in the frame of our model are discussed.
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Affiliation(s)
- N Bessonov
- Institute of Mechanical Engineering Problems, 199178, Saint Petersburg, Russia
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33
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Abstract
Plants can show remarkable responses to small changes in temperature, yet one of the great unknowns in plant science is how that temperature signal is perceived. The identity of the early components of the temperature signal transduction pathway also remains a mystery. To understand the consequences of anthropogenic environmental change we will have to learn much more about the basic biology of how plants sense temperature. Recent advances show that many known plant-temperature responses share common signalling components, and suggest ways in which these might be linked to form a plant temperature signalling network.
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Affiliation(s)
- Steven Penfield
- Centre for Novel Agricultural Products, Department of Biology, University of York, PO BOX 373, York YO190 5YW, UK
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34
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Kamata N, Komeda Y. An inversion identified in acl1-1 mutant functions as an enhancer of the acl1-1 phenotype. Genes Genet Syst 2008; 83:293-300. [DOI: 10.1266/ggs.83.293] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Affiliation(s)
- Naoko Kamata
- Department of Biological Sciences, Graduate School of Science, the University of Tokyo
| | - Yoshibumi Komeda
- Department of Biological Sciences, Graduate School of Science, the University of Tokyo
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35
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Paltiel J, Amin R, Gover A, Ori N, Samach A. Novel roles for GIGANTEA revealed under environmental conditions that modify its expression in Arabidopsis and Medicago truncatula. PLANTA 2006; 224:1255-68. [PMID: 16775702 DOI: 10.1007/s00425-006-0305-1] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2006] [Accepted: 04/25/2006] [Indexed: 05/08/2023]
Abstract
GIGANTEA (GI) is a large nuclear protein which is involved in circadian-clock function, red-light signaling and photoperiodic flowering. Accumulation of GI transcript displays a strong diurnal pattern, and is under circadian-clock control, as demonstrated in several diverse species. Clock entrainment and compensation, as well as flowering time, are largely responsive to changes in the environment. We asked if part of this response is mediated through modification of GI expression. We identified a strong response of GI expression to changes in temperature and light, in both Arabidopsis and the model legume Medicago truncatula. Extreme temperatures resulted in increased GI trough levels. Light increased GI expression near dawn and the response to light appeared to be gated by the circadian clock. We provide evidence that the GI response to blue and far-red light requires CRYPTOCHROME function in Arabidopsis. Unknown roles for GI in both blue-light deetiolation and precocious flowering under warm short days were revealed. Plants seem to respond to changes in the environment partly through environmentally induced modifications of a basal clock-regulated pattern of GI transcript accumulation.
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Affiliation(s)
- Judith Paltiel
- The Robert H. Smith Institute for Plant Sciences and Genetics, Faculty of Agricultural, Food and Environmental Quality Sciences, The Hebrew University, P.O. Box 12, Rehovot, 76100, Israel
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36
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37
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Horiguchi G, Ferjani A, Fujikura U, Tsukaya H. Coordination of cell proliferation and cell expansion in the control of leaf size in Arabidopsis thaliana. JOURNAL OF PLANT RESEARCH 2006; 119:37-42. [PMID: 16284709 DOI: 10.1007/s10265-005-0232-4] [Citation(s) in RCA: 150] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2005] [Accepted: 08/31/2005] [Indexed: 05/05/2023]
Abstract
Size is an important parameter in the characterization of organ morphology and function. To understand the mechanisms that control leaf size, we previously isolated a number of Arabidopsis thaliana mutants with altered leaf size. Because leaf morphogenesis depends on determinate cell proliferation, the size of a mature leaf is controlled by variation in cell size and number. Therefore, leaf-size mutants should be classified according to the effects of the mutations on the cell number and/or size. A group of mutants represented by angustifolia3/grf-interacting factor1 and aintegumenta exhibits an intriguing cellular phenotype termed compensation: when the leaf cell number is decreased due to the mutation, the leaf cell size increases, leading to compensation in leaf area. Several lines of genetic evidence suggest that compensation is probably not a result of the uncoupling of cell division from cell growth. Rather, the evidence suggests an organ-wide mechanism that coordinates cell proliferation with cell expansion during leaf development. Our results provide a key, novel concept that explains how leaf size is controlled at the organ level.
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Affiliation(s)
- Gorou Horiguchi
- National Institute for Basic Biology/Okazaki Institute for Integrated Bioscience, Myodaiji-cho Nishigo Naka 38, Okazaki 444-8585, Japan.
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Samach A, Wigge PA. Ambient temperature perception in plants. CURRENT OPINION IN PLANT BIOLOGY 2005; 8:483-6. [PMID: 16054430 DOI: 10.1016/j.pbi.2005.07.011] [Citation(s) in RCA: 75] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2005] [Accepted: 07/15/2005] [Indexed: 05/03/2023]
Abstract
Since plants are sessile they must be able to sense and rapidly respond to changes in ambient temperature. Key aspects of plant development, including the transition to flowering and the circadian clock, have important inputs from ambient temperature. In the model system Arabidopsis thaliana, molecular candidates for mediating these roles have recently been uncovered, which will be critical for obtaining an understanding of the mechanisms involved.
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Affiliation(s)
- Alon Samach
- The Robert H Smith Institute for Plant Sciences and Genetics in Agriculture, Faculty of Agriculture, The Hebrew University of Jerusalem, P.O. Box 12, Rehovot 76100, Israel
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Teper-Bamnolker P, Samach A. The flowering integrator FT regulates SEPALLATA3 and FRUITFULL accumulation in Arabidopsis leaves. THE PLANT CELL 2005; 17:2661-75. [PMID: 16155177 PMCID: PMC1242264 DOI: 10.1105/tpc.105.035766] [Citation(s) in RCA: 160] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
The transition to flowering involves major changes in the shoot apical meristem and in the fate of existing leaf primordia. Transcripts of the Arabidopsis thaliana flowering-promoting gene FLOWERING LOCUS T (FT) are present in leaf tissue but can also promote flowering when artificially introduced into the meristem. FT may normally act in the leaf and/or the meristem, initiating or constituting a mobile flower-promoting signal. We studied FT-dependent events in the rosette leaf, some of which might precede or mimic events in the meristem and its primordia. We show FT-dependent transcript accumulation of the MADS box transcription factors FRUITFULL (FUL) and SEPALLATA3 (SEP3) in leaves. Abnormally high levels of FT further increase the expression of these genes, leading to morphological changes in the leaves. Loss of the flowering-time gene FD, as well as environmental conditions that delay flowering, reduce FT's effect on leaves via reduced activation of its targets. FUL, SEP3, and APETALA1 accumulation in the meristem is associated with and contributes to the transition to flowering. We propose that FT functions through partner-dependent transcriptional activation of these and as-yet-unknown genes and that this occurs at several sites. Organ fate may depend on both degree of activation and the developmental stage reached by the organ before activation occurs.
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Affiliation(s)
- Paula Teper-Bamnolker
- Robert H. Smith Institute for Plant Sciences and Genetics in Agriculture, Faculty of Agricultural, Food and Environmental Quality Sciences, Hebrew University of Jerusalem, Rehovot 76100, Israel
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Bernier G, Périlleux C. A physiological overview of the genetics of flowering time control. PLANT BIOTECHNOLOGY JOURNAL 2005; 3:3-16. [PMID: 17168895 DOI: 10.1111/j.1467-7652.2004.00114.x] [Citation(s) in RCA: 88] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Physiological studies on flowering time control have shown that plants integrate several environmental signals. Predictable factors, such as day length and vernalization, are regarded as 'primary', but clearly interfere with, or can even be substituted by, less predictable factors. All plant parts participate in the sensing of these interacting factors. In the case of floral induction by photoperiod, long-distance signalling is known to occur between the leaves and the shoot apical meristem (SAM) via the phloem. In the long-day plant, Sinapis alba, this long-distance signalling has also been shown to involve the root system and to include sucrose, nitrate, glutamine and cytokinins, but not gibberellins. In Arabidopsis thaliana, a number of genetic pathways controlling flowering time have been identified. Models now extend beyond 'primary' controlling factors and show an ever-increasing number of cross-talks between pathways triggered or influenced by various environmental factors and hormones (mainly gibberellins). Most of the genes involved are preferentially expressed in meristems (the SAM and the root tip), but, surprisingly, only a few are expressed preferentially or exclusively in leaves. However, long-distance signalling from leaves to SAM has been shown to occur in Arabidopsis during the induction of flowering by long days. In this review, we propose a model integrating physiological data and genes activated by the photoperiodic pathway controlling flowering time in early-flowering accessions of Arabidopsis. This model involves metabolites, hormones and gene products interacting as long- or short-distance signalling molecules.
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Affiliation(s)
- Georges Bernier
- Laboratory of Plant Physiology, Department of Life Sciences, University of Liège, B22 Sart Tilman, B4000 Liège, Belgium.
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