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Wamhoff D, Gündel A, Wagner S, Ortleb S, Borisjuk L, Winkelmann T. Anatomical limitations in adventitious root formation revealed by magnetic resonance imaging, infrared spectroscopy, and histology of rose genotypes with contrasting rooting phenotypes. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:4784-4801. [PMID: 38606898 PMCID: PMC11350080 DOI: 10.1093/jxb/erae158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Accepted: 04/11/2024] [Indexed: 04/13/2024]
Abstract
Adventitious root (AR) formation is one of the most important developmental processes in vegetative propagation. Although genotypic differences in rose rooting ability are well known, the causal factors are not well understood. The rooting of two contrasting genotypes, 'Herzogin Friederike' and 'Mariatheresia', was compared following a multiscale approach. Using magnetic resonance imaging, we non-invasively monitored the inner structure of stem cuttings during initiation and progression of AR formation for the first time. Spatially resolved Fourier-transform infrared spectroscopy characterized the chemical composition of the tissues involved in AR formation. The results were validated through light microscopy and complemented by immunolabelling. The outcome demonstrated similarity of both genotypes in root primordia formation, which did not result in root protrusion through the shoot cortex in the difficult-to-root genotype 'Mariatheresia'. The biochemical composition of the contrasting genotypes highlighted main differences in cell wall-associated components. Further spectroscopic analysis of 15 contrasting rose genotypes confirmed the biochemical differences between easy- and difficult-to-root groups. Collectively, our data indicate that it is not the lack of root primordia limiting AR formation in these rose genotypes, but the firmness of the outer stem tissue and/or cell wall modifications that pose a mechanical barrier and prevent root extension and protrusion.
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Affiliation(s)
- David Wamhoff
- Institute of Horticultural Production Systems, Section Woody Plant and Propagation Physiology, Leibniz Universität Hannover, Hannover, Germany
| | - André Gündel
- Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland-Gatersleben, Germany
- Stockholm University, Department of Ecology, Environment and Plant Sciences, Svante Arrhenius Väg 21 A Frescati Backe Stockholm SE-106 91, Sweden
| | - Steffen Wagner
- Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland-Gatersleben, Germany
| | - Stefan Ortleb
- Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland-Gatersleben, Germany
| | - Ljudmilla Borisjuk
- Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466 Seeland-Gatersleben, Germany
| | - Traud Winkelmann
- Institute of Horticultural Production Systems, Section Woody Plant and Propagation Physiology, Leibniz Universität Hannover, Hannover, Germany
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Nguyen DT, Zavadil Kokáš F, Gonin M, Lavarenne J, Colin M, Gantet P, Bergougnoux V. Transcriptional changes during crown-root development and emergence in barley (Hordeum vulgare L.). BMC PLANT BIOLOGY 2024; 24:438. [PMID: 38778283 PMCID: PMC11110440 DOI: 10.1186/s12870-024-05160-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Accepted: 05/16/2024] [Indexed: 05/25/2024]
Abstract
BACKGROUND Roots play an important role during plant growth and development, ensuring water and nutrient uptake. Understanding the mechanisms regulating their initiation and development opens doors towards root system architecture engineering. RESULTS Here, we investigated by RNA-seq analysis the changes in gene expression in the barley stem base of 1 day-after-germination (DAG) and 10DAG seedlings when crown roots are formed. We identified 2,333 genes whose expression was lower in the stem base of 10DAG seedlings compared to 1DAG seedlings. Those genes were mostly related to basal cellular activity such as cell cycle organization, protein biosynthesis, chromatin organization, cytoskeleton organization or nucleotide metabolism. In opposite, 2,932 genes showed up-regulation in the stem base of 10DAG seedlings compared to 1DAG seedlings, and their function was related to phytohormone action, solute transport, redox homeostasis, protein modification, secondary metabolism. Our results highlighted genes that are likely involved in the different steps of crown root formation from initiation to primordia differentiation and emergence, and revealed the activation of different hormonal pathways during this process. CONCLUSIONS This whole transcriptomic study is the first study aiming at understanding the molecular mechanisms controlling crown root development in barley. The results shed light on crown root emergence that is likely associated with a strong cell wall modification, death of the cells covering the crown root primordium, and the production of defense molecules that might prevent pathogen infection at the site of root emergence.
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Affiliation(s)
- Dieu Thu Nguyen
- Czech Advanced Technology and Research Institute, Palacký University Olomouc, Olomouc, Czechia
- Department of Biochemistry, Faculty of Science, Palacký University Olomouc, Olomouc, Czechia
| | - Filip Zavadil Kokáš
- Czech Advanced Technology and Research Institute, Palacký University Olomouc, Olomouc, Czechia
- Present address: Masaryk Memorial Cancer Institute, Brno, Czechia
| | - Mathieu Gonin
- UMR DIADE, Université de Montpellier, IRD, CIRAD, Montpellier, France
| | - Jérémy Lavarenne
- UMR DIADE, Université de Montpellier, IRD, CIRAD, Montpellier, France
| | - Myriam Colin
- UMR DIADE, Université de Montpellier, IRD, CIRAD, Montpellier, France
| | - Pascal Gantet
- Czech Advanced Technology and Research Institute, Palacký University Olomouc, Olomouc, Czechia
- UMR DIADE, Université de Montpellier, IRD, CIRAD, Montpellier, France
| | - Véronique Bergougnoux
- Czech Advanced Technology and Research Institute, Palacký University Olomouc, Olomouc, Czechia.
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Xu Q, Wu M, Zhang L, Chen X, Zhou M, Jiang B, Jia Y, Yong X, Tang S, Mou L, Jia Z, Shabala S, Pan Y. Unraveling Key Factors for Hypoxia Tolerance in Contrasting Varieties of Cotton Rose by Comparative Morpho-physiological and Transcriptome Analysis. PHYSIOLOGIA PLANTARUM 2024; 176:e14317. [PMID: 38686568 DOI: 10.1111/ppl.14317] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2023] [Accepted: 04/10/2024] [Indexed: 05/02/2024]
Abstract
The cotton rose (Hibiscus mutabilis) is a plant species commonly found in tropical and subtropical regions. It is remarkably resilient to waterlogging stress; however, the underlying mechanism behind this trait is yet unknown. This study used hypoxia-tolerant "Danbanhong" (DBH) and more hypoxia-sensitive "Yurui" (YR) genotypes and compared their morpho-physiological and transcriptional responses to hypoxic conditions. Notably, DBH had a higher number of adventitious roots (20.3) compared to YR (10.0), with longer adventitious roots in DBH (18.3 cm) than in YR (11.2 cm). Furthermore, the formation of aerenchyma was 3-fold greater in DBH compared to YR. Transcriptomic analysis revealed that DBH had more rapid transcriptional responses to hypoxia than YR. Identification of a greater number of differentially expressed genes (DEGs) for aerenchyma, adventitious root formation and development, and energy metabolism in DBH supported that DBH had better morphological and transcriptional adaptation than YR. DEG functional enrichment analysis indicated the involvement of variety-specific biological processes in adaption to hypoxia. Plant hormone signaling transduction, MAPK signaling pathway and carbon metabolism played more pronounced roles in DBH, whereas the ribosome genes were specifically induced in YR. These results show that effective multilevel coordination of adventitious root development and aerenchyma, in conjunction with plant hormone signaling and carbon metabolism, is required for increased hypoxia tolerance. This study provides new insights into the characterization of morpho-physiological and transcriptional responses to hypoxia in H. mutabilis, shedding light on the molecular mechanisms of its adaptation to hypoxic environments.
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Affiliation(s)
- Qian Xu
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
- School of Biological Sciences, University of Western Australia, Crawley, WA, Australia
| | - Mengxi Wu
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Lu Zhang
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Xi Chen
- School of Biological Sciences, University of Western Australia, Crawley, WA, Australia
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan, China
| | - Mei Zhou
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Beibei Jiang
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Yin Jia
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Xue Yong
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | | | - Lisha Mou
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Zhishi Jia
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Sergey Shabala
- School of Biological Sciences, University of Western Australia, Crawley, WA, Australia
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan, China
| | - Yuanzhi Pan
- College of Forestry, Sichuan Agricultural University, Chengdu, Sichuan, China
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Mishra P, Roggen A, Ljung K, Albani MC, Vayssières A. Adventitious rooting in response to long-term cold: a possible mechanism of clonal growth in alpine perennials. FRONTIERS IN PLANT SCIENCE 2024; 15:1352830. [PMID: 38693930 PMCID: PMC11062184 DOI: 10.3389/fpls.2024.1352830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/09/2023] [Accepted: 03/22/2024] [Indexed: 05/03/2024]
Abstract
Arctic alpine species experience extended periods of cold and unpredictable conditions during flowering. Thus, often, alpine plants use both sexual and asexual means of reproduction to maximize fitness and ensure reproductive success. We used the arctic alpine perennial Arabis alpina to explore the role of prolonged cold exposure on adventitious rooting. We exposed plants to 4°C for different durations and scored the presence of adventitious roots on the main stem and axillary branches. Our physiological studies demonstrated the presence of adventitious roots after 21 weeks at 4°C saturating the effect of cold on this process. Notably, adventitious roots on the main stem developing in specific internodes allowed us to identify the gene regulatory network involved in the formation of adventitious roots in cold using transcriptomics. These data and histological studies indicated that adventitious roots in A. alpina stems initiate during cold exposure and emerge after plants experience growth promoting conditions. While the initiation of adventitious root was not associated with changes of DR5 auxin response and free endogenous auxin level in the stems, the emergence of the adventitious root primordia was. Using the transcriptomic data, we discerned the sequential hormone responses occurring in various stages of adventitious root formation and identified supplementary pathways putatively involved in adventitious root emergence, such as glucosinolate metabolism. Together, our results highlight the role of low temperature during clonal growth in alpine plants and provide insights on the molecular mechanisms involved at distinct stages of adventitious rooting.
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Affiliation(s)
- Priyanka Mishra
- Institute for Plant Sciences, University of Cologne, Cologne, Germany
- Cluster of Excellence on Plant Sciences, “SMART Plants for Tomorrow’s Needs,” Heinrich-Heine University Düsseldorf, Düsseldorf, Germany
- Max Planck Institute for Plant Breeding Research, Cologne, Germany
- Department of Botany, Faculty of Science, University of Allahabad, Prayagraj, India
| | - Adrian Roggen
- Institute for Plant Sciences, University of Cologne, Cologne, Germany
- Cluster of Excellence on Plant Sciences, “SMART Plants for Tomorrow’s Needs,” Heinrich-Heine University Düsseldorf, Düsseldorf, Germany
- Max Planck Institute for Plant Breeding Research, Cologne, Germany
| | - Karin Ljung
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Maria C. Albani
- Institute for Plant Sciences, University of Cologne, Cologne, Germany
- Cluster of Excellence on Plant Sciences, “SMART Plants for Tomorrow’s Needs,” Heinrich-Heine University Düsseldorf, Düsseldorf, Germany
- Max Planck Institute for Plant Breeding Research, Cologne, Germany
- Rijk Zwaan, De Lier, Netherlands
| | - Alice Vayssières
- Institute for Plant Sciences, University of Cologne, Cologne, Germany
- Cluster of Excellence on Plant Sciences, “SMART Plants for Tomorrow’s Needs,” Heinrich-Heine University Düsseldorf, Düsseldorf, Germany
- Max Planck Institute for Plant Breeding Research, Cologne, Germany
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Versailles, France
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Shen B, Li W, Zheng Y, Zhou X, Zhang Y, Qu M, Wang Y, Yuan Y, Pang K, Feng Y, Wu J, Zeng B. Morphological and molecular response mechanisms of the root system of different Hemarthria compressa species to submergence stress. FRONTIERS IN PLANT SCIENCE 2024; 15:1342814. [PMID: 38638357 PMCID: PMC11024365 DOI: 10.3389/fpls.2024.1342814] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Accepted: 03/21/2024] [Indexed: 04/20/2024]
Abstract
Introduction The severity of flood disasters is increasing due to climate change, resulting in a significant reduction in the yield and quality of forage crops worldwide. This poses a serious threat to the development of agriculture and livestock. Hemarthria compressa is an important high-quality forage grass in southern China. In recent years, frequent flooding has caused varying degrees of impacts on H. compressa and their ecological environment. Methods In this study, we evaluated differences in flooding tolerance between the root systems of the experimental materials GY (Guang Yi, flood-tolerant) and N1291 (N201801291, flood-sensitive). We measured their morphological indexes after 7 d, 14 d, and 21 d of submergence stress and sequenced their transcriptomes at 8 h and 24 h, with 0 h as the control. Results During submergence stress, the number of adventitious roots and root length of both GY and N1291 tended to increase, but the overall growth of GY was significantly higher than that of N1291. RNA-seq analysis revealed that 6046 and 7493 DEGs were identified in GY-8h and GY-24h, respectively, and 9198 and 4236 DEGs in N1291-8h and N1291-24h, respectively, compared with the control. The GO and KEGG enrichment analysis results indicated the GO terms mainly enriched among the DEGs were oxidation-reduction process, obsolete peroxidase reaction, and other antioxidant-related terms. The KEGG pathways that were most significantly enriched were phenylpropanoid biosynthesis, plant hormone signal transduction etc. The genes of transcription factor families, such as C2H2, bHLH and bZIP, were highly expressed in the H. compressa after submergence, which might be closely related to the submergence adaptive response mechanisms of H. compressa. Discussion This study provides basic data for analyzing the molecular and morphological mechanisms of H. compressa in response to submergence stress, and also provides theoretical support for the subsequent improvement of submergence tolerance traits of H. compressa.
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Affiliation(s)
- Bingna Shen
- College of Animal Science and Technology, Southwest University, Chongqing, China
| | - Wenwen Li
- College of Animal Science and Technology, Southwest University, Chongqing, China
| | - Yuqian Zheng
- College of Animal Science and Technology, Southwest University, Chongqing, China
| | - Xiaoli Zhou
- College of Animal Science and Technology, Southwest University, Chongqing, China
| | - Yinuo Zhang
- College of Grassland Agriculture, Northwest Agriculture and Forestry University, Shanxi, China
| | - Minghao Qu
- College of Animal Science and Technology, Southwest University, Chongqing, China
- Institute of Prataculture, Chongqing Academy of Animal Science, Chongqing, China
| | - Yinchen Wang
- Institute of Animal Husbandry and Veterinary Medicine, Guizhou Provincial Academy of Agricultural Sciences, Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou, China
| | - Yang Yuan
- Institute of Animal Husbandry and Veterinary Medicine, Guizhou Provincial Academy of Agricultural Sciences, Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou, China
| | - Kaiyue Pang
- College of Animal Science and Technology, Southwest University, Chongqing, China
| | - Yanlong Feng
- College of Animal Science and Technology, Southwest University, Chongqing, China
| | - Jiahai Wu
- Institute of Animal Husbandry and Veterinary Medicine, Guizhou Provincial Academy of Agricultural Sciences, Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou, China
| | - Bing Zeng
- College of Animal Science and Technology, Southwest University, Chongqing, China
- College of Animal Science and Technology, Southwest University, Chongqing University Herbivore Engineering Research Center, Chongqing, China
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Quan L, Shiting L, Chen Z, Yuyan H, Minrong Z, Shuyan L, Libao C. NnWOX1-1, NnWOX4-3, and NnWOX5-1 of lotus (Nelumbo nucifera Gaertn)promote root formation and enhance stress tolerance in transgenic Arabidopsis thaliana. BMC Genomics 2023; 24:719. [PMID: 38017402 PMCID: PMC10683310 DOI: 10.1186/s12864-023-09772-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Accepted: 10/28/2023] [Indexed: 11/30/2023] Open
Abstract
BACKGROUND Adventitious roots (ARs) represent an important organ system for water and nutrient uptake in lotus plants because of degeneration of the principal root. The WUSCHEL-related homeobox (WOX) gene regulates plant development and growth by affecting the expression of several other genes. In this study, three WOX genes, NnWOX1-1, NnWOX4-3, and NnWOX5-1, were isolated and their functions were assessed in Arabidopsis plants. RESULTS The full lengths of NnWOX1-1, NnWOX4-3, and NnWOX5-1 were 1038, 645, and 558 bp, encoding 362, 214, and 185 amino acid residues, respectively. Phylogenetic analysis classified NnWOX1-1 and NnWOX4-3 encoding proteins into one group, and NnWOX5-1 and MnWOX5 encoding proteins exhibited strong genetic relationships. The three genes were induced by sucrose and indoleacetic acid (IAA) and exhibited organ-specific expression characteristics. In addition to improving root growth and salt tolerance, NnWOX1-1 and NnWOX4-3 promoted stem development in transgenic Arabidopsis plants. A total of 751, 594, and 541 genes, including 19, 19, and 13 respective genes related to ethylene and IAA metabolism and responses, were enhanced in NnWOX1-1, NnWOX4-3, and NnWOX5-1 transgenic plants, respectively. Further analysis showed that ethylene production rates in transgenic plants increased, whereas IAA, peroxidase, and lignin content did not significantly change. Exogenous application of ethephon on lotus seedlings promoted AR formation and dramatically increased the fresh and dry weights of the plants. CONCLUSIONS NnWOX1-1, NnWOX4-3, and NnWOX5-1 influence root formation, stem development, and stress adaptation in transgenic Arabidopsis plants by affecting the transcription of multiple genes. Among these, changes in gene expression involving ethylene metabolism and responses likely critically affect the development of Arabidopsis plants. In addition, ethylene may represent an important factor affecting AR formation in lotus seedlings.
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Affiliation(s)
- Liu Quan
- College of Horticulture and landscape Architechture, Yangzhou University, Jiangsu, People's Republic of China
| | - Liang Shiting
- College of Horticulture and landscape Architechture, Yangzhou University, Jiangsu, People's Republic of China
| | - Zhao Chen
- College of Horticulture and landscape Architechture, Yangzhou University, Jiangsu, People's Republic of China
| | - Han Yuyan
- College of Horticulture and landscape Architechture, Yangzhou University, Jiangsu, People's Republic of China
| | - Zhao Minrong
- College of Horticulture and landscape Architechture, Yangzhou University, Jiangsu, People's Republic of China
| | - Li Shuyan
- College of Guangling, Yangzhou University, Jiangsu, People's Republic of China.
| | - Cheng Libao
- College of Horticulture and landscape Architechture, Yangzhou University, Jiangsu, People's Republic of China.
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Nguyen HT, Cheaib M, Fournel M, Rios M, Gantet P, Laplaze L, Guyomarc’h S, Riemann M, Heitz T, Petitot AS, Champion A. Genetic analysis of the rice jasmonate receptors reveals specialized functions for OsCOI2. PLoS One 2023; 18:e0291385. [PMID: 37682975 PMCID: PMC10490909 DOI: 10.1371/journal.pone.0291385] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2023] [Accepted: 08/25/2023] [Indexed: 09/10/2023] Open
Abstract
COI1-mediated perception of jasmonate is critical for plant development and responses to environmental stresses. Monocots such as rice have two groups of COI genes due to gene duplication: OsCOI1a and OsCOI1b that are functionally equivalent to the dicotyledons COI1 and OsCOI2 whose function remains unclear. In order to assess the function of OsCOI2 and its functional redundancy with COI1 genes, we developed a series of rice mutants in the 3 genes OsCOI1a, OsCOI1b and OsCOI2 by CRISPR Cas9-mediated editing and characterized their phenotype and responses to jasmonate. Characterization of OsCOI2 uncovered its important roles in root, leaf and flower development. In particular, we show that crown root growth inhibition by jasmonate relies on OsCOI2 and not on OsCOI1a nor on OsCOI1b, revealing a major function for the non-canonical OsCOI2 in jasmonate-dependent control of rice root growth. Collectively, these results point to a specialized function of OsCOI2 in the regulation of plant development in rice and indicate that sub-functionalisation of jasmonate receptors has occurred in the monocot phylum.
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Affiliation(s)
| | | | - Marie Fournel
- DIADE, IRD, Univ Montpellier, Montpellier, France
- IBMP, CNRS, Univ Strasbourg, Strasbourg, France
| | - Maelle Rios
- DIADE, IRD, Univ Montpellier, Montpellier, France
| | | | | | | | - Michael Riemann
- Karlsruhe Institute of Technology, Botanical Institute, Karlsruhe, Germany
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Bless Y, Ndlovu L, Gcanga E, Niekerk LA, Nkomo M, Bakare O, Mulaudzi T, Klein A, Gokul A, Keyster M. Methylglyoxal improves zirconium stress tolerance in Raphanus sativus seedling shoots by restricting zirconium uptake, reducing oxidative damage, and upregulating glyoxalase I. Sci Rep 2023; 13:13618. [PMID: 37604852 PMCID: PMC10442447 DOI: 10.1038/s41598-023-40788-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Accepted: 08/16/2023] [Indexed: 08/23/2023] Open
Abstract
Raphanus sativus also known as radish is a member of the Brassicaceae family which is mainly cultivated for human and animal consumption. R. sativus growth and development is negatively affected by heavy metal stress. The metal zirconium (Zr) have toxic effects on plants and tolerance to the metal could be regulated by known signaling molecules such as methylglyoxal (MG). Therefore, in this study we investigated whether the application of the signaling molecule MG could improve the Zr tolerance of R. sativus at the seedling stage. We measured the following: seed germination, dry weight, cotyledon abscission (%), cell viability, chlorophyll content, malondialdehyde (MDA) content, conjugated diene (CD) content, hydrogen peroxide (H2O2) content, superoxide (O2•-) content, MG content, hydroxyl radical (·OH) concentration, ascorbate peroxidase (APX) activity, superoxide dismutase (SOD) activity, glyoxalase I (Gly I) activity, Zr content and translocation factor. Under Zr stress, exogenous MG increased the seed germination percentage, shoot dry weight, cotyledon abscission, cell viability and chlorophyll content. Exogenous MG also led to a decrease in MDA, CD, H2O2, O2•-, MG and ·OH, under Zr stress in the shoots. Furthermore, MG application led to an increase in the enzymatic activities of APX, SOD and Gly I as well as in the complete blocking of cotyledon abscission under Zr stress. MG treatment decreased the uptake of Zr in the roots and shoots. Zr treatment decreased the translocation factor of the Zr from roots to shoots and MG treatment decreased the translocation factor of Zr even more significantly compared to the Zr only treatment. Our results indicate that MG treatment can improve R. sativus seedling growth under Zr stress through the activation of antioxidant enzymes and Gly I through reactive oxygen species and MG signaling, inhibiting cotyledon abscission through H2O2 signaling and immobilizing Zr translocation.
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Affiliation(s)
- Yoneal Bless
- Environmental Biotechnology Laboratory, Department of Biotechnology, University of the Western Cape, Bellville, 7535, South Africa
| | - Linda Ndlovu
- Environmental Biotechnology Laboratory, Department of Biotechnology, University of the Western Cape, Bellville, 7535, South Africa
| | - Esihle Gcanga
- Environmental Biotechnology Laboratory, Department of Biotechnology, University of the Western Cape, Bellville, 7535, South Africa
| | - Lee-Ann Niekerk
- Environmental Biotechnology Laboratory, Department of Biotechnology, University of the Western Cape, Bellville, 7535, South Africa
| | - Mbukeni Nkomo
- Plant Omics Laboratory, Department of Biotechnology, University of the Western Cape, Bellville, 7535, South Africa
| | - Olalekan Bakare
- Environmental Biotechnology Laboratory, Department of Biotechnology, University of the Western Cape, Bellville, 7535, South Africa
| | - Takalani Mulaudzi
- Department of Biotechnology, Life Science Building, University of the Western Cape, Bellville, 7535, South Africa
| | - Ashwil Klein
- Plant Omics Laboratory, Department of Biotechnology, University of the Western Cape, Bellville, 7535, South Africa
| | - Arun Gokul
- Environmental Biotechnology Laboratory, Department of Biotechnology, University of the Western Cape, Bellville, 7535, South Africa
- Department of Plant Sciences, Qwaqwa Campus, University of the Free State, Phuthadithjaba, 9866, South Africa
| | - Marshall Keyster
- Environmental Biotechnology Laboratory, Department of Biotechnology, University of the Western Cape, Bellville, 7535, South Africa.
- DST-NRF Centre of Excellence in Food Security, University of the Western Cape, Bellville, 7530, South Africa.
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Jiménez JDLC, Pedersen O. Mitigation of Greenhouse Gas Emissions from Rice via Manipulation of Key Root Traits. RICE (NEW YORK, N.Y.) 2023; 16:24. [PMID: 37160782 PMCID: PMC10169991 DOI: 10.1186/s12284-023-00638-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Accepted: 04/18/2023] [Indexed: 05/11/2023]
Abstract
Rice production worldwide represents a major anthropogenic source of greenhouse gas emissions. Nitrogen fertilization and irrigation practices have been fundamental to achieve optimal rice yields, but these agricultural practices together with by-products from plants and microorganisms, facilitate the production, accumulation and venting of vast amounts of CO2, CH4 and N2O. We propose that the development of elite rice varieties should target root traits enabling an effective internal O2 diffusion, via enlarged aerenchyma channels. Moreover, gas tight barriers impeding radial O2 loss in basal parts of the roots will increase O2 diffusion to the root apex where molecular O2 diffuses into the rhizosphere. These developments result in plants with roots penetrating deeper into the flooded anoxic soils, producing higher volumes of oxic conditions in the interface between roots and rhizosphere. Molecular O2 in these zones promotes CH4 oxidation into CO2 by methanotrophs and nitrification (conversion of NH4+ into NO3-), reducing greenhouse gas production and at the same time improving plant nutrition. Moreover, roots with tight barriers to radial O2 loss will have restricted diffusional entry of CH4 produced in the anoxic parts of the rhizosphere and therefore plant-mediated diffusion will be reduced. In this review, we describe how the exploitation of these key root traits in rice can potentially reduce greenhouse gas emissions from paddy fields.
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Affiliation(s)
- Juan de la Cruz Jiménez
- Department of Biology, University of Copenhagen, Universitetsparken 4, 3rd floor, Copenhagen, 2100, Denmark.
| | - Ole Pedersen
- Department of Biology, University of Copenhagen, Universitetsparken 4, 3rd floor, Copenhagen, 2100, Denmark.
- School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia.
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10
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Xu X, Liu M, Hu Q, Yan W, Pan J, Yan Y, Chen X. A CsEIL3-CsARN6.1 module promotes waterlogging-triggered adventitious root formation in cucumber by activating the expression of CsPrx5. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023; 114:824-835. [PMID: 36871136 DOI: 10.1111/tpj.16172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Revised: 02/06/2023] [Accepted: 02/27/2023] [Indexed: 05/27/2023]
Abstract
The formation of adventitious roots (ARs) derived from hypocotyl is the most important morphological adaptation to waterlogging stress in Cucumis sativus (cucumber). Our previous study showed that cucumbers with the gene CsARN6.1, encoding an AAA ATPase domain-containing protein, were more tolerant to waterlogging through increased AR formation. However, the apparent function of CsARN6.1 remained unknown. Here, we showed that the CsARN6.1 signal was predominantly observed throughout the cambium of hypocotyls, where de novo AR primordia are formed upon waterlogging treatment. The silencing of CsARN6.1 expression by virus-induced gene silencing and CRISPR/Cas9 technologies adversely affects the formation of ARs under conditions of waterlogging. Waterlogging treatment significantly induced ethylene production, thus upregulating CsEIL3 expression, which encodes a putative transcription factor involved in ethylene signaling. Furthermore, yeast one-hybrid, electrophoretic mobility assay and transient expression analyses showed that CsEIL3 binds directly to the CsARN6.1 promoter to initiate its expression. CsARN6.1 was found to interact with CsPrx5, a waterlogging-responsive class-III peroxidase that enhanced H2 O2 production and increased AR formation. These data provide insights into understanding the molecular mechanisms of AAA ATPase domain-containing protein and uncover a molecular mechanism that links ethylene signaling with the formation of ARs triggered by waterlogging.
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Affiliation(s)
- Xuewen Xu
- School of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou, Jiangsu, 225009, China
- Joint International Research Laboratory of Agriculture and Agri-Product Safety, Yangzhou University, Yangzhou, 225009, China
| | - Mengyao Liu
- School of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou, Jiangsu, 225009, China
| | - Qiming Hu
- School of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou, Jiangsu, 225009, China
| | - Wenjing Yan
- School of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou, Jiangsu, 225009, China
| | - Jiawei Pan
- School of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou, Jiangsu, 225009, China
| | - Yongming Yan
- School of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou, Jiangsu, 225009, China
| | - Xuehao Chen
- School of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou, Jiangsu, 225009, China
- Joint International Research Laboratory of Agriculture and Agri-Product Safety, Yangzhou University, Yangzhou, 225009, China
- Jiangsu Key Laboratory for Horticultural Crop Genetic Improvement, Institute of Vegetable Crops, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, 210014, China
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11
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Lu Y, Fricke W. Salt Stress-Regulation of Root Water Uptake in a Whole-Plant and Diurnal Context. Int J Mol Sci 2023; 24:ijms24098070. [PMID: 37175779 PMCID: PMC10179082 DOI: 10.3390/ijms24098070] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Revised: 04/25/2023] [Accepted: 04/27/2023] [Indexed: 05/15/2023] Open
Abstract
This review focuses on the regulation of root water uptake in plants which are exposed to salt stress. Root water uptake is not considered in isolation but is viewed in the context of other potential tolerance mechanisms of plants-tolerance mechanisms which relate to water relations and gas exchange. Plants spend between one third and half of their lives in the dark, and salt stress does not stop with sunset, nor does it start with sunrise. Surprisingly, how plants deal with salt stress during the dark has received hardly any attention, yet any growth response to salt stress over days, weeks, months and years is the integrative result of how plants perform during numerous, consecutive day/night cycles. As we will show, dealing with salt stress during the night is a prerequisite to coping with salt stress during the day. We hope to highlight with this review not so much what we know, but what we do not know; and this relates often to some rather basic questions.
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Affiliation(s)
- Yingying Lu
- School of Biology and Environmental Science, University College Dublin (UCD), Belfield, D04 N2E5 Dublin, Ireland
| | - Wieland Fricke
- School of Biology and Environmental Science, University College Dublin (UCD), Belfield, D04 N2E5 Dublin, Ireland
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12
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Tanaka W, Yamauchi T, Tsuda K. Genetic basis controlling rice plant architecture and its modification for breeding. BREEDING SCIENCE 2023; 73:3-45. [PMID: 37168811 PMCID: PMC10165344 DOI: 10.1270/jsbbs.22088] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Accepted: 12/25/2022] [Indexed: 05/13/2023]
Abstract
The shoot and root system architectures are fundamental for crop productivity. During the history of artificial selection of domestication and post-domestication breeding, the architecture of rice has significantly changed from its wild ancestor to fulfil requirements in agriculture. We review the recent studies on developmental biology in rice by focusing on components determining rice plant architecture; shoot meristems, leaves, tillers, stems, inflorescences and roots. We also highlight natural variations that affected these structures and were utilized in cultivars. Importantly, many core regulators identified from developmental mutants have been utilized in breeding as weak alleles moderately affecting these architectures. Given a surge of functional genomics and genome editing, the genetic mechanisms underlying the rice plant architecture discussed here will provide a theoretical basis to push breeding further forward not only in rice but also in other crops and their wild relatives.
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Affiliation(s)
- Wakana Tanaka
- Graduate School of Integrated Sciences for Life, Hiroshima University, 1-4-4 Kagamiyama, Higashi-Hiroshima, Hiroshima 739-8528, Japan
| | - Takaki Yamauchi
- Bioscience and Biotechnology Center, Nagoya University, Furo-cho, Chikusa, Nagoya, Aichi 464-8601, Japan
| | - Katsutoshi Tsuda
- National Institute of Genetics, 1111 Yata, Mishima, Shizuoka 411-8540, Japan
- Department of Genetics, School of Life Science, Graduate University for Advanced Studies, 1111 Yata, Mishima, Shizuoka 411-8540, Japan
- Corresponding author (e-mail: )
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13
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Langan P, Bernád V, Walsh J, Henchy J, Khodaeiaminjan M, Mangina E, Negrão S. Phenotyping for waterlogging tolerance in crops: current trends and future prospects. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:5149-5169. [PMID: 35642593 PMCID: PMC9440438 DOI: 10.1093/jxb/erac243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/04/2021] [Accepted: 05/30/2022] [Indexed: 06/15/2023]
Abstract
Yield losses to waterlogging are expected to become an increasingly costly and frequent issue in some regions of the world. Despite the extensive work that has been carried out examining the molecular and physiological responses to waterlogging, phenotyping for waterlogging tolerance has proven difficult. This difficulty is largely due to the high variability of waterlogging conditions such as duration, temperature, soil type, and growth stage of the crop. In this review, we highlight use of phenotyping to assess and improve waterlogging tolerance in temperate crop species. We start by outlining the experimental methods that have been utilized to impose waterlogging stress, ranging from highly controlled conditions of hydroponic systems to large-scale screenings in the field. We also describe the phenotyping traits used to assess tolerance ranging from survival rates and visual scoring to precise photosynthetic measurements. Finally, we present an overview of the challenges faced in attempting to improve waterlogging tolerance, the trade-offs associated with phenotyping in controlled conditions, limitations of classic phenotyping methods, and future trends using plant-imaging methods. If effectively utilized to increase crop resilience to changing climates, crop phenotyping has a major role to play in global food security.
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Affiliation(s)
- Patrick Langan
- School of Biology and Environmental Science, University College Dublin, Dublin, Ireland
| | - Villő Bernád
- School of Biology and Environmental Science, University College Dublin, Dublin, Ireland
| | - Jason Walsh
- School of Biology and Environmental Science, University College Dublin, Dublin, Ireland
- School of Computer Science and UCD Energy Institute, University College Dublin, Dublin, Ireland
| | - Joey Henchy
- School of Biology and Environmental Science, University College Dublin, Dublin, Ireland
| | | | - Eleni Mangina
- School of Computer Science and UCD Energy Institute, University College Dublin, Dublin, Ireland
| | - Sónia Negrão
- School of Biology and Environmental Science, University College Dublin, Dublin, Ireland
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14
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Verma PK, Verma S, Pandey N. Root system architecture in rice: impacts of genes, phytohormones and root microbiota. 3 Biotech 2022; 12:239. [PMID: 36016841 PMCID: PMC9395555 DOI: 10.1007/s13205-022-03299-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Accepted: 08/01/2022] [Indexed: 11/28/2022] Open
Abstract
To feed the continuously expanding world's population, new crop varieties have been generated, which significantly contribute to the world's food security. However, the growth of these improved plant varieties relies primarily on synthetic fertilizers, which negatively affect the environment and human health; therefore, continuous improvement is needed for sustainable agriculture. Several plants, including cereal crops, have the adaptive capability to combat adverse environmental changes by altering physiological and molecular mechanisms and modifying their root system to improve nutrient uptake efficiency. These plants operate distinct pathways at various developmental stages to optimally establish their root system. These processes include changes in the expression profile of genes, changes in phytohormone level, and microbiome-induced root system architecture (RSA) modification. Several studies have been performed to understand microbial colonization and their involvement in RSA improvement through changes in phytohormone and transcriptomic levels. This review highlights the impact of genes, phytohormones, and particularly root microbiota in influencing RSA and provides new insights resulting from recent studies on rice root as a model system and summarizes the current knowledge about biochemical and central molecular mechanisms.
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Affiliation(s)
- Pankaj Kumar Verma
- Department of Botany, University of Lucknow, Lucknow, India
- Present Address: French Associates Institute for Agriculture and Biotechnology of Drylands, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, Israel
| | - Shikha Verma
- Present Address: French Associates Institute for Agriculture and Biotechnology of Drylands, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, Israel
| | - Nalini Pandey
- Department of Botany, University of Lucknow, Lucknow, India
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15
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The Pyramiding of Three Key Root Traits Aid Breeding of Flood-Tolerant Rice. PLANTS 2022; 11:plants11152033. [PMID: 35956512 PMCID: PMC9370703 DOI: 10.3390/plants11152033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Revised: 08/02/2022] [Accepted: 08/02/2022] [Indexed: 11/17/2022]
Abstract
Flooding is constantly threatening the growth and yield of crops worldwide. When flooding kicks in, the soil becomes water-saturated and, therefore, the roots are the first organs to be exposed to excess water. Soon after flooding, the soil turns anoxic and the roots can no longer obtain molecular oxygen for respiration from the rhizosphere, rendering the roots dysfunctional. Rice, however, is a semi-aquatic plant and therefore relatively tolerant to flooding due to adaptive traits developed during evolution. In the present review, we have identified three key root traits, viz. cortical aerenchyma formation, a barrier to radial oxygen loss and adventitious root growth. The understanding of the physiological function, the molecular mechanisms, and the genetic regulation of these three traits has grown substantially and therefore forms the backbone of this review. Our synthesis of the recent literature shows each of the three key root traits contributes to flood tolerance in rice. One trait, however, is generally insufficient to enhance plant tolerance to flooding. Consequently, we suggest comprehensive use of all three adaptive traits in a pyramiding approach in order to improve tolerance to flooding in our major crops, in general, and in rice, in particular.
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16
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Shiono K, Koshide A, Iwasaki K, Oguri K, Fukao T, Larsen M, Glud RN. Imaging the snorkel effect during submerged germination in rice: Oxygen supply via the coleoptile triggers seminal root emergence underwater. FRONTIERS IN PLANT SCIENCE 2022; 13:946776. [PMID: 35968087 PMCID: PMC9372499 DOI: 10.3389/fpls.2022.946776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/18/2022] [Accepted: 07/11/2022] [Indexed: 06/15/2023]
Abstract
Submergence during germination impedes aerobic metabolisms and limits the growth of most higher plants. However, some wetland plants including rice can germinate under submerged conditions. It has long been hypothesized that the first elongating shoot tissue, the coleoptile, acts as a snorkel to acquire atmospheric oxygen (O2) to initiate the first leaf elongation and seminal root emergence. Here, we obtained direct evidence for this hypothesis by visualizing the spatiotemporal O2 dynamics during submerged germination in rice using a planar O2 optode system. In parallel with the O2 imaging, we tracked the anatomical development of shoot and root tissues in real-time using an automated flatbed scanner. Three hours after the coleoptile tip reached the water surface, O2 levels around the embryo transiently increased. At this time, the activity of alcohol dehydrogenase (ADH), an enzyme critical for anaerobic metabolism, was significantly reduced, and the coleorhiza covering the seminal roots in the embryo was broken. Approximately 10 h after the transient burst in O2, seminal roots emerged. A transient O2 burst around the embryo was shown to be essential for seminal root emergence during submerged rice germination. The parallel application of a planar O2 optode system and automated scanning system can be a powerful tool for examining how environmental conditions affect germination in rice and other plants.
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Affiliation(s)
- Katsuhiro Shiono
- Department of Bioscience and Biotechnology, Fukui Prefectural University, Fukui, Japan
| | - Akiko Koshide
- Department of Bioscience and Biotechnology, Fukui Prefectural University, Fukui, Japan
| | - Kazunari Iwasaki
- Department of Bioscience and Biotechnology, Fukui Prefectural University, Fukui, Japan
| | - Kazumasa Oguri
- HADAL and Nordcee, Department of Biology, University of Southern Denmark, Odense, Denmark
- Research Institute of Global Change, Japan Agency for Marine-Earth Science and Technology, Yokosuka, Japan
| | - Takeshi Fukao
- Department of Bioscience and Biotechnology, Fukui Prefectural University, Fukui, Japan
| | - Morten Larsen
- HADAL and Nordcee, Department of Biology, University of Southern Denmark, Odense, Denmark
| | - Ronnie N. Glud
- HADAL and Nordcee, Department of Biology, University of Southern Denmark, Odense, Denmark
- Department of Ocean and Environmental Sciences, Tokyo University of Marine Science and Technology, Minato, Japan
- Danish Institute of Advanced Studies, University of Southern Denmark, Odense, Denmark
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17
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Koyro HW, Huchzermeyer B. From Soil Amendments to Controlling Autophagy: Supporting Plant Metabolism under Conditions of Water Shortage and Salinity. PLANTS 2022; 11:plants11131654. [PMID: 35807605 PMCID: PMC9269222 DOI: 10.3390/plants11131654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Revised: 06/03/2022] [Accepted: 06/16/2022] [Indexed: 11/30/2022]
Abstract
Crop resistance to environmental stress is a major issue. The globally increasing land degradation and desertification enhance the demand on management practices to balance both food and environmental objectives, including strategies that tighten nutrient cycles and maintain yields. Agriculture needs to provide, among other things, future additional ecosystem services, such as water quantity and quality, runoff control, soil fertility maintenance, carbon storage, climate regulation, and biodiversity. Numerous research projects have focused on the food–soil–climate nexus, and results were summarized in several reviews during the last decades. Based on this impressive piece of information, we have selected only a few aspects with the intention of studying plant–soil interactions and methods for optimization. In the short term, the use of soil amendments is currently attracting great interest to cover the current demand in agriculture. We will discuss the impact of biochar at water shortage, and plant growth promoting bacteria (PGPB) at improving nutrient supply to plants. In this review, our focus is on the interplay of both soil amendments on primary reactions of photosynthesis, plant growth conditions, and signaling during adaptation to environmental stress. Moreover, we aim at providing a general overview of how dehydration and salinity affect signaling in cells. With the use of the example of abscisic acid (ABA) and ethylene, we discuss the effects that can be observed when biochar and PGPB are used in the presence of stress. The stress response of plants is a multifactorial trait. Nevertheless, we will show that plants follow a general concept to adapt to unfavorable environmental conditions in the short and long term. However, plant species differ in the upper and lower regulatory limits of gene expression. Therefore, the presented data may help in the identification of traits for future breeding of stress-resistant crops. One target for breeding could be the removal and efficient recycling of damaged as well as needless compounds and structures. Furthermore, in this context, we will show that autophagy can be a useful goal of breeding measures, since the recycling of building blocks helps the cells to overcome a period of imbalanced substrate supply during stress adjustment.
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Affiliation(s)
- Hans-Werner Koyro
- Institute of Plantecology, Justus-Liebig-University, Heinrich-Buff-Ring 26, 35392 Giessen, Germany
- Correspondence:
| | - Bernhard Huchzermeyer
- Institute of Botany, Leibniz Universitaet Hannover, Herrenhaeuser Str. 2, 30416 Hannover, Germany; or
- AK Biotechnology, VDI-BV-Hannover, Hanomagstr. 12, 30449 Hannover, Germany
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18
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Kořínková N, Fontana IM, Nguyen TD, Pouramini P, Bergougnoux V, Hensel G. Enhancing cereal productivity by genetic modification of root architecture. Biotechnol J 2022; 17:e2100505. [PMID: 35537849 DOI: 10.1002/biot.202100505] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Revised: 04/03/2022] [Accepted: 04/23/2022] [Indexed: 11/06/2022]
Abstract
Food security is one of the main topics of today's agriculture, primarily due to increasingly challenging environmental conditions. As most of humankind has a daily intake of cereal grains, current breeding programs focus on these crop plants. Customised endonucleases have been included in the breeders' toolbox after successfully demonstrating their use. Due to technological restrictions, the main focus of the new technology was on above-ground plant organs. In contrast, the essential below ground components were given only limited attention. In the present review, the knowledge of the root system architecture in cereals and the role of phytohormones during their establishment is summarized, and the underlying molecular mechanisms are outlined. The review summarizes how the use of CRISPR-based genome editing methodology can improve the root system architecture to enhance crop production genetically. Finally, future research directions involving this knowledge and technical advances are suggested. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Nikola Kořínková
- Centre of Region Haná for Biotechnological and Agricultural Research, Czech Advanced Technology and Research Institute, Palacký University Olomouc, Olomouc, CZ-78371.,Faculty of Science, Palacký University Olomouc, Olomouc, CZ-78371
| | - Irene M Fontana
- Leibniz Institute of Plant Genetics and Crop Plant Research, Plant Reproductive Biology, D-06466 Seeland OT, Gatersleben
| | - Thu D Nguyen
- Centre of Region Haná for Biotechnological and Agricultural Research, Czech Advanced Technology and Research Institute, Palacký University Olomouc, Olomouc, CZ-78371.,Faculty of Science, Palacký University Olomouc, Olomouc, CZ-78371
| | - Pouneh Pouramini
- Leibniz Institute of Plant Genetics and Crop Plant Research, Plant Reproductive Biology, D-06466 Seeland OT, Gatersleben
| | - Véronique Bergougnoux
- Centre of Region Haná for Biotechnological and Agricultural Research, Czech Advanced Technology and Research Institute, Palacký University Olomouc, Olomouc, CZ-78371
| | - Goetz Hensel
- Centre of Region Haná for Biotechnological and Agricultural Research, Czech Advanced Technology and Research Institute, Palacký University Olomouc, Olomouc, CZ-78371.,Centre for Plant Genome Engineering, Institute of Plant Biochemistry, Heinrich-Heine-University, D-40225, Dusseldorf
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19
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Manik SMN, Quamruzzaman M, Zhao C, Johnson P, Hunt I, Shabala S, Zhou M. Genome-Wide Association Study Reveals Marker Trait Associations (MTA) for Waterlogging-Triggered Adventitious Roots and Aerenchyma Formation in Barley. Int J Mol Sci 2022; 23:ijms23063341. [PMID: 35328762 PMCID: PMC8954902 DOI: 10.3390/ijms23063341] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Accepted: 03/16/2022] [Indexed: 12/31/2022] Open
Abstract
Waterlogging is an environmental stress, which severely affects barley growth and development. Limited availability of oxygen in the root zone negatively affects the metabolism of the whole plant. Adventitious roots (AR) and root cortical aerenchyma (RCA) formation are the most important adaptive traits that contribute to a plant's ability to survive in waterlogged soil conditions. This study used a genome-wide association (GWAS) approach using 18,132 single nucleotide polymorphisms (SNPs) in a panel of 697 barley genotypes to reveal marker trait associations (MTA) conferring the above adaptive traits. Experiments were conducted over two consecutive years in tanks filled with soil and then validated in field experiments. GWAS analysis was conducted using general linear models (GLM), mixed linear models (MLM), and fixed and random model circulating probability unification models (FarmCPU model), with the FarmCPU showing to be the best suited model. Six and five significant (approximately -log10 (p) ≥ 5.5) MTA were identified for AR and RCA formation under waterlogged conditions, respectively. The highest -log10 (p) MTA for adventitious root and aerenchyma formation were approximately 9 and 8 on chromosome 2H and 4H, respectively. The combination of different MTA showed to be more effective in forming RCA and producing more AR under waterlogging stress. Genes from major facilitator superfamily (MFS) transporter and leucine-rich repeat (LRR) families for AR formation, and ethylene responsive factor (ERF) family genes and potassium transporter family genes for RCA formation were the potential candidate genes involved under waterlogging conditions. Several genotypes, which performed consistently well under different conditions, can be used in breeding programs to develop waterlogging-tolerant varieties.
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Affiliation(s)
- S. M. Nuruzzaman Manik
- Tasmanian Institute of Agriculture, University of Tasmania, Launceston, TAS 7250, Australia; (S.M.N.M.); (M.Q.); (C.Z.); (P.J.); (I.H.); (S.S.)
| | - Md Quamruzzaman
- Tasmanian Institute of Agriculture, University of Tasmania, Launceston, TAS 7250, Australia; (S.M.N.M.); (M.Q.); (C.Z.); (P.J.); (I.H.); (S.S.)
| | - Chenchen Zhao
- Tasmanian Institute of Agriculture, University of Tasmania, Launceston, TAS 7250, Australia; (S.M.N.M.); (M.Q.); (C.Z.); (P.J.); (I.H.); (S.S.)
| | - Peter Johnson
- Tasmanian Institute of Agriculture, University of Tasmania, Launceston, TAS 7250, Australia; (S.M.N.M.); (M.Q.); (C.Z.); (P.J.); (I.H.); (S.S.)
| | - Ian Hunt
- Tasmanian Institute of Agriculture, University of Tasmania, Launceston, TAS 7250, Australia; (S.M.N.M.); (M.Q.); (C.Z.); (P.J.); (I.H.); (S.S.)
| | - Sergey Shabala
- Tasmanian Institute of Agriculture, University of Tasmania, Launceston, TAS 7250, Australia; (S.M.N.M.); (M.Q.); (C.Z.); (P.J.); (I.H.); (S.S.)
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan 528000, China
| | - Meixue Zhou
- Tasmanian Institute of Agriculture, University of Tasmania, Launceston, TAS 7250, Australia; (S.M.N.M.); (M.Q.); (C.Z.); (P.J.); (I.H.); (S.S.)
- Correspondence:
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20
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Deng X, Yang D, Sun H, Liu J, Song H, Xiong Y, Wang Y, Ma J, Zhang M, Li J, Liu Y, Yang M. Time-course analysis and transcriptomic identification of key response strategies to complete submergence in Nelumbo nucifera. HORTICULTURE RESEARCH 2022; 9:uhac001. [PMID: 35147174 PMCID: PMC8973275 DOI: 10.1093/hr/uhac001] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2020] [Accepted: 12/12/2021] [Indexed: 05/12/2023]
Abstract
Water submergence is an environmental stress with detrimental effects on plant growth and survival. As a wetland plant species, lotus (Nelumbo nucifera) is widely cultivated in flood-prone lowlands throughout Asian countries, but little is known about its endurance and acclimation mechanisms to complete submergence. Here, we combined a time-course submergence experiment and an RNA-sequencing transcriptome analysis on two lotus varieties of "Qiuxing" and "China Antique". Both varieties showed a low submergence tolerance, with a median lethal time of around 10 days. Differentially expressed gene (DEG) analysis and weighted gene co-expression network analysis (WGCNA) identified a number of key genes putatively involved in lotus submergence responses. Lotus plants under complete submergence developed thinned leaves and elongated petioles containing high density of aerenchyma. All four lotus submergence responsive ERF-VII genes and gene sets corresponding to the low oxygen "escape" strategy (LOES) were elevated. In addition, a number of lotus innate immunity genes were rapidly induced by submergence, likely to confer resistance to possible pathogen infections. Our data also reveals the likely involvement of jasmonic acid in modulating lotus submergence responses, but to a lesser extent than the gaseous ethylene hormone. These results suggest that lotus plants primarily take the LOES strategy in coping with submergence-induced complex stresses, and will be valuable for people understanding the molecular basis underlying the plant submergence acclimations.
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Affiliation(s)
- Xianbao Deng
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan 430074, China
| | - Dong Yang
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan 430074, China
| | - Heng Sun
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
| | - Juan Liu
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
| | - Heyun Song
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- University of Chinese Academy of Sciences, 19A Yuquanlu, Beijing, 100049, China
| | - Yaqian Xiong
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- University of Chinese Academy of Sciences, 19A Yuquanlu, Beijing, 100049, China
| | - Yunmeng Wang
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- University of Chinese Academy of Sciences, 19A Yuquanlu, Beijing, 100049, China
| | - Junyu Ma
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- University of Chinese Academy of Sciences, 19A Yuquanlu, Beijing, 100049, China
| | - Minghua Zhang
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- University of Chinese Academy of Sciences, 19A Yuquanlu, Beijing, 100049, China
| | - Jing Li
- School of Chemistry, Chemical Engineering and Life Sciences, Wuhan University of Technology, Wuhan 430070, China
| | - Yanling Liu
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan 430074, China
| | - Mei Yang
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan 430074, China
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21
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The Pellicle-Another Strategy of the Root Apex Protection against Mechanical Stress? Int J Mol Sci 2021; 22:ijms222312711. [PMID: 34884528 PMCID: PMC8658001 DOI: 10.3390/ijms222312711] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2021] [Revised: 11/20/2021] [Accepted: 11/22/2021] [Indexed: 11/16/2022] Open
Abstract
In grasses, the apical part of the root is covered by a two-layered deposit of extracellular material, the pellicle, which together with the outer periclinal wall of protodermal cells forms the three-layered epidermal surface. In this study, the effect of mechanical stress on the pellicle was examined. An experiment was performed, in which maize roots were grown in narrow diameter plastic tubes with conical endings for 24 h. Two groups of experimental roots were included in the analysis: stressed (S) roots, whose tips did not grow out of the tubes, and recovering (R) roots, whose apices grew out of the tube. Control (C) roots grew freely between the layers of moist filter paper. Scanning electron microscopy and confocal microscopy analysis revealed microdamage in all the layers of the epidermal surface of S roots, however, protodermal cells in the meristematic zone remained viable. The outermost pellicle layer was twice as thick as in C roots. In R roots, large areas of dead cells were observed between the meristematic zone and the transition zone. The pellicle was defective with a discontinuous and irregular outermost layer. In the meristematic zone the pellicle was undamaged and the protodermal cells were intact. The results lead to the conclusion that the pellicle may prevent damage to protodermal cells, thus protecting the root apical meristem from the negative effects of mechano-stress.
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22
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Kacprzyk J, Burke R, Schwarze J, McCabe PF. Plant programmed cell death meets auxin signalling. FEBS J 2021; 289:1731-1745. [PMID: 34543510 DOI: 10.1111/febs.16210] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Revised: 08/26/2021] [Accepted: 09/17/2021] [Indexed: 11/28/2022]
Abstract
Both auxin signalling and programmed cell death (PCD) are essential components of a normally functioning plant. Auxin underpins plant growth and development, as well as regulating plant defences against environmental stresses. PCD, a genetically controlled pathway for selective elimination of redundant, damaged or infected cells, is also a key element of many developmental processes and stress response mechanisms in plants. An increasing body of evidence suggests that auxin signalling and PCD regulation are often connected. While generally auxin appears to suppress cell death, it has also been shown to promote PCD events, most likely via stimulation of ethylene biosynthesis. Intriguingly, certain cells undergoing PCD have also been suggested to control the distribution of auxin in plant tissues, by either releasing a burst of auxin or creating an anatomical barrier to auxin transport and distribution. These recent findings indicate novel roles of localized PCD events in the context of plant development such as control of root architecture, or tissue regeneration following injury, and suggest exciting possibilities for incorporation of this knowledge into crop improvement strategies.
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Affiliation(s)
- Joanna Kacprzyk
- School of Biology and Environmental Science, Science Centre, University College Dublin, Dublin, Ireland
| | - Rory Burke
- School of Biology and Environmental Science, Science Centre, University College Dublin, Dublin, Ireland
| | - Johanna Schwarze
- School of Biology and Environmental Science, Science Centre, University College Dublin, Dublin, Ireland
| | - Paul F McCabe
- School of Biology and Environmental Science, Science Centre, University College Dublin, Dublin, Ireland
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23
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Zhang H, Li G, Yan C, Cao N, Yang H, Le M, Zhu F. Depicting the molecular responses of adventitious rooting to waterlogging in melon hypocotyls by transcriptome profiling. 3 Biotech 2021; 11:351. [PMID: 34221821 DOI: 10.1007/s13205-021-02866-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Accepted: 05/31/2021] [Indexed: 12/13/2022] Open
Abstract
Waterlogging is a severe abiotic stressor that inhibits crop growth and productivity owing to the decline in the amount of oxygen available to the waterlogged organs. Although melon (Cucumis melo L.) is sensitive to waterlogging, its ability to form adventitious roots facilitates the diffusion of oxygen and allows the plant to survive waterlogging. To provide comprehensive insight into the adventitious rooting in response to waterlogging of melon, global transcriptome changes during this process were investigated. Of the 17,146 genes expressed during waterlogging, 7363 of them were differentially expressed in the pairwise comparisons between different waterlogging treatment time points. A further analysis suggested that the genes involved in sugar cleavage, glycolysis, fermentation, reactive oxygen species scavenging, cell wall modification, cell cycle governing, microtubule remodeling, hormone signals and transcription factors could play crucial roles in the adventitious root production induced by waterlogging. Additionally, ethylene and ERFs were found to be vital factors that function in melon during adventitious rooting. This study broadens our understanding of the mechanisms that underlie adventitious rooting induced by waterlogging and lays the theoretical foundation for further molecular breeding of waterlogging-tolerant melon. SUPPLEMENTARY INFORMATION The online version contains supplementary material available at 10.1007/s13205-021-02866-w.
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Affiliation(s)
- Huanxin Zhang
- Institute of Horticulture, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200 China
| | - Guoquan Li
- Institute of Horticulture, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200 China
| | - Chengpu Yan
- Institute of Horticulture, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200 China
| | - Na Cao
- Institute of Horticulture, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200 China
| | - Huidong Yang
- Institute of Horticulture, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200 China
| | - Meiwang Le
- Institute of Horticulture, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200 China
| | - Fanghong Zhu
- Institute of Horticulture, Jiangxi Academy of Agricultural Sciences, Nanchang, 330200 China
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24
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Exogenous 3,3'-Diindolylmethane Improves Vanadium Stress Tolerance in Brassica napus Seedling Shoots by Modulating Antioxidant Enzyme Activities. Biomolecules 2021; 11:biom11030436. [PMID: 33809550 PMCID: PMC7998531 DOI: 10.3390/biom11030436] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2021] [Revised: 02/24/2021] [Accepted: 02/25/2021] [Indexed: 11/30/2022] Open
Abstract
3,3′-diindolylmethane (DIM) belongs to a family of indole glucosinolate compounds that have been shown to improve Brassica napus growth through the modulation of reactive oxygen species when applied exogenously. The B. napus cultivar AV Garnet was previously identified as a vanadium-sensitive cultivar. Therefore, in this study we investigated whether exogenous DIM could improve the vanadium tolerance of AV Garnet. We performed the following experiments: seed germination assessment, dry weight assessment, cell viability assay, chlorophyll content assay, malondialdehyde (MDA) assay, conjugated diene (CD) content assay, hydrogen peroxide (H2O2) content assay, superoxide (O2−) content determination, methylglyoxal (MG) content determination, hydroxyl radical (·OH) concentration determination, ascorbate peroxidase (APX) activity assay, superoxide dismutase (SOD) activity assay, glyoxalase I (Gly I) activity assay, glutathione S-transferase (GST) activity assay and inductively coupled plasma optical emission spectroscopy (ICP-OES) analysis for vanadium content determination. Under vanadium stress, exogenous DIM increased the seed germination percentage, shoot dry weight, cell viability and chlorophyll content. Exogenous DIM also led to a decrease in MDA, CD, H2O2, O2−, MG and ·OH, under vanadium stress in the shoots. Furthermore, DIM application led to an increase in the enzymatic activities of APX, SOD, Gly I and GST under vanadium stress. Interestingly, under vanadium stress, DIM treatment did not alter vanadium content in B. napus shoots. Our results indicate that exogenous application of DIM can improve B. napus seedling shoot growth and biomass under vanadium stress by priming the antioxidant enzymes via reactive oxygen species (ROS) signaling.
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25
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Li QQ, Zhang Z, Wang YL, Zhong LY, Chao ZF, Gao YQ, Han ML, Xu L, Chao DY. Phytochrome B inhibits darkness-induced hypocotyl adventitious root formation by stabilizing IAA14 and suppressing ARF7 and ARF19. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 105:1689-1702. [PMID: 33354819 DOI: 10.1111/tpj.15142] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2020] [Revised: 12/10/2020] [Accepted: 12/17/2020] [Indexed: 06/12/2023]
Abstract
Adventitious roots (ARs) are an important root type for plants and display a high phenotypic plasticity in response to different environmental stimuli. Previous studies found that dark-light transition can trigger AR formation from the hypocotyl of etiolated Arabidopsis thaliana, which was used as a model for the identification of regulators of AR biogenesis. However, the central regulatory machinery for darkness-induced hypocotyl AR (HAR) remains elusive. Here, we report that photoreceptors suppress HAR biogenesis through regulating the molecular module essential for lateral roots. We found that hypocotyls embedded in soil or in continuous darkness are able to develop HARs, wherein photoreceptors act as negative regulators. Distinct from wound-induced ARs that require WOX11 and WOX12, darkness-induced HARs are fully dependent on ARF7, ARF19, WOX5/7, and LBD16. Further studies established that PHYB interacts with IAA14, ARF7, and ARF9. The interactions stabilize IAA14 and inhibit the transcriptional activities of ARF7 and ARF19 and thus suppress biogenesis of darkness-induced HARs. This finding not only revealed the central machinery controlling HAR biogenesis but also illustrated that AR formation could be initiated by multiple pathways.
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Affiliation(s)
- Qian-Qian Li
- National Key Laboratory of Plant Molecular Genetics, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Zhan Zhang
- National Key Laboratory of Plant Molecular Genetics, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China
| | - Ya-Ling Wang
- National Key Laboratory of Plant Molecular Genetics, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China
| | - Li-Yuan Zhong
- National Key Laboratory of Plant Molecular Genetics, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Zhen-Fei Chao
- National Key Laboratory of Plant Molecular Genetics, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yi-Qun Gao
- National Key Laboratory of Plant Molecular Genetics, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China
| | - Mei-Ling Han
- National Key Laboratory of Plant Molecular Genetics, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China
| | - Lin Xu
- National Key Laboratory of Plant Molecular Genetics, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China
| | - Dai-Yin Chao
- National Key Laboratory of Plant Molecular Genetics, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China
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26
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Jia W, Ma M, Chen J, Wu S. Plant Morphological, Physiological and Anatomical Adaption to Flooding Stress and the Underlying Molecular Mechanisms. Int J Mol Sci 2021; 22:ijms22031088. [PMID: 33499312 PMCID: PMC7865476 DOI: 10.3390/ijms22031088] [Citation(s) in RCA: 40] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Revised: 01/17/2021] [Accepted: 01/19/2021] [Indexed: 01/09/2023] Open
Abstract
Globally, flooding is a major threat causing substantial yield decline of cereal crops, and is expected to be even more serious in many parts of the world due to climatic anomaly in the future. Understanding the mechanisms of plants coping with unanticipated flooding will be crucial for developing new flooding-tolerance crop varieties. Here we describe survival strategies of plants adaptation to flooding stress at the morphological, physiological and anatomical scale systemically, such as the formation of adventitious roots (ARs), aerenchyma and radial O2 loss (ROL) barriers. Then molecular mechanisms underlying the adaptive strategies are summarized, and more than thirty identified functional genes or proteins associated with flooding-tolerance are searched out and expounded. Moreover, we elaborated the regulatory roles of phytohormones in plant against flooding stress, especially ethylene and its relevant transcription factors from the group VII Ethylene Response Factor (ERF-VII) family. ERF-VIIs of main crops and several reported ERF-VIIs involving plant tolerance to flooding stress were collected and analyzed according to sequence similarity, which can provide references for screening flooding-tolerant genes more precisely. Finally, the potential research directions in the future were summarized and discussed. Through this review, we aim to provide references for the studies of plant acclimation to flooding stress and breeding new flooding-resistant crops in the future.
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27
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Rusaczonek A, Czarnocka W, Willems P, Sujkowska-Rybkowska M, Van Breusegem F, Karpiński S. Phototropin 1 and 2 Influence Photosynthesis, UV-C Induced Photooxidative Stress Responses, and Cell Death. Cells 2021; 10:cells10020200. [PMID: 33498294 PMCID: PMC7909289 DOI: 10.3390/cells10020200] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Revised: 01/10/2021] [Accepted: 01/16/2021] [Indexed: 12/26/2022] Open
Abstract
Phototropins are plasma membrane-associated photoreceptors of blue light and UV-A/B radiation. The Arabidopsis thaliana genome encodes two phototropins, PHOT1 and PHOT2, that mediate phototropism, chloroplast positioning, and stomatal opening. They are well characterized in terms of photomorphogenetic processes, but so far, little was known about their involvement in photosynthesis, oxidative stress responses, and cell death. By analyzing phot1, phot2 single, and phot1phot2 double mutants, we demonstrated that both phototropins influence the photochemical and non-photochemical reactions, photosynthetic pigments composition, stomata conductance, and water-use efficiency. After oxidative stress caused by UV-C treatment, phot1 and phot2 single and double mutants showed a significantly reduced accumulation of H2O2 and more efficient photosynthetic electron transport compared to the wild type. However, all phot mutants exhibited higher levels of cell death four days after UV-C treatment, as well as deregulated gene expression. Taken together, our results reveal that on the one hand, both phot1 and phot2 contribute to the inhibition of UV-C-induced foliar cell death, but on the other hand, they also contribute to the maintenance of foliar H2O2 levels and optimal intensity of photochemical reactions and non-photochemical quenching after an exposure to UV-C stress. Our data indicate a novel role for phototropins in the condition-dependent optimization of photosynthesis, growth, and water-use efficiency as well as oxidative stress and cell death response after UV-C exposure.
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Affiliation(s)
- Anna Rusaczonek
- Department of Botany, Institute of Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland; (W.C.); (M.S.-R.)
- Department of Plant Genetics, Breeding and Biotechnology, Institute of Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland
- Correspondence: (A.R.); (S.K.)
| | - Weronika Czarnocka
- Department of Botany, Institute of Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland; (W.C.); (M.S.-R.)
- Department of Plant Genetics, Breeding and Biotechnology, Institute of Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland
| | - Patrick Willems
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium; (P.W.); (F.V.B.)
- VIB Center of Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
| | - Marzena Sujkowska-Rybkowska
- Department of Botany, Institute of Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland; (W.C.); (M.S.-R.)
| | - Frank Van Breusegem
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium; (P.W.); (F.V.B.)
- VIB Center of Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
| | - Stanisław Karpiński
- Department of Plant Genetics, Breeding and Biotechnology, Institute of Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland
- Correspondence: (A.R.); (S.K.)
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28
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Libao C, Minrong Z, Zhubing H, Huiying L, Shuyan L. Comparative transcriptome analysis revealed the cooperative regulation of sucrose and IAA on adventitious root formation in lotus (Nelumbo nucifera Gaertn). BMC Genomics 2020; 21:653. [PMID: 32967611 PMCID: PMC7510093 DOI: 10.1186/s12864-020-07046-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Accepted: 09/01/2020] [Indexed: 12/04/2022] Open
Abstract
Background In China, lotus is an important cultivated crop with multiple applications in ornaments, food, and environmental purification. Adventitious roots (ARs), a secondary root is necessary for the uptake of nutrition and water as the lotus principle root is underdeveloped. Therefore, AR formation in seedlings is very important for lotus breeding due to its effect on plant early growth. As lotus ARs formation was significantly affected by sucrose treatment, we analyzed the expression of genes and miRNAs upon treatment with differential concentrations of sucrose, and a crosstalk between sucrose and IAA was also identified. Results Notably, 20 mg/L sucrose promoted the ARs development, whereas 60 mg/L sucrose inhibited the formation of ARs. To investigate the regulatory pathway during ARs formation, the expression of genes and miRNAs was evaluated by high-throughput tag-sequencing. We observed that the expression of 5438, 5184, and 5345 genes was enhanced in the GL20/CK0, GL60/CK0, and CK1/CK0 libraries, respectively. Further, the expression of 73, 78, and 71 miRNAs was upregulated in the ZT20/MCK0, ZT60/MCK0, and MCK1/MCK0 libraries, respectively. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis revealed that most of the differentially expressed genes and miRNAs in the GL20/GL60 and ZT20/ZT60 libraries were involved in signal transduction. A large number of these genes (29) and miRNAs (53) were associated with plant hormone metabolism. We observed an association between five miRNAs (miR160, miR156a-5p, miR397-5p_1, miR396a and miR167d) and nine genes (auxin response factor, protein brassinosteroid insensitive 1, laccase, and peroxidase 27) in the ZT20/ ZT60 libraries during ARs formation. Quantitative polymerase chain reaction (qRT-PCR) was used to validate the high-throughput tag-sequencing data. Conclusions We found that the expression of many critical genes involved in IAA synthesis and IAA transport was changed after treatment with various concentration of sucrose. Based on the change of these genes expression, IAA and sucrose content, we concluded that sucrose and IAA cooperatively regulated ARs formation. Sucrose affected ARs formation by improving IAA content at induction stage, and increased sucrose content might be also required for ARs development according to the changes tendency after application of exogenous IAA.
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Affiliation(s)
- Cheng Libao
- School of Horticulture and Plant Protection, Yangzhou University, Yangzhou, Jiangsu, P. R. China.
| | - Zhao Minrong
- School of Horticulture and Plant Protection, Yangzhou University, Yangzhou, Jiangsu, P. R. China
| | - Hu Zhubing
- Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, Kaifeng, Henan, P. R. China
| | - Liu Huiying
- School of Horticulture and Plant Protection, Yangzhou University, Yangzhou, Jiangsu, P. R. China
| | - Li Shuyan
- College of Guangling, Yangzhou University, Yangzhou, Jiangsu, P. R. China.
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29
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Mignolli F, Todaro JS, Vidoz ML. Internal aeration and respiration of submerged tomato hypocotyls are enhanced by ethylene-mediated aerenchyma formation and hypertrophy. PHYSIOLOGIA PLANTARUM 2020; 169:49-63. [PMID: 31688957 DOI: 10.1111/ppl.13044] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2019] [Revised: 11/03/2019] [Accepted: 11/03/2019] [Indexed: 06/10/2023]
Abstract
With the impending threat that climate change is imposing on all terrestrial ecosystems, the ability of plants to adjust to changing environments is, more than ever, a very desirable trait. Tomato (Solanum lycopersicum L.) plants display a number of responses that allow them to survive under different abiotic stresses such as flooding. We focused on understanding the mechanism that facilitates oxygen diffusion to submerged tissues and the impact it has on sustaining respiration levels. We observed that, as flooding stress progresses, stems increase their diameter and internal porosity. Ethylene triggers stem hypertrophy by inducing cell wall loosening genes, and aerenchyma formation seems to involve programmed cell death mediated by hydrogen peroxide. We finally assessed whether these changes in stem morphology and anatomy are indeed effective to restore oxygen levels in submerged organs. We found that aerenchyma formation and hypertrophy not only increase oxygen diffusion toward the base of the plant, but also result in an augmented respiration rate. We consider that this response is crucial to maintain adventitious root development under such conditions and, therefore, making it possible for the plant to survive when the original roots die.
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Affiliation(s)
- Francesco Mignolli
- Instituto de Botánica del Nordeste (IBONE), UNNE-CONICET, Corrientes, Argentina
- Facultad de Ciencias Agrarias, Universidad Nacional del Nordeste (UNNE), Corrientes, Argentina
| | - Juan S Todaro
- Facultad de Medicina, Universidad Nacional del Nordeste (UNNE), Corrientes, Argentina
| | - María L Vidoz
- Instituto de Botánica del Nordeste (IBONE), UNNE-CONICET, Corrientes, Argentina
- Facultad de Ciencias Agrarias, Universidad Nacional del Nordeste (UNNE), Corrientes, Argentina
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30
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Czarnocka W, Rusaczonek A, Willems P, Sujkowska-Rybkowska M, Van Breusegem F, Karpiński S. Novel Role of JAC1 in Influencing Photosynthesis, Stomatal Conductance, and Photooxidative Stress Signalling Pathway in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 2020; 11:1124. [PMID: 32849690 PMCID: PMC7403226 DOI: 10.3389/fpls.2020.01124] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2020] [Accepted: 07/08/2020] [Indexed: 05/03/2023]
Abstract
Regulation of light absorption under variable light conditions is essential to optimize photosynthetic and acclimatory processes in plants. Light energy absorbed in excess has a damaging effect on chloroplasts and can lead to cell death. Therefore, plants have evolved protective mechanisms against excess excitation energy that include chloroplast accumulation and avoidance responses. One of the proteins involved in facilitating chloroplast movements in Arabidopsis thaliana is the J domain-containing protein required for chloroplast accumulation response 1 (JAC1). The function of JAC1 relates to the chloroplast actin filaments appearance and disappearance. So far, the role of JAC1 was studied mainly in terms of chloroplasts photorelocation. Here, we demonstrate that the function of JAC1 is more complex, since it influences the composition of photosynthetic pigments, the efficiency of photosynthesis, and the CO2 uptake rate. JAC1 has positive effect on water use efficiency (WUE) by reducing stomatal aperture and water vapor conductance. Importantly, we show that the stomatal aperture regulation is genetically coupled with JAC1 activity. In addition, our data demonstrate that JAC1 is involved in the fine-tuning of H2O2 foliar levels, antioxidant enzymes activities and cell death after UV-C photooxidative stress. This work uncovers a novel function for JAC1 in affecting photosynthesis, CO2 uptake, and photooxidative stress responses.
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Affiliation(s)
- Weronika Czarnocka
- Department of Botany, Institute of Biology, Warsaw University of Life Sciences, Warsaw, Poland
- Department of Plant Genetics, Breeding and Biotechnology, Institute of Biology, Warsaw University of Life Sciences, Warsaw, Poland
- *Correspondence: Weronika Czarnocka,
| | - Anna Rusaczonek
- Department of Botany, Institute of Biology, Warsaw University of Life Sciences, Warsaw, Poland
- Department of Plant Genetics, Breeding and Biotechnology, Institute of Biology, Warsaw University of Life Sciences, Warsaw, Poland
| | - Patrick Willems
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center of Plant Systems Biology, VIB, Ghent, Belgium
| | | | - Frank Van Breusegem
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center of Plant Systems Biology, VIB, Ghent, Belgium
| | - Stanisław Karpiński
- Department of Plant Genetics, Breeding and Biotechnology, Institute of Biology, Warsaw University of Life Sciences, Warsaw, Poland
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31
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Qi X, Li Q, Ma X, Qian C, Wang H, Ren N, Shen C, Huang S, Xu X, Xu Q, Chen X. Waterlogging-induced adventitious root formation in cucumber is regulated by ethylene and auxin through reactive oxygen species signalling. PLANT, CELL & ENVIRONMENT 2019; 42:1458-1470. [PMID: 30556134 DOI: 10.1111/pce.13504] [Citation(s) in RCA: 59] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2017] [Revised: 12/01/2018] [Accepted: 12/09/2018] [Indexed: 05/21/2023]
Abstract
Development of adventitious roots (ARs) at the base of the shoot is an important adaptation of plants to waterlogging stress; however, its physiological mechanisms remain unclear. Here, we investigated the regulation of AR formation under waterlogged conditions by hormones and reactive oxygen species (ROS) in Cucumis sativus L., an agriculturally and economically important crop in China. We found that ethylene, auxin, and ROS accumulated in the waterlogged cucumber plants. On the other hand, application of the ethylene receptor inhibitor 1-methylcyclopropene (1-MCP), the auxin transport inhibitor 1-naphthylphthalamic acid (NPA), or the NADPH oxidase inhibitor diphenyleneiodonium (DPI) decreased the number of ARs induced by waterlogging. Auxin enhanced the expression of ethylene biosynthesis genes, which led to ethylene entrapment in waterlogged plants. Both ethylene and auxin induced the generation of ROS. Auxin-induced AR formation was inhibited by 1-MCP, although ethylene-induced AR formation was not inhibited by NPA. Both ethylene- and auxin-induced AR formation were counteracted by DPI. These results indicate that auxin-induced AR formation is dependent on ethylene, whereas ethylene-induced AR formation is independent of auxin. They also show that ROS signals mediate both ethylene- and auxin-induced AR formation in cucumber plants.
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Affiliation(s)
- Xiaohua Qi
- Department of Horticulture, School of Horticulture and Plant Protection, Yangzhou University, Yangzhou, China
| | - Qianqian Li
- Department of Horticulture, School of Horticulture and Plant Protection, Yangzhou University, Yangzhou, China
| | - Xiaotian Ma
- Department of Horticulture, School of Horticulture and Plant Protection, Yangzhou University, Yangzhou, China
| | - Chunlu Qian
- Department of Food Science, School of Food Science and Engineering, Yangzhou University, Yangzhou, China
| | - Huihui Wang
- Department of Horticulture, School of Horticulture and Plant Protection, Yangzhou University, Yangzhou, China
| | - Nannan Ren
- Department of Horticulture, School of Horticulture and Plant Protection, Yangzhou University, Yangzhou, China
| | - Chenxi Shen
- Department of Horticulture, School of Horticulture and Plant Protection, Yangzhou University, Yangzhou, China
| | - Shumiao Huang
- Department of Horticulture, School of Horticulture and Plant Protection, Yangzhou University, Yangzhou, China
| | - Xuewen Xu
- Department of Horticulture, School of Horticulture and Plant Protection, Yangzhou University, Yangzhou, China
| | - Qiang Xu
- Department of Horticulture, School of Horticulture and Plant Protection, Yangzhou University, Yangzhou, China
| | - Xuehao Chen
- Department of Horticulture, School of Horticulture and Plant Protection, Yangzhou University, Yangzhou, China
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Lin C, Sauter M. Polar Auxin Transport Determines Adventitious Root Emergence and Growth in Rice. FRONTIERS IN PLANT SCIENCE 2019; 10:444. [PMID: 31024605 PMCID: PMC6465631 DOI: 10.3389/fpls.2019.00444] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2019] [Accepted: 03/25/2019] [Indexed: 05/23/2023]
Abstract
Flooding is a severe limitation for crop production worldwide. Unlike other crop plants, rice (Oryza sativa L.) is well adapted to partial submergence rendering it a suitable crop plant to understand flooding tolerance. Formation of adventitious roots (ARs), that support or replace the main root system, is a characteristic response to flooding. In rice, AR emergence is induced by ethylene and in the dark where roots grow upward. We used the synthetic auxins 2,4-D and α-NAA, and the auxin transport inhibitor naphthylphtalamic acid (NPA) to study emergence, growth rate and growth angle of ARs. While α-NAA had no effect, NPA and 2,4-D reduced the root elongation rate and the angle with a stronger effect on root angle in the dark than in the light. Furthermore, NPA delayed emergence of AR primordia suggesting that efflux carrier-mediated auxin transport is required for all aspects of directed AR growth. Expression analysis using OsPIN:GUS reporter lines revealed that OsPIN1b and OsPIN1c promoters were active in the stele and root cap in accord with their predicted role in acropetal auxin transport. OsPIN2 was expressed at the root tip and was reduced in the presence of NPA. Auxin activity, detected with DR5:VENUS, increased in primordia following growth induction. By contrast, auxin activity was high in epidermal cells above primordia and declined following growth induction suggesting that auxin levels are antagonistically regulated in AR primordia and in epidermal cells above AR primordia suggesting that auxin signaling contributes to the coordinated processes of epidermal cell death and AR emergence.
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Wany A, Gupta AK, Kumari A, Mishra S, Singh N, Pandey S, Vanvari R, Igamberdiev AU, Fernie AR, Gupta KJ. Nitrate nutrition influences multiple factors in order to increase energy efficiency under hypoxia in Arabidopsis. ANNALS OF BOTANY 2019; 123:691-705. [PMID: 30535180 PMCID: PMC6417481 DOI: 10.1093/aob/mcy202] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2018] [Accepted: 10/10/2018] [Indexed: 05/19/2023]
Abstract
BACKGROUND AND AIMS Nitrogen (N) levels vary between ecosystems, while the form of available N has a substantial impact on growth, development and perception of stress. Plants have the capacity to assimilate N in the form of either nitrate (NO3-) or ammonium (NH4+). Recent studies revealed that NO3- nutrition increases nitric oxide (NO) levels under hypoxia. When oxygen availability changes, plants need to generate energy to protect themselves against hypoxia-induced damage. As the effects of NO3- or NH4+ nutrition on energy production remain unresolved, this study was conducted to investigate the role of N source on group VII transcription factors, fermentative genes, energy metabolism and respiration under normoxic and hypoxic conditions. METHODS We used Arabidopsis plants grown on Hoagland medium with either NO3- or NH4+ as a source of N and exposed to 0.8 % oxygen environment. In both roots and seedlings, we investigated the phytoglobin-nitric oxide cycle and the pathways of fermentation and respiration; furthermore, NO levels were tested using a combination of techniques including diaminofluorescein fluorescence, the gas phase Griess reagent assay, respiration by using an oxygen sensor and gene expression analysis by real-time quantitative reverse transcription-PCR methods. KEY RESULTS Under NO3- nutrition, hypoxic stress leads to increases in nitrate reductase activity, NO production, class 1 phytoglobin transcript abundance and metphytoglobin reductase activity. In contrast, none of these processes responded to hypoxia under NH4+ nutrition. Under NO3- nutrition, a decreased total respiratory rate and increased alternative oxidase capacity and expression were observed during hypoxia. Data correlated with decreased reactive oxygen species and lipid peroxidation levels. Moreover, increased fermentation and NAD+ recycling as well as increased ATP production concomitant with the increased expression of transcription factor genes HRE1, HRE2, RAP2.2 and RAP2.12 were observed during hypoxia under NO3- nutrition. CONCLUSIONS The results of this study collectively indicate that nitrate nutrition influences multiple factors in order to increase energy efficiency under hypoxia.
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Affiliation(s)
- Aakanksha Wany
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India
| | - Alok Kumar Gupta
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India
| | - Aprajita Kumari
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India
| | - Sonal Mishra
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India
| | - Namrata Singh
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India
| | - Sonika Pandey
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India
| | - Rhythm Vanvari
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India
| | - Abir U Igamberdiev
- Department of Biology, Memorial University of Newfoundland, St. John’s, Canada
| | - Alisdair R Fernie
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
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Casto AL, McKinley BA, Yu KMJ, Rooney WL, Mullet JE. Sorghum stem aerenchyma formation is regulated by SbNAC_D during internode development. PLANT DIRECT 2018; 2:e00085. [PMID: 31245693 PMCID: PMC6508845 DOI: 10.1002/pld3.85] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2018] [Accepted: 09/12/2018] [Indexed: 05/10/2023]
Abstract
Sorghum bicolor is a drought-resilient C4 grass used for production of grain, forage, sugar, and biomass. Sorghum genotypes capable of accumulating high levels of stem sucrose have solid stems that contain low levels of aerenchyma. The D-locus on SBI06 modulates the extent of aerenchyma formation in sorghum stems and leaf midribs. A QTL aligned with this locus was identified and fine-mapped in populations derived from BTx623*IS320c, BTx623*R07007, and BTx623*Standard broomcorn. Analysis of coding polymorphisms in the fine-mapped D-locus showed that genotypes that accumulate low levels of aerenchyma encode a truncated NAC transcription factor (Sobic.006G147400, SbNAC_d1), whereas parental lines that accumulate higher levels of stem aerenchyma encode full-length NAC TFs (SbNAC-D). During vegetative stem development, aerenchyma levels are low in nonelongated stem internodes, internode growing zones, and nodes. Aerenchyma levels increase in recently elongated internodes starting at the top of the internode near the center of the stem. SbNAC_D was expressed at low levels in nonelongated internodes and internode growing zones and at higher levels in regions of stem internodes that form aerenchyma. SbXCP1, a gene encoding a cysteine protease involved in programmed cell death, was induced in SbNAC_D genotypes in parallel with aerenchyma formation in sorghum stems but not in SbNAC_d1 genotypes. Several sweet sorghum genotypes encode the recessive SbNAC_d1 allele and have low levels of stem aerenchyma. Based on these results, we propose that SbNAC_D is the D-gene identified by Hilton (1916) and that allelic variation in SbNAC_D modulates the extent of aerenchyma formation in sorghum stems.
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Affiliation(s)
- Anna L. Casto
- Department of Biochemistry and BiophysicsTexas A&M UniversityCollege StationTexas
- Molecular and Environmental Plant Sciences Graduate ProgramTexas A&M UniversityCollege StationTexas
| | - Brian A. McKinley
- Department of Biochemistry and BiophysicsTexas A&M UniversityCollege StationTexas
| | - Ka Man Jasmine Yu
- Department of Biochemistry and BiophysicsTexas A&M UniversityCollege StationTexas
- Biochemistry and Biophysics Graduate ProgramTexas A&M UniversityCollege StationTexas
| | - William L. Rooney
- Department of Soil and Crop SciencesTexas A&M UniversityCollege StationTexas
| | - John E. Mullet
- Department of Biochemistry and BiophysicsTexas A&M UniversityCollege StationTexas
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Fu Y, Yang X, Shen H. Root iron plaque alleviates cadmium toxicity to rice (Oryza sativa) seedlings. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2018; 161:534-541. [PMID: 29929129 DOI: 10.1016/j.ecoenv.2018.06.015] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2017] [Revised: 06/05/2018] [Accepted: 06/07/2018] [Indexed: 06/08/2023]
Abstract
Iron plaque (IP) on root surface can enhance the tolerance of plants to environmental stresses. However, it remains unclear the impact of Fe2+ on cadmium (Cd) toxicity to rice (Oryza sativa) seedlings. In this study, the effects of different Fe2+ and Cd2+ concentration combinations on rice growth were examined hydroponically. Results indicated that Fe2+ concentration up to 3.2 mM did not damage rice roots while induced IP formation obviously. Cd2+ of 10 μM repressed rice growth significantly, while the addition of 0.2 mM Fe2+ to 10 μM Cd2+ solution (Cd+Fe) did not damage rice roots, indicating that Fe2+ could ameliorate Cd toxicity to rice seedlings. Microstructure analysis showed Cd+Fe treatment induced the formation of IP with dense and intricate network structure, Cd adsorption on the root surface was reduced significantly. Cd concentration of rice roots and shoots and Cd translocation from roots to shoots with Fe+Cd treatment were reduced by 34.1%, 36.0% and 20.1%, respectively, in comparison to a single Cd treatment. Noteworthy, the removal of IP resulted in a larger loss of root biomass under Cd treatment. In addition, Cd+Fe treatment increased the activities of root superoxide dismutase and catalase by 105.5% and 177.4%, and decreased H2O2 and O2·- accumulation of rice roots by 56.9% and 35.9%, and recovered Cd-triggered electrolyte leakage obviously, when compared with a single Cd treatment. The results from this experiment indicated that the formed dense IP on rice roots decreased Cd absorption and reactive oxygen species accumulation, and Fe2+ supply alleviated Cd toxicity to rice seedlings.
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Affiliation(s)
- Youqiang Fu
- Rice Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, PR China; College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, PR China
| | - Xujian Yang
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, PR China
| | - Hong Shen
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, PR China.
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Cheng L, Liu H, Jiang R, Li S. A proteomics analysis of adventitious root formation after leaf removal in lotus (Nelumbo nucifera Gaertn.). Z NATURFORSCH C 2018; 73:375-389. [PMID: 29794259 DOI: 10.1515/znc-2018-0011] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Accepted: 04/30/2018] [Indexed: 12/12/2022]
Abstract
Abstract
The formation of adventitious roots (ARs) is an important process for lotus (Nelumbo nucifera), which does not have a well-formed main root. In lotus, the removal of leaves above the waterline significantly promoted AR formation, while the removal of leaves below the waterline inhibited AR formation. Proteins were identified using isobaric tags for relative and absolute quantization technique. The number of proteins decreased with increasing sequencing coverage, and most of the identified proteins had fewer than 10 peptides. In the A1/A0 and A2/A1 stages, 661 and 154 proteins showed increased abundance, respectively, and 498 and 111 proteins showed decreased abundance, respectively. In the B1/B0 and B2/B1 stages, 498 and 436 proteins showed increased abundance, respectively, and 358 and 348 proteins showed decreased abundance, respectively. Among the proteins showing large differences in abundance, 17 were identified as being related to AR formation. Proteins involved in the glycolytic pathway and the citrate cycle showed differences in abundance between the two types of leaf removal. The transcriptional levels of nine genes encoding relevant proteins were assessed by quantitative polymerase chain reaction. The results of this study illustrate the changes in metabolism after different types of leaf removal during AR formation in lotus.
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Affiliation(s)
- Libao Cheng
- School of Horticulture and Plant Protection, Yangzhou University, Jiangsu 225009, P.R. China
| | - Huiying Liu
- School of Horticulture and Plant Protection, Yangzhou University, Jiangsu, P.R. China
| | - Runzhi Jiang
- School of Horticulture and Plant Protection, Yangzhou University, Jiangsu, P.R. China
| | - Shuyan Li
- College of Guangling, Yangzhou University, Jiangsu 225009, P.R. China
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37
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Nguyen TN, Tuan PA, Mukherjee S, Son S, Ayele BT. Hormonal regulation in adventitious roots and during their emergence under waterlogged conditions in wheat. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:4065-4082. [PMID: 29788353 PMCID: PMC6054230 DOI: 10.1093/jxb/ery190] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2018] [Accepted: 05/14/2018] [Indexed: 05/21/2023]
Abstract
To gain insights into the molecular mechanisms underlying hormonal regulation in adventitious roots and during their emergence under waterlogged conditions in wheat, the present study investigated transcriptional regulation of genes related to hormone metabolism and transport in the root and stem node tissues. Waterlogging-induced inhibition of axile root elongation and lateral root formation, and promotion of surface adventitious and axile root emergence and aerenchyma formation are associated with enhanced expression levels of ethylene biosynthesis genes, ACS7 and ACO2, in both tissues. Inhibition of axile root elongation is also related to increased root indole acetic acid (IAA) and jasmonate (JA) levels that are associated with up-regulation of specific IAA biosynthesis/transport (TDC, YUC1, and PIN9) and JA metabolism (LOX8, AOS1, AOC1, and JAR1) genes, and transcriptional alteration of gibberellin (GA) metabolism genes (GA3ox2 and GA2ox8). Adventitious root emergence from waterlogged stem nodes is associated with increased levels of IAA and GA but decreased levels of cytokinin and abscisic acid (ABA), which are regulated through the expression of specific IAA biosynthesis/transport (TDC, YUC1, and PIN9), cytokinin metabolism (IPT5-2, LOG1, CKX5, and ZOG2), ABA biosynthesis (NCED1 and NCED2), and GA metabolism (GA3ox2 and GA2ox8) genes. These results enhance our understanding of the molecular mechanisms underlying the adaptive response of wheat to waterlogging.
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Affiliation(s)
- Tran-Nguyen Nguyen
- Department of Plant Science, University of Manitoba, Winnipeg, Manitoba, Canada
| | - Pham Anh Tuan
- Department of Plant Science, University of Manitoba, Winnipeg, Manitoba, Canada
| | - Shalini Mukherjee
- Department of Plant Science, University of Manitoba, Winnipeg, Manitoba, Canada
| | - SeungHyun Son
- Department of Plant Science, University of Manitoba, Winnipeg, Manitoba, Canada
| | - Belay T Ayele
- Department of Plant Science, University of Manitoba, Winnipeg, Manitoba, Canada
- Correspondence:
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38
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Yang X, Jansen MJ, Zhang Q, Sergeeva L, Ligterink W, Mariani C, Rieu I, Visser EJW. A disturbed auxin signaling affects adventitious root outgrowth in Solanum dulcamara under complete submergence. JOURNAL OF PLANT PHYSIOLOGY 2018; 224-225:11-18. [PMID: 29574325 DOI: 10.1016/j.jplph.2018.03.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2017] [Revised: 03/10/2018] [Accepted: 03/12/2018] [Indexed: 05/09/2023]
Abstract
Flooding negatively affects the growth and even survival of most terrestrial plants. Upon flooding, the excess water quickly decreases the gas exchange between atmosphere and the submerged plant tissues, which leads to oxygen deficiency resulting in a plant cell energy crisis, and eventually plant death. Solanum dulcamara survives flooding by producing aerenchymatous adventitious roots (ARs) from pre-formed primordia on the stem, which replace the original flood-sensitive root system. However, we found that under complete submergence, AR outgrowth was impaired in S. dulcamara. In the present work, we tried to elucidate the mechanisms behind this phenomenon in particular the involvement of the phytohormones auxin, abscisic acid and jasmonic acid. Abscisic acid (ABA) is a negative regulator of AR outgrowth, but surprisingly the ABA content and signaling were decreased to a similar extent under both partial and complete submergence, suggesting that ABA might not be responsible for the difference in AR outgrowth. Auxin, which is necessary for AR outgrowth, was at similar concentrations in either partially or completely submerged primordia, but complete submergence resulted in a decrease of auxin signaling in the primordia. Application of 1-naphthaleneacetic acid (NAA) to completely submerged plants restored AR outgrowth, implying that auxin response in the rooting tissues of completely submerged plants was reduced. Furthermore, jasmonic acid (JA) concentrations did not differ between partial and complete submergence. To conclude, a disruption in the auxin signaling within S. dulcamara AR primordia may result in the abortion of AR outgrowth under complete submergence.
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Affiliation(s)
- Xinping Yang
- Department of Molecular Plant Physiology, Institute for Water and Wetland Research, Radboud University Nijmegen, Heyendaalseweg 135, 6525AJ Nijmegen, the Netherlands.
| | - Martijn J Jansen
- Department of Molecular Plant Physiology, Institute for Water and Wetland Research, Radboud University Nijmegen, Heyendaalseweg 135, 6525AJ Nijmegen, the Netherlands
| | - Qian Zhang
- Department of Experimental Plant Ecology, Institute for Water and Wetland Research, Radboud University Nijmegen, Heyendaalseweg 135, 6525AJ Nijmegen, the Netherlands
| | - Lidiya Sergeeva
- Department of Plant Sciences, Wageningen University & Research, Droevendaalsesteeg 1, 6708PB Wageningen, the Netherlands
| | - Wilco Ligterink
- Department of Plant Sciences, Wageningen University & Research, Droevendaalsesteeg 1, 6708PB Wageningen, the Netherlands
| | - Celestina Mariani
- Department of Molecular Plant Physiology, Institute for Water and Wetland Research, Radboud University Nijmegen, Heyendaalseweg 135, 6525AJ Nijmegen, the Netherlands
| | - Ivo Rieu
- Department of Molecular Plant Physiology, Institute for Water and Wetland Research, Radboud University Nijmegen, Heyendaalseweg 135, 6525AJ Nijmegen, the Netherlands
| | - Eric J W Visser
- Department of Experimental Plant Ecology, Institute for Water and Wetland Research, Radboud University Nijmegen, Heyendaalseweg 135, 6525AJ Nijmegen, the Netherlands
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Cheng L, Jiang R, Yang J, Xu X, Zeng H, Li S. Transcriptome profiling reveals an IAA-regulated response to adventitious root formation in lotus seedling. Z NATURFORSCH C 2018; 73:229-240. [PMID: 29432208 DOI: 10.1515/znc-2017-0188] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2017] [Accepted: 01/20/2018] [Indexed: 11/15/2022]
Abstract
Adventitious roots (ARs) of lotus (Nelumbonucifera Gaertn.) play a critical role in water and nutrient uptake. We found that exogenously applied 10-μM indole-3-acetic acid (IAA) promoted the formation of ARs, while 150-μM IAA significantly inhibited the emergence of ARs. However, little is known about these different responses to various concentrations of IAA at the molecular level. This study, therefore, examined the gene expression profiling in four libraries treated with 10- and 150-μM IAA based on the high-throughout tag sequencing technique. Approximately 2.4×107 clean tags were obtained after the removal of low-quality tags from each library respectively, among which about 10% clean tags were unambiguous tag-mapped genes to the reference genes. We found that some genes involved in auxin metabolism showed a similar tendency for expression in the A/CK and C/CK libraries, while three genes were enhanced their expression only in the A/CK libraries. Two transcription factors including B3 domain-containing protein At2g36080-like and trihelix transcription factor were up-regulated for transcriptional level in the A/C libraries. The expressions of six important genes related to AR formation were significantly different in the A/CK and C/CK libraries. In summary, this study provides a comprehensive understanding of gene expression regulated by IAA involved in AR formation in lotus.
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Affiliation(s)
- Libao Cheng
- School of Horticulture and Plant Protection, Yangzhou University, Jiangsu, P.R. China
| | - Runzhi Jiang
- School of Horticulture and Plant Protection, Yangzhou University, Jiangsu, P.R. China
| | - Jianjun Yang
- School of Horticulture and Plant Protection, Yangzhou University, Jiangsu, P.R. China
| | - Xiaoyong Xu
- School of Horticulture and Plant Protection, Yangzhou University, Jiangsu, P.R. China
| | - Haitao Zeng
- College of Life Sciences and Technology, Shaanxi University of Technology, Hanzhong, P.R. China
| | - Shuyan Li
- College of Guangling, Yangzhou University, Jiangsu, P.R. China
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Li R, Wang S, Wang Y, Yu K. Development of a novel methodology for in vivo quantification of N/O/S-containing polycyclic aromatic hydrocarbons located on the epidermis of mangrove roots using graphene quantum dots as a fluorescence quencher. MARINE POLLUTION BULLETIN 2018; 127:424-428. [PMID: 29475680 DOI: 10.1016/j.marpolbul.2017.12.040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2017] [Revised: 12/14/2017] [Accepted: 12/15/2017] [Indexed: 06/08/2023]
Abstract
A novel approach for in vivo determination of typical N/O/S-containing PAHs located on the epidermis of mangrove roots was developed using graphene quantum dots (GQDs) as a fluorescence quencher. The decreasing fluorescence intensity from GQDs was attributed to the amount of N/O/S-containing PAHs introduced onto the epidermis of mangrove roots. The linear ranges of the proposed method were 10.3-980ngg-1, 9.5-1350ngg-1 and 7.8-1200ngg-1 for DBF, DBT and CAR located on the epidermis of K. obovata roots, respectively. This method was also shown to be valid for quantifying the N/O/S-containing PAHs on the root epidermis in the presence of heavy metal (10mmolL-1) and dissolved organic matter (1mgL-1 C). Moreover, the death rates of epidermal cells were almost unchanged (p>0.05) after acquiring the fluorescence spectra, which is superior to the previously reported LITRF method with which the cell death rates increased to 42.6%.
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Affiliation(s)
- Ruilong Li
- School of Marine Sciences, Guangxi University, Nanning 530004, PR China; Coral Reef Research Center of China, Guangxi University, Nanning 530004, PR China; Guangxi Laboratory on the Study of Coral Reefs in the South China Sea, Guangxi University, Nanning 530004, China
| | - Shaopeng Wang
- School of Marine Sciences, Guangxi University, Nanning 530004, PR China; Coral Reef Research Center of China, Guangxi University, Nanning 530004, PR China; Guangxi Laboratory on the Study of Coral Reefs in the South China Sea, Guangxi University, Nanning 530004, China
| | - Yinghui Wang
- School of Marine Sciences, Guangxi University, Nanning 530004, PR China; Coral Reef Research Center of China, Guangxi University, Nanning 530004, PR China; Guangxi Laboratory on the Study of Coral Reefs in the South China Sea, Guangxi University, Nanning 530004, China.
| | - Kefu Yu
- School of Marine Sciences, Guangxi University, Nanning 530004, PR China; Coral Reef Research Center of China, Guangxi University, Nanning 530004, PR China; Guangxi Laboratory on the Study of Coral Reefs in the South China Sea, Guangxi University, Nanning 530004, China.
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41
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Wany A, Kumari A, Gupta KJ. Nitric oxide is essential for the development of aerenchyma in wheat roots under hypoxic stress. PLANT, CELL & ENVIRONMENT 2017; 40:3002-3017. [PMID: 28857271 DOI: 10.1111/pce.13061] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2017] [Revised: 08/23/2017] [Accepted: 08/25/2017] [Indexed: 05/09/2023]
Abstract
In response to flooding/waterlogging, plants develop various anatomical changes including the formation of lysigenous aerenchyma for the delivery of oxygen to roots. Under hypoxia, plants produce high levels of nitric oxide (NO) but the role of this molecule in plant-adaptive response to hypoxia is not known. Here, we investigated whether ethylene-induced aerenchyma requires hypoxia-induced NO. Under hypoxic conditions, wheat roots produced NO apparently via nitrate reductase and scavenging of NO led to a marked reduction in aerenchyma formation. Interestingly, we found that hypoxically induced NO is important for induction of the ethylene biosynthetic genes encoding ACC synthase and ACC oxidase. Hypoxia-induced NO accelerated production of reactive oxygen species, lipid peroxidation, and protein tyrosine nitration. Other events related to cell death such as increased conductivity, increased cellulase activity, DNA fragmentation, and cytoplasmic streaming occurred under hypoxia, and opposing effects were observed by scavenging NO. The NO scavenger cPTIO (2-(4-carboxyphenyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide potassium salt) and ethylene biosynthetic inhibitor CoCl2 both led to reduced induction of genes involved in signal transduction such as phospholipase C, G protein alpha subunit, calcium-dependent protein kinase family genes CDPK, CDPK2, CDPK 4, Ca-CAMK, inositol 1,4,5-trisphosphate 5-phosphatase 1, and protein kinase suggesting that hypoxically induced NO is essential for the development of aerenchyma.
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Affiliation(s)
- Aakanksha Wany
- National Institute for Plant Genome Research, New Delhi, 110067, India
| | - Aprajita Kumari
- National Institute for Plant Genome Research, New Delhi, 110067, India
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Characterization of the Transcriptome and Gene Expression of Tetraploid Black Locust Cuttings in Response to Etiolation. Genes (Basel) 2017; 8:genes8120345. [PMID: 29186815 PMCID: PMC5748663 DOI: 10.3390/genes8120345] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2017] [Revised: 11/02/2017] [Accepted: 11/11/2017] [Indexed: 11/17/2022] Open
Abstract
Etiolation (a process of growing plants in partial or complete absence of light) promotes adventitious root formation in tetraploid black locust (Robinia pseudoacacia L.) cuttings. We investigated the mechanism underlying how etiolation treatment promotes adventitious root formation in tetraploid black locust and assessed global transcriptional changes after etiolation treatment. Solexa paired-end sequencing of complementary DNAs (cDNAs) from control (non-etiolated, NE) and etiolated (E) samples resulted in 107,564 unigenes. In total, 52,590 transcripts were annotated and 474 transcripts (211 upregulated and 263 downregulated) potentially involved in etiolation were differentially regulated. These genes were associated with hormone metabolism and response, photosynthesis, signaling pathways, and starch and sucrose metabolism. In addition, we also found significant differences of phytohormone contents, activity of following enzymes i.e., peroxidase, polyphenol oxidase and indole acetic acid oxidase between NE and E tissues during some cottage periods. The genes responsive to etiolation stimulus identified in this study will provide the base for further understanding how etiolation triggers adventitious roots formation in tetraploid black locus.
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43
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Xu X, Chen M, Ji J, Xu Q, Qi X, Chen X. Comparative RNA-seq based transcriptome profiling of waterlogging response in cucumber hypocotyls reveals novel insights into the de novo adventitious root primordia initiation. BMC PLANT BIOLOGY 2017; 17:129. [PMID: 28747176 PMCID: PMC5530484 DOI: 10.1186/s12870-017-1081-8] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2016] [Accepted: 07/21/2017] [Indexed: 05/03/2023]
Abstract
BACKGROUND Waterlogging is a serious abiotic stress to plant growth because it results in the decline in the supplement of oxygen to submerged tissues. Although cucumber (Cucumis sativus L.) is sensitive to waterlogging, its ability to generate adventitious roots (ARs) facilitates gas diffusion and increases plant survival when the oxygen concentration is decreased. To gain a better understanding of the molecular mechanisms that enable de novo AR primordia emergence upon waterlogging, the RNA sequencing-based transcriptomic responses of two contrasting cucumber genotypes, Zaoer-N (waterlogging tolerant) and Pepino (waterlogging sensitive), which differed in their abilities to form AR were compared. RESULTS More than 27,000 transcripts were detected in cucumber hypocotyls, from which 1494 and 1766 genes in 'Zaoer-N' and 'Pepino', respectively, were differentially expressed 2 days after waterlogging. The significant positive correlation between RNA sequencing data and a qPCR analysis indicated that the identified genes were credible. A comparative analysis revealed that genes functioning in carbohydrate mobilization, nitrate assimilation, hormone production and signaling pathways, transcription factors and cell division might contribute to the waterlogging-triggered AR primordia initiation. Ethylene was determined to be an important plant hormone responsible for the cucumber ARs initiation. Additionally, genes encoding cytochrome P450, ankyrin repeat-containing proteins and sulfite oxidases were determined as important in waterlogging acclimation. CONCLUSION This research broadens our understanding of the mechanism underlying waterlogging-triggered ARs emergence, and provides valuable information for the breeding of cucumber with enhanced waterlogging tolerance.
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Affiliation(s)
- Xuewen Xu
- Department of horticulture, School of Horticulture and Plant Protection, Yangzhou University, 48 wenhui eastroad, Yangzhou, Jiangsu 225009 China
| | - Minyang Chen
- Department of horticulture, School of Horticulture and Plant Protection, Yangzhou University, 48 wenhui eastroad, Yangzhou, Jiangsu 225009 China
| | - Jing Ji
- Department of horticulture, School of Horticulture and Plant Protection, Yangzhou University, 48 wenhui eastroad, Yangzhou, Jiangsu 225009 China
| | - Qiang Xu
- Department of horticulture, School of Horticulture and Plant Protection, Yangzhou University, 48 wenhui eastroad, Yangzhou, Jiangsu 225009 China
| | - Xiaohua Qi
- Department of horticulture, School of Horticulture and Plant Protection, Yangzhou University, 48 wenhui eastroad, Yangzhou, Jiangsu 225009 China
| | - Xuehao Chen
- Department of horticulture, School of Horticulture and Plant Protection, Yangzhou University, 48 wenhui eastroad, Yangzhou, Jiangsu 225009 China
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Pathirana R, West P, Hedderley D, Eason J. Cell death patterns in Arabidopsis cells subjected to four physiological stressors indicate multiple signalling pathways and cell cycle phase specificity. PROTOPLASMA 2017; 254:635-647. [PMID: 27193098 DOI: 10.1007/s00709-016-0977-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2016] [Accepted: 04/25/2016] [Indexed: 06/05/2023]
Abstract
Corpse morphology, nuclear DNA fragmentation, expression of senescence-associated genes (SAG) and cysteine protease profiles were investigated to understand cell death patterns in a cell cycle-synchronised Arabidopsis thaliana cell suspension culture treated with four physiological stressors in the late G2 phase. Within 4 h of treatment, polyethylene glycol (PEG, 20 %), mannose (100 mM) and hydrogen peroxide (2 mM) caused DNA fragmentation coinciding with cell permeability to Evans Blue (EB) and produced corpse morphology corresponding to apoptosis-like programmed cell death (AL-PCD) with cytoplasmic retraction from the cell wall. Ethylene (8 mL per 250-mL flask) caused permeability of cells to EB without concomitant nuclear DNA fragmentation and cytoplasmic retraction, suggesting necrotic cell death. Mannose inducing glycolysis block and PEG causing dehydration resulted in relatively similar patterns of upregulation of SAG suggesting similar cell death signalling pathways for these two stress factors, whereas hydrogen peroxide caused unique patterns indicating an alternate pathway for cell death induced by oxidative stress. Ethylene did not cause appreciable changes in SAG expression, confirming necrotic cell death. Expression of AtDAD, BoMT1 and AtSAG2 genes, previously shown to be associated with plant senescence, also changed rapidly during AL-PCD in cultured cells. The profiles of nine distinct cysteine protease-active bands ranging in size from ca. 21.5 to 38.5 kDa found in the control cultures were also altered after treatment with the four stressors, with mannose and PEG again producing similar patterns. Results also suggest that cysteine proteases may have a role in necrotic cell death.
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Affiliation(s)
- Ranjith Pathirana
- The New Zealand Institute for Plant & Food Research Limited, Private Bag 11600, Palmerston North, New Zealand.
| | - Phillip West
- The New Zealand Institute for Plant & Food Research Limited, Private Bag 11600, Palmerston North, New Zealand
- NZ Avocado, Level 5 Harrington House, 32 Harington Street, Tauranga, 3110, New Zealand
| | - Duncan Hedderley
- The New Zealand Institute for Plant & Food Research Limited, Private Bag 11600, Palmerston North, New Zealand
| | - Jocelyn Eason
- The New Zealand Institute for Plant & Food Research Limited, Private Bag 11600, Palmerston North, New Zealand
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Xu X, Ji J, Xu Q, Qi X, Chen X. Inheritance and quantitative trail loci mapping of adventitious root numbers in cucumber seedlings under waterlogging conditions. Mol Genet Genomics 2016; 292:353-364. [PMID: 27988808 DOI: 10.1007/s00438-016-1280-2] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2016] [Accepted: 12/07/2016] [Indexed: 12/23/2022]
Abstract
The hypocotyl-derived adventitious root (AR) is an important morphological acclimation to waterlogging stress; however, its genetic basis has not been adequately understood. In the present study, a mixed major gene plus polygene inheritance model was used to analyze AR numbers (ARN) 7 days after waterlogging treatment in six generations (P1, P2, F1, B1, B2, and F2), using cucumber waterlogging tolerant line Zaoer-N and sensitive Pepino as parents. The results showed that the genetic model D-4, mixed one negative dominance major gene and additive-dominance polygenes, is the best-fitting genetic model for waterlogging-triggered ARN phenotype. A genetic linkage map spanning 550.8 cM and consisting of 149 simple sequence repeat (SSR) markers segregating into seven linkage groups was constructed. Three QTLs (ARN3.1, ARN5.1, and ARN6.1) distributed on chromosomes 3, 5, and 6 were identified by composite interval mapping. The major-effect QTL, ARN6.1, located between SSR12898 and SSR04751, was the only locus detected in three seasons, with least likelihood (LOD) scores of 8.8, 10.4, and 9.5 and account for 17.6, 24, and 19.8% of the phenotypic variance, respectively. Using five additional single nucleotide polymorphism (SNP) makers, the ARN6.1 was narrowed down to a 0.79 Mb interval franked by SSR12898 and SNP25558853. Illumina RNA-sequencing data generated on hypocotyls of two parents 48 h after waterlogging treatment revealed 15 genes in the 0.79 Mb interval were differentially expressed, including Csa6G503880 encoding a salicylic acid methyl transferase-like protein, Csa6G504590 encoding a cytochrome P450 monooxygenase, and Csa6G505230 encoding a heavy metal-associated protein. Our findings shed light on the genetic architecture underlying adventitious rooting during waterlogging stress in cucumber, and provide a list of potential gene targets for further elucidating waterlogging tolerance in plants.
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Affiliation(s)
- Xuewen Xu
- School of Horticulture and Plant Protection, Yangzhou University, Yangzhou, 225009, China
| | - Jing Ji
- School of Horticulture and Plant Protection, Yangzhou University, Yangzhou, 225009, China
| | - Qiang Xu
- School of Horticulture and Plant Protection, Yangzhou University, Yangzhou, 225009, China
| | - Xiaohua Qi
- School of Horticulture and Plant Protection, Yangzhou University, Yangzhou, 225009, China
| | - Xuehao Chen
- School of Horticulture and Plant Protection, Yangzhou University, Yangzhou, 225009, China.
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Libao C, Runzhi J, Mengli Y, Liangjun L, Shuyan L. A comparative proteomic analysis for adventitious root formation in lotus root (Nelumbo nucifera Gaertn). Z NATURFORSCH C 2016; 72:181-196. [DOI: 10.1515/znc-2016-0170] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2016] [Accepted: 10/14/2016] [Indexed: 12/11/2022]
Abstract
Abstract
Adventitious roots (ARs) directly affect lotus seedling growth and product quality because principal root is not well developed. However, the details of AR formation at the molecular level have not been determined in lotus. Therefore, three stages were chosen to identify the change of proteins abundant during rhizome formation, using isobaric tags for relative and absolute quantization coupled with liquid chromatography–tandem mass spectrometry to gain insight into the molecular mechanisms involved in AR formation. We totally obtained 323,375 spectra during AR formation. After filtering to eliminate low-scoring spectra, 66,943 spectra, including 53,106 unique spectra, were identified. These unique spectra matched 28,905 peptides, including 24,992 unique peptides, which were assembled into 6686 proteins. In the C0/C1 and C1/C2 stages, 66 and 32 proteins showed enhanced abundance, and 173 and 73 proteins showed decreased abundance, respectively. Seventeen important AR formation-related proteins from the three stages were identified, and the expressions of nine genes from the above-identified proteins were assessed by qRT-PCR. This article provides a comprehensive understanding of the changes in metabolism during AR formation, and is helpful to accelerate the progress of breeding in fulture in lotus root.
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Affiliation(s)
- Cheng Libao
- School of Horticulture and Plant Protection, Yangzhou University , Jiangsu , P. R. China
| | - Jiang Runzhi
- School of Horticulture and Plant Protection, Yangzhou University , Jiangsu , P. R. China
| | - Yang Mengli
- School of Horticulture and Plant Protection, Yangzhou University , Jiangsu , P. R. China
| | - Li Liangjun
- School of Horticulture and Plant Protection, Yangzhou University , Jiangsu , P. R. China
| | - Li Shuyan
- College of Guangling, Yangzhou University , Jiangsu , P. R. China
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Dawood T, Yang X, Visser EJW, Te Beek TAH, Kensche PR, Cristescu SM, Lee S, Floková K, Nguyen D, Mariani C, Rieu I. A Co-Opted Hormonal Cascade Activates Dormant Adventitious Root Primordia upon Flooding in Solanum dulcamara. PLANT PHYSIOLOGY 2016; 170:2351-64. [PMID: 26850278 PMCID: PMC4825138 DOI: 10.1104/pp.15.00773] [Citation(s) in RCA: 58] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2015] [Accepted: 02/04/2016] [Indexed: 05/17/2023]
Abstract
Soil flooding is a common stress factor affecting plants. To sustain root function in the hypoxic environment, flooding-tolerant plants may form new, aerenchymatous adventitious roots (ARs), originating from preformed, dormant primordia on the stem. We investigated the signaling pathway behind AR primordium reactivation in the dicot species Solanum dulcamara Transcriptome analysis indicated that flooding imposes a state of quiescence on the stem tissue, while increasing cellular activity in the AR primordia. Flooding led to ethylene accumulation in the lower stem region and subsequently to a drop in abscisic acid (ABA) level in both stem and AR primordia tissue. Whereas ABA treatment prevented activation of AR primordia by flooding, inhibition of ABA synthesis was sufficient to activate them in absence of flooding. Together, this reveals that there is a highly tissue-specific response to reduced ABA levels. The central role for ABA in the response differentiates the pathway identified here from the AR emergence pathway known from rice (Oryza sativa). Flooding and ethylene treatment also induced expression of the polar auxin transporter PIN2, and silencing of this gene or chemical inhibition of auxin transport inhibited primordium activation, even though ABA levels were reduced. Auxin treatment, however, was not sufficient for AR emergence, indicating that the auxin pathway acts in parallel with the requirement for ABA reduction. In conclusion, adaptation of S. dulcamara to wet habitats involved co-option of a hormonal signaling cascade well known to regulate shoot growth responses, to direct a root developmental program upon soil flooding.
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Affiliation(s)
- Thikra Dawood
- Department of Molecular Plant Physiology, Institute for Water and Wetland Research (T.D., X.Y., D.N., C.M., I.R.), Department of Experimental Plant Ecology, Institute for Water and Wetland Research (E.J.W.V.), Center for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences (P.R.K.), and Department of Molecular and Laser Physics, Institute for Molecules and Materials (S.M.C.), Radboud University, 6500 GL Nijmegen, The Netherlands;Netherlands Bioinformatics Centre, 6525 GA Nijmegen, The Netherlands (T.A.H.t.B.);Laboratory of Plant Physiology, Plant Sciences, Wageningen University, 6708 PB Wageningen, The Netherlands (S.L., K.F.); andGyeongsangbuk-Do Agricultural Research and Extension Services, 136 Gil-14, Chilgokiungang-Daero, Daegu, South Korea (S.L.)
| | - Xinping Yang
- Department of Molecular Plant Physiology, Institute for Water and Wetland Research (T.D., X.Y., D.N., C.M., I.R.), Department of Experimental Plant Ecology, Institute for Water and Wetland Research (E.J.W.V.), Center for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences (P.R.K.), and Department of Molecular and Laser Physics, Institute for Molecules and Materials (S.M.C.), Radboud University, 6500 GL Nijmegen, The Netherlands;Netherlands Bioinformatics Centre, 6525 GA Nijmegen, The Netherlands (T.A.H.t.B.);Laboratory of Plant Physiology, Plant Sciences, Wageningen University, 6708 PB Wageningen, The Netherlands (S.L., K.F.); andGyeongsangbuk-Do Agricultural Research and Extension Services, 136 Gil-14, Chilgokiungang-Daero, Daegu, South Korea (S.L.)
| | - Eric J W Visser
- Department of Molecular Plant Physiology, Institute for Water and Wetland Research (T.D., X.Y., D.N., C.M., I.R.), Department of Experimental Plant Ecology, Institute for Water and Wetland Research (E.J.W.V.), Center for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences (P.R.K.), and Department of Molecular and Laser Physics, Institute for Molecules and Materials (S.M.C.), Radboud University, 6500 GL Nijmegen, The Netherlands;Netherlands Bioinformatics Centre, 6525 GA Nijmegen, The Netherlands (T.A.H.t.B.);Laboratory of Plant Physiology, Plant Sciences, Wageningen University, 6708 PB Wageningen, The Netherlands (S.L., K.F.); andGyeongsangbuk-Do Agricultural Research and Extension Services, 136 Gil-14, Chilgokiungang-Daero, Daegu, South Korea (S.L.)
| | - Tim A H Te Beek
- Department of Molecular Plant Physiology, Institute for Water and Wetland Research (T.D., X.Y., D.N., C.M., I.R.), Department of Experimental Plant Ecology, Institute for Water and Wetland Research (E.J.W.V.), Center for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences (P.R.K.), and Department of Molecular and Laser Physics, Institute for Molecules and Materials (S.M.C.), Radboud University, 6500 GL Nijmegen, The Netherlands;Netherlands Bioinformatics Centre, 6525 GA Nijmegen, The Netherlands (T.A.H.t.B.);Laboratory of Plant Physiology, Plant Sciences, Wageningen University, 6708 PB Wageningen, The Netherlands (S.L., K.F.); andGyeongsangbuk-Do Agricultural Research and Extension Services, 136 Gil-14, Chilgokiungang-Daero, Daegu, South Korea (S.L.)
| | - Philip R Kensche
- Department of Molecular Plant Physiology, Institute for Water and Wetland Research (T.D., X.Y., D.N., C.M., I.R.), Department of Experimental Plant Ecology, Institute for Water and Wetland Research (E.J.W.V.), Center for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences (P.R.K.), and Department of Molecular and Laser Physics, Institute for Molecules and Materials (S.M.C.), Radboud University, 6500 GL Nijmegen, The Netherlands;Netherlands Bioinformatics Centre, 6525 GA Nijmegen, The Netherlands (T.A.H.t.B.);Laboratory of Plant Physiology, Plant Sciences, Wageningen University, 6708 PB Wageningen, The Netherlands (S.L., K.F.); andGyeongsangbuk-Do Agricultural Research and Extension Services, 136 Gil-14, Chilgokiungang-Daero, Daegu, South Korea (S.L.)
| | - Simona M Cristescu
- Department of Molecular Plant Physiology, Institute for Water and Wetland Research (T.D., X.Y., D.N., C.M., I.R.), Department of Experimental Plant Ecology, Institute for Water and Wetland Research (E.J.W.V.), Center for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences (P.R.K.), and Department of Molecular and Laser Physics, Institute for Molecules and Materials (S.M.C.), Radboud University, 6500 GL Nijmegen, The Netherlands;Netherlands Bioinformatics Centre, 6525 GA Nijmegen, The Netherlands (T.A.H.t.B.);Laboratory of Plant Physiology, Plant Sciences, Wageningen University, 6708 PB Wageningen, The Netherlands (S.L., K.F.); andGyeongsangbuk-Do Agricultural Research and Extension Services, 136 Gil-14, Chilgokiungang-Daero, Daegu, South Korea (S.L.)
| | - Sangseok Lee
- Department of Molecular Plant Physiology, Institute for Water and Wetland Research (T.D., X.Y., D.N., C.M., I.R.), Department of Experimental Plant Ecology, Institute for Water and Wetland Research (E.J.W.V.), Center for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences (P.R.K.), and Department of Molecular and Laser Physics, Institute for Molecules and Materials (S.M.C.), Radboud University, 6500 GL Nijmegen, The Netherlands;Netherlands Bioinformatics Centre, 6525 GA Nijmegen, The Netherlands (T.A.H.t.B.);Laboratory of Plant Physiology, Plant Sciences, Wageningen University, 6708 PB Wageningen, The Netherlands (S.L., K.F.); andGyeongsangbuk-Do Agricultural Research and Extension Services, 136 Gil-14, Chilgokiungang-Daero, Daegu, South Korea (S.L.)
| | - Kristýna Floková
- Department of Molecular Plant Physiology, Institute for Water and Wetland Research (T.D., X.Y., D.N., C.M., I.R.), Department of Experimental Plant Ecology, Institute for Water and Wetland Research (E.J.W.V.), Center for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences (P.R.K.), and Department of Molecular and Laser Physics, Institute for Molecules and Materials (S.M.C.), Radboud University, 6500 GL Nijmegen, The Netherlands;Netherlands Bioinformatics Centre, 6525 GA Nijmegen, The Netherlands (T.A.H.t.B.);Laboratory of Plant Physiology, Plant Sciences, Wageningen University, 6708 PB Wageningen, The Netherlands (S.L., K.F.); andGyeongsangbuk-Do Agricultural Research and Extension Services, 136 Gil-14, Chilgokiungang-Daero, Daegu, South Korea (S.L.)
| | - Duy Nguyen
- Department of Molecular Plant Physiology, Institute for Water and Wetland Research (T.D., X.Y., D.N., C.M., I.R.), Department of Experimental Plant Ecology, Institute for Water and Wetland Research (E.J.W.V.), Center for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences (P.R.K.), and Department of Molecular and Laser Physics, Institute for Molecules and Materials (S.M.C.), Radboud University, 6500 GL Nijmegen, The Netherlands;Netherlands Bioinformatics Centre, 6525 GA Nijmegen, The Netherlands (T.A.H.t.B.);Laboratory of Plant Physiology, Plant Sciences, Wageningen University, 6708 PB Wageningen, The Netherlands (S.L., K.F.); andGyeongsangbuk-Do Agricultural Research and Extension Services, 136 Gil-14, Chilgokiungang-Daero, Daegu, South Korea (S.L.)
| | - Celestina Mariani
- Department of Molecular Plant Physiology, Institute for Water and Wetland Research (T.D., X.Y., D.N., C.M., I.R.), Department of Experimental Plant Ecology, Institute for Water and Wetland Research (E.J.W.V.), Center for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences (P.R.K.), and Department of Molecular and Laser Physics, Institute for Molecules and Materials (S.M.C.), Radboud University, 6500 GL Nijmegen, The Netherlands;Netherlands Bioinformatics Centre, 6525 GA Nijmegen, The Netherlands (T.A.H.t.B.);Laboratory of Plant Physiology, Plant Sciences, Wageningen University, 6708 PB Wageningen, The Netherlands (S.L., K.F.); andGyeongsangbuk-Do Agricultural Research and Extension Services, 136 Gil-14, Chilgokiungang-Daero, Daegu, South Korea (S.L.)
| | - Ivo Rieu
- Department of Molecular Plant Physiology, Institute for Water and Wetland Research (T.D., X.Y., D.N., C.M., I.R.), Department of Experimental Plant Ecology, Institute for Water and Wetland Research (E.J.W.V.), Center for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences (P.R.K.), and Department of Molecular and Laser Physics, Institute for Molecules and Materials (S.M.C.), Radboud University, 6500 GL Nijmegen, The Netherlands;Netherlands Bioinformatics Centre, 6525 GA Nijmegen, The Netherlands (T.A.H.t.B.);Laboratory of Plant Physiology, Plant Sciences, Wageningen University, 6708 PB Wageningen, The Netherlands (S.L., K.F.); andGyeongsangbuk-Do Agricultural Research and Extension Services, 136 Gil-14, Chilgokiungang-Daero, Daegu, South Korea (S.L.)
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Steffens B, Rasmussen A. The Physiology of Adventitious Roots. PLANT PHYSIOLOGY 2016; 170:603-17. [PMID: 26697895 PMCID: PMC4734560 DOI: 10.1104/pp.15.01360] [Citation(s) in RCA: 238] [Impact Index Per Article: 29.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2015] [Accepted: 11/27/2015] [Indexed: 05/17/2023]
Abstract
Adventitious roots are plant roots that form from any nonroot tissue and are produced both during normal development (crown roots on cereals and nodal roots on strawberry [Fragaria spp.]) and in response to stress conditions, such as flooding, nutrient deprivation, and wounding. They are important economically (for cuttings and food production), ecologically (environmental stress response), and for human existence (food production). To improve sustainable food production under environmentally extreme conditions, it is important to understand the adventitious root development of crops both in normal and stressed conditions. Therefore, understanding the regulation and physiology of adventitious root formation is critical for breeding programs. Recent work shows that different adventitious root types are regulated differently, and here, we propose clear definitions of these classes. We use three case studies to summarize the physiology of adventitious root development in response to flooding (case study 1), nutrient deficiency (case study 2), and wounding (case study 3).
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Affiliation(s)
- Bianka Steffens
- Plant Physiology, Philipps University, 35043 Marburg, Germany (B.S.); andDivision of Plant and Crop Science, University of Nottingham, Sutton Bonington LE12 5RD, United Kingdom (A.R.)
| | - Amanda Rasmussen
- Plant Physiology, Philipps University, 35043 Marburg, Germany (B.S.); andDivision of Plant and Crop Science, University of Nottingham, Sutton Bonington LE12 5RD, United Kingdom (A.R.)
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Xu X, Ji J, Ma X, Xu Q, Qi X, Chen X. Comparative Proteomic Analysis Provides Insight into the Key Proteins Involved in Cucumber ( Cucumis sativus L.) Adventitious Root Emergence under Waterlogging Stress. FRONTIERS IN PLANT SCIENCE 2016; 7:1515. [PMID: 27790230 PMCID: PMC5062059 DOI: 10.3389/fpls.2016.01515] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2016] [Accepted: 09/26/2016] [Indexed: 05/20/2023]
Abstract
Waterlogging is a common abiotic stress in both natural and agricultural systems, and it primarily affects plant growth by the slow oxygen diffusion in water. To sustain root function in the hypoxic environment, a key adaptation for waterlogging tolerant plants is the formation of adventitious roots (ARs). We found that cucumber waterlogging tolerant line Zaoer-N seedlings adapt to waterlogging stress by developing a larger number of ARs in hypocotyls, while almost no AR is generated in sensitive line Pepino. To understand the molecular mechanisms underlying AR emergence, the iTRAQ-based quantitative proteomics approach was employed to map the proteomes of hypocotyls cells of the Zaoer-N and Pepino under control and waterlogging conditions. A total of 5508 proteins were identified and 146 were differentially regulated proteins (DRPs), of which 47 and 56 DRPs were specific to tolerant and sensitive line, respectively. In the waterlogged Zaoer-N hypocotyls, DRPs related to alcohol dehydrogenases (ADH), 1-aminocyclopropane-1-carboxylicacid oxidases, peroxidases, 60S ribosomal proteins, GSDL esterases/lipases, histone deacetylases, and histone H5 and were strongly overrepresented to manage the energy crisis, promote ethylene release, minimize oxidative damage, mobilize storage lipids, and stimulate cell division, differentiation and growth. The evaluations of ethylene production, ADH activity, pyruvate decarboxylase (PDC) activity and ethanol production were in good agreement with the proteomic results. qRT-PCR analysis of the corresponding 146 genes further confirmed the accuracy of the observed protein abundance. These findings shed light on the mechanisms underlying waterlogging triggered cucumber ARs emergence, and provided valuable information for the breeding of cucumber with enhanced tolerance to waterlogging.
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Phukan UJ, Mishra S, Shukla RK. Waterlogging and submergence stress: affects and acclimation. Crit Rev Biotechnol 2015; 36:956-66. [PMID: 26177332 DOI: 10.3109/07388551.2015.1064856] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Submergence, whether partial or complete, imparts some serious consequences on plants grown in flood prone ecosystems. Some plants can endure these conditions by embracing various survival strategies, including morphological adaptations and physiological adjustments. This review summarizes recent progress made in understanding of the stress and the acclimation responses of plants under waterlogged or submerged conditions. Waterlogging and submergence are often associated with hypoxia development, which may trigger various morphological traits and cellular acclimation responses. Ethylene, abscisic acid, gibberellic acid and other hormones play a crucial role in the survival process which is controlled genetically. Effects at the cellular level, including ATP management, starch metabolism, elemental toxicity, role of transporters and redox status have been explained. Transcriptional and hormonal interplay during this stress may provide some key aspects in understanding waterlogging and submergence tolerance. The level and degree of tolerance may vary depending on species or climatic variations which need to be studied for a proper understanding of waterlogging stress at the global level. The exploration of regulatory pathways and interplay in model organisms such as Arabidopsis and rice would provide valuable resources for improvement of economically and agriculturally important plants in waterlogging affected areas.
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Affiliation(s)
- Ujjal J Phukan
- a Biotechnology Division (CSIR-CIMAP) , Central Institute of Medicinal and Aromatic Plants (CSIR-CIMAP) , Lucknow , Uttar Pradesh , India
| | - Sonal Mishra
- a Biotechnology Division (CSIR-CIMAP) , Central Institute of Medicinal and Aromatic Plants (CSIR-CIMAP) , Lucknow , Uttar Pradesh , India
| | - Rakesh Kumar Shukla
- a Biotechnology Division (CSIR-CIMAP) , Central Institute of Medicinal and Aromatic Plants (CSIR-CIMAP) , Lucknow , Uttar Pradesh , India
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