Identifying environmental drivers of greenhouse gas emissions under warming and reduced rainfall in boreal–temperate forests

Soil warming-induced reduction in water content enhanced methane uptake at different soil depths in a subtropical forest

Global warming can significantly impact soil CH4 uptake in subtropical forests due to changes in soil moisture, temperature sensitivity of methane-oxidizing bacteria (MOB), and shifts in microbial communities. However, the specific effects of climate warming and the underlying mechanisms on soil CH4 uptake at different soil depths remain poorly understood. To address this knowledge gap, we conducted a soil warming experiment (+4 °C) in a natural forest. From August 2020 to October 2021, we measured soil temperature, soil moisture, and CH4 uptake rates at four different soil depths: 0-10 cm, 10-20 cm, 20-40 cm, and 40-60 cm. Additionally, we assessed the soil MOB community structure and pmoA gene (with qPCR) at the 0-10 and 10-20 cm depths. Our findings revealed that warming significantly enhanced soil net CH4 uptake rate by 12.28 %, 29.51 %, and 61.05 % in the 0-10, 20-40, and 40-60 cm soil layers, respectively. The warming also led to reduced soil moisture levels, with more pronounced reductions observed at the 20-40 cm depth compared to the 0-20 cm depth. At the 0-10 cm depth, warming increased the relative abundance of upland soil cluster α (a type of MOB) and decreased the relative abundance of Methylocystis, but it did not significantly increase the pmoA gene copies. Our structural equation model analysis indicated that warming directly regulated soil CH4 uptake rate through the decrease in soil moisture, rather than through changes in the pmoA gene and MOB community structure at the 0-20 cm depth. In summary, our results demonstrate that warming enhances soil CH4 uptake at different depths, with soil moisture playing a crucial role in this process. Under warming conditions, the drier soil pores allow for better CH4 penetration, thereby promoting more efficient activity of MOB.

Biochar's dual role in greenhouse gas emissions: Nitrogen fertilization dependency and mitigation potential

Biochar was popularly used for reducing greenhouse gas (GHG) emissions in vegetable production, but using biochar does not necessarily guarantee a reduction in GHG emissions. Herein, it's meaningful to elucidate the intricate interplay among biochar properties, soil characteristics, and GHG emissions in vegetable production to provide valuable insights for informed and effective mitigation strategies. Therefore, in current research, a meta-analysis of 43 publications was employed to address these issues. The boost-regression analysis results indicated that the performance of biochar in inhibiting N2O emissions was most affected by the N application rate both in high and low N application conditions. Besides, biochar had dual roles and showed well performance in reducing GHG emissions under low N input (≤300 kg N ha-1), while having the opposite effect during high N input (>300 kg N ha-1). Specifically, applying biochar under low N fertilization input could obviously reduce soil N2O emissions, CO2 emissions, and CH4 emissions by 18.7 %, 17.9 %, and 16.9 %, respectively. However, the biochar application under high N fertilization input significantly (P < 0.05) increased soil N2O emissions, CO2 emissions, and CH4 emissions by 39.7 %, 43.0 %, and 27.7 %, respectively. Except for the N application rate, the soil pH, SOC, biochar C/N ratio, biochar pH, and biochar pyrolysis temperature are also the key factors affecting the control of GHG emissions in biochar-amended soils. The findings of this study will contribute to deeper insights into the potential application of biochar in regulating GHG under consideration of N input, offering scientific evidence and guidance for sustainable agriculture management.

Effects of whole-soil warming on CH4 and N2 O fluxes in an alpine grassland

Global climate warming could affect the methane (CH4 ) and nitrous oxide (N2 O) fluxes between soils and the atmosphere, but how CH4 and N2 O fluxes respond to whole-soil warming is unclear. Here, we for the first time investigated the effects of whole-soil warming on CH4 and N2 O fluxes in an alpine grassland ecosystem on the Tibetan Plateau, and also studied the effects of experimental warming on CH4 and N2 O fluxes across terrestrial ecosystems through a global-scale meta-analysis. The whole-soil warming (0-100 cm, +4°C) significantly elevated soil N2 O emission by 101%, but had a minor effect on soil CH4 uptake. However, the meta-analysis revealed that experimental warming did not significantly alter CH4 and N2 O fluxes, and it may be that most field warming experiments could only heat the surface soils. Moreover, the warming-induced higher plant litter and available N in soils may be the main reason for the higher N2 O emission under whole-soil warming in the alpine grassland. We need to pay more attention to the long-term response of greenhouse gases (including CH4 and N2 O fluxes) from different soil depths to whole-soil warming over year-round, which could help us more accurately assess and predict the ecosystem-climate feedback under realistic warming scenarios in the future.

Vegetation type, not the legacy of warming, modifies the response of microbial functional genes and greenhouse gas fluxes to drought in Oro-Arctic and alpine regions

Climate warming and summer droughts alter soil microbial activity, affecting greenhouse gas (GHG) emissions in Arctic and alpine regions. However, the long-term effects of warming, and implications for future microbial resilience, are poorly understood. Using one alpine and three Arctic soils subjected to in situ long-term experimental warming, we simulated drought in laboratory incubations to test how microbial functional-gene abundance affects fluxes in three GHGs: carbon dioxide, methane, and nitrous oxide. We found that responses of functional gene abundances to drought and warming are strongly associated with vegetation type and soil carbon. Our sites ranged from a wet, forb dominated, soil carbon-rich systems to a drier, soil carbon-poor alpine site. Resilience of functional gene abundances, and in turn methane and carbon dioxide fluxes, was lower in the wetter, carbon-rich systems. However, we did not detect an effect of drought or warming on nitrous oxide fluxes. All gene-GHG relationships were modified by vegetation type, with stronger effects being observed in wetter, forb-rich soils. These results suggest that impacts of warming and drought on GHG emissions are linked to a complex set of microbial gene abundances and may be habitat-specific.

Separating the effects of air and soil temperature on silver birch. Part I. Does soil temperature or resource competition determine the timing of root growth?

The aboveground parts of boreal forest trees mostly grow earlier, and the roots later, in the growing season. We aimed to experimentally test whether the extrinsic driver of soil temperature or the intrinsic driver (resource competition between plant parts) is a more important control for the root and shoot growth of silver birch (Betula pendula Roth) seedlings. Sixteen two-year-old seedlings were grown in controlled environment rooms for two simulated growing seasons (GS1, GS2). In GS1, all the seedlings were acclimatized under the same conditions, but in GS2, the soil temperature treatments were: (i) constant 10 °C (Cool); (ii) constant 18 °C (Warm); (iii) early growing season at 10 °C, switched to 18 °C later (Early Cool Late Warm, ECLW) and (iv) early growing season 18 °C, switched to 10 °C later (Early Warm Late Cool, EWLC). The treatments did not affect growth allocation between shoots and roots. Warm soil benefitted shoot elongation as it slowed down in EWLC and accelerated in ECLW after the soil temperature switch. However, whole-tree biomasses were similar to Cool and the seedlings grew largest in Warm. Phenology was not strongly affected by soil temperature, and root and shoot growth did not usually peak simultaneously. Short root mortality increased strongly in ECLW and decreased in EWLC after the soil temperature switch. Long root longevity was not significantly affected but long root growth ceased earliest in ECLW. Soil warming increased foliar nutrient contents. Growth dynamics were not solely driven by soil temperature, but resource competition also played a significant role. The study showed the importance of soil temperature for fine root dynamics not only through root growth but also via root mortality, as soil warming increased mortality even more than growth. Soil temperature has complex effects on tree and soil functioning, which further affects carbon dynamics in forest ecosystems that have a climate feedback.

Alfalfa-grass mixtures reduce greenhouse gas emissions and net global warming potential while maintaining yield advantages over monocultures

Improving forage productivity with lower greenhouse gas (GHG) emissions from limited grassland has been a hotspot of interest in global agricultural production. In this study, we analyzed the effects of grasses (tall fescue, smooth bromegrass), legume (alfalfa), and alfalfa-grass (alfalfa + smooth bromegrass and alfalfa + tall fescue) mixtures on GHG emissions, net global warming potential (Net GWP), yield-based greenhouse gas intensity (GHGI), soil chemical properties and forage productivity in cultivated grassland in northwest China during 2020-2021. Our results demonstrated that alfalfa-grass mixtures significantly improved forage productivity. The highest total dry matter yield (DMY) during 2020 and 2021 was obtained from alfalfa-tall fescue (11,311 and 13,338 kg ha^-1) and alfalfa-smooth bromegrass mixtures (10,781 and 12,467 kg ha^-1). The annual cumulative GHG emissions from mixtures were lower than alfalfa monoculture. Alfalfa-grass mixtures significantly reduced GHGI compared with the grass or alfalfa monocultures. Furthermore, results indicated that grass, alfalfa and alfalfa-grass mixtures differentially affected soil chemical properties. Lower soil pH and C/N ratio were recorded in alfalfa monoculture. Alfalfa and mixtures increased soil organic carbon (SOC) and soil total nitrogen (STN) contents. Importantly, alfalfa-grass mixtures are necessary for improving forage productivity and mitigating the GHG emissions in this region. In conclusion, the alfalfa-tall fescue mixture lowered net GWP and GHGI in cultivated grassland while maintaining high forage productivity. These advanced agricultural practices could contribute to the development of climate-sustainable grassland production in China.

Litter-derived nitrogen reduces methane uptake in tropical rainforest soils

Litter comprises a major nutrient source when decomposed via soil microbes and functions as subtract that limits gas exchange between soil and atmosphere, thereby restricting methane (CH4) uptake in soils. However, the impact and inherent mechanism of litter and its decomposition on CH4 uptake in soils remains unknown in forest. Therefore, to declare the mechanisms of litter input and decomposition effect on the soil CH4 flux in forest, this study performed a litter-removal experiment in a tropical rainforest, and investigated the effects of litter input and decomposition on the CH4 flux among forest ecosystems through a literature review. Cumulative annual CH4 flux was -3.30 kg CH4-C ha^-1 y^-1. The litter layer decreased annual accumulated CH4 uptake by 8% which greater in the rainy season than the dry season in the tropical rainforest. Litter decomposition and the input of carbon and nitrogen in litter biomass reduced CH4 uptake significantly and the difference in CH4 flux between treatment with litter and without litter was negatively associated with N derived from litter input. Based on the literature review about litter effect on soil CH4 around world forests, the effect of litter dynamics on CH4 uptake was regulated by litter-derived nitrogen input and the amount soil inorganic nitrogen content. Our results suggest that nitrogen input via litter decomposition, which increased with temperature, caused a decline in CH4 uptake by forest soils, which could weaken the contribution of the forest in mitigating global warming.

Effects of warming and precipitation changes on soil GHG fluxes: A meta-analysis

Increased atmospheric greenhouse gas (GHG) concentrations resulting from human activities lead to climate change, including global warming and changes of precipitation patterns worldwide, which in turn would have profound effects on soil GHG emissions. Nonetheless, the impact of the combination of warming and precipitation changes on all three major biogenic GHGs (CO₂, CH₄ and N₂O) has not been synthesized, to build a global synthesis. In this study, we conducted a global meta-analysis concerning the effects of warming and precipitation changes and their interactions on soil GHG fluxes and explored the potential factors by synthesizing 39 published studies worldwide. Across all studies, combination of warming and increased precipitation showed more significant effect on CO₂ emissions (24.0%) than the individual effect of warming (8.6%) and increased precipitation (20.8%). Additionally, warming increased N₂O emissions (28.3%), and decreased precipitation reduced CO₂ (-8.5%) and N₂O (-7.1%) emissions, while the combination of warming and decreased precipitation also showed negative effects on CO₂ (-7.6%) and N₂O (-14.6%) emissions. The interactive effects of warming and precipitation changes on CO₂ emissions were usually additive, whereas CO₂ and N₂O emissions were dominated by synergistic effects under warming and decreased precipitation. Moreover, climate, biome, duration, and season of manipulations also affected soil GHG fluxes as well. Furthermore, we also found the threshold effects of changes in soil temperature and moisture on CO₂ and N₂O emissions under warming and precipitation changes. The findings indicate that both warming and precipitation changes substantially affect GHG emissions and highlight the urgent need to study the effect of the combination of warming and precipitation changes on C and N cycling under ongoing climate change.

Will climate warming of terrestrial ecosystem contribute to increase soil greenhouse gas fluxes in plot experiment? A global meta-analysis

One of the main manifestations of global climate change is its profound impact on the emission of greenhouse gases from terrestrial soil. Numerous field warming experiments have explored the effects of different temperature rise intensities and durations on soil greenhouse gas fluxes in the growing season of different terrestrial ecosystems. However, the results were inconsistent due to the variations in vegetation, soil, and climatic conditions in different ecosystems. In the present work, we carried meta-analysis to synthesize 99 datasets from 52 field warming experiments in growing seasons of terrestrial ecosystems to evaluate the response of soil greenhouse gas fluxes to global warming. The results showed that warming greatly stimulated soil CO₂ in temperate forest and farmland by 12.64% and 25.57%, respectively, significantly increased soil N₂O emissions in grassland (27.23%), farmland (44.33%), and shrubland (223.36%), and increased soil CH₄ uptake by 57.81% in grasslands. However, no significant impact on the greenhouse gas fluxes in other ecosystems was observed. Generally, short-and medium-term (≤ 3 years) warming can promote soil greenhouse gas fluxes. Also, low temperature and low-medium temperature (≤ 2 °C) significantly promoted N₂O emission and CH₄ absorption, and medium temperature (2-4 °C) considerably assisted CO₂ flux, but high temperature (> 4 °C) had no significant effect on greenhouse gas flux. Our results demonstrated that soil greenhouse gas fluxes in terrestrial ecosystems during the growing season do not increase linearly with the increasing climate warming, and it is still uncertain whether there is acclimatization to long-term climate warming.

Changes in precipitation regime lead to acceleration of the N cycle and dramatic N2O emission

Alpine meadows on the Qinghai-Tibetan Plateau are sensitive to climate change. The precipitation regime in this region has undergone major changes, "repackaging" precipitation from more frequent, smaller events to less frequent, larger events. Nitrous oxide (N₂O) is an important indicator of responses to global change in alpine meadow ecosystems. However, little information is available describing the mechanisms driving the response of N₂O emissions to changes in the precipitation regime. In this study, a manipulative field experiment was conducted to investigate N₂O flux, soil properties, enzyme activity, and gene abundance in response to severe and moderate changes in precipitation regime over two years. Severe changes in precipitation regime led to a 12.6-fold increase in N₂O fluxes (0.0068 ± 0.0018 mg m^-2 h^-1) from Zoige alpine meadows relative to natural conditions (0.0005 ± 0.0029 mg m^-2 h^-1). In addition, severe changes in precipitation regime significantly suppressed the activities of leucine amino peptidase (LAP) and peroxidase (PEO), affected ecoenzymatic stoichiometry, and increased the abundances of gdhA, narI and nirK genes, which significantly promoted organic nitrogen (N) decomposition, denitrification, and anammox processes. The increase in abundance of these genes could be ascribed to changes in the abundance of several dominant bacterial taxa (i.e., Actinobacteria and Proteobacteria) as a result of the altered precipitation regime. Decreases in nitrate and soil moisture caused by severe changes in precipitation may exacerbate N limitation and water deficit, lead to a suppression of soil enzyme activity, and change the structure of microorganism community. The N cycle of the alpine meadow ecosystem may accelerate by increasing the abundance of key N functional genes. This would, in turn, lead to increased N₂O emission. This study provided insights into how precipitation regimes changes affect N cycling, and may also improve prediction of N₂O fluxes in response to changes in precipitation regime.

Differential effects of altered precipitation regimes on soil carbon cycles in arid versus humid terrestrial ecosystems

Changes in precipitation regimes have significant effects on soil carbon (C) cycles; however, these effects may vary in arid versus humid areas. Additionally, the corresponding details of soil C cycles in response to altered precipitation regimes have not been well documented. Here, a meta-analysis was performed using 845 pairwise observations (control vs. increased or decreased precipitation) from 214 published articles to quantify the responses of the input process of exogenous C, the contents of various forms of C in soil, and the soil-atmosphere C fluxes relative to increased or decreased precipitation. The results showed that the effects of altered precipitation regimes did not differ between rainfall and snowfall. Increased precipitation significantly enhanced the soil C inputs, pools and outputs by 18.17%, 18.50%, and 21.04%, respectively, while decreased precipitation led to a significant decline in these soil C parameters by 10.18%, 9.96%, and 17.98%, respectively. The effects of increased precipitation on soil C cycles were more significant in arid areas (where mean annual precipitation, MAP <500 mm), but the effects of decreased precipitation were more significant in humid areas (where MAP ≥500 mm), indicating that the original MAP partially determined the responses of the soil C cycles to altered precipitation regimes. This study implies that for the same of precipitation variation, soil C cycles respond at different magnitudes: not only should the direction (decrease vs. increase) be counted but also the region (arid vs. humid) should be considered. These results deepened our understanding on regional differentiation in soil C cycles under climate change scenarios.

Soil aeration rather than methanotrophic community drives methane uptake under drought in a subtropical forest

Little information is available about the effects of drought on soil methane (CH₄) uptake and the underlying feedback of the soil microbial community in forest biomes. More importantly, a meta-analysis of the current literature on this topic revealed that there are virtually no data available in subtropical forests. To fill the abovementioned knowledge gap, we carried out a 3-year investigation of in situ CH₄ efflux under drought in a subtropical forest, and found that drought significantly increased soil CH₄ uptake (P < 0.001). However, drought did not change oxidation potentials and abundances of methanotrophs, and similar methanotrophic communities were observed between the drought and ambient control sites based on metagenomic sequencing analysis. Active methanotrophic communities were dominated by the genus Methylosinus based on DNA stable-isotope probing analysis. Structural equation model analysis indicated that direct drought-derived pathway, i.e., increasing soil aerations, outweighs the indirect pathway, i.e., altering methanotrophic communities and activities, and plays a predominant role in driving soil CH₄ uptake in forest ecosystems. To our knowledge, our work is the first study to investigate the effects of drought on in situ CH₄ efflux and the underlying microbial mechanisms in subtropical forests.

Effects of Soil Moisture and Temperature on Microbial Regulation of Methane Fluxes in a Poplar Plantation

Improved mechanistic understanding of soil methane (CH4) exchange responses to shifts in soil moisture and temperature in forest ecosystems is pivotal to reducing uncertainty in estimates of the soil-atmospheric CH4 budget under climate change. We investigated the mechanism behind the effects of soil moisture and temperature shifts on soil CH4 fluxes under laboratory conditions. Soils from the Huai River Basin in China, an area that experiences frequent hydrological shifts, were sampled from two consecutive depths (0–20 and 20–50 cm) and incubated for 2 weeks under different combinations of soil moisture and temperature. Soils from both depths showed an increase in soil moisture and temperature-dependent cumulative CH4 fluxes. CH4 production rates incubated in different moisture and temperature in surface soil ranged from 1.27 to 2.18 ng g−1 d−1, and that of subsurface soil ranged from 1.18 to 2.34 ng g−1 d−1. The Q10 range for soil CH4 efflux rates was 1.04–1.37. For surface soils, the relative abundance and diversity of methanotrophs decreased with moisture increase when incubated at 5 °C, while it increased with moisture increase when incubated at 15 and 30 °C. For subsurface soils, the relative abundance and diversity of methanotrophs in all samples decreased with moisture increase. However, there was no significant difference in the diversity of methanogens between the two soil depths, while the relative abundance of methanogens in both depths soils increased with temperature increase when incubated at 150% water-filled pore space (WFPS). Microbial community composition exhibited large variations in post incubation samples except for one treatment based on the surface soils incubated at 15 °C, which showed a decrease in the total and unique species number of methanotrophs with moisture increase. In contrast, the unique species number of methanogens in surface soils increased with moisture increase. The analysis of distance-based redundancy analysis (db-RDA) showed that soil pH, dissolved organic carbon (DOC), dissolved organic nitrogen (DON), microbial biomass carbon (MBC), NO3−-N, and NH4+-N mainly performed a significant effect on methanotrophs community composition when incubated at 60% WFPS, while they performed a significant effect on methanogens community composition when incubated at 150% WFPS. Overall, our findings emphasized the vital function of soil hydrology in triggering CH4 efflux from subtropical plantation forest soils under future climate change.

Warming and disturbance alter soil microbiome diversity and function in a northern forest ecotone

The response to global change by soil microbes is set to affect important ecosystem processes. These impacts could be most immediate in transitional zones, such as the temperate-boreal forest ecotone, yet previous work in these forests has primarily focused on specific subsets of microbial taxa. Here, we examined how bacterial and fungal communities respond to simulated above- and below-ground warming under realistic field conditions in closed and open canopy treatments in Minnesota, USA. Our results show that warming and canopy disturbance shifted bacterial and fungal community structure as dominant bacterial and fungal groups differed in the direction and intensity of their responses. Ectomycorrhizal and saprotrophic fungal communities with greater connectivity (higher prevalence of strongly interconnected taxa based on pairwise co-occurrence relationships) were more resistant to compositional change. Warming effects on soil enzymes involved in the hydrolytic and oxidative liberation of carbon from plant cell walls and nutrients from organic matter were most strongly linked to fungal community responses, although community structure-function relationships differed between fungal guilds. Collectively, these findings indicate that warming and disturbance will influence the composition and function of microbial communities in the temperate-boreal ecotone, and fungal responses are particularly important to understand for predicting future ecosystem functioning.

Simulated warming enhances the responses of microbial N transformations to reactive N input in a Tibetan alpine meadow

Alpine ecosystems worldwide are characterized with high soil organic carbon (C) and low mineral nitrogen (N). Climate warming has been predicted to stimulate microbial decomposition and N mineralization in these systems. However, experimental results are highly variable, and the underlying mechanisms remain unclear. We examined the effects of warming, N input, and their combination on soil N pools and N-cycling microbes in a field manipulation experiment. Special attention was directed to the ammonia-oxidizing bacteria and archaea, and their mediated N-cycling processes (transformation rates and N₂O emissions) in the third plant growing season after the treatments were initiated. Nitrogen input (12 g m^-2 y^-1) alone significantly increased soil mineral N pools and plant N uptake, and stimulated the growth of AOB and N₂O emissions in the late growing season. While warming (by 1.4 °C air temperature) alone did not have significant effects on most parameters, it amplified the effects of N input on soil N concentrations and AOB abundance, eliciting a chain reaction that increased nitrification potential (+83%), soil NO₃^--N (+200%), and N₂O emissions (+412%) across the whole season. Also, N input reduced AOB diversity but increased the dominance of genus Nitrosospira within the AOB community, corresponding to the increased N₂O emissions. These results showed that a small temperature increase in soil may significantly enhance N losses through NO₃^- leaching and N₂O emissions when mineral N becomes available. These findings suggest that interactions among global change factors may predominantly affect ammonia-oxidizing microbes and their mediated N-cycling processes in alpine ecosystems under future climate change scenarios.

Terrestrial N2 O emissions and related functional genes under climate change: A global meta-analysis

Nitrous oxide (N₂ O) emissions from soil contribute to global warming and are in turn substantially affected by climate change. However, climate change impacts on N₂ O production across terrestrial ecosystems remain poorly understood. Here, we synthesized 46 published studies of N₂ O fluxes and relevant soil functional genes (SFGs, that is, archaeal amoA, bacterial amoA, nosZ, narG, nirK and nirS) to assess their responses to increased temperature, increased or decreased precipitation amounts, and prolonged drought (no change in total precipitation but increase in precipitation intervals) in terrestrial ecosystem (i.e. grasslands, forests, shrublands, tundra and croplands). Across the data set, temperature increased N₂ O emissions by 33%. However, the effects were highly variable across biomes, with strongest temperature responses in shrublands, variable responses in forests and negative responses in tundra. The warming methods employed also influenced the effects of temperature on N₂ O emissions (most effectively induced by open-top chambers). Whole-day or whole-year warming treatment significantly enhanced N₂ O emissions, but daytime, nighttime or short-season warming did not have significant effects. Regardless of biome, treatment method and season, increased precipitation promoted N₂ O emission by an average of 55%, while decreased precipitation suppressed N₂ O emission by 31%, predominantly driven by changes in soil moisture. The effect size of precipitation changes on nirS and nosZ showed a U-shape relationship with soil moisture; further insight into biotic mechanisms underlying N₂ O emission response to climate change remain limited by data availability, underlying a need for studies that report SFG. Our findings indicate that climate change substantially affects N₂ O emission and highlights the urgent need to incorporate this strong feedback into most climate models for convincing projection of future climate change.

Nitrous oxide production by ammonia oxidizers: Physiological diversity, niche differentiation and potential mitigation strategies

Oxidation of ammonia to nitrite by bacteria and archaea is responsible for global emissions of nitrous oxide directly and indirectly through provision of nitrite and, after further oxidation, nitrate to denitrifiers. Their contributions to increasing N₂ O emissions are greatest in terrestrial environments, due to the dramatic and continuing increases in use of ammonia-based fertilizers, which have been driven by requirement for increased food production, but which also provide a source of energy for ammonia oxidizers (AO), leading to an imbalance in the terrestrial nitrogen cycle. Direct N₂ O production by AO results from several metabolic processes, sometimes combined with abiotic reactions. Physiological characteristics, including mechanisms for N₂ O production, vary within and between ammonia-oxidizing archaea (AOA) and bacteria (AOB) and comammox bacteria and N₂ O yield of AOB is higher than in the other two groups. There is also strong evidence for niche differentiation between AOA and AOB with respect to environmental conditions in natural and engineered environments. In particular, AOA are favored by low soil pH and AOA and AOB are, respectively, favored by low rates of ammonium supply, equivalent to application of slow-release fertilizer, or high rates of supply, equivalent to addition of high concentrations of inorganic ammonium or urea. These differences between AOA and AOB provide the potential for better fertilization strategies that could both increase fertilizer use efficiency and reduce N₂ O emissions from agricultural soils. This article reviews research on the biochemistry, physiology and ecology of AO and discusses the consequences for AO communities subjected to different agricultural practices and the ways in which this knowledge, coupled with improved methods for characterizing communities, might lead to improved fertilizer use efficiency and mitigation of N₂ O emissions.

Short-Term Response of the Soil Microbial Abundances and Enzyme Activities to Experimental Warming in a Boreal Peatland in Northeast China

Global warming is likely to influence the soil microorganisms and enzyme activity and alter the carbon and nitrogen balance of peatland ecosystems. To investigate the difference in sensitivities of carbon and nitrogen cycling microorganisms and enzyme activity to warming, we conducted three-year warming experiments in a boreal peatland. Our findings demonstrated that both mcrA and nirS gene abundance in shallow soil and deep soil exhibited insensitivity to warming, while shallow soil archaea 16S rRNA gene and amoA gene abundance in both shallow soil and deep soil increased under warming. Soil pmoA gene abundance of both layers, bacterial 16S rRNA gene abundance in shallow soil, and nirK gene abundance in deep soil decreased due to warming. The decreases of these gene abundances would be a result of losing labile substrates because of the competitive interactions between aboveground plants and underground soil microorganisms. Experimental warming inhibited β-glucosidase activity in two soil layers and invertase activity in deep soil, while it stimulated acid phosphatase activity in shallow soil. Both temperature and labile substrates regulate the responses of soil microbial abundances and enzyme activities to warming and affect the coupling relationships of carbon and nitrogen. This study provides a potential microbial mechanism controlling carbon and nitrogen cycling in peatland under climate warming.