Structural and functional responses of invertebrate communities to climate change and flow regulation in alpine catchments

Temporal niche dynamics of spreading native invertebrates underlie doubling of richness in pristine temperate streams

While biodiversity loss is undeniably a global phenomenon, an increase in taxonomic richness has recently been reported from some ecosystems and spatial scales. A striking increase in abundance and/or species richness has been documented from temperate rivers over the last 25 years, with many of the expanding species (i.e. winners) being native species. However, the lack of repeatedly collected local environmental data prevents the exploration of their niche dynamics and also makes it difficult to distinguish between possible causes. We fill this gap by using species occurrence data from 65 pristine Czech rivers sampled in 1997-2000 and 2015. The same methods were used for sampling macroinvertebrates and measuring environmental parameters in both periods. We selected 43 winners, defined as taxonomically validated and originally non-rare native macroinvertebrate species whose occupancy increased by at least six sites between the time periods. We searched for consistent patterns of niche dynamics (i.e. stability, expansion and restriction) among species that might contribute most to the overall increase in species richness. Using several biological traits, we also compared the winners with the other 253 taxa collected to look for differences. Analysis of the occurrence data showed that niche stability was by far the predominant pattern of the niche dynamics. This clearly indicates that the winners fill their original niches, with a limited contribution of niche shift or expansion, depending on the species. As no significant differences in either temperature preferences or the other biological traits were found between the winners and the other taxa, there is no unique set of functional traits that explain the success of the winners. The observed mechanism of filling the original niche space by the spreading native species not only explains the increase in local species richness, but also contributes to support the hypothesis of a climate-driven increase in ecosystem energy flow from a new perspective. The increased metabolism of the system may relax interspecific competition allowing it to carry more individuals and species, even without the need for an increase in nutrients and ecosystem recovery.

Loss of meltwater from glaciers and snowpack may increase synchrony of river habitats and resources in mountain watersheds

Stream biogeochemical regimes can vary over short distances in heterogenous landscapes. In many mountainous and high-latitude watersheds, streams fed by rain and groundwater sources coexist with streams dominated by meltwater from melting glaciers, permafrost, and seasonal snowpack. The distinct physicochemical regimes of meltwater and non-meltwater fed streams can promote spatial and temporal asynchronies in biotic and abiotic environmental conditions within watersheds that promote ecological heterogeneity and stability. However, fading cryospheric inputs to watersheds threaten to homogenize and synchronize stream habitats and resources. Here, we compared the physicochemical conditions and biomass dynamics of stream food webs (course particulate detritus, periphyton, aquatic invertebrates, and fish) over a meltwater season from April to November in four streams with different predominant sources of runoff, one glacier-fed, one snow-fed, one rain-fed, and one stream transitioning from glacier- and snow-fed to a rain-fed. We then analyzed the temporal correlation ("synchrony") of the abiotic and biotic conditions in these streams and evaluated how synchrony might change if certain stream types were lost. We found that glacier-, snow-, and rain-fed streams had distinct temperature, flow, and water chemistry regimes and asynchronous seasonal patterns of detritus, biofilm, aquatic invertebrate, and fish biomass. The strongest differences were associated with the divergence of abiotic and biotic conditions in the glacier-fed stream relative to the other stream types. Synchrony analysis suggests that the climate-driven loss of meltwater contributions from the cryosphere may synchronize the seasonal resource dynamics of meltwater and non-meltwater streams during the primary growing season within and across watersheds. Increasing synchrony of abiotic processes that drive instream production could reduce ecological stability within watersheds as seasonal conditions converge, especially for mobile consumers that will lose the opportunity to integrate resource waves across complex landscapes.

Bending the curve of global freshwater biodiversity loss: what are the prospects?

Freshwater biodiversity conservation has received substantial attention in the scientific literature and is finally being recognized in policy frameworks such as the Global Biodiversity Framework and its associated targets for 2030. This is important progress. Nonetheless, freshwater species continue to be confronted with high levels of imperilment and widespread ecosystem degradation. An Emergency Recovery Plan (ERP) proposed in 2020 comprises six measures intended to "bend the curve" of freshwater biodiversity loss, if they are widely adopted and adequately supported. We review evidence suggesting that the combined intensity of persistent and emerging threats to freshwater biodiversity has become so serious that current and projected efforts to preserve, protect and restore inland-water ecosystems may be insufficient to avert substantial biodiversity losses in the coming decades. In particular, climate change, with its complex and harmful impacts, will frustrate attempts to prevent biodiversity losses from freshwater ecosystems already affected by multiple threats. Interactions among these threats will limit recovery of populations and exacerbate declines resulting in local or even global extinctions, especially among low-viability populations in degraded or fragmented ecosystems. In addition to impediments represented by climate change, we identify several other areas where the absolute scarcity of fresh water, inadequate scientific information or predictive capacity, and a widespread failure to mitigate anthropogenic stressors, are liable to set limits on the recovery of freshwater biodiversity. Implementation of the ERP rapidly and at scale through many widely dispersed local actions focused on regions of high freshwater biodiversity and intense threat, together with an intensification of ex-situ conservation efforts, will be necessary to preserve native freshwater biodiversity during an increasingly uncertain climatic future in which poorly understood, emergent and interacting threats have become more influential. But implementation of the ERP must be accompanied by measures that will improve water, energy and food security for humans - without further compromising the condition of freshwater ecosystems. Unfortunately, the inadequate political implementation of policies to arrest widely recognized environmental challenges such as climate change do not inspire confidence about the possible success of the ERP. In many parts of the world, the Anthropocene future seems certain to include extended periods with an absolute scarcity of uncontaminated surface runoff that will inevitably be appropriated by humans. Unless there is a step-change in societal awareness of - and commitment to - the conservation of freshwater biodiversity, together with necessary actions to arrest climate change, implementation of established methods for protecting freshwater biodiversity may not bend the curve enough to prevent continued ecosystem degradation and species loss.

Bioindicator aquatic insects at risk from climate change in a biodiversity hotspot

Climate change can affect biological assemblages by shifting their species' geographic range and changing species richness. Aquatic insects represent more than half of the freshwater animal species but have been neglected mainly in climate change assessments, particularly in tropical ecosystems. Among the aquatic insect taxa, Ephemeroptera, Plecoptera, and Trichoptera (EPT) are well-known bioindicators of environmental changes and encompass an essential metric for rivers and streams' biomonitoring. Here, we use ecological niche models to project the impact of climate change on the distribution range and richness of EPT in the Atlantic Forest biodiversity hotspot. We found EPT to be at high risk from future climate change, with Plecoptera as the order of greatest concern. We projected range contraction of ca. 90 % of the analyzed EPT genera, resulting in a reduction in the richness of EPT genera under future climatic conditions. We projected >50 % contraction in the distribution of 50 % of Plecoptera, ≈14 % of Trichoptera, and ≈7 % of Ephemeroptera genera. The remaining climatically suitable regions in the Atlantic Forest are concentrated in the high-altitude areas, which may act as climate refuges for EPT biodiversity in the future. The projected changes in EPT's distribution range and richness may impact biomonitoring programs conducted in tropical ecosystems. Restricting EPT's geographic distribution may undermine its potential as a bioindicator and influence the composition of EPT assemblages at reference sites, which may lead to shifting baseline conditions. We reinforce the importance of considering future climatic conditions when planning long-term biomonitoring and priority areas for conservation.

Determining critical periods for thermal acclimatisation using a distributed lag non-linear modelling approach

Rapid changes in thermal environments are threatening many species worldwide. Thermal acclimatisation may partially buffer species from the impacts of these changes, but currently, the knowledge about the temporal dynamics of acclimatisation remains limited. Moreover, acclimatisation phenotypes are typically determined in laboratory conditions that lack the variability and stochasticity that characterise the natural environment. Through a distributed lag non-linear model (DLNM), we use field data to assess how the timing and magnitude of past thermal exposures influence thermal tolerance. We apply the model to two Scottish freshwater Ephemeroptera species living in natural thermal conditions. Model results provide evidence that rapid heat hardening effects are dramatic and reflect high rates of change in temperatures experienced over recent hours to days. In contrast, temperature change magnitude impacted acclimatisation over the course of weeks but had no impact on short-term responses. Our results also indicate that individuals may de-acclimatise their heat tolerance in response to cooler environments. Based on the novel insights provided by this powerful modelling approach, we recommend its wider uptake among thermal physiologists to facilitate more nuanced insights in natural contexts, with the additional benefit of providing evidence needed to improve the design of laboratory experiments.

Nuanced impacts of the invasive aquatic plant Crassula helmsii on Northwest European freshwater macroinvertebrate assemblages

Invasive alien species are considered one of the greatest threats to global biodiversity, and are particularly problematic in aquatic systems. Given the foundational role of macrophytes in most freshwaters, alien aquatic plant invasions may drive strong bottom-up impacts on recipient biota. Crassula helmsii (New Zealand pygmyweed) is an Australasian macrophyte, now widespread in northwest Europe. Crassula helmsii rapidly invades small lentic waterbodies, where it is generally considered a serious threat to native biodiversity. The precise ecological impacts of this invasion remain poorly understood, however, particularly with respect to macroinvertebrates, which comprise the bulk of freshwater faunal biodiversity. We conducted a field study of ponds, ditches and small lakes across the core of C. helmsii's invasive range (United Kingdom, Belgium and the Netherlands), finding that invaded sites had higher macroinvertebrate taxon richness than uninvaded sites, and that many infrequent and rare macroinvertebrates co-occurred with C. helmsii. Alien macroinvertebrates were more abundant in C. helmsii sites, however, particularly the North American amphipod Crangonyx pseudogracilis. At the order level, water beetle (Coleoptera) richness and abundance were higher in C. helmsii sites, whereas true fly (Diptera) abundance was higher in uninvaded sites. Taxonomic and functional assemblage composition were both impacted by invasion, largely in relation to taxa and traits associated with detritivory, suggesting that the impacts of C. helmsii on macroinvertebrates are partly mediated by the availability and palatability of its detritus. The nuanced effects of C. helmsii on macroinvertebrates found here should encourage further quantitative research on the impacts of this invasive plant, and perhaps prompt a more balanced re-evaluation of its effects on native aquatic macrofauna.

Climate change and the biodiversity of alpine ponds: Challenges and perspectives

Inland waters are among the most threatened biodiversity hotspots. Ponds located in alpine areas are experiencing more rapid and dramatic water temperature increases than any other biome. Despite their prevalence, alpine ponds and their biodiversity responses to climate change have been poorly explored, reflecting their small size and difficult access. To understand the effects of climate change on alpine pond biodiversity, we performed a comprehensive literature review for papers published since 1955. Through analysis of their geographic distribution, environmental features, and biodiversity values, we identified which environmental factors related to climate change would have direct or indirect effects on alpine pond biodiversity. We then synthesized this information to produce a conceptual model of the effects of climate change on alpine pond biodiversity. Increased water temperature, reduced hydroperiod, and loss of connectivity between alpine ponds were the main drivers of biodiversity geographic distribution, leading to predictable changes in spatial patterns of biodiversity. We identified three major research gaps that, if addressed, can guide conservation and restoration strategies for alpine ponds biodiversity in an uncertain future.

Biotic homogenisation and differentiation as directional change in beta diversity: synthesising driver-response relationships to develop conceptual models across ecosystems

Biotic homogenisation is defined as decreasing dissimilarity among ecological assemblages sampled within a given spatial area over time. Biotic differentiation, in turn, is defined as increasing dissimilarity over time. Overall, changes in the spatial dissimilarities among assemblages (termed 'beta diversity') is an increasingly recognised feature of broader biodiversity change in the Anthropocene. Empirical evidence of biotic homogenisation and biotic differentiation remains scattered across different ecosystems. Most meta-analyses quantify the prevalence and direction of change in beta diversity, rather than attempting to identify underlying ecological drivers of such changes. By conceptualising the mechanisms that contribute to decreasing or increasing dissimilarity in the composition of ecological assemblages across space, environmental managers and conservation practitioners can make informed decisions about what interventions may be required to sustain biodiversity and can predict potential biodiversity outcomes of future disturbances. We systematically reviewed and synthesised published empirical evidence for ecological drivers of biotic homogenisation and differentiation across terrestrial, marine, and freshwater realms to derive conceptual models that explain changes in spatial beta diversity. We pursued five key themes in our review: (i) temporal environmental change; (ii) disturbance regime; (iii) connectivity alteration and species redistribution; (iv) habitat change; and (v) biotic and trophic interactions. Our first conceptual model highlights how biotic homogenisation and differentiation can occur as a function of changes in local (alpha) diversity or regional (gamma) diversity, independently of species invasions and losses due to changes in species occurrence among assemblages. Second, the direction and magnitude of change in beta diversity depends on the interaction between spatial variation (patchiness) and temporal variation (synchronicity) of disturbance events. Third, in the context of connectivity and species redistribution, divergent beta diversity outcomes occur as different species have different dispersal characteristics, and the magnitude of beta diversity change associated with species invasions also depends strongly on alpha and gamma diversity prior to species invasion. Fourth, beta diversity is positively linked with spatial environmental variability, such that biotic homogenisation and differentiation occur when environmental heterogeneity decreases or increases, respectively. Fifth, species interactions can influence beta diversity via habitat modification, disease, consumption (trophic dynamics), competition, and by altering ecosystem productivity. Our synthesis highlights the multitude of mechanisms that cause assemblages to be more or less spatially similar in composition (taxonomically, functionally, phylogenetically) through time. We consider that future studies should aim to enhance our collective understanding of ecological systems by clarifying the underlying mechanisms driving homogenisation or differentiation, rather than focusing only on reporting the prevalence and direction of change in beta diversity, per se.

The recovery of European freshwater biodiversity has come to a halt

Owing to a long history of anthropogenic pressures, freshwater ecosystems are among the most vulnerable to biodiversity loss1. Mitigation measures, including wastewater treatment and hydromorphological restoration, have aimed to improve environmental quality and foster the recovery of freshwater biodiversity2. Here, using 1,816 time series of freshwater invertebrate communities collected across 22 European countries between 1968 and 2020, we quantified temporal trends in taxonomic and functional diversity and their responses to environmental pressures and gradients. We observed overall increases in taxon richness (0.73% per year), functional richness (2.4% per year) and abundance (1.17% per year). However, these increases primarily occurred before the 2010s, and have since plateaued. Freshwater communities downstream of dams, urban areas and cropland were less likely to experience recovery. Communities at sites with faster rates of warming had fewer gains in taxon richness, functional richness and abundance. Although biodiversity gains in the 1990s and 2000s probably reflect the effectiveness of water-quality improvements and restoration projects, the decelerating trajectory in the 2010s suggests that the current measures offer diminishing returns. Given new and persistent pressures on freshwater ecosystems, including emerging pollutants, climate change and the spread of invasive species, we call for additional mitigation to revive the recovery of freshwater biodiversity.

Observed and projected functional reorganization of riverine fish assemblages from global change

Climate and land-use/land-cover change ("global change") are restructuring biodiversity, globally. Broadly, environmental conditions are expected to become warmer, potentially drier (particularly in arid regions), and more anthropogenically developed in the future, with spatiotemporally complex effects on ecological communities. We used functional traits to inform Chesapeake Bay Watershed fish responses to future climate and land-use scenarios (2030, 2060, and 2090). We modeled the future habitat suitability of focal species representative of key trait axes (substrate, flow, temperature, reproduction, and trophic) and used functional and phylogenetic metrics to assess variable assemblage responses across physiographic regions and habitat sizes (headwaters through large rivers). Our focal species analysis projected future habitat suitability gains for carnivorous species with preferences for warm water, pool habitats, and fine or vegetated substrates. At the assemblage level, models projected decreasing habitat suitability for cold-water, rheophilic, and lithophilic individuals but increasing suitability for carnivores in the future across all regions. Projected responses of functional and phylogenetic diversity and redundancy differed among regions. Lowland regions were projected to become less functionally and phylogenetically diverse and more redundant while upland regions (and smaller habitat sizes) were projected to become more diverse and less redundant. Next, we assessed how these model-projected assemblage changes 2005-2030 related to observed time-series trends (1999-2016). Halfway through the initial projecting period (2005-2030), we found observed trends broadly followed modeled patterns of increasing proportions of carnivorous and lithophilic individuals in lowland regions but showed opposing patterns for functional and phylogenetic metrics. Leveraging observed and predicted analyses simultaneously helps elucidate the instances and causes of discrepancies between model predictions and ongoing observed changes. Collectively, results highlight the complexity of global change impacts across broad landscapes that likely relate to differences in assemblages' intrinsic sensitivities and external exposure to stressors.

Extreme freshwater discharge events exacerbated by climate change influence the structure and functional response of the chironomid community in a biodiversity hotspot

Global climate change is expected to exacerbate extreme discharge events in freshwater ecosystems as a consequence of changes in precipitation volume and snow cover duration. Chironomid midges were used as a model organism in this study because of their small size and short life cycles, which enable fast colonization of new habitats and great resilience. This resilience is often expressed in easy recolonization after an extreme event. Chironomid samples together with physico-chemical water measurements were collected for 14 years, between 2007 and 2020, in a karst tufa barrier that is part of the Plitvice Lakes National Park in Croatia. More than 13,000 individuals belonging to >90 taxa were collected. Mean annual water temperature increased by 0.1 °C during this period. Multiple change-point analysis revealed three main periods by discharge patterns: the first one from January 2007 to June 2010, the second from July 2010 to March 2013, characterised by extreme low discharge, and the third from April 2013 to December 2020, characterised by an increase in extreme peak discharge values. Based on multilevel pattern analysis, indicator species of the first and the third discharge period were detected. The ecological preferences of these species indicate an environmental change related to the changes in discharge. Along with species composition, functional composition has changed with the abundance of passive filtrators, shredders and predators increasing over time. Species richness and abundance did not change over the period of observation, thus emphasizing the importance of species-level identification in detecting the earliest community response to change that would otherwise be overlooked.

Loss of functionally important and regionally endemic species from streams forced into intermittency by global warming

Climate change is altering hydrological cycles globally, and in Mediterranean (med-) climate regions it is causing the drying of river flow regimes, including the loss of perennial flows. Water regime exerts a strong influence over stream assemblages, which have developed over geological timeframes with the extant flow regime. Consequently, sudden drying in formerly perennial streams is expected to have large, negative impacts on stream fauna. We compared contemporary (2016/17) macroinvertebrate assemblages of formerly perennial streams that became intermittently flowing (since the early 2000s) to assemblages recorded in the same streams by a study conducted pre-drying (1981/82) in the med-climate region of southwestern Australia (the Wungong Brook catchment, SWA), using a multiple before-after, control-impact design. Assemblage composition in the stream reaches that remained perennial changed very little between the studies. In contrast, recent intermittency had a profound effect on species composition in streams impacted by drying, including the extirpation of nearly all Gondwanan relictual insect species. New species arriving at intermittent streams tended to be widespread, resilient species including desert-adapted taxa. Intermittent streams also had distinct species assemblages, due in part to differences in their hydroperiods, allowing the establishment of distinct winter and summer assemblages in streams with longer-lived pools. The remaining perennial stream is the only refuge for ancient Gondwanan relict species and the only place in the Wungong Brook catchment where many of these species still persist. The fauna of SWA upland streams is becoming homogenised with that of the wider Western Australian landscape, as drought-tolerant, widespread species replace local endemics. Flow regime drying caused large, in situ alterations to stream assemblage composition and demonstrates the threat posed to relictual stream faunas in regions where climates are drying.

Climatically promoted taxonomic homogenization of macroinvertebrates in unaffected streams varies along the river continuum

Biotic homogenization appears to be a global consequence of anthropogenic change. However, the underlying environmental factors contributing to homogenization are difficult to identify because their effects usually interact and confound each other. This can be the reason why there is very little evidence on the role of climate warming in homogenization. By analysing macroinvertebrate assemblages in 65 streams that were as close to natural conditions as possible, we avoided the confounding effects of common anthropogenic stressors. This approach resulted in revealing a significant effect of increased temperature (both summer and winter) on changes in macroinvertebrate compositional over the past two decades. However, homogenization was significant only at opposite ends of the river continuum (submontane brooks, low-altitude rivers). Surprisingly, species of native origin predominated overall, increasing in frequency and abundance ("winners"), while only a minority of species declined or disappeared ("losers"). We hypothesise that undisturbed conditions mitigate species declines and thus homogenization, and that the temperature increase has so far been beneficial to most native species. Although we may have only captured a transitional state due to extinction debt, this underscores the importance of maintaining ecological conditions in stream to prevent species loss due to climate change.

Responses of macroinvertebrate functional trait structure to river damming: From within-river to basin-scale patterns

Revealing how aquatic organisms respond to dam impacts is essential for river biomonitoring and management. Traditional examinations of dam impacts on macroinvertebrate assemblages were frequently conducted within single rivers (i.e., between upstream vs. downstream locations) and based on taxonomic identities but have rarely been expanded to level of entire basins (i.e., between dammed vs. undammed rivers) and from a functional trait perspective. Here, we evaluated the effects of dams on macroinvertebrate assemblages at both the within-river and basin scales using functional traits in two comparable tropical tributaries of the Lancang-Mekong River. At different scales, maximum body size, functional feeding groups (FFG), voltinism and occurrence in drift respond significantly to dam impact. Armoring categories varied significantly between downstream sites and upstream sites, and oviposition behavior, habits and adult life span significantly differed between rivers. The key traits at the within-river scale resembled to those at the between-river scale, suggesting that within-river trait variation could further shape functional trait structure at the basin scale in dammed rivers. Furthermore, water nutrients and habitat quality induced by dams showed the most important role in shaping trait structure, although trait-environment relationships varied between the two different scales. In addition, the trait-environment relationships were stronger in the dry season than in the wet season, suggesting a more important role of environmental filtering processes in the dry season compared with the wet season. This study highlights the utility of the trait-based approach to diagnose the effects of damming and emphasizes the importance of spatial scale to examine dam impacts in riverine systems.

Environmental DNA metabarcoding reveals the impact of different land use on multitrophic biodiversity in riverine systems

Human-induced changes in land use drive an alarming decline in river biodiversity and related ecosystem services worldwide. However, how different land use shapes aquatic multitrophic communities is still not well understood. Here, we used the biodiversity dataset from bacteria to fish captured by the environmental DNA (eDNA) approach in the four riverine systems with spatially different land use (i.e., Slightly disturbed group, Upstream disturbed group, Downstream disturbed group, and Strongly disturbed group) to reveal the changes in multitrophic biodiversity in relation to human land use. Firstly, our data showed that spatially different land use determined the pollutant loads of the riverine systems, most pollutants (e.g., TN and NH₃-N) had significant differences among the four riverine systems. Secondly, taxonomic α diversity across multitrophic levels did not necessarily change significantly, yet the change in community structure can be considered as a more sensitive indicator to reflect different land use, because different land use shaped the unique structure of multitrophic communities, and the dissimilarity of community structure was closely associated with land use gradient (e.g., positive relationships in the Slightly disturbed group, negative relationships in the Strongly disturbed group). Thirdly, different land use induced the shifts of key taxa, resulting in the variation of community structure and the change of co-occurrence network. Overall, these findings suggest that spatially different land use plays a critical role in shaping aquatic multitrophic communities, and an in-depth understanding of the interdependences between biodiversity and land use is a critical prerequisite for formulating river management strategies.

Environmental DNA Biomonitoring Reveals the Interactive Effects of Dams and Nutrient Enrichment on Aquatic Multitrophic Communities

Dam construction and nutrient enrichment are two pervasive stressors in rivers worldwide, which trigger a sharp decline in biodiversity and ecosystem services. However, the interactive effects of both stressors on multitrophic taxonomic groups remain largely unclear. Here, we used the multitrophic datasets captured by the environmental DNA (eDNA) approach to reveal the interactions between dams and nutrient enrichment on aquatic communities from the aspects of taxonomic α diversity, β diversity, and food webs. First, our data showed that dams and nutrient enrichment jointly shaped a unique spatial pattern of aquatic communities across the four river systems, and the dissimilarity of community structure significantly declined (i.e., structural homogenization) under both stressors. Second, dams and nutrients together explained 40-50% of the variations in aquatic communities, and dams had a stronger impact on fish, aquatic insects, and bacteria, yet nutrients had a stronger power to drive protozoa, fungi, and eukaryotic algae. Finally, we found that additive, synergistic, and antagonistic interactions of dams and nutrient enrichment were common and coexisted in river systems and led to significantly simplified aquatic food webs, with decreases in modularity (synergistic) and robustness (additive) and an increase in coherence (synergistic). Overall, our study highlights that eDNA-based datasets can provide multitrophic perspectives for fostering the understanding of the interactive effects of multiple stressors on rivers.

On the delay between water temperature and invertebrate community response to warming climate

We evaluated the effect of global warming on invertebrate communities at high altitudes using data from the Careser system. We procured data on air temperature, which was obtained over 50 years at altitudes above 2600 m a.s.l., and data on water temperature, which was available for approximately 30 years. We sampled thrice in the past 20 years (2001, 2014, 2018) at three sampling sites (CR0-metakryal, CR1-hypokryal, CR2-glacio-rhithral) of the Careser glacier-fed stream and its main non-glacial tributary (CR1bis-krenal). Warmer climates were observed in the last decade compared to the 1980s, with a mean maximum summer air temperature (mTmax) increase of 1.7 °C at 2642 m a.s.l. and 1.8 °C at 2858 m a.s.l. Compared to air temperatures, the rise in water temperature was delayed by approximately 20 years; water mTmax started to increase in 2003, reaching 8.1 °C at 2642 m a.s.l. and 2.4 °C at 2858 m a.s.l in the year 2020. The invertebrate community exhibited a delayed response approximately 13 years from the water warming; there was a sequential increase in the number of taxa, Shannon diversity, and after 17 years, functional diversity. In the kryal sites, taxonomical and functional diversity changed more consistently than in the glacio-rhithral site in the same period, due to the arrival of taxa that were previously absent upstream and bearers of entirely new traits. Progressive taxonomical homogenisation was evident with decreasing glacial influence, mainly between glacio-rhithral and krenal sites. The numbers of Diamesa steinboecki, an insect that was adapted to the cold, declined in summer (water mTmax >6 °C and air mTmax >12 °C). This study highlights the mode and time of response of stream invertebrate communities to global warming in alpine streams and provides guidelines for analysing changes in the stream invertebrate communities of other glacial systems in alpine regions.

The impacts of hydropower on freshwater macroinvertebrate richness: A global meta-analysis

Hydroelectric dams and their reservoirs have been suggested to affect freshwater biodiversity. Nevertheless, studies investigating the consequences of hydroelectric dams and reservoirs on macroinvertebrate richness have reached opposite conclusions. We performed a meta-analysis devised to elucidate the effects of hydropower, dams and reservoirs on macroinvertebrate richness while accounting for the potential role played by moderators such as biomes, impact types, study designs, sampling seasons and gears. We used a random/mixed-effects model, combined with robust variance estimation, to conduct the meta-analysis on 107 pairs of observations (i.e., impacted versus reference) extracted from 24 studies (more than one observation per study). Hydropower, dams and reservoirs did significantly impact (P = 0.04) macroinvertebrate richness in a clear, directional and statistically significant way, where macroinvertebrate richness in hydropower, dams and reservoirs impacted environments were significantly lower than in unimpacted environments. We also observed a large range of effect sizes, from very negative to very positive impacts of hydropower. We tried to account for the large variability in effect sizes using moderators, but none of the moderators included in the meta-analysis had statistically significant effects. This suggests that some other moderators (unavailable for the 24 studies) might be important (e.g., temperature, granulometry, wave disturbance and macrophytes) and that macroinvertebrate richness may be driven by local, smaller scale processes. As new studies become available, it would be interesting to keep enriching this meta-analysis, as well as collecting local habitat variables, to see if we could statistically strengthen and deepen the conclusions of this meta-analysis.

Temporal Changes of Fish Diversity and Driver Factors in a National Nature Reserve, China

Simple Summary

Freshwater-fish diversity declined rapidly due to multiple anthropogenic disturbances. The loss of fish diversity often manifested itself in taxonomic homogenization over time. Knowledge of multi-faceted diversity (i.e., species, functional, and phylogenetic diversity) perspectives is important for biodiversity assessment and conservation planning. The results showed that the diversity of fish has declined from 2008 to 2021, with five species lost over time. We found an overall homogenization trend in the fish fauna of the study area, with a 4% increase in the taxonomic similarity among the rivers. Additionally, we found that the community structure of fish was significantly different among the rivers, and environmental filtering was the main contributor to the phylogenetic diversity of fish in 2008 and 2021. This study provides new insight into the patterns and drivers of fish-biodiversity change in the broader Yangtze River basin and informs management efforts.

Abstract

Freshwater-fish diversity declined rapidly due to multiple anthropogenic disturbances. The loss of fish diversity often manifested itself in taxonomic homogenization over time. Knowledge of multi-faceted diversity (i.e., species, functional, and phylogenetic diversity) perspectives is important for biodiversity assessment and conservation planning. Here, we analyzed the change of the species diversity and phylogenetic diversity of fish in 2008 and 2021 as well as explored the driver factors of the biodiversity patterns in the Lushan National Nature Reserve. The results showed that the species diversity and phylogenetic diversity of fish have declined from 2008 to 2021, with five species lost over time. We found an overall homogenization trend in the fish fauna of the study area, with a 4% increase in taxonomic similarity among the rivers. Additionally, we found that community structure of fish was significantly different among the rivers, and environmental filtering was the main contributor to the phylogenetic diversity of fish in 2008 and 2021. This study provides new insight into the patterns and drivers of fish-biodiversity change in the broader Yangtze River basin and informs management efforts.

DNA metabarcoding reveals human impacts on macroinvertebrate communities in polluted headwater streams: Evidence from the Liao River in northeast China

Headwater streams are a hotspot of freshwater biodiversity, carrying indispensable resource pools of aquatic species. However, up to now, there remain many challenges to accurately and efficiently characterize the responses of this vulnerable ecosystem to human-induced changes. Here, we collected macroinvertebrate data from 12 different headwater streams in the Liao River of northeast China by DNA metabarcoding approach, to reveal biodiversity changes and ecological thresholds affected by human beings. Our data showed that the community composition and structure of headwater streams had unique and significant differences under human impacts, and 5-day biological oxygen demand (BOD₅) and ammonia nitrogen (NH₃-N) were the key variables explaining the variation in community structure. Although α diversity had a unimodal relationship with nutrients and organic loads, β diversity and its turnover component (species replacement) increased significantly. In addition, 22 and 33 indicative taxa were identified to have significant negative responses to BOD₅ and NH₃-N, respectively, and the change points derived from Threshold Indicator Taxa Analysis (TITAN) for the negative response of their frequency and abundance were BOD₅ >3.42 mg/L and NH₃-N >0.14 mg/L. Overall, this study reveals the biodiversity changes in headwater streams from the aspects of α and β diversity, and also determines the thresholds of BOD₅ and NH₃-N pollutants for one reach at one date from 12 headwater streams, suggesting the potential of DNA metabarcoding approach for threshold analyses in headwater streams.

Consideration of Multitrophic Biodiversity and Ecosystem Functions Improves Indices on River Ecological Status

Biological quality elements have been developed worldwide to assess whether a water body is in a good status or not. However, current studies mainly focus on a single taxonomic group or a small set of species, often limited by methods of morphological identification, and lack further aspects of biodiversity (e.g., across taxa and multiple attributes) and ecosystem functions. Here, we advance a framework for assessing the river's ecological status based on complete biodiversity data measured by environmental DNA (eDNA) metabarcoding and measurements of ecosystem functions in addition to physicochemical elements across a large riverine system in China. We identified 40 indicators of biodiversity and ecosystem functions, covering five taxonomic groups from bacteria to invertebrates, and associated with multiple attributes of biodiversity and ecosystem functions. Our data show that human impact on ecosystems could be accurately predicted by these eDNA-based indicators and ecosystem functions, using cross-validation with a known stressor gradient. Moreover, indices based on these indicators of biodiversity and ecosystem functions not only distinguish the physicochemical characteristics of the sites but also improve the assessment accuracy of 20-30% for the river's ecological status. Overall, by incorporating eDNA-based biodiversity with physicochemical and ecosystem functional elements, the multidimensional perspectives of ecosystem states provide additional information to protect and maintain a good ecological status of rivers.

Multidecadal changes in functional diversity lag behind the recovery of taxonomic diversity

While there has been increasing interest in how taxonomic diversity is changing over time, less is known about how long-term taxonomic changes may affect ecosystem functioning and resilience. Exploring long-term patterns of functional diversity can provide key insights into the capacity of a community to carry out ecological processes and the redundancy of species' roles. We focus on a protected freshwater system located in a national park in southeast Germany. We use a high-resolution benthic macroinvertebrate dataset spanning 32 years (1983-2014) and test whether changes in functional diversity are reflected in taxonomic diversity using a multidimensional trait-based approach and regression analyses. Specifically, we asked: (i) How has functional diversity changed over time? (ii) How functionally distinct are the community's taxa? (iii) Are changes in functional diversity concurrent with taxonomic diversity? And (iv) what is the extent of community functional redundancy? Resultant from acidification mitigation, macroinvertebrate taxonomic diversity increased over the study period. Recovery of functional diversity was less pronounced, lagging behind responses of taxonomic diversity. Over multidecadal timescales, the macroinvertebrate community has become more homogenous with a high degree of functional redundancy, despite being isolated from direct anthropogenic activity. While taxonomic diversity increased over time, functional diversity has yet to catch up. These results demonstrate that anthropogenic pressures can remain a threat to biotic communities even in protected areas. The differences in taxonomic and functional recovery processes highlight the need to incorporate functional traits in assessments of biodiversity responses to global change.

Multiple co-occurrent alien invaders constrain aquatic biodiversity in rivers

A greater understanding and effective management of biological invasions is a priority for biodiversity conservation globally. Many freshwater ecosystems are experiencing the colonization and spread of multiple co-occurrent alien species. Here the implications of both the relative abundance and richness of alien invaders on aquatic macroinvertebrate taxonomic and functional richness, ecosystem quality, and functional redundancy are assessed using long-term data from rivers in England. Based on the most common aquatic invaders, results indicated that their richness, rather than abundance, was the most important factor negatively affecting aquatic macroinvertebrate biodiversity. However, the response of functional redundancy was negatively affected by invader abundance at the river basin scale. The response of communities varied as the number of invading taxa increased, with the most marked reductions following the colonization of the first few invaders. Results indicate that different facets of multiple biological invasions influence distinct aspects of aquatic biodiversity. Preventing the establishment of new invaders and limiting invader taxa richness within a community should therefore be a conservation priority. These findings will assist river scientists in understanding mechanisms driving changes in biodiversity and facilitate the testing of ecological theories while also ensuring environmental managers and regulators can prioritize conservation / management opportunities.

Predicting Macroinvertebrate Responses to Water Abstraction in Alpine Streams

Exploitation of hydropower potential in alpine areas undermines the ecological integrity of rivers. Damming and water abstraction substantially alter the physical habitat template of rivers, with strong repercussions on aquatic communities and their resources. Tools are needed to predict and manage the consequences of these alterations on the structure and functioning of macroinvertebrate communities and resource availability in alpine streams. We developed habitat preference models for taxa, functional feeding guilds, and organic resources to quantify the effects of discharge alteration on macroinvertebrate communities in two alpine streams. Our physical habitat model related an indirect measure of bottom hydraulic forces (FST hemispheres) to the distribution of macroinvertebrate taxa and their resources. We observed that flow-dependent habitat availability for macroinvertebrate communities generally decreased with increasing water abstraction. We were able to relate these changes to near-bed hydraulic conditions. Our results suggest, however, the existence of upper discharge thresholds delimiting optimal habitat conditions for taxa. In contrast, we found weak effects of near-bed hydraulic conditions on resource distribution. Overall, our findings contribute towards predicting the impacts of water abstraction on macroinvertebrate communities in small alpine streams and the benefits of baseflow restoration.

Damming affects riverine macroinvertebrate metacommunity dynamics: Insights from taxonomic and functional beta diversity

Understanding ecological processes that drive metacommunity dynamics is essential for elucidating the mechanisms of community assembly and for guiding biodiversity conservation. This is especially important in dammed rivers. Here, we examined the taxonomic and functional beta diversity of macroinvertebrates and their underlying drivers in a dammed tropical river and compared the patterns with those in an adjacent undammed river. We found that both taxonomic and functional beta diversities were higher in the dammed river than in the undammed river across wet and dry seasons. The replacement component contributed most to the overall beta diversity for both taxonomic and functional facets, and this component was higher in the dammed river than in the undammed river. In addition, the taxonomic richness difference component was significantly higher in the dammed river in the dry season, but the functional richness difference component showed no difference between the two rivers and between the two seasons. Environmental filtering was the primary driver of total beta diversity and its replacement component, whereas the richness difference component was mainly explained by spatial factors, but these drivers varied in the dammed river in different seasons. Overall, our results indicated that damming induced changes in physiochemical variables (e.g., temperature, conductivity, and nutrients), accompanied by alterations in flow regime and longitudinal connectivity, increased replacement and loss of taxa or traits. These changes have consequently led to alteration of macroinvertebrate taxonomic and functional community dissimilarity and affected the relative effects of environmental and spatial factors on beta diversity and its components. Our study helps understand the ecological processes associated with dam impacts on macroinvertebrate biodiversity and the conservation potential of undammed rivers. In addition, our results showed that taxonomic and functional beta diversities can provide complementary information about dam impacts on riverine biodiversity.

Increasing anthropogenic salinisation leads to declines in community diversity, functional diversity and trophic links in mountain streams

Anthropogenic salinisation is becoming an increasing global issue for freshwater ecosystems, leading to serious biodiversity loss and ecosystem degradation. While the effect of anthropogenic salinisation on freshwater ecosystems has been intensively studied in recent years, most studies focus on salinisation effects on the individual or single groups of organisms without considering the effect on the ecosystem levels, such as diversity and trophic links. Therefore, we conducted a long-term field survey from May 2009 to August 2016 at 405 sites in northeast China to investigate the effect of a gradient of salinisation on community diversity, functional diversity and trophic links in mountain streams. Samples of water chemistry, periphyton, macroinvertebrates and fish were collected. Our results showed that as anthropogenic salinisation increased, Ca²⁺, Mg²⁺, HCO₃^- and SO₄^2- exhibited significant increases (p < 0.05). These increased ions caused decreases in taxonomic evenness and biotic integrity, but an increase in the beta diversity for periphyton and macroinvertebrates, and a slight increase in the evenness of fish. The increased salinisation resulted in the extirpation of salt-sensitive taxa and declines in macroinvertebrate functional richness and functional redundancy, which consequently led to simplified trophic links. Our results implied that if salt-tolerant taxa in high salinisation sites were not functionally redundant with less tolerant taxa, alterations of their functional composition probably decrease the stability of ecosystem functions. Overall, our study suggests that the ongoing anthropogenic salinisation is posing serious threats to biodiversity and trophic links in river ecosystems, and should be considered in future river restoration and biodiversity conservation.

Human activities' fingerprint on multitrophic biodiversity and ecosystem functions across a major river catchment in China

Human-induced global change dramatically alters individual aspects of river biodiversity, such as taxonomic, phylogenetic or functional diversity, and is predicted to lead to losses of associated ecosystem functions. Understanding these losses and dependencies are critical to human well-being. Until now, however, most studies have only looked either at individual organismal groups or single functions, and little is known on the effect of human activities on multitrophic biodiversity and on ecosystem multifunctionality in riverine ecosystem. Here we profiled biodiversity from bacteria to invertebrates based on environmental DNA (hereafter, 'eDNA') samples across a major river catchment in China, and analysed their dependencies with multiple ecosystem functions, especially linked to C/N/P-cycling. Firstly, we found a spatial cross-taxon congruence pattern of communities' structure in the network of the Shaying river, which was related to strong environmental filtering due to human land use. Secondly, human land use explained the decline of multitrophic and multifaceted biodiversity and ecosystem functions, but increased functional redundancy in the riverine ecosystem. Thirdly, biodiversity and ecosystem function relationships at an integrative level showed a concave-up (non-saturating) shape. Finally, structural equation modeling suggested that land use affects ecosystem functions through biodiversity-mediated pathways, including biodiversity loss and altered community interdependence in multitrophic groups. Our study highlights the value of a complete and inclusive assessment of biodiversity and ecosystem functions for an integrated land-use management of riverine ecosystems.

Increasing climate-driven taxonomic homogenization but functional differentiation among river macroinvertebrate assemblages

Global change is increasing biotic homogenization globally, which modifies the functioning of ecosystems. While tendencies towards taxonomic homogenization in biological communities have been extensively studied, functional homogenization remains an understudied facet of biodiversity. Here, we tested four hypotheses related to long-term changes (1991-2016) in the taxonomic and functional arrangement of freshwater macroinvertebrate assemblages across space and possible drivers of these changes. Using data collected annually at 64 river sites in mainland New Zealand, we related temporal changes in taxonomic and functional spatial β-diversity, and the contribution of individual sites to β-diversity, to a set of global, regional, catchment and reach-scale environmental descriptors. We observed long-term, mostly climate-induced, temporal trends towards taxonomic homogenization but functional differentiation among macroinvertebrate assemblages. These changes were mainly driven by replacements of species and functional traits among assemblages, rather than nested species loss. In addition, there was no difference between the mean rate of change in the taxonomic and functional facets of β-diversity. Climatic processes governed overall population and community changes in these freshwater ecosystems, but were amplified by multiple anthropogenic, topographic and biotic drivers of environmental change, acting widely across the landscape. The functional diversification of communities could potentially provide communities with greater stability, resistance and resilience capacity to environmental change, despite ongoing taxonomic homogenization. Therefore, our study highlights a need to further understand temporal trajectories in both taxonomic and functional components of species communities, which could enable a clearer picture of how biodiversity and ecosystems will respond to future global changes.

Functional response of fish communities in a multistressed freshwater world

Freshwater fish communities are impacted by multiple pressures, determining loss of functional diversity and redundancy. Our aim was to disentangle the roles and relevancies of different pressures in shaping fish communities in small streams of the Po plain (North Italy). Long term trend (1998-2018) of functional diversity of 31 fish communities was assessed and modeled in respect to three potential pressures: temperature increase, intensity of exotic fish invasion, and habitat quality degradation. Ecological traits mostly influenced by the pressures were also identified. Reduction of functional richness mostly due to local extinction or contraction of cold adapted predators, such as salmonids, was linked to increasing temperatures. Warming probably also led to a shift of generalist and dominant species, which became more abundant in streams hosting mixed communities of salmonids and cyprinids, and determined the increase of functional dispersion and uniqueness. Reduction of functional redundancy and increasing functional dispersion were both also related to the introduction of new ecological traits brought by expanding exotic species. Low functional overlap was found among native and exotic species, indicating that the invasion process was mainly controlled by competitive interactions and/or resource opportunism. Functional response to habitat quality was not clearly evident. In conclusion, the impact of temperature increase and exotic species on fish functional diversity was effective, idiosyncratic and mediated by the scale of analysis and by the intensity of pressures.

The role of hydro-environmental factors in Mayfly (Ephemeroptera, Insecta) community structure: Identifying threshold responses

Freshwater organisms are threatened by changes in stream flow and water temperature regimes due to global climate change and anthropogenic activities. Threats include the disappearance of narrow-tolerance species and loss of favorable thermal conditions for cold-adapted organisms. Mayflies are an abundant and diverse indicator of river health that performs important functional roles. The relative importance of key hydro-environmental factors such as water temperature and flow volumes in structuring these communities has rarely been explored in the tropical regions of Africa. Here, we investigate the response of mayfly species diversity to these factors in the Luvuvhu catchment, a strategic water source area in the arid northeastern region of South Africa. Mayfly larvae were sampled monthly in stones-in-current biotopes across 23 sites over a one-year period. The relationship between these environmental drivers and mayfly diversity was modeled using linear mixed effects models (LMMs) and a model-based multivariate approach. Threshold Indicator Taxa Analysis (TITAN) was used to model the response of mayfly species to important gradients and identify thresholds of change. Site-specific characteristic were the most important predictor of mayfly diversity, and there was considerable variation over time, with mayfly diversity peaking during winter. Along this, gradient temperature was the best predictor of assemblage structure, with five out of six reliable indicator species being cold-adapted, and a community threshold response at 19°C. Results support laboratory-based thresholds of temperature for mayfly species survival and development, extending empirical evidence to include field-based observations. Increased global (climate change) and local (riparian vegetation removal, impoundments) changes are predicted to have negative impacts on mayfly diversity and ultimately on ecosystem function.

Linkages between flow regime, biota, and ecosystem processes: Implications for river restoration

River ecosystems are highly biodiverse, influence global biogeochemical cycles, and provide valued services. However, humans are increasingly degrading fluvial ecosystems by altering their streamflows. Effective river restoration requires advancing our mechanistic understanding of how flow regimes affect biota and ecosystem processes. Here, we review emerging advances in hydroecology relevant to this goal. Spatiotemporal variation in flow exerts direct and indirect control on the composition, structure, and dynamics of communities at local to regional scales. Streamflows also influence ecosystem processes, such as nutrient uptake and transformation, organic matter processing, and ecosystem metabolism. We are deepening our understanding of how biological processes, not just static patterns, affect and are affected by stream ecosystem processes. However, research on this nexus of flow-biota-ecosystem processes is at an early stage. We illustrate this frontier with evidence from highly altered regulated rivers and urban streams. We also identify research challenges that should be prioritized to advance process-based river restoration.