Methanogenic community changes, and emissions of methane and other gases, during storage of acidified and untreated pig slurry

Pig slurry organic matter transformation and methanogenesis at ambient storage temperatures

Manure management is a significant source of global methane emissions, and there is an increased interest in understanding and predicting emissions. The hydrolysis rate of manure organic matter is critical for understanding and predicting methane emissions. We estimated hydrolysis rate constants of crude protein, fibers, and lipids and used the Arrhenius equation to describe its dependency on temperature. Simultaneously, measurements of methane emission, 13/12 C isotope ratios, and methanogen community were conducted. This was achieved by incubating fresh pig manure without inoculum at 10°C, 15°C, 20°C, and 25°C for 85 days in a lab-scale setup. Hydrolysis of hemicellulose and cellulose increased more with temperature than crude protein, but still, hydrolysis rate of crude protein was highest at all temperatures. Results suggested that crude protein consisted of multiple substrate groups displaying large differences in degradability. Lipids and lignin were not hydrolyzed during incubations. Cumulative methane emissions were 7.13 ± 2.69, 24.6 ± 8.00, 66.7 ± 4.8, and 105.7 ± 7.14 gCH4 kgVS -1 at 10°C, 15°C, 20°C, and 25°C, respectively, and methanogenic community shifted from Methanosphaera toward Methanocorpusculum over time and more quickly at higher temperatures. This study provides important parameter estimates and dependencies on temperature, which is important in mechanistic methane emission models. Further work should focus on characterizing quickly degradable substrate pools in the manure organic matter as they might be the main carbon source of methane emission from manure management.

Responses of CH4, N2O, and NH3 emissions to different slurry pH values of 5.5-10.0: Characteristics and mechanisms

Animal slurry storage is a significant source of greenhouse gas (GHG) and ammonia (NH3) emissions. pH is a basic but key factor that could pose great influence on gas emissions, but the simultaneous evaluation of its influence on GHG and NH3 emissions and the understanding of its underlying mechanism are not enough. In this work, pH was adjusted between 5.5 and 10.0 by a step of 0.5 unit by adding lactic acid and sodium hydroxide (NaOH) properly and frequently to the stored slurry during a 43-day storage period. The cumulative NH3 emissions were linearly correlated with the slurry pH, with R2 being 0.982. Maintaining the slurry pH at 5.5-6.0 could reduce NH3 emissions by 69.4%-85.1% compared with the non-treated group (CK). The pH ranges for maximum methane (CH4) and nitrous oxide (N2O) emissions were 7.5-8.5 and 6.5-8.5, respectively, and the slurry under pH 7.5-8.5 showed the highest GHG emissions. Acidification to pH 5.5 helped reduce the CH4, N2O, and total GHG emissions by 98.0%, 29.3%, and 81.7%, respectively; while alkalinization to pH 10.0 helped achieve the mitigation effects of 74.1%, 24.9%, and 30.6%, respectively. The Pearson's correlation factor between CH4 and the gene copy of mcrA under different pH values was 0.744 (p < 0.05). Meanwhile, the correlation factors between N2O and the gene copies of amoA, narG, and nirS were 0.644 (p < 0.05), 0.719 (p < 0.05), and 0.576 (p = 0.081), respectively. The gene copies of mcrA, amoA, narG, and nirS were maintained at the lowest level under pH 5.5. These results recommended keeping slurry pH lower than 5.5 with lactic acid can help control GHG and NH3 emissions simultaneously and effectively.

Frequent export of pig slurry for outside storage reduced methane but not ammonia emissions in cold and warm seasons

Manure management is a significant source of methane (CH4) and ammonia (NH3), and there is an urgent need for strategies to reduce these emissions. More frequent export of manure for outside storage can lower gaseous emissions from housing facilities, but the longer residence time may then increase emissions during outside storage. This study examined CH4 and NH3 emissions from liquid pig manure (pig slurry) removed from the in-house slurry collection pits at three different frequencies, i.e., three times per week (T2.3), once per week (T7), or once after 40 days (T40, reference). The slurry from treatments T2.3 and T7 was transferred for outside storage weekly over four weeks, and slurry from treatment T40 once after 40 days, in connection with summer and winter production cycles with growing-finishing pigs. The slurry was stored in pilot-scale storage tanks with solid cover and continuous ventilation. Compared to T40, the treatments T2.3 and T7 increased CH4 emissions during outside storage, but in-house emissions were reduced even more, and the net effects on total CH4 emissions from manure management (housing unit and outside storage) were reductions of 18-41% in summer and 53-83% in winter. The frequent slurry export for outside storage led to more NH3 emissions, except for the treatment T2.3, which has slurry funnel inserts beneath the slatted floor. Measurements of in-vitro CH4 production rates suggested that shorter residence time for slurry in pig houses delayed the development of active methanogenic populations, and that this contributed to the reduction of CH4 emissions.

Effects of self-produced lactic fermentation (SPLF) on GHG and VSC emissions during swine slurry storage

Self-produced lactic fermentation (SPLF) is a new valued utilization technology, but its impact on gas emission remains unclear. The objective of this study is to investigate the effect of replacing the H2SO4 additive with SPLF on greenhouse gas (GHG), and volatile sulfur compound (VSC) emissions from swine slurry storage in a laboratory-scale study. In this study, SPLF is directed toward producing lactic acid (LA) through the anaerobic fermentation of slurry and apple waste under the most suitable conditions, with the LA concentration kept at 10,000-52000 mg COD/L and the pH remaining within 4.5 during the following 90 days of slurry storage. Compared with that in the slurry storage treatment (CK), the GHG emissions decreased by 86% and 87% in the SPLF and H2SO4 groups, respectively. The low pH (i.e., less than 4.5) inhibited the growth of Methanocorpusculum and Methanosarcina and resulted in very low mcrA gene copies in the SPLF group, leading to a reduction in CH4 emissions. The methanethiol, dimethyl sulfide, dimethyl disulfide, and H2S emissions in the SPLF group were reduced by 57%, 42%, 22%, and 87% and increased by 2206%, 61%, 173%, and 1856% in the H2SO4 group, respectively. Therefore, SPLF can be an innovative bioacidification technology for effectively reducing GHG and VSC emissions from animal slurry storage.

Uncertainty in non-CO2 greenhouse gas mitigation contributes to ambiguity in global climate policy feasibility

Despite its projected crucial role in stringent, future global climate policy, non-CO₂ greenhouse gas (NCGG) mitigation remains a large uncertain factor in climate research. A revision of the estimated mitigation potential has implications for the feasibility of global climate policy to reach the Paris Agreement climate goals. Here, we provide a systematic bottom-up estimate of the total uncertainty in NCGG mitigation, by developing 'optimistic', 'default' and 'pessimistic' long-term NCGG marginal abatement cost (MAC) curves, based on a comprehensive literature review of mitigation options. The global 1.5-degree climate target is found to be out of reach under pessimistic MAC assumptions, as is the 2-degree target under high emission assumptions. In a 2-degree scenario, MAC uncertainty translates into a large projected range in relative NCGG reduction (40-58%), carbon budget (±120 Gt CO₂) and policy costs (±16%). Partly, the MAC uncertainty signifies a gap that could be bridged by human efforts, but largely it indicates uncertainty in technical limitations.

Acidification of slurry to reduce ammonia and methane emissions: Deployment of a retrofittable system in fattening pig barns

Livestock farming, and in particular slurry management, is a major contributor to ammonia (NH₃) and methane (CH₄) emissions in Europe. Furthermore, reduced NH₃ and CH₄ emissions are also relevant in licensing procedures and the management of livestock buildings. Therefore, the aim is to keep emissions from the barn as low as possible. Acidification of slurry in the barn can reduce these environmental and climate-relevant emissions by a pH value of 5.5. In this study, an acidification technology was retrofitted in an existing fattening pig barn equipped with a partially slatted floor. The slurry in a compartment with 32 animals was acidified. An identical compartment was used for reference investigations (case-control approach). Several times a week slurry was pumped for acidification in a process tank outside the barn compartment in a central corridor, where sulphuric acid (H₂SO₄) was added. Then the slurry was pumped back into the barn. In contrast to other systems, where acidified slurry was stored mainly in external storage tanks, in this study the slurry was completely stored in the slurry channels under the slatted floor, during the entire fattening period. The emission mass flow of NH₃ and CH₄ was measured continuously over three fattening periods, with one period in spring and two periods in summer. On average 17.1 kg H₂SO₄ (96%) (m³ slurry)^-1 were used for acidification during the three fattening periods. NH₃ and CH₄ emissions were reduced by 39 and 67%, respectively. The hydrogen sulphide (H₂S) concentration in the barn air of the acidification compartment was harmlessly low (0.02 ppm). Thus, despite the storage of the acidified slurry in the barn, the system leads to a lower concentration of detrimental gases, which is beneficial for the animals' as well as for the workers' health. The study shows that it is possible to retrofit acidification technology into existing pig barns. Further investigations shall identify possible measures to reduce the amount of H₂SO₄ used and thus minimise the sulphur input into the slurry.

Black soldier fly larvae for organic manure recycling and its potential for a circular bioeconomy: A review

Livestock farming and its products provide a diverse range of benefits for our day-to-day life. However, the ever-increasing demand for farmed animals has raised concerns about waste management and its impact on the environment. Worldwide, cattle produce enormous amounts of manure, which is detrimental to soil properties if poorly managed. Waste management with insect larvae is considered one of the most efficient techniques for resource recovery from manure. In recent years, the use of black soldier fly larvae (BSFL) for resource recovery has emerged as an effective method. Using BSFL has several advantages over traditional methods, as the larvae produce a safe compost and extract trace elements like Cu and Zn. This paper is a comprehensive review of the potential of BSFL for recycling organic wastes from livestock farming, manure bioconversion, parameters affecting the BSFL application on organic farming, and process performance of biomolecule degradation. The last part discusses the economic feasibility, lifecycle assessment, and circular bioeconomy of the BSFL in manure recycling. Moreover, it discusses the future perspectives associated with the application of BSFL. Specifically, this review discusses BSFL cultivation and its impact on the larvae's physiology, gut biochemical physiology, gut microbes and metabolic pathways, nutrient conservation and global warming potential, microbial decomposition of organic nutrients, total and pathogenic microbial dynamics, and recycling of rearing residues as fertilizer.

Effect of storage and field acidification on emissions of NH3, NMVOC, and odour from field applied slurry in winter conditions

Land spreading of liquid animal manure (slurry) is a major source of atmospheric emissions. Ammonia (NH₃) emission is of concern, as it is one of the main contributors to ambient air pollution and nitrogen deposition. Storage and field acidification of the slurry prior to application is used to mitigate NH₃ emission, but the effect of acidification on emissions of odorous non-methane volatile organic compounds (NMVOC) has not been investigated, and there is a scarcity of data investigating the effect of field acidification. Four field experiments, two with cattle slurry and two with pig slurry, were performed. Ammonia and NMVOC emissions were measured simultaneously in a system of dynamic chambers and online measurements by cavity ring-down spectroscopy (CRDS) and proton-transfer-reaction mass spectrometry (PTR-MS). The system allowed for a high time resolution and low variation. All four experiments were performed under cold conditions (<10°C average temperature). Storage and field acidification significantly lowered the NH₃ emission by 79 ± 18% and 30 ± 6% on average, respectively. The NMVOC cumulative emission increased by 202 ± 133% and 17 ± 16% on average after storage and field acidification, respectively, even if the increase was only significant for storage acidification. Storage acidification significantly increased the emissions of odour at most measuring times. The increases of cumulative NMVOC emissions and odour was primarily caused by higher emissions of volatile fatty acids.

Agricultural Biogas Production—Climate and Environmental Impacts

Livestock manure is a major source of the greenhouse gases (GHGs) methane (CH4) and nitrous oxide (N2O). The emissions can be mitigated by production of biogas through anaerobic digestion (AD) of manure, mostly together with other biowastes, which can substitute fossil energy and thereby reduce CO2 emissions and postdigestion GHG emissions. This paper presents GHG balances for manure and biowaste management as affected by AD for five Danish biogas scenarios in which pig and cattle slurry were codigested with one or more of the following biomasses: deep litter, straw, energy crops, slaughterhouse waste, grass–clover green manure, and household waste. The calculated effects of AD on the GHG balance of each scenario included fossil fuel substitution, energy use for transport, leakage of CH4 from biogas production plants, CH4 emissions during storage of animal manure and biowaste, N2O emissions from stored and field applied biomass, N2O emissions related to nitrate (NO3−) leaching and ammonia (NH3) losses, N2O emissions from cultivation of energy crops, and soil C sequestration. All scenarios caused significant reductions in GHG emissions. Most of the reductions resulted from fossil fuel substitution and reduced emissions of CH4 during storage of codigestates. The total reductions in GHG emissions ranged from 65 to 105 kg CO2-eq ton−1 biomass. This wide range showed the importance of biomass composition. Reductions were highest when straw and grass–clover were used as codigestates, whereas reductions per unit energy produced were highest when deep litter or deep litter plus energy crops were used. Potential effects of iLUC were ignored but may have a negative impact on the GHG balance when using energy crops, and this may potentially exceed the calculated positive climate impacts of biogas production. The ammonia emission potential of digestate applied in the field is higher than that from cattle slurry and pig slurry because of the higher pH of the digestate. This effect, and the higher content of TAN in digestate, resulted in increasing ammonia emissions at 0.14 to 0.3 kg NH3-N ton−1 biomass. Nitrate leaching was reduced in all scenarios and ranged from 0.04 to 0.45 kg NO3-N ton−1 biomass. In the scenario in which maize silage was introduced, the maize production increased leaching and almost negated the effect of AD. Methane leakage caused a 7% reduction in the positive climate impact for each percentage point of leakage in a manure-based biogas scenario.

A mechanistic model of methane emission from animal slurry with a focus on microbial groups

Liquid manure (slurry) from livestock releases methane (CH4) that contributes significantly to global warming. Existing models for slurry CH4 production-used for mitigation and inventories-include effects of organic matter loading, temperature, and retention time but cannot predict important effects of management, or adequately capture essential temperature-driven dynamics. Here we present a new model that includes multiple methanogenic groups whose relative abundance shifts in response to changes in temperature or other environmental conditions. By default, the temperature responses of five groups correspond to those of four methanogenic species and one uncultured methanogen, although any number of groups could be defined. We argue that this simple mechanistic approach is able to describe both short- and long-term responses to temperature where other existing approaches fall short. The model is available in the open-source R package ABM (https://github.com/sashahafner/ABM) as a single flexible function that can include effects of slurry management (e.g., removal frequency and treatment methods) and changes in environmental conditions over time. Model simulations suggest that the reduction of CH4 emission by frequent emptying of slurry pits is due to washout of active methanogens. Application of the model to represent a full-scale slurry storage tank showed it can reproduce important trends, including a delayed response to temperature changes. However, the magnitude of predicted emission is uncertain, primarily as a result of sensitivity to the hydrolysis rate constant, due to a wide range in reported values. Results indicated that with additional work-particularly on the magnitude of hydrolysis rate-the model could be a tool for estimation of CH4 emissions for inventories.

Corn cobs efficiently reduced ammonia volatilization and improved nutrient value of stored dairy effluents

Dairy farms produce considerable quantities of nutrient-rich effluent, which is generally stored before use as a soil amendment. Unfortunately, a portion of the dairy effluent N can be lost through volatilization during open pond storage to the atmosphere. Adding of covering materials to effluent during storage could increase contact with NH₄⁺ and modify effluent pH, thereby reducing NH₃ volatilization and retaining the effluent N as fertilizer for crop application. Here the mitigation effect of cover materials on ammonia (NH₃) volatilization from open stored effluents was measured. A pilot-scale study was conducted using effluent collected at the Youran Dairy Farm Company Limited, Luhe County, Jiangsu, China, from 15 June to 15 August 2019. The study included seven treatments: control without amendment (Control), 30-mm × 25-mm corn cob pieces (CC), light expanded clay aggregate - LECA (CP), lactic acid (LA) and lactic acid plus CC (CCL), CP (CPL) or 20-mm plastic balls (PBL). The NH₃ emission from the Control treatment was 120.1 g N m^-2, which was increased by 38.1% in the CP treatment, possibly due to increased effluent pH. The application of CC reduced NH₃ loss by 69.2%, compared with the Control, possibly due to high physical resistance, adsorption of NH₄⁺ and effluent pH reduction. The lactic acid amendment alone and in combination with other materials also reduced NH₃ volatilization by 27.4% and 31.0-46.7%, respectively. After 62 days of storage, effluent N conserved in the CC and CCL treatments were 21.0% and 22.0% higher than that in the Control (P < 0.05). Our results suggest that application of corn cob pieces, alone or in combination with lactic acid, as effluent cover could effectively mitigate NH₃ volatilization and retain N, thereby enhancing the fertilizer value of the stored dairy effluent and co-applied as a soil amendment after two months open storage.

Black soldier fly reared on pig manure: Bioconversion efficiencies, nutrients in the residual material, greenhouse gas and ammonia emissions

There is an increased interest for using insects, such as the black soldier fly, to treat surplus manure and upcycle nutrients into the food system. Understanding the influence that BSFL have on nutrient flows and nutrient losses during manure bioconversion is key for sustainability assessments. Here we quantified and compared nutrient balances, nutrient levels in residual materials and emissions of greenhouse gases and ammonia between manure incubated with black soldier fly larvae (BSFL) and manure without BSFL, during a 9-day experimental period. We obtained high analytical recoveries, ranging between 95 and 103%. We found that of the pig manure supplied, 12.5% of dry matter (DM), 13% of carbon, 25% of nitrogen, 14% of energy, 8.5% of phosphorus and 9% of potassium was stored in BSFL body mass. When BSFL were present, more carbon dioxide (247 vs 148 g/kg of DM manure) and ammonia-nitrogen (7 vs 4.5 g/kg of DM manure) emitted than when larvae were absent. Methane, which was the main contributor to greenhouse gas emissions, was produced at the same levels (1.3 vs 1.1 g/kg of DM manure) in both treatments, indicating the main role that manure microbial methane emissions play. Nitrous oxide was negligible in both treatments. The uptake of nutrients by the larvae and the higher carbon dioxide and ammonia emissions modified the nutrient composition of the residual material substantially relative to the fresh manure. Our study provides a reliable basis to quantify the environmental impact of using BSFL in future life cycle assessments.

Sulfuric acid modified expanded vermiculite cover for reducing ammonia emissions from animal slurry storage

Animal slurry storage is an important source of NH₃ emission which has raised a high attention regarding its influence on air quality and environment health. There is an urgent need to develop an efficient, green and safe technology for reducing NH₃ emission. This study introduced a novel method of reducing NH₃ emission from dairy slurry storage using H₂SO₄ modified expanded vermiculite cover (H₂SO₄-VM1). Results showed that NH₃ mitigation of 87% was achieved in the treatment of H₂SO₄-VM1 during 77 days of slurry storage, which could be mainly caused by conversion of free NH₃ to NH₄⁺ in acidified slurry surface and vermiculite layer, the cover barrier for gases emissions, NH₄⁺ adsorption by vermiculite cover, and direct adsorption of free NH₃ in the vermiculite layer. The NH₃ mitigation of H₂SO₄-VM1 was comparable to that (90%) of the traditional method of H₂SO₄ acidification for slurry storage (H₂SO₄-AC1). The N₂O emission, H₂S emission, and H₂SO₄ consumption in H₂SO-VM1 were 28, 93 and 39% lower than those in H₂SO₄-AC1, respectively. Economic cost calculated based on material input in H₂SO-VM1 method was 0.40 USD m^-2 slurry. It's suggested that H₂SO₄-VM1 can be a possible alternative for reducing NH₃ emissions from animal slurry storage.

Combination of H2SO4-acidification and temperature-decrease for eco-friendly storage of pig slurry

Owing to the economic benefit and efficiency, H₂SO₄-acidification is often applied for reducing CH₄ emissions during storage of pig slurry (PS). However, it encounters with several problems related with safety and the concomitant H₂S emissions. To reduce the required amount of H₂SO₄, in this study, the storage at low temperature (20-35 °C) was applied to the mild-acidified PS (pH 6.5 and 7.0). 55.1 kg CO₂ eq./ton PS of CH₄ was emitted from the control (non-acidified at 35 °C), which was reduced to 14.4-40.2 kg CO₂ eq./ton PS at 20-30 °C. Temperature-decrease led to the increase of the abundance of methanogens (Methanobrevibacter and Methanolobus) that can grow at low temperature and the drop of specific methanogenic activity value. To achieve 70 % CH₄ reduction, 1.6 kg H₂SO₄/ton PS was needed in PS acidification, which was decreased to 0.5 kg H₂SO₄/ton PS by decreasing temperature from 35 °C to 25 °C. CH₄ production potential of the PS stored at 35 °C-pH 6.5 and 25 °C-pH 7.0 was increased by 21-33 % compared to the control. The GHG reduction of 33.6-41.9 kg CO₂ eq./ton PS and the profit of 6.6 USD/ton PS could be attained by applying acidification or combined storage, indicating that the temperature-decrease can be effectively combined with H₂SO₄-acidification.

Meta-Analysis of Strategies to Reduce NH3 Emissions from Slurries in European Agriculture and Consequences for Greenhouse Gas Emissions

The intensification of livestock production, to accommodate rising human population, has led to a higher emission of ammonia into the environment. For the reduction of ammonia emissions, different management steps have been reported in most EU countries. Some authors, however, have criticized such individual measures, because attempts to abate the emission of ammonia may lead to significant increases in either methane, nitrous oxide, or carbon dioxide. In this study, we carried out a meta-analysis of experimental European data published in peer-reviewed journals to evaluate the impact of major agricultural management practices on ammonia emissions, including the pollution swapping effect. The result of our meta-analysis showed that for the treatment, storage, and application stages, only slurry acidification was effective for the reduction of ammonia emissions (−69%), and had no pollution swapping effect with other greenhouse gases, like nitrous oxide (−21%), methane (−86%), and carbon dioxide (−15%). All other management strategies, like biological treatment, separation strategies, different storage types, the concealing of the liquid slurry with different materials, and variable field applications were effective to varying degrees for the abatement of ammonia emission, but also resulted in the increased emission of at least one other greenhouse gas. The strategies focusing on the decrease of ammonia emissions neglected the consequences of the emissions of other greenhouse gases. We recommend a combination of treatment technologies, like acidification and soil incorporation, and/or embracing emerging technologies, such as microbial inhibitors and slow release fertilizers.

Effects of livestock manure properties and temperature on the methanogen community composition and methane production during storage

Livestock slurry stored in ponds is an important source of methane emission, which is influenced by environmental factors. In this study, the effect of slurry properties and temperature on methane flux and methanogen community composition was investigated. The methanogen community composition in swine slurry was more sensitive to temperature and significantly different from that of cattle slurry (ANOSIM, P < 0.05), especially for the phylotypes affiliated with Methanobrevibacter, Methanocorpusculaceae and Methanocorpusculum. These different methanogen communities partially accounted for the differences in methane flux between swine and cattle slurries. Methanogen abundance seemed to not be affected by slurry properties or temperature, but the mcrA (encoding the alpha subunit of methyl coenzyme M reductase) transcript/gene ratio was significantly increased at 30°C and was higher in swine slurry than in cattle slurry (t-test, P < 0.05). This study reveals that higher temperatures increased methane production by promoting the transcription of mcrA rather than by increasing methanogen cell numbers.

Meta-analysis of the effects of overexpression of WRKY transcription factors on plant responses to drought stress

BACKGROUND

The tryptophan-arginine-lysine-tyrosine (WRKY) transcription factors play important roles in plants, allowing them to adapt to environmental conditions that are not normally conducive to plant growth; in particular, drought. There has been extensive research on WRKY transcription factors and the effects of their overexpression in plants on resistance to drought stress. However, due to the materials (the type and species of donor and receptor, promoters) and treatments (the type and time of stress) used, different and often confounding results have been obtained between studies. Meta-analysis is a powerful statistical tool that can be used to summarize results from numerous independent experiments on the same research topic while accounting for variability across experiments.

RESULTS

We carried out a meta-analysis of 16 measured parameters that affect drought resistance in plants overexpressing WRKY transcription factors and wild-type plants. We found that only one of these parameters was significantly different between transgenic and wild-type plants under drought and control conditions at a 95% confidence interval (p = 0.000, p = 0.009, respectively). Eleven of the sixteen parameters were obviously different in WRKY transgenic plants under drought and control conditions (SV, p = 0.023, SSC, p = 0.000, SOD, p = 0.012, SFW, p = 0.000, RL, p = 0.016, Pro, p = 0.000, POD, p = 0.027, MDA, p = 0.000, H2O2, p = 0.003, EL, p = 0.000, CHC, p = 0.000, respectively), seven of the eleven obviously different parameters showed positive effect (SSC, SOD, Pro, POD, MDA, H2O2, EL), four of them revealed negative effect (SV, SFW, RL, CHC).

CONCLUSION

We have found that only one of these parameters was significantly different between transgenic and wild-type plants under drought and control conditions respectively, at a 95% confidence interval. And eleven of sixteen parameters showed obviously different of WRKY-overexpressed plants under different conditions (water-stressed and normal), suggesting that WRKY transcription factors play an important role in plant responses to drought stress. These findings also provide a theoretical basis for further study of the role of WRKY transcription factors in the regulation of plant responses to environmental stress.

Potential for mitigating global agricultural ammonia emission: A meta-analysis

Ammonia (NH₃) emission from agricultural sources has contributed significantly to air pollution, soil acidification, water eutrophication, biodiversity loss, and declining human health. Although there are numerous strategies for reducing NH₃ emission from agricultural systems, the effectiveness of these measures is highly variable. Furthermore, the integrated assessment of measures to reduce NH₃ emission both from livestock production and cropping systems based on animal and crop type is lacking. Therefore, we conducted a global meta-analysis and integrated assessment of measures to reduce NH₃ emission from agricultural systems. Most of the studied mitigation strategies were effective in reducing NH₃ emission. In the livestock production system, dietary additive, urease inhibitor (UI), manure acidification and deep manure placement have the highest mitigation potential relative to other mitigation strategies, with reduction ranges of 35.1-54.2%, 24.3-68.7%, 88.8-95.0%, and 93.8-99.7%, respectively, relative to the control, while manure storage management could significantly reduce NH₃ emission by 70.0-82.1%. In the cropping system, fertilizer source, use of enhanced efficiency fertilizers, and method of field application are most effective for reducingNH₃ emission. The use of ammonium nitrate, controlled release fertilizer (CRF), and deep placement of fertilizers could reduce NH₃ emission by 88.3, 56.8, and 48.0%, respectively. Choosing a proper fertilizer is critical for decreasing NH₃ emission from cropping systems. We conclude that carefully planned and adopted strategies suited for local conditions are promising for minimizing NH₃ emission from agricultural systems on a global scale, while possible effects of those mitigation measures on the emission of greenhouse gases should be studied in the future.

Reduction in Methane Emissions From Acidified Dairy Slurry Is Related to Inhibition of Methanosarcina Species

Liquid dairy manure treated with sulfuric acid was stored in duplicate pilot-scale storage tanks for 120 days with continuous monitoring of CH₄ emissions and concurrent examination of changes in the structure of bacterial and methanogenic communities. Methane emissions were monitored at the site using laser-based Trace Gas Analyzer whereas quantitative real-time polymerase chain reaction and massively parallel sequencing were employed to study bacterial and methanogenic communities using 16S rRNA and methyl-coenzyme M Reductase A (mcrA) genes/transcripts, respectively. When compared with untreated slurries, acidification resulted in 69–84% reductions of cumulative CH₄ emissions. The abundance, activity, and proportion of bacterial communities did not vary with manure acidification. However, the abundance and activity of methanogens (as estimated from mcrA gene and transcript copies, respectively) in acidified slurries were reduced by 6 and 20%, respectively. Up to 21% reduction in mcrA transcript/gene ratios were also detected in acidified slurries. Regardless of treatment, Methanocorpusculum predominated archaeal 16S rRNA and mcrA gene and transcript libraries. The proportion of Methanosarcina, which is the most metabolically-diverse methanogen, was the significant discriminant feature between acidified and untreated slurries. In acidified slurries, the relative proportions of Methanosarcina were ≤ 10%, whereas in untreated slurries, it represented up to 24 and 53% of the mcrA gene and transcript libraries, respectively. The low proportions of Methanosarcina in acidified slurries coincided with the reductions in CH₄ emissions. The results suggest that reduction of CH₄ missions achieved by acidification was due to an inhibition of the growth and activity of Methanosarcina species.

Sodium Persulfate and Potassium Permanganate Inhibit Methanogens and Methanogenesis in Stored Liquid Dairy Manure

Stored liquid dairy manure is a hotspot for methane (CH) emission, thus effective mitigation strategies are required. We assessed sodium persulfate (NaSO), potassium permanganate (KMnO), and sodium hypochlorite (NaOCl) for impacts on the abundance of microbial communities and CH production in liquid dairy manure. Liquid dairy manure treated with different rates (1, 3, 6, and 9 g or mL L slurry) of these chemicals or their combinations were incubated under anoxic conditions at 22.5 ± 1.3°C for 120 d. Untreated and sodium 2-bromoethanesulfonate (BES)-treated manures were included as negative and positive controls, respectively, whereas sulfuric acid (HSO)-treated manure was used as a reference. Quantitative real-time polymerase chain reaction was used to quantify the abundances of bacteria and methanogens on Days 0, 60, and 120. Headspace CH/CO ratios were used as a proxy to determine CH production. Unlike bacterial abundance, methanogen abundance and CH/CO ratios varied with treatments. Addition of 1 to 9 g L slurry of NaSO and KMnO reduced methanogen abundance (up to ∼28%) and peak CH/CO ratios (up to 92-fold). Except at the lowest rate, chemical combinations also reduced the abundance of methanogens (up to ∼17%) and CH/CO ratios (up to ninefold), although no impacts were observed when 3% NaOCl was used alone. With slurry acidification, the ratios reduced up to twofold, whereas methanogen abundance was unaffected. Results suggest that NaSO and KMnO may offer alternative options to reduce CH emission from stored liquid dairy manure, but this warrants further assessment at larger scales for environmental impacts and characteristics of the treated manure.

Greenhouse Gas and Ammonia Emissions from Different Stages of Liquid Manure Management Chains: Abatement Options and Emission Interactions

Farm livestock manure is an important source of ammonia and greenhouse gases. Concerns over the environmental impact of emissions from manure management have resulted in research efforts focusing on emission abatement. However, questions regarding the successful abatement of manure-related emissions remain. This study uses a meta-analytical approach comprising 89 peer-reviewed studies to quantify emission reduction potentials of abatement options for liquid manure management chains from cattle and pigs. Analyses of emission reductions highlight the importance of accounting for interactions between emissions. Only three out of the eight abatement options considered (frequent removal of manure, anaerobic digesters, and manure acidification) reduced ammonia (3-60%), nitrous oxide (21-55%), and methane (29-74%) emissions simultaneously, whereas in all other cases, tradeoffs were identified. The results demonstrate that a shift from single-stage emission abatement options towards a whole-chain perspective is vital in reducing overall emissions along the manure management chain. The study also identifies some key elements like proper clustering, reporting of influencing factors, and explicitly describing assumptions associated with abatement options that can reduce variability in emission reduction estimates. Prioritization of abatement options according to their functioning can help to determine low-risk emission reduction options, specifically options that alter manure characteristics (e.g., reduced protein diets, anaerobic digestion, or slurry acidification). These insights supported by comprehensive emission measurement studies can help improve the effectiveness of emission abatement and harmonize strategies aimed at reducing air pollution and climate change simultaneously.

Transformation of Organic Matter and the Emissions of Methane and Ammonia during Storage of Liquid Manure as Affected by Acidification

Acidification of livestock manure can reduce emission of the greenhouse gases methane (CH) and nitrous oxide (NO), as well as ammonia (NH). We examined the relation between emission of these gases and transformation of organic matter as affected by acidification. Liquid cattle manure was acidified with sulfuric acid to pH 5.5 at a pilot scale (100 L), and we measured effects on CH, NO, CO and NH emissions and on transformation of pH buffer components and organic matter. Acidification reduced NH emissions by 62% (47 d) and emission of CH by 68% (57 d). Emissions of NO were negligible, probably due to the absence of a surface crust. Reductions in NH and CH emission were highest at the start but declined over time concomitantly with a gradual increase in the stored liquid manure pH. Acidification did not significantly affect CO emissions. Emission of CO was high, five- to ten-fold of CH emissions, until Day 16 of storage, after which the CO emission rate declined to around twice the CH emission rate; consequently, the majority of C loss during the early stages of storage was CO. Cumulative emission of C in CO and CH closely matched depletion of dissolved organic carbon (DOC), suggesting that DOC may be a predictor for CH emission from dilute slurries. volatile fatty acid and total ammoniacal nitrogen concentrations in surface layers were substantially higher than at the center of stored liquid manure, perhaps resulting from microbial activity at the surface. This pattern deserves attention when predicting NH emission from stored slurry.

Mitigating Greenhouse Gas and Ammonia Emissions from Swine Manure Management: A System Analysis

Gaseous emissions from animal manure are considerable contributor to global ammonia (NH₃) and agriculture greenhouse gas (GHG) emissions. Given the demand to promote mitigation of GHGs while fostering sustainable development of the Paris Agreement, an improvement of management systems is urgently needed to help mitigate climate change and to improve atmospheric air quality. This study presents a meta-analysis and an integrated assessment of gaseous emissions and mitigation potentials for NH₃, methane (CH₄), and nitrous oxide (N₂O) (direct and indirect) losses from four typical swine manure management systems (MMSs). The resultant emission factors and mitigation efficiencies allow GHG and NH₃ emissions to be estimated, as well as mitigation potentials for different stages of swine operation. In particular, changing swine manure management from liquid systems to solid-liquid separation systems, coupled with mitigation measures, could simultaneously reduce GHG emissions by 65% and NH₃ emissions by 78%. The resultant potential reduction in GHG emissions from China's pig production alone is greater than the entire GHG emissions from agricultural sector of France, Australia, or Germany, while the reduction in NH₃ emissions is equivalent to 40% of the total NH₃ emissions from the European Union. Thus, improved swine manure management could have a significant impact on global environment issues.

Greenhouse Gas and Ammonia Emissions from Slurry Storage: Impacts of Temperature and Potential Mitigation through Covering (Pig Slurry) or Acidification (Cattle Slurry)

Storage of livestock slurries is a significant source of methane (CH) and ammonia (NH) emissions to the atmosphere, for which accurate quantification and potential mitigation methods are required. Methane and NH emissions were measured from pilot-scale cattle slurry (CS) and pig slurry (PS) stores under cool, temperate, and warm conditions (approximately 8, 11, and 17°C, respectively) and including two potential mitigation practices: (i) a clay granule floating cover (PS) and (ii) slurry acidification (CS). Cumulative emissions of both gases were influenced by mean temperature over the storage period. Methane emissions from the control treatments over the 2-mo storage periods for the cool, temperate, and warm periods were 0.3, 0.1, and 34.3 g CH kg slurry volatile solids for CS and 4.4, 20.1, and 27.7 g CH kg slurry volatile solids for PS. Respective NH emissions for each period were 4, 7, and 12% of initial slurry N content for CS and 12, 18, and 28% of initial slurry N content for PS. Covering PS with clay granules reduced NH emissions by 77% across the three storage periods but had no impact on CH emissions. Acidification of CS reduced CH and NH emissions by 61 and 75%, respectively, across the three storage periods. Nitrous oxide emissions were also monitored but were insignificant. The development of approaches that take into account the influence of storage timing (temperature) and duration on emission estimates for national emission inventory purposes is recommended.

Temperature response of methane production in liquid manures and co-digestates

Intensification of livestock production makes correct estimation of methanogenesis in liquid manure increasingly important for inventories of CH4 emissions. Such inventories currently rely on fixed methane conversion factors as knowledge gaps remain with respect to detailed temperature responses of CH4 emissions from liquid manure. Here, we describe the temperature response of CH4 production in liquid cattle slurry, pig slurry, and fresh and stored co-digested slurry from a thermophilic biogas plant. Subsamples of slurry were anoxically incubated at 20 temperatures from 5-52°C in a temperature gradient incubator and CH4 production was measured by gas chromatographic analysis of headspace gas after a 17-h incubation period. Methane production potentials at 5-37°C were described by the Arrhenius equation (modelling efficiencies, 79.2-98.1%), and the four materials showed a consistent activation energy (Ea) which averaged 81.0kJmol(-1) (95% confidence interval, 74.9-87.1kJmol(-1)) corresponding to a temperature sensitivity (Q10) of 3.4. In contrast, the frequency factor (A) differed among the slurry materials (30.1<ln A<33.3; mean, 31.3) reflecting that origin, age and composition of the manure affect this parameter. The Ea estimate, based on individual slurry materials, was intermediate when compared to published values of 63 and 112.7kJmol(-1) derived from composite data, but was similar to Ea estimated for CH4 production at microbial community level across aquatic ecosystems, wetlands and rice paddies (89.3kJmol(-1)). This supports that the derived temperature sensitivity parameters may be applicable to dynamic modelling of CH4 emissions from livestock manure.

Phylogenetic and genomic analysis of Methanomassiliicoccales in wetlands and animal intestinal tracts reveals clade-specific habitat preferences

Methanogenic Thermoplasmata of the novel order Methanomassiliicoccales were recently discovered in human and animal gastro-intestinal tracts (GITs). However, their distribution in other methanogenic environments has not been addressed systematically. Here, we surveyed Methanomassiliicoccales presence in wetland soils, a globally important source of methane emissions to the atmosphere, and in the GITs of different animals by PCR targeting their 16S rRNA and methyl:coenzyme M reductase (α-subunit) genes. We detected Methanomassiliicoccales in all 16 peat soils investigated, indicating their wide distribution in these habitats. Additionally, we detected their genes in various animal faeces. Methanomassiliicoccales were subdivided in two broad phylogenetic clades designated 'environmental' and 'GIT' clades based on differential, although non-exclusive, habitat preferences of their members. A well-supported cluster within the environmental clade comprised more than 80% of all wetland 16S rRNA gene sequences. Metagenome assembly from bovine rumen fluid enrichments resulted in two almost complete genomes of both Methanomassiliicoccales clades. Comparative genomics revealed that members of the environmental clade contain larger genomes and a higher number of genes encoding anti-oxidative enzymes than animal GIT clade representatives. This study highlights the wide distribution of Methanomassiliicoccales in wetlands, which suggests that they contribute to methane emissions from these climate-relevant ecosystems.

Mitigation of ammonia, nitrous oxide and methane emissions from manure management chains: a meta-analysis and integrated assessment

Livestock manure contributes considerably to global emissions of ammonia (NH3 ) and greenhouse gases (GHG), especially methane (CH4 ) and nitrous oxide (N2 O). Various measures have been developed to mitigate these emissions, but most of these focus on one specific gas and/or emission source. Here, we present a meta-analysis and integrated assessment of the effects of mitigation measures on NH3 , CH4 and (direct and indirect) N2 O emissions from the whole manure management chain. We analysed the effects of mitigation technologies on NH3 , CH4 and N2 O emissions from individual sources statistically using results of 126 published studies. Whole-chain effects on NH3 and GHG emissions were assessed through scenario analysis. Significant NH3 reduction efficiencies were observed for (i) housing via lowering the dietary crude protein (CP) content (24-65%, compared to the reference situation), for (ii) external slurry storages via acidification (83%) and covers of straw (78%) or artificial films (98%), for (iii) solid manure storages via compaction and covering (61%, compared to composting), and for (iv) manure application through band spreading (55%, compared to surface application), incorporation (70%) and injection (80%). Acidification decreased CH4 emissions from stored slurry by 87%. Significant increases in N2 O emissions were found for straw-covered slurry storages (by two orders of magnitude) and manure injection (by 26-199%). These side-effects of straw covers and slurry injection on N2 O emission were relatively small when considering the total GHG emissions from the manure chain. Lowering the CP content of feed and acidifying slurry are strategies that consistently reduce NH3 and GHG emissions in the whole chain. Other strategies may reduce emissions of a specific gas or emissions source, by which there is a risk of unwanted trade-offs in the manure management chain. Proper farm-scale combinations of mitigation measures are important to minimize impacts of livestock production on global emissions of NH3 and GHG.