1
|
Bruhn D, Griffin KL, Møller IM. Importance of Timing of Dark Acclimation for Estimating Light Inhibition of Leaf Respiratory CO 2 Efflux. PLANT, CELL & ENVIRONMENT 2025; 48:3151-3158. [PMID: 39704034 DOI: 10.1111/pce.15335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Revised: 11/20/2024] [Accepted: 12/04/2024] [Indexed: 12/21/2024]
Abstract
SUMMARY STATEMENTThe degree of inhibition of leaf respiration by light is often studied, but the methods used and the results obtained are variable. We suggest that in the future daytime leaf respiration is measured 3 min after dark acclimation to avoid under‐estimating the degree of light inhibition of leaf respiration. This will most likely speed up future surveys and perhaps also result in less inter‐study variation in the calculated degree of light inhibition of leaf respiration.
Collapse
Affiliation(s)
- Dan Bruhn
- Department of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark
| | - Kevin L Griffin
- Department of Earth and Environmental Sciences, Columbia University, New York, New York, USA
- Department of Ecology, Evolution and Environmental Biology, Columbia University, New York, New York, USA
- Lamont-Doherty Earth Observatory, Columbia University, New York, New York, USA
| | - Ian M Møller
- Department of Molecular Biology and Genetics, Aarhus University, Slagelse, Denmark
| |
Collapse
|
2
|
Xu Y, Kaste JAM, Weise SE, Shachar-Hill Y, Sharkey TD. The effects of photosynthetic rate on respiration in light, starch/sucrose partitioning, and other metabolic fluxes within photosynthesis. Sci Rep 2025; 15:8389. [PMID: 40069307 PMCID: PMC11897357 DOI: 10.1038/s41598-025-88574-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Accepted: 01/29/2025] [Indexed: 03/15/2025] Open
Abstract
In the future, plants may encounter increased light and elevated CO2 levels. How consequent alterations in photosynthetic rates will impact fluxes in photosynthetic carbon metabolism remains uncertain. Respiration in light (RL) is pivotal in plant carbon balance and a key parameter in photosynthesis models. Understanding the dynamics of photosynthetic metabolism and RL under varying environmental conditions is essential for optimizing plant growth and agricultural productivity. However, measuring RL under high light and high CO2 (HLHC) conditions poses challenges using traditional gas exchange methods. In this study, we employed isotopically nonstationary metabolic flux analysis (INST-MFA) to estimate RL and investigate photosynthetic carbon flux, unveiling nuanced adjustments in Camelina sativa under HLHC. Despite numerous flux alterations in HLHC, RL remained stable. HLHC affects several factors influencing RL, such as starch and sucrose partitioning, vo/vc ratio, triose phosphate partitioning, and hexose kinase activity. Analysis of A/Ci curve operational points reveals that HLHC's major changes primarily stem from CO2 suppressing photorespiration. Integration of these fluxes into a simplified model predicts changes in CBC labeling under HLHC. This study extends our prior discovery that incomplete CBC labeling is due to unlabeled carbon reimported during RL, offering insights into manipulating labeling through adjustments in photosynthetic rates.
Collapse
Affiliation(s)
- Yuan Xu
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, 48824, USA
| | - Joshua A M Kaste
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA
- Department of Civil and Environmental Engineering, University of Illinois Urbana-Champaign, 205 N Matthews Ave, Urbana, IL, 61801, USA
| | - Sean E Weise
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA
| | - Yair Shachar-Hill
- Department of Plant Biology, Michigan State University, East Lansing, MI, 48824, USA
| | - Thomas D Sharkey
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, 48824, USA.
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.
- Plant Resilience Institute, Michigan State University, East Lansing, MI, 48824, USA.
| |
Collapse
|
3
|
Yu YZ, Ma WT, Wang X, Tcherkez G, Schnyder H, Gong XY. Reconciling water-use efficiency estimates from carbon isotope discrimination of leaf biomass and tree rings: nonphotosynthetic fractionation matters. THE NEW PHYTOLOGIST 2024; 244:2225-2238. [PMID: 39360441 DOI: 10.1111/nph.20170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Accepted: 09/16/2024] [Indexed: 10/04/2024]
Abstract
Carbon isotope discrimination (∆) in leaf biomass (∆BL) and tree rings (∆TR) provides important proxies for plant responses to climate change, specifically in terms of intrinsic water-use efficiency (iWUE). However, the nonphotosynthetic 12C/13C fractionation in plant tissues has rarely been quantified and its influence on iWUE estimation remains uncertain. We derived a comprehensive, ∆ based iWUE model (iWUEcom) which includes nonphotosynthetic fractionations (d) and characterized tissue-specific d-values based on global compilations of data of ∆BL, ∆TR and real-time ∆ in leaf photosynthesis (∆online). iWUEcom was further validated with independent datasets. ∆BL was larger than ∆online by 2.53‰, while ∆BL and ∆TR showed a mean offset of 2.76‰, indicating that ∆TR is quantitatively very similar to ∆online. Applying the tissue-specific d-values (dBL = 2.5‰, dTR = 0‰), iWUE estimated from ∆BL aligned well with those estimated from ∆TR or gas exchange. ∆BL and ∆TR showed a consistent iWUE trend with an average CO2 sensitivity of 0.15 ppm ppm-1 during 1975-2015. Accounting for nonphotosynthetic fractionations improves the estimation of iWUE based on isotope records in leaf biomass and tree rings, which is ultimate for inferring changes in carbon and water cycles under historical and future climate.
Collapse
Affiliation(s)
- Yong Zhi Yu
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, College of Geographical Sciences, Fujian Normal University, Fuzhou, 350007, China
| | - Wei Ting Ma
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, College of Geographical Sciences, Fujian Normal University, Fuzhou, 350007, China
| | - Xuming Wang
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, College of Geographical Sciences, Fujian Normal University, Fuzhou, 350007, China
| | - Guillaume Tcherkez
- Institut de Recherche en Horticulture et Semences, Université d'Angers, 42 rue Georges Morel, Beaucouzé, 49070, France
- Research School of Biology, ANU College of Sciences, Australian National University, Canberra, ACT, 2601, Australia
| | - Hans Schnyder
- Lehrstuhl für Grünlandlehre, Technische Universität München, Alte Akademie 12, Freising, 85354, Germany
| | - Xiao Ying Gong
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, College of Geographical Sciences, Fujian Normal University, Fuzhou, 350007, China
- Fujian Provincial Key Laboratory for Plant Eco-physiology, Fuzhou, 350007, China
| |
Collapse
|
4
|
Joffe R, Tosens T, Berthe A, Jolivet Y, Niinemets Ü, Gandin A. Reduced mesophyll conductance under chronic O 3 exposure in poplar reflects thicker cell walls and increased subcellular diffusion pathway lengths according to the anatomical model. PLANT, CELL & ENVIRONMENT 2024; 47:4815-4832. [PMID: 39101376 DOI: 10.1111/pce.15049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2023] [Revised: 06/23/2024] [Accepted: 07/04/2024] [Indexed: 08/06/2024]
Abstract
Ozone (O3) is one of the most harmful and widespread air pollutants, affecting crop yield and plant health worldwide. There is evidence that O3 reduces the major limiting factor of photosynthesis, namely CO2 mesophyll conductance (gm), but there is little quantitative information of O3-caused changes in key leaf anatomical traits and their impact on gm. We exposed two O3-responsive clones of the economically important tree species Populus × canadensis Moench to 120 ppb O3 for 21 days. An anatomical diffusion model within the leaf was used to analyse the entire CO2 diffusion pathway from substomatal cavities to carboxylation sites and determine the importance of each structural and subcellular component as a limiting factor. gm decreased substantially under O3 and was found to be the most important limitation of photosynthesis. This decrease was mostly driven by an increased cell wall thickness and length of subcellular diffusion pathway caused by altered interchloroplast spacing and chloroplast positioning. By contrast, the prominent leaf integrative trait leaf dry mass per area was neither affected nor related to gm under O3. The observed relationship between gm and anatomy, however, was clone-dependent, suggesting that mechanisms regulating gm may differ considerably between closely related plant lines. Our results confirm the need for further studies on factors constraining gm under stress conditions.
Collapse
Affiliation(s)
- Ricardo Joffe
- Faculté des Sciences et Technologies, Université de Lorraine, AgroParisTech, INRAE, SILVA, Nancy, France
| | - Tiina Tosens
- Department of Crop Science and Plant Biology, Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Tartu, Estonia
| | - Audrey Berthe
- Faculté des Sciences et Technologies, Université de Lorraine, AgroParisTech, INRAE, SILVA, Nancy, France
| | - Yves Jolivet
- Faculté des Sciences et Technologies, Université de Lorraine, AgroParisTech, INRAE, SILVA, Nancy, France
| | - Ülo Niinemets
- Department of Crop Science and Plant Biology, Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Tartu, Estonia
- Estonian Academy of Sciences, Tallinn, Estonia
| | - Anthony Gandin
- Faculté des Sciences et Technologies, Université de Lorraine, AgroParisTech, INRAE, SILVA, Nancy, France
| |
Collapse
|
5
|
Xu Y, Schmiege SC, Sharkey TD. The oxidative pentose phosphate pathway in photosynthesis: a tale of two shunts. THE NEW PHYTOLOGIST 2024; 242:2453-2463. [PMID: 38567702 DOI: 10.1111/nph.19730] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Accepted: 03/17/2024] [Indexed: 05/24/2024]
Abstract
CO2 release in the light (RL) and its presumed source, oxidative pentose phosphate pathways, were found to be insensitive to CO2 concentration. The oxidative pentose phosphate pathways form glucose 6-phosphate (G6P) shunts that bypass the nonoxidative pentose phosphate reactions of the Calvin-Benson cycle. Using adenosine diphosphate glucose and uridine diphosphate glucose as proxies for labeling of G6P in the stroma and cytosol respectively, it was found that only the cytosolic shunt was active. Uridine diphosphate glucose, a proxy for cytosolic G6P, and 6-phosphogluconate (6PG) were significantly less labeled than Calvin-Benson cycle intermediates in the light. But ADP glucose, a proxy for stromal G6P, is labeled to the same degree as Calvin-Benson cycle intermediates and much greater than 6PG. A metabolically inert pool of sedoheptulose bisphosphate can slowly equilibrate keeping the label in sedoheptulose lower than in other stromal metabolites. Finally, phosphorylation of fructose 6-phosphate (F6P) in the cytosol can allow some unlabeled carbon in cytosolic F6P to dilute label in phosphenolpyruvate. The results clearly show that there is oxidative pentose phosphate pathway activity in the cytosol that provides a shunt around the nonoxidative pentose phosphate pathway reactions of the Calvin-Benson cycle and is not strongly CO2-sensitive.
Collapse
Affiliation(s)
- Yuan Xu
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, 48824, USA
| | - Stephanie C Schmiege
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, 48824, USA
- Plant Resilience Institute, Michigan State University, East Lansing, MI, 48824, USA
- Department of Biology, Western University, London, ON, N6A 5B7, Canada
| | - Thomas D Sharkey
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, 48824, USA
- Plant Resilience Institute, Michigan State University, East Lansing, MI, 48824, USA
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA
| |
Collapse
|
6
|
Abadie C, Lalande J, Dourmap C, Limami AM, Tcherkez G. Leaf day respiration involves multiple carbon sources and depends on previous dark metabolism. PLANT, CELL & ENVIRONMENT 2024; 47:2146-2162. [PMID: 38444114 DOI: 10.1111/pce.14871] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 02/06/2024] [Accepted: 02/20/2024] [Indexed: 03/07/2024]
Abstract
Day respiration (Rd) is the metabolic, nonphotorespiratory process by which illuminated leaves liberate CO2 during photosynthesis. Rd is used routinely in photosynthetic models and is thus critical for calculations. However, metabolic details associated with Rd are poorly known, and this can be problematic to predict how Rd changes with environmental conditions and relates to night respiration. It is often assumed that day respiratory CO2 release just reflects 'ordinary' catabolism (glycolysis and Krebs 'cycle'). Here, we carried out a pulse-chase experiment, whereby a 13CO2 pulse in the light was followed by a chase period in darkness and then in the light. We took advantage of nontargeted, isotope-assisted metabolomics to determine non-'ordinary' metabolism, detect carbon remobilisation and compare light and dark 13C utilisation. We found that several concurrent metabolic pathways ('ordinary' catabolism, oxidative pentose phosphates pathway, amino acid production, nucleotide biosynthesis and secondary metabolism) took place in the light and participated in net CO2 efflux associated with day respiration. Flux reconstruction from metabolomics leads to an underestimation of Rd, further suggesting the contribution of a variety of CO2-evolving processes. Also, the cornerstone of the Krebs 'cycle', citrate, is synthetised de novo from photosynthates mostly in darkness, and remobilised or synthesised from stored material in the light. Collectively, our data provides direct evidence that leaf day respiration (i) involves several CO2-producing reactions and (ii) is fed by different carbon sources, including stored carbon disconnected from current photosynthates.
Collapse
Affiliation(s)
- Cyril Abadie
- Institut de recherche en horticulture et semences, INRAe, Université d'Angers, Beaucouzé, France
- Ecophysiologie et génomique fonctionnelle de la vigne, Institut des Sciences de la Vigne et du Vin, INRAe, Université de Bordeaux, Villenave-d'Ornon, France
| | - Julie Lalande
- Institut de recherche en horticulture et semences, INRAe, Université d'Angers, Beaucouzé, France
| | - Corentin Dourmap
- Institut de recherche en horticulture et semences, INRAe, Université d'Angers, Beaucouzé, France
| | - Anis M Limami
- Institut de recherche en horticulture et semences, INRAe, Université d'Angers, Beaucouzé, France
| | - Guillaume Tcherkez
- Institut de recherche en horticulture et semences, INRAe, Université d'Angers, Beaucouzé, France
- Research School of Biology, ANU College of Science, Australian National University, Canberra, Australia
| |
Collapse
|
7
|
Li X, Chen X, Li J, Wu P, Hu D, Zhong Q, Cheng D. Respiration in light of evergreen and deciduous woody species and its links to the leaf economic spectrum. TREE PHYSIOLOGY 2024; 44:tpad129. [PMID: 37847610 DOI: 10.1093/treephys/tpad129] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Revised: 10/05/2023] [Accepted: 10/11/2023] [Indexed: 10/19/2023]
Abstract
Leaf respiration in the light (Rlight) is crucial for understanding the net CO2 exchange of individual plants and entire ecosystems. However, Rlight is poorly quantified and rarely discussed in the context of the leaf economic spectrum (LES), especially among woody species differing in plant functional types (PFTs) (e.g., evergreen vs. deciduous species). To address this gap in our knowledge, Rlight, respiration in the dark (Rdark), light-saturated photosynthetic rates (Asat), leaf dry mass per unit area (LMA), leaf nitrogen (N) and phosphorus (P) concentrations, and maximum carboxylation (Vcmax) and electron transport rates (Jmax) of 54 representative subtropical woody evergreen and deciduous species were measured. With the exception of LMA, the parameters quantified in this study were significantly higher in deciduous species than in evergreen species. The degree of light inhibition did not significantly differ between evergreen (52%) and deciduous (50%) species. Rlight was significantly correlated with LES traits such as Asat, Rdark, LMA, N and P. The Rlight vs. Rdark and N relationships shared common slopes between evergreen and deciduous species, but significantly differed in their y-intercepts, in which the rates of Rlight were slower or faster for any given Rdark or N in deciduous species, respectively. A model for Rlight based on three traits (i.e., Rdark, LMA and P) had an explanatory power of 84.9%. These results show that there is a link between Rlight and the LES, and highlight that PFTs is an important factor in affecting Rlight and the relationships of Rlight with Rdark and N. Thus, this study provides information that can improve the next generation of terrestrial biosphere models (TBMs).
Collapse
Affiliation(s)
- Xueqin Li
- Institute of Geography, Fujian Normal University, No.8 Shangsan Road, Cangshan District, Fuzhou, Fujian 350007, China
| | - Xiaoping Chen
- Institute of Geography, Fujian Normal University, No.8 Shangsan Road, Cangshan District, Fuzhou, Fujian 350007, China
- Fujian Provincial Key Laboratory of Plant Ecophysiology, Fujian Normal University, No. 8 Shangsan Road, Cangshan District, Fuzhou, Fujian 350007, China
| | - Jinlong Li
- Institute of Geography, Fujian Normal University, No.8 Shangsan Road, Cangshan District, Fuzhou, Fujian 350007, China
| | - Panpan Wu
- Institute of Geography, Fujian Normal University, No.8 Shangsan Road, Cangshan District, Fuzhou, Fujian 350007, China
| | - Dandan Hu
- Institute of Geography, Fujian Normal University, No.8 Shangsan Road, Cangshan District, Fuzhou, Fujian 350007, China
| | - Quanlin Zhong
- Institute of Geography, Fujian Normal University, No.8 Shangsan Road, Cangshan District, Fuzhou, Fujian 350007, China
| | - Dongliang Cheng
- Institute of Geography, Fujian Normal University, No.8 Shangsan Road, Cangshan District, Fuzhou, Fujian 350007, China
- Fujian Provincial Key Laboratory of Plant Ecophysiology, Fujian Normal University, No. 8 Shangsan Road, Cangshan District, Fuzhou, Fujian 350007, China
| |
Collapse
|
8
|
Zheng DM, Wang X, Liu Q, Sun YR, Ma WT, Li L, Yang Z, Tcherkez G, Adams MA, Yang Y, Gong XY. Temperature responses of leaf respiration in light and darkness are similar and modulated by leaf development. THE NEW PHYTOLOGIST 2024; 241:1435-1446. [PMID: 37997699 DOI: 10.1111/nph.19428] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Accepted: 11/06/2023] [Indexed: 11/25/2023]
Abstract
Our ability to predict temperature responses of leaf respiration in light and darkness (RL and RDk ) is essential to models of global carbon dynamics. While many models rely on constant thermal sensitivity (characterized by Q10 ), uncertainty remains as to whether Q10 of RL and RDk are actually similar. We measured short-term temperature responses of RL and RDk in immature and mature leaves of two evergreen tree species, Castanopsis carlesii and Ormosia henry in an open field. RL was estimated by the Kok method, the Yin method and a newly developed Kok-iterCc method. When estimated by the Yin and Kok-iterCc methods, RL and RDk had similar Q10 (c. 2.5). The Kok method overestimated both Q10 and the light inhibition of respiration. RL /RDk was not affected by leaf temperature. Acclimation of respiration in summer was associated with a decline in basal respiration but not in Q10 in both species, which was related to changes in leaf nitrogen content between seasons. Q10 of RL and RDk in mature leaves were 40% higher than in immature leaves. Our results suggest similar Q10 values can be used to model RL and RDk while leaf development-associated changes in Q10 require special consideration in future respiration models.
Collapse
Affiliation(s)
- Ding Ming Zheng
- Key Laboratory for Subtropical Mountain Ecology of the Ministry of Science and Technology and Fujian Province, College of Geographical Sciences, Fujian Normal University, Fuzhou, 350117, China
| | - Xuming Wang
- Key Laboratory for Subtropical Mountain Ecology of the Ministry of Science and Technology and Fujian Province, College of Geographical Sciences, Fujian Normal University, Fuzhou, 350117, China
- Fujian Sanming Forest Ecosystem National Observation and Research Station, Sanming, 365000, China
- Fujian Provincial Key Laboratory for Plant Eco-Physiology, Fuzhou, 350117, China
| | - Qi Liu
- Key Laboratory for Subtropical Mountain Ecology of the Ministry of Science and Technology and Fujian Province, College of Geographical Sciences, Fujian Normal University, Fuzhou, 350117, China
| | - Yan Ran Sun
- Key Laboratory for Subtropical Mountain Ecology of the Ministry of Science and Technology and Fujian Province, College of Geographical Sciences, Fujian Normal University, Fuzhou, 350117, China
| | - Wei Ting Ma
- Key Laboratory for Subtropical Mountain Ecology of the Ministry of Science and Technology and Fujian Province, College of Geographical Sciences, Fujian Normal University, Fuzhou, 350117, China
| | - Lei Li
- Key Laboratory for Subtropical Mountain Ecology of the Ministry of Science and Technology and Fujian Province, College of Geographical Sciences, Fujian Normal University, Fuzhou, 350117, China
| | - Zhijie Yang
- Key Laboratory for Subtropical Mountain Ecology of the Ministry of Science and Technology and Fujian Province, College of Geographical Sciences, Fujian Normal University, Fuzhou, 350117, China
- Fujian Sanming Forest Ecosystem National Observation and Research Station, Sanming, 365000, China
| | - Guillaume Tcherkez
- Research School of Biology, ANU College of Medicine, Biology and Environment, Australian National University, Canberra, ACT, 0200, Australia
- Institut de Recherche en Horticulture et Semences, INRAe, Université d'Angers, 42 rue Georges Morel, 49070, Beaucouzé, France
| | - Mark A Adams
- Department of Chemistry and Biotechnology, Faculty of Science, Engineering and Technology, Swinburne University of Technology, Melbourne, VIC, 3122, Australia
| | - Yusheng Yang
- Key Laboratory for Subtropical Mountain Ecology of the Ministry of Science and Technology and Fujian Province, College of Geographical Sciences, Fujian Normal University, Fuzhou, 350117, China
- Fujian Sanming Forest Ecosystem National Observation and Research Station, Sanming, 365000, China
| | - Xiao Ying Gong
- Key Laboratory for Subtropical Mountain Ecology of the Ministry of Science and Technology and Fujian Province, College of Geographical Sciences, Fujian Normal University, Fuzhou, 350117, China
- Fujian Sanming Forest Ecosystem National Observation and Research Station, Sanming, 365000, China
- Fujian Provincial Key Laboratory for Plant Eco-Physiology, Fuzhou, 350117, China
| |
Collapse
|
9
|
Schmiege SC, Sharkey TD, Walker B, Hammer J, Way DA. Laisk measurements in the nonsteady state: Tests in plants exposed to warming and variable CO2 concentrations. PLANT PHYSIOLOGY 2023; 193:1045-1057. [PMID: 37232396 PMCID: PMC10517191 DOI: 10.1093/plphys/kiad305] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Revised: 04/28/2023] [Accepted: 04/29/2023] [Indexed: 05/27/2023]
Abstract
Light respiration (RL) is an important component of plant carbon balance and a key parameter in photosynthesis models. RL is often measured using the Laisk method, a gas exchange technique that is traditionally employed under steady-state conditions. However, a nonsteady-state dynamic assimilation technique (DAT) may allow for more rapid Laisk measurements. In 2 studies, we examined the efficacy of DAT for estimating RL and the parameter Ci* (the intercellular CO2 concentration where Rubisco's oxygenation velocity is twice its carboxylation velocity), which is also derived from the Laisk technique. In the first study, we compared DAT and steady-state RL and Ci* estimates in paper birch (Betula papyrifera) growing under control and elevated temperature and CO2 concentrations. In the second, we compared DAT-estimated RL and Ci* in hybrid poplar (Populus nigra L. × P. maximowiczii A. Henry "NM6") exposed to high or low CO2 concentration pre-treatments. The DAT and steady-state methods provided similar RL estimates in B. papyrifera, and we found little acclimation of RL to temperature or CO2; however, Ci* was higher when measured with DAT compared to steady-state methods. These Ci* differences were amplified by the high or low CO2 pre-treatments. We propose that changes in the export of glycine from photorespiration may explain these apparent differences in Ci*.
Collapse
Affiliation(s)
- Stephanie C Schmiege
- Plant Resilience Institute, Michigan State University, East Lansing, MI 48824, USA
- Department of Biology, Western University, London, Ontario N6A 5B7, Canada
| | - Thomas D Sharkey
- Plant Resilience Institute, Michigan State University, East Lansing, MI 48824, USA
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA
| | - Berkley Walker
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
- Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA
| | - Julia Hammer
- Department of Biology, Western University, London, Ontario N6A 5B7, Canada
| | - Danielle A Way
- Department of Biology, Western University, London, Ontario N6A 5B7, Canada
- Research School of Biology, The Australian National University, Acton, Australian Capital Territory 2601, Australia
- Nicholas School of the Environment, Duke University, Durham, NC 27710, USA
- Environmental & Climate Sciences Department, Brookhaven National Laboratory, Upton, NY 11973, USA
| |
Collapse
|
10
|
Ma WT, Yu YZ, Wang X, Gong XY. Estimation of intrinsic water-use efficiency from δ 13C signature of C 3 leaves: Assumptions and uncertainty. FRONTIERS IN PLANT SCIENCE 2023; 13:1037972. [PMID: 36714771 PMCID: PMC9877432 DOI: 10.3389/fpls.2022.1037972] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Accepted: 12/19/2022] [Indexed: 06/18/2023]
Abstract
Carbon isotope composition (δ13C) has been widely used to estimate the intrinsic water-use efficiency (iWUE) of plants in ecosystems around the world, providing an ultimate record of the functional response of plants to climate change. This approach relies on established relationships between leaf gas exchange and isotopic discrimination, which are reflected in different formulations of 13C-based iWUE models. In the current literature, most studies have utilized the simple, linear equation of photosynthetic discrimination to estimate iWUE. However, recent studies demonstrated that using this linear model for quantitative studies of iWUE could be problematic. Despite these advances, there is a scarcity of review papers that have comprehensively reviewed the theoretical basis, assumptions, and uncertainty of 13C-based iWUE models. Here, we 1) present the theoretical basis of 13C-based iWUE models: the classical model (iWUEsim), the comprehensive model (iWUEcom), and the model incorporating mesophyll conductance (iWUEmes); 2) discuss the limitations of the widely used iWUEsim model; 3) and make suggestions on the application of the iWUEmes model. Finally, we suggest that a mechanistic understanding of mesophyll conductance associated effects and post-photosynthetic fractionation are the bottlenecks for improving the 13C-based estimation of iWUE.
Collapse
Affiliation(s)
- Wei Ting Ma
- Key Laboratory for Subtropical Mountain Ecology (Ministry of Science and Technology and Fujian Province Funded), College of Geographical Sciences, Fujian Normal University, Fuzhou, China
| | - Yong Zhi Yu
- Key Laboratory for Subtropical Mountain Ecology (Ministry of Science and Technology and Fujian Province Funded), College of Geographical Sciences, Fujian Normal University, Fuzhou, China
| | - Xuming Wang
- Key Laboratory for Subtropical Mountain Ecology (Ministry of Science and Technology and Fujian Province Funded), College of Geographical Sciences, Fujian Normal University, Fuzhou, China
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, Fujian Normal University, Fuzhou, China
| | - Xiao Ying Gong
- Key Laboratory for Subtropical Mountain Ecology (Ministry of Science and Technology and Fujian Province Funded), College of Geographical Sciences, Fujian Normal University, Fuzhou, China
- Key Laboratory for Humid Subtropical Eco-Geographical Processes of the Ministry of Education, Fujian Normal University, Fuzhou, China
- Fujian Provincial Key Laboratory for Plant Eco-physiology, Fuzhou, China
| |
Collapse
|
11
|
Gong XY, Ma WT, Yu YZ, Fang K, Yang Y, Tcherkez G, Adams MA. Overestimated gains in water-use efficiency by global forests. GLOBAL CHANGE BIOLOGY 2022; 28:4923-4934. [PMID: 35490304 DOI: 10.1111/gcb.16221] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 05/09/2022] [Accepted: 04/20/2022] [Indexed: 06/14/2023]
Abstract
Increases in terrestrial water-use efficiency (WUE) have been reported in many studies, pointing to potential changes in physiological forcing of global carbon and hydrological cycles. However, gains in WUE are of uncertain magnitude over longer (i.e. >10 years) periods of time largely owing to difficulties in accounting for structural and physiological acclimation. 13 C signatures (i.e. δ13 C) of plant organic matter have long been used to estimate WUE at temporal scales ranging from days to centuries. Mesophyll conductance is a key uncertainty in estimated WUE owing to its influence on diffusion of CO2 to sites of carboxylation. Here we apply new knowledge of mesophyll conductance to 464 δ13 C chronologies in tree-rings of 143 species spanning global biomes. Adjusted for mesophyll conductance, gains in WUE during the 20th century (0.15 ppm year-1 ) were considerably smaller than those estimated from conventional modelling (0.26 ppm year-1 ). Across the globe, mean sensitivity of WUE to atmospheric CO2 was 0.15 ppm ppm-1 . Ratios of internal-to-atmospheric CO2 (on a mole fraction basis; ci /ca ) in leaves were mostly constant over time but differed among biomes and plant taxa-highlighting the significance of both plant structure and physiology. Together with synchronized responses in stomatal and mesophyll conductance, our results suggest that ratios of chloroplastic-to-atmospheric CO2 (cc /ca ) are constrained over time. We conclude that forest WUE may have not increased as much as previously suggested and that projections of future climate forcing via CO2 fertilization may need to be adjusted accordingly.
Collapse
Affiliation(s)
- Xiao Ying Gong
- Key Laboratory for Subtropical Mountain Ecology (Ministry of Science and Technology and Fujian Province Funded), College of Geographical Sciences, Fujian Normal University, Fuzhou, China
| | - Wei Ting Ma
- Key Laboratory for Subtropical Mountain Ecology (Ministry of Science and Technology and Fujian Province Funded), College of Geographical Sciences, Fujian Normal University, Fuzhou, China
| | - Yong Zhi Yu
- Key Laboratory for Subtropical Mountain Ecology (Ministry of Science and Technology and Fujian Province Funded), College of Geographical Sciences, Fujian Normal University, Fuzhou, China
| | - Keyan Fang
- Key Laboratory for Subtropical Mountain Ecology (Ministry of Science and Technology and Fujian Province Funded), College of Geographical Sciences, Fujian Normal University, Fuzhou, China
| | - Yusheng Yang
- Key Laboratory for Subtropical Mountain Ecology (Ministry of Science and Technology and Fujian Province Funded), College of Geographical Sciences, Fujian Normal University, Fuzhou, China
| | - Guillaume Tcherkez
- Research School of Biology, ANU College of Medicine, Biology and Environment, Australian National University, Canberra, Australia
- Institut de Recherche en Horticulture et Semences, INRAe, Université d'Angers, Beaucouzé, France
| | - Mark A Adams
- Department of Chemistry and Biotechnology, Faculty of Science, Engineering and Technology, Swinburne University of Technology, Melbourne, Victoria, Australia
| |
Collapse
|
12
|
Reimport of carbon from cytosolic and vacuolar sugar pools into the Calvin-Benson cycle explains photosynthesis labeling anomalies. Proc Natl Acad Sci U S A 2022; 119:e2121531119. [PMID: 35259011 PMCID: PMC8931376 DOI: 10.1073/pnas.2121531119] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
SignificancePhotosynthesis metabolites are quickly labeled when 13CO2 is fed to leaves, but the time course of labeling reveals additional contributing processes involved in the metabolic dynamics of photosynthesis. The existence of three such processes is demonstrated, and a metabolic flux model is developed to explore and characterize them. The model is consistent with a slow return of carbon from cytosolic and vacuolar sugars into the Calvin-Benson cycle through the oxidative pentose phosphate pathway. Our results provide insight into how carbon assimilation is integrated into the metabolic network of photosynthetic cells with implications for global carbon fluxes.
Collapse
|
13
|
Fan Y, Asao S, Furbank RT, von Caemmerer S, Day DA, Tcherkez G, Sage TL, Sage RF, Atkin OK. The crucial roles of mitochondria in supporting C 4 photosynthesis. THE NEW PHYTOLOGIST 2022; 233:1083-1096. [PMID: 34669188 DOI: 10.1111/nph.17818] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Accepted: 10/18/2021] [Indexed: 06/13/2023]
Abstract
C4 photosynthesis involves a series of biochemical and anatomical traits that significantly improve plant productivity under conditions that reduce the efficiency of C3 photosynthesis. We explore how evolution of the three classical biochemical types of C4 photosynthesis (NADP-ME, NAD-ME and PCK types) has affected the functions and properties of mitochondria. Mitochondria in C4 NAD-ME and PCK types play a direct role in decarboxylation of metabolites for C4 photosynthesis. Mitochondria in C4 PCK type also provide ATP for C4 metabolism, although this role for ATP provision is not seen in NAD-ME type. Such involvement has increased mitochondrial abundance/size and associated enzymatic capacity, led to changes in mitochondrial location and ultrastructure, and altered the role of mitochondria in cellular carbon metabolism in the NAD-ME and PCK types. By contrast, these changes in mitochondrial properties are absent in the C4 NADP-ME type and C3 leaves, where mitochondria play no direct role in photosynthesis. From an eco-physiological perspective, rates of leaf respiration in darkness vary considerably among C4 species but does not differ systematically among the three C4 types. This review outlines further mitochondrial research in key areas central to the engineering of the C4 pathway into C3 plants and to the understanding of variation in rates of C4 dark respiration.
Collapse
Affiliation(s)
- Yuzhen Fan
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
- Division of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - Shinichi Asao
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - Robert T Furbank
- Division of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
- ARC Centre of Excellence for Translational Photosynthesis, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - Susanne von Caemmerer
- Division of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
- ARC Centre of Excellence for Translational Photosynthesis, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| | - David A Day
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, SA, 5001, Australia
| | - Guillaume Tcherkez
- Division of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
- Institut de Recherche en Horticulture et Semences, INRA and University of Angers, Beaucouzé, 49070, France
| | - Tammy L Sage
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, ON, M5S 3B2, Canada
| | - Rowan F Sage
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, ON, M5S 3B2, Canada
| | - Owen K Atkin
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
- Division of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia
| |
Collapse
|
14
|
Tcherkez G, Atkin OK. Unravelling mechanisms and impacts of day respiration in plant leaves: an introduction to a Virtual Issue. THE NEW PHYTOLOGIST 2021; 230:5-10. [PMID: 33650185 DOI: 10.1111/nph.17164] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Accepted: 12/23/2020] [Indexed: 06/12/2023]
Affiliation(s)
- Guillaume Tcherkez
- Division of Plant Sciences, Research School of Biology, ANU College of Science, Australian National University, Canberra, ACT, 2601, Australia
| | - Owen K Atkin
- Division of Plant Sciences, Research School of Biology, ANU College of Science, Australian National University, Canberra, ACT, 2601, Australia
| |
Collapse
|
15
|
Ma WT, Tcherkez G, Wang XM, Schäufele R, Schnyder H, Yang Y, Gong XY. Accounting for mesophyll conductance substantially improves 13 C-based estimates of intrinsic water-use efficiency. THE NEW PHYTOLOGIST 2021; 229:1326-1338. [PMID: 32984961 DOI: 10.1111/nph.16958] [Citation(s) in RCA: 43] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Accepted: 09/14/2020] [Indexed: 05/08/2023]
Abstract
Carbon isotope discrimination (Δ) has been used widely to infer intrinsic water-use efficiency (iWUE) of C3 plants, a key parameter linking carbon and water fluxes. Despite the essential role of mesophyll conductance (gm ) in photosynthesis and Δ, its effect on Δ-based predictions of iWUE has generally been neglected. Here, we derive a mathematical expression of iWUE as a function of Δ that includes gm (iWUEmes ) and exploits the gm -stomatal conductance (gsc ) relationship across drought-stress levels and plant functional groups (deciduous or semideciduous woody, evergreen woody and herbaceous species) in a global database. iWUEmes was further validated with an independent dataset of online-Δ and CO2 and H2 O gas exchange measurements with seven species. Drought stress reduced gsc and gm by nearly one-half across all plant functional groups, but had no significant effect on the gsc : gm ratio, with a well supported value of 0.79 ± 0.07 (95% CI, n = 198). gm was negatively correlated to iWUE. Incorporating the gsc : gm ratio greatly improved estimates of iWUE, compared with calculations that assumed infinite gm . The inclusion of the gsc : gm ratio, fixed at 0.79 when gm was unknown, proved desirable to eliminate significant errors in estimating iWUE from Δ across various C3 vegetation types.
Collapse
Affiliation(s)
- Wei Ting Ma
- Key Laboratory for Subtropical Mountain Ecology (Ministry of Science and Technology and Fujian Province Funded), College of Geographical Sciences, Fujian Normal University, Fuzhou, 350007, China
| | - Guillaume Tcherkez
- Research School of Biology, ANU College of Medicine, Biology and Environment, Australian National University, Canberra, ACT 0200, Australia
- Institut de Recherche en Horticulture et Semences, INRAe, Université d'Angers, 42 rue Georges Morel, Beaucouzé, 49070, France
| | - Xu Ming Wang
- Key Laboratory for Subtropical Mountain Ecology (Ministry of Science and Technology and Fujian Province Funded), College of Geographical Sciences, Fujian Normal University, Fuzhou, 350007, China
| | - Rudi Schäufele
- Lehrstuhl für Grünlandlehre, Technische Universität München, Alte Akademie 12, Freising, 85354, Germany
| | - Hans Schnyder
- Lehrstuhl für Grünlandlehre, Technische Universität München, Alte Akademie 12, Freising, 85354, Germany
| | - Yusheng Yang
- Key Laboratory for Subtropical Mountain Ecology (Ministry of Science and Technology and Fujian Province Funded), College of Geographical Sciences, Fujian Normal University, Fuzhou, 350007, China
| | - Xiao Ying Gong
- Key Laboratory for Subtropical Mountain Ecology (Ministry of Science and Technology and Fujian Province Funded), College of Geographical Sciences, Fujian Normal University, Fuzhou, 350007, China
| |
Collapse
|
16
|
Gauthier PPG, Saenz N, Griffin KL, Way D, Tcherkez G. Is the Kok effect a respiratory phenomenon? Metabolic insight using 13 C labeling in Helianthus annuus leaves. THE NEW PHYTOLOGIST 2020; 228:1243-1255. [PMID: 32564374 DOI: 10.1111/nph.16756] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2020] [Accepted: 06/11/2020] [Indexed: 06/11/2023]
Abstract
The Kok effect is a well-known phenomenon in which the quantum yield of photosynthesis changes abruptly at low light. This effect has often been interpreted as a shift in leaf respiratory metabolism and thus used widely to measure day respiration. However, there is still no formal evidence that the Kok effect has a respiratory origin. Here, both gas exchange and isotopic labeling were carried out on sunflower leaves, using glucose that was 13 C-enriched at specific C-atom positions. Position-specific decarboxylation measurements and NMR analysis of metabolites were used to trace the fate of C-atoms in metabolism. Decarboxylation rates were significant at low light (including above the Kok break point) and increased with decreasing irradiance below 100 µmol photons m-2 s-1 . The variation in several metabolite pools such as malate, fumarate or citrate, and flux calculations suggest the involvement of several decarboxylating pathways in the Kok effect, including the malic enzyme. Our results show that day respiratory CO2 evolution plays an important role in the Kok effect. However, the increase in the apparent quantum yield of photosynthesis below the Kok break point is also probably related to malate metabolism, which participates in maintaining photosynthetic linear electron flow.
Collapse
Affiliation(s)
- Paul P G Gauthier
- Department of Geosciences, Princeton University, Princeton, NJ, 08544, USA
| | - Natalie Saenz
- Department of Chemistry, Columbia University, 3000 Broadway NYC, New York, NY, 10025, USA
| | - Kevin L Griffin
- Department of Ecology, Evolution and Environmental Biology (E3B), Columbia University, 1200 Amsterdam Avenue, New York, NY, 10027, USA
- Department of Earth and Environmental Sciences, Lamont Doherty Earth Observatory, Columbia University, 61 Route 9W, Palisades, NY, 10964, USA
| | - Danielle Way
- Department of Biology, University of Western Ontario, 1151 Richmond Street, London, ON, N6A 5B7, Canada
- Environmental and Climate Sciences Department, Brookhaven National Laboratory, Upton, NY, 11973, USA
- Nicholas School of the Environment, Duke University, Durham, NC, 27710, USA
| | - Guillaume Tcherkez
- Research School of Biology, Joint College of Sciences, Australian National University, Canberra, ACT, 2601, Australia
- Seedling Metabolism and Stress, Institut de Recherche en Horticulture et Semences, INRAE Angers, Université d'Angers, 42 rue Georges Morel, Beaucouzé Cedex, 49780, France
| |
Collapse
|
17
|
Yin X, Niu Y, van der Putten PEL, Struik PC. The Kok effect revisited. THE NEW PHYTOLOGIST 2020; 227:1764-1775. [PMID: 32369617 PMCID: PMC7497127 DOI: 10.1111/nph.16638] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2020] [Accepted: 04/24/2020] [Indexed: 05/18/2023]
Abstract
The Kok effect refers to the abrupt decrease around the light compensation point in the slope of net photosynthetic rate vs irradiance. Arguably, this switch arises from light inhibition of respiration, allowing the Kok method to estimate day respiration (Rd ). Recent analysis suggests that increasing proportions of photorespiration (quantified as Γ*/Cc , the ratio of CO2 compensation point Γ* to chloroplast CO2 concentration, Cc ) with irradiance explain much of the Kok effect. Also, the Kok method has been modified to account for the decrease in PSII photochemical efficiency (Φ2 ) with irradiance. Using a model that illustrates how varying Rd , Γ*/Cc , Φ2 and proportions of alternative electron transport could engender the Kok effect, we quantified the contribution of these parameters to the Kok effect measured in sunflower across various O2 and CO2 concentrations and various temperatures. Overall, the decreasing Φ2 with irradiance explained c. 12%, and the varying Γ*/Cc explained c. 25%, of the Kok effect. Maximum real light inhibition of Rd was much lower than the inhibition derived from the Kok method, but still increased with photorespiration. Photorespiration had a dual contribution to the Kok effect, one via the varying Γ*/Cc and the other via its participation in light inhibition of Rd .
Collapse
Affiliation(s)
- Xinyou Yin
- Centre for Crop Systems AnalysisDepartment of Plant SciencesWageningen University & ResearchPO Box 430Wageningen6700 AKthe Netherlands
| | - Yuxi Niu
- Centre for Crop Systems AnalysisDepartment of Plant SciencesWageningen University & ResearchPO Box 430Wageningen6700 AKthe Netherlands
| | - Peter E. L. van der Putten
- Centre for Crop Systems AnalysisDepartment of Plant SciencesWageningen University & ResearchPO Box 430Wageningen6700 AKthe Netherlands
| | - Paul C. Struik
- Centre for Crop Systems AnalysisDepartment of Plant SciencesWageningen University & ResearchPO Box 430Wageningen6700 AKthe Netherlands
| |
Collapse
|
18
|
Busch FA, Holloway-Phillips M, Stuart-Williams H, Farquhar GD. Revisiting carbon isotope discrimination in C 3 plants shows respiration rules when photosynthesis is low. NATURE PLANTS 2020; 6:245-258. [PMID: 32170287 DOI: 10.1038/s41477-020-0606-6] [Citation(s) in RCA: 50] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2019] [Accepted: 01/23/2020] [Indexed: 05/12/2023]
Abstract
Stable isotopes are commonly used to study the diffusion of CO2 within photosynthetic plant tissues. The standard method used to interpret the observed preference for the lighter carbon isotope in C3 photosynthesis involves the model of Farquhar et al., which relates carbon isotope discrimination to physical and biochemical processes within the leaf. However, under many conditions the model returns unreasonable results for mesophyll conductance to CO2 diffusion (gm), especially when rates of photosynthesis are low. Here, we re-derive the carbon isotope discrimination model using modified assumptions related to the isotope effect of mitochondrial respiration. In particular, we treat the carbon pool associated with respiration as separate from the pool of primary assimilates. We experimentally test the model by comparing gm values measured with different CO2 source gases varying in their isotopic composition, and show that our new model returns matching gm values that are much more reasonable than those obtained with the previous model. We use our results to discuss CO2 diffusion properties within the mesophyll.
Collapse
Affiliation(s)
- Florian A Busch
- Research School of Biology and ARC Centre of Excellence for Translational Photosynthesis, Australian National University, Acton, Australian Capital Territory, Australia.
| | - Meisha Holloway-Phillips
- Research School of Biology and ARC Centre of Excellence for Translational Photosynthesis, Australian National University, Acton, Australian Capital Territory, Australia
- Department of Environmental Sciences, University of Basel, Basel, Switzerland
| | - Hilary Stuart-Williams
- Research School of Biology and ARC Centre of Excellence for Translational Photosynthesis, Australian National University, Acton, Australian Capital Territory, Australia
| | - Graham D Farquhar
- Research School of Biology and ARC Centre of Excellence for Translational Photosynthesis, Australian National University, Acton, Australian Capital Territory, Australia
| |
Collapse
|
19
|
Berghuijs HNC, Yin X, Ho QT, Retta MA, Nicolaï BM, Struik PC. Using a reaction-diffusion model to estimate day respiration and reassimilation of (photo)respired CO 2 in leaves. THE NEW PHYTOLOGIST 2019; 223:619-631. [PMID: 31002400 PMCID: PMC6618012 DOI: 10.1111/nph.15857] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2018] [Accepted: 04/05/2019] [Indexed: 05/29/2023]
Abstract
Methods using gas exchange measurements to estimate respiration in the light (day respiration R d ) make implicit assumptions about reassimilation of (photo)respired CO2 ; however, this reassimilation depends on the positions of mitochondria. We used a reaction-diffusion model without making these assumptions to analyse datasets on gas exchange, chlorophyll fluorescence and anatomy for tomato leaves. We investigated how R d values obtained by the Kok and the Yin methods are affected by these assumptions and how those by the Laisk method are affected by the positions of mitochondria. The Kok method always underestimated R d . Estimates of R d by the Yin method and by the reaction-diffusion model agreed only for nonphotorespiratory conditions. Both the Yin and Kok methods ignore reassimilation of (photo)respired CO2 , and thus underestimated R d for photorespiratory conditions, but this was less so in the Yin than in the Kok method. Estimates by the Laisk method were affected by assumed positions of mitochondria. It did not work if mitochondria were in the cytosol between the plasmamembrane and the chloroplast envelope. However, mitochondria were found to be most likely between the tonoplast and chloroplasts. Our reaction-diffusion model effectively estimates R d , enlightens the dependence of R d estimates on reassimilation and clarifies (dis)advantages of existing methods.
Collapse
Affiliation(s)
- Herman N. C. Berghuijs
- Centre for Crop Systems AnalysisWageningen University & ResearchDroevendaalsesteeg 16708 PBWageningenthe Netherlands
- Flanders Center of Postharvest Technology/BIOSYST‐MeBioSKatholieke Universiteit LeuvenWillem de Croylaan 42LeuvenB‐3001Belgium
- Department of Crop Production EcologySwedish University of Agricultural SciencesUlls väg 16Uppsala75651Sweden
| | - Xinyou Yin
- Centre for Crop Systems AnalysisWageningen University & ResearchDroevendaalsesteeg 16708 PBWageningenthe Netherlands
| | - Q. Tri Ho
- Flanders Center of Postharvest Technology/BIOSYST‐MeBioSKatholieke Universiteit LeuvenWillem de Croylaan 42LeuvenB‐3001Belgium
- Food Chemistry & Technology DepartmentTeagasc Food Research CentreMoorepark, Fermoy, Co.CorkP61 C996Ireland
| | - Moges A. Retta
- Centre for Crop Systems AnalysisWageningen University & ResearchDroevendaalsesteeg 16708 PBWageningenthe Netherlands
- Flanders Center of Postharvest Technology/BIOSYST‐MeBioSKatholieke Universiteit LeuvenWillem de Croylaan 42LeuvenB‐3001Belgium
| | - Bart M. Nicolaï
- Flanders Center of Postharvest Technology/BIOSYST‐MeBioSKatholieke Universiteit LeuvenWillem de Croylaan 42LeuvenB‐3001Belgium
| | - Paul C. Struik
- Centre for Crop Systems AnalysisWageningen University & ResearchDroevendaalsesteeg 16708 PBWageningenthe Netherlands
| |
Collapse
|
20
|
Sharkey TD. Discovery of the canonical Calvin-Benson cycle. PHOTOSYNTHESIS RESEARCH 2019; 140:235-252. [PMID: 30374727 DOI: 10.1007/s11120-018-0600-2] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2018] [Accepted: 10/18/2018] [Indexed: 05/12/2023]
Abstract
It has been 65 years since the Calvin-Benson cycle was first formulated. In this paper, the development of the concepts that are critical to the cycle is traced and the contributions of Calvin, Benson, and Bassham are discussed. Some simplified views often found in text books such as ascending paper chromatography and the use of the "lollipop" for short labeling are discussed and further details given. Key discoveries that underpinned elucidation of the cycle such as the importance of sedoheptulose phosphate and ribulose 1,5-bisphosphate are described. The interchange of ideas between other researchers working on what is now called the pentose phosphate pathway and the development of the ideas of Calvin and Benson are explored while the gluconeogenic aspects of the cycle are emphasized. Concerns raised about anomalies of label distribution in glucose are considered. Other carbon metabolism pathways associated with the Calvin-Benson cycle are also described. Finally, there is a section describing the rift between Calvin and Benson.
Collapse
Affiliation(s)
- Thomas D Sharkey
- MSU DOE Plant Research Laboratory, Plant Resilience Institute, Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.
| |
Collapse
|
21
|
Way DA, Aspinwall MJ, Drake JE, Crous KY, Campany CE, Ghannoum O, Tissue DT, Tjoelker MG. Responses of respiration in the light to warming in field-grown trees: a comparison of the thermal sensitivity of the Kok and Laisk methods. THE NEW PHYTOLOGIST 2019; 222:132-143. [PMID: 30372524 DOI: 10.1111/nph.15566] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2018] [Accepted: 10/21/2018] [Indexed: 06/08/2023]
Abstract
The Kok and Laisk techniques can both be used to estimate light respiration Rlight . We investigated whether responses of Rlight to short- and long-term changes in leaf temperature depend on the technique used to estimate Rlight . We grew Eucalyptus tereticornis in whole-tree chambers under ambient temperature (AT) or AT + 3°C (elevated temperature, ET). We assessed dark respiration Rdark and light respiration with the Kok (RKok ) and Laisk (RLaisk ) methods at four temperatures to determine the degree of light suppression of respiration using both methods in AT and ET trees. The ET treatment had little impact on Rdark , RKok or RLaisk . Although the thermal sensitivities of RKok or RLaisk were similar, RKok was higher than RLaisk . We found negative values of RLaisk at the lowest measurement temperatures, indicating positive net CO2 uptake, which we propose may be related to phosphoenolpyruvate carboxylase activity. Light suppression of Rdark decreased with increasing leaf temperature, but the degree of suppression depended on the method used. The Kok and Laisk methods do not generate the same estimates of Rlight or light suppression of Rdark between 20 and 35°C. Negative rates of RLaisk imply that this method may become less reliable at low temperatures.
Collapse
Affiliation(s)
- Danielle A Way
- Department of Biology, University of Western Ontario, 1151 Richmond Street, London, ON N6A 5B7, Canada
- Nicholas School for the Environment, Duke University, 9 Circuit Drive, Box 90328, Durham, NC, 27708, USA
| | - Michael J Aspinwall
- Hawkesbury Institute of the Environment, Western Sydney University, Locked bag 1797, Penrith, NSW, 2751, Australia
- Department of Biology, University of North Florida, 1 UNF Drive, Jacksonville, FL, 32224, USA
| | - John E Drake
- Hawkesbury Institute of the Environment, Western Sydney University, Locked bag 1797, Penrith, NSW, 2751, Australia
- Forest and Natural Resources Management, SUNY-ESF, 1 Forestry Drive, Syracuse, NY, 13210, USA
| | - Kristine Y Crous
- Hawkesbury Institute of the Environment, Western Sydney University, Locked bag 1797, Penrith, NSW, 2751, Australia
| | - Courtney E Campany
- Hawkesbury Institute of the Environment, Western Sydney University, Locked bag 1797, Penrith, NSW, 2751, Australia
- Department of Biology, Colgate University, 13 Oak Drive, Hamilton, NY, 13346, USA
| | - Oula Ghannoum
- Hawkesbury Institute of the Environment, Western Sydney University, Locked bag 1797, Penrith, NSW, 2751, Australia
| | - David T Tissue
- Hawkesbury Institute of the Environment, Western Sydney University, Locked bag 1797, Penrith, NSW, 2751, Australia
| | - Mark G Tjoelker
- Hawkesbury Institute of the Environment, Western Sydney University, Locked bag 1797, Penrith, NSW, 2751, Australia
| |
Collapse
|
22
|
Heskel MA, Tang J. Environmental controls on light inhibition of respiration and leaf and canopy daytime carbon exchange in a temperate deciduous forest. TREE PHYSIOLOGY 2018; 38:1886-1902. [PMID: 30252110 DOI: 10.1093/treephys/tpy103] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2018] [Accepted: 08/21/2018] [Indexed: 06/08/2023]
Abstract
Uncertainty in the estimation of daytime ecosystem carbon cycling due to the light inhibition of leaf respiration and photorespiration, and how these small fluxes vary through the growing season in the field, remains a confounding element in calculations of gross primary productivity and ecosystem respiration. Our study focuses on how phenology, short-term temperature changes and canopy position influence leaf-level carbon exchange in Quercus rubra L. (red oak) at Harvard Forest in central Massachusetts, USA. Using leaf measurements and eddy covariance, we also quantify the effect of light inhibition on estimates of daytime respiration at leaf and ecosystem scales. Measured rates of leaf respiration in the light and dark were highest in the early growing season and declined in response to 10-day prior air temperatures (P < 0.01), evidence of within-season thermal acclimation. Leaf respiration was significantly inhibited by light (27.1 ± 2.82% inhibited across all measurements), and this inhibition varied with the month of measurement; greater inhibition was observed in mid-summer leaves compared with early- and late-season leaves. Increases in measurement temperature led to higher rates of respiration and photorespiration, though with a less pronounced positive effect on photosynthesis; as a result, carbon-use efficiency declined with increasing leaf temperature. Over the growing season when we account for seasonally variable light inhibition and basal respiration rates, our modeling approaches found a cumulative 12.9% reduction of leaf-level respiration and a 12.8% reduction of canopy leaf respiration, resulting in a 3.7% decrease in total ecosystem respiration compared with estimates that do not account for light inhibition in leaves. Our study sheds light on the environmental controls of the light inhibition of daytime leaf respiration and how integrating this phenomenon and other small fluxes can reduce uncertainty in current and future projections of terrestrial carbon cycling.
Collapse
Affiliation(s)
- Mary A Heskel
- The Ecosystems Center, Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA, USA
- Department of Biology, Macalester College, 1600 Grand Avenue, Saint Paul, MN, USA
| | - Jianwu Tang
- The Ecosystems Center, Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA, USA
| |
Collapse
|