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For: Gordenin DA, Lobachev KS, Degtyareva NP, Malkova AL, Perkins E, Resnick MA. Inverted DNA repeats: a source of eukaryotic genomic instability. Mol Cell Biol 1993;13:5315-22. [PMID: 8395002 DOI: 10.1128/mcb.13.9.5315-5322.1993] [Citation(s) in RCA: 95] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
Number Cited by Other Article(s)
1
Guseva S, Szekely O, Geng A, Smith K, Pratihar S, Lee Y, Li L, Korn SM, Gu S, Al-Hashimi HM. An A-T Hoogsteen Base Pair in a Naked DNA Hairpin Motif: A Protein-Recognized Conformation. Angew Chem Int Ed Engl 2025:e202425067. [PMID: 40215227 DOI: 10.1002/anie.202425067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2024] [Revised: 03/31/2025] [Accepted: 04/08/2025] [Indexed: 04/25/2025]
2
Guseva S, Szekely O, Geng A, Smith K, Pratihar S, Gu S, Al-Hashimi HM. An A-T Hoogsteen base pair in a naked DNA hairpin motif: A Protein-Recognized Conformation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.12.22.630000. [PMID: 39763874 PMCID: PMC11703281 DOI: 10.1101/2024.12.22.630000] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/25/2025]
3
Yu Y, Wang X, Fox J, Li Q, Yu Y, Hastings PJ, Chen K, Ira G. RPA and Rad27 limit templated and inverted insertions at DNA breaks. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.03.07.583931. [PMID: 38496432 PMCID: PMC10942419 DOI: 10.1101/2024.03.07.583931] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/19/2024]
4
Verma A, Lin M, Smith D, Walker JC, Hewezi T, Davis EL, Hussey RS, Baum TJ, Mitchum MG. A novel sugar beet cyst nematode effector 2D01 targets the Arabidopsis HAESA receptor-like kinase. MOLECULAR PLANT PATHOLOGY 2022;23:1765-1782. [PMID: 36069343 PMCID: PMC9644282 DOI: 10.1111/mpp.13263] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Revised: 08/10/2022] [Accepted: 08/11/2022] [Indexed: 06/15/2023]
5
Fajkus P, Peška V, Fajkus J, Sýkorová E. Origin and Fates of TERT Gene Copies in Polyploid Plants. Int J Mol Sci 2021;22:1783. [PMID: 33670111 PMCID: PMC7916837 DOI: 10.3390/ijms22041783] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Revised: 02/03/2021] [Accepted: 02/05/2021] [Indexed: 12/14/2022]  Open
6
Fonseca PLC, Badotti F, De-Paula RB, Araújo DS, Bortolini DE, Del-Bem LE, Azevedo VA, Brenig B, Aguiar ERGR, Góes-Neto A. Exploring the Relationship Among Divergence Time and Coding and Non-coding Elements in the Shaping of Fungal Mitochondrial Genomes. Front Microbiol 2020;11:765. [PMID: 32411111 PMCID: PMC7202290 DOI: 10.3389/fmicb.2020.00765] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Accepted: 03/30/2020] [Indexed: 12/24/2022]  Open
7
Structural variation and its potential impact on genome instability: Novel discoveries in the EGFR landscape by long-read sequencing. PLoS One 2020;15:e0226340. [PMID: 31940362 PMCID: PMC6961855 DOI: 10.1371/journal.pone.0226340] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2019] [Accepted: 11/25/2019] [Indexed: 12/29/2022]  Open
8
Shi J, Liang C. Generic Repeat Finder: A High-Sensitivity Tool for Genome-Wide De Novo Repeat Detection. PLANT PHYSIOLOGY 2019;180:1803-1815. [PMID: 31152127 PMCID: PMC6670090 DOI: 10.1104/pp.19.00386] [Citation(s) in RCA: 61] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2019] [Accepted: 05/17/2019] [Indexed: 05/25/2023]
9
Natale F, Scholl A, Rapp A, Yu W, Rausch C, Cardoso MC. DNA replication and repair kinetics of Alu, LINE-1 and satellite III genomic repetitive elements. Epigenetics Chromatin 2018;11:61. [PMID: 30352618 PMCID: PMC6198450 DOI: 10.1186/s13072-018-0226-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2018] [Accepted: 09/25/2018] [Indexed: 12/04/2022]  Open
10
Raza MA, Yu N, Wang D, Cao L, Gan S, Chen L. Differential DNA methylation and gene expression in reciprocal hybrids between Solanum lycopersicum and S. pimpinellifolium. DNA Res 2018;24:597-607. [PMID: 28679169 PMCID: PMC5726463 DOI: 10.1093/dnares/dsx028] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2017] [Accepted: 05/27/2017] [Indexed: 12/22/2022]  Open
11
Complex Analyses of Short Inverted Repeats in All Sequenced Chloroplast DNAs. BIOMED RESEARCH INTERNATIONAL 2018;2018:1097018. [PMID: 30140690 PMCID: PMC6081594 DOI: 10.1155/2018/1097018] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/15/2018] [Revised: 06/19/2018] [Accepted: 07/12/2018] [Indexed: 01/14/2023]
12
Lavi B, Levy Karin E, Pupko T, Hazkani-Covo E. The Prevalence and Evolutionary Conservation of Inverted Repeats in Proteobacteria. Genome Biol Evol 2018;10:918-927. [PMID: 29608719 PMCID: PMC5941160 DOI: 10.1093/gbe/evy044] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/21/2018] [Indexed: 12/11/2022]  Open
13
Näsvall J. Direct and Inverted Repeat stimulated excision (DIRex): Simple, single-step, and scar-free mutagenesis of bacterial genes. PLoS One 2017;12:e0184126. [PMID: 28854250 PMCID: PMC5576700 DOI: 10.1371/journal.pone.0184126] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2017] [Accepted: 08/18/2017] [Indexed: 11/29/2022]  Open
14
Putman AI, Tredway LP, Carbone I. Characterization and distribution of mating-type genes of the turfgrass pathogen Sclerotinia homoeocarpa on a global scale. Fungal Genet Biol 2015;81:25-40. [PMID: 26049125 DOI: 10.1016/j.fgb.2015.05.012] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2014] [Revised: 05/27/2015] [Accepted: 05/28/2015] [Indexed: 01/23/2023]
15
Lu S, Wang G, Bacolla A, Zhao J, Spitser S, Vasquez KM. Short Inverted Repeats Are Hotspots for Genetic Instability: Relevance to Cancer Genomes. Cell Rep 2015;10:1674-1680. [PMID: 25772355 DOI: 10.1016/j.celrep.2015.02.039] [Citation(s) in RCA: 88] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2014] [Revised: 01/26/2015] [Accepted: 02/16/2015] [Indexed: 12/25/2022]  Open
16
Aygun N. Correlations between long inverted repeat (LIR) features, deletion size and distance from breakpoint in human gross gene deletions. Sci Rep 2015;5:8300. [PMID: 25657065 PMCID: PMC4319165 DOI: 10.1038/srep08300] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2014] [Accepted: 01/14/2015] [Indexed: 11/09/2022]  Open
17
Aguileta G, de Vienne DM, Ross ON, Hood ME, Giraud T, Petit E, Gabaldón T. High variability of mitochondrial gene order among fungi. Genome Biol Evol 2015;6:451-65. [PMID: 24504088 PMCID: PMC3942027 DOI: 10.1093/gbe/evu028] [Citation(s) in RCA: 162] [Impact Index Per Article: 16.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
18
Adeno-associated virus inverted terminal repeats stimulate gene editing. Gene Ther 2014;22:190-5. [PMID: 25503695 DOI: 10.1038/gt.2014.109] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2014] [Revised: 10/09/2014] [Accepted: 11/03/2014] [Indexed: 12/13/2022]
19
Ye C, Ji G, Li L, Liang C. detectIR: a novel program for detecting perfect and imperfect inverted repeats using complex numbers and vector calculation. PLoS One 2014;9:e113349. [PMID: 25409465 PMCID: PMC4237412 DOI: 10.1371/journal.pone.0113349] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2014] [Accepted: 10/22/2014] [Indexed: 11/19/2022]  Open
20
Palindromic GOLGA8 core duplicons promote chromosome 15q13.3 microdeletion and evolutionary instability. Nat Genet 2014;46:1293-302. [PMID: 25326701 PMCID: PMC4244265 DOI: 10.1038/ng.3120] [Citation(s) in RCA: 72] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2014] [Accepted: 09/25/2014] [Indexed: 12/14/2022]
21
Mehrotra S, Goyal V. Repetitive sequences in plant nuclear DNA: types, distribution, evolution and function. GENOMICS, PROTEOMICS & BIOINFORMATICS 2014;12:164-71. [PMID: 25132181 PMCID: PMC4411372 DOI: 10.1016/j.gpb.2014.07.003] [Citation(s) in RCA: 156] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/12/2014] [Revised: 06/29/2014] [Accepted: 07/03/2014] [Indexed: 12/27/2022]
22
Lee JR, Hong CP, Moon JW, Jung YD, Kim DS, Kim TH, Gim JA, Bae JH, Choi Y, Eo J, Kwon YJ, Song S, Ko J, Yang YM, Lee HK, Park KD, Ahn K, Do KT, Ha HS, Han K, Yi JM, Cha HJ, Cho BW, Bhak J, Kim HS. Genome-wide analysis of DNA methylation patterns in horse. BMC Genomics 2014;15:598. [PMID: 25027854 PMCID: PMC4117963 DOI: 10.1186/1471-2164-15-598] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2013] [Accepted: 07/07/2014] [Indexed: 12/23/2022]  Open
23
Kato T, Franconi CP, Sheridan MB, Hacker AM, Inagakai H, Glover TW, Arlt MF, Drabkin HA, Gemmill RM, Kurahashi H, Emanuel BS. Analysis of the t(3;8) of hereditary renal cell carcinoma: a palindrome-mediated translocation. Cancer Genet 2014;207:133-40. [PMID: 24813807 DOI: 10.1016/j.cancergen.2014.03.004] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2013] [Revised: 02/07/2014] [Accepted: 03/10/2014] [Indexed: 12/01/2022]
24
Zhang Y, Saini N, Sheng Z, Lobachev KS. Genome-wide screen reveals replication pathway for quasi-palindrome fragility dependent on homologous recombination. PLoS Genet 2013;9:e1003979. [PMID: 24339793 PMCID: PMC3855049 DOI: 10.1371/journal.pgen.1003979] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2013] [Accepted: 10/12/2013] [Indexed: 02/07/2023]  Open
25
Senda M, Nishimura S, Kasai A, Yumoto S, Takada Y, Tanaka Y, Ohnishi S, Kuroda T. Comparative analysis of the inverted repeat of a chalcone synthase pseudogene between yellow soybean and seed coat pigmented mutants. BREEDING SCIENCE 2013;63:384-92. [PMID: 24399910 PMCID: PMC3859349 DOI: 10.1270/jsbbs.63.384] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2013] [Accepted: 08/17/2013] [Indexed: 05/13/2023]
26
Lim C, Luhe AL, JingYing CT, Balagurunathan B, Wu J, Zhao H. Size of gene specific inverted repeat--dependent gene deletion In Saccharomyces cerevisiae. PLoS One 2013;8:e72137. [PMID: 23977230 PMCID: PMC3748122 DOI: 10.1371/journal.pone.0072137] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2013] [Accepted: 07/08/2013] [Indexed: 01/15/2023]  Open
27
St. Charles J, Petes TD. High-resolution mapping of spontaneous mitotic recombination hotspots on the 1.1 Mb arm of yeast chromosome IV. PLoS Genet 2013;9:e1003434. [PMID: 23593029 PMCID: PMC3616911 DOI: 10.1371/journal.pgen.1003434] [Citation(s) in RCA: 69] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2012] [Accepted: 02/20/2013] [Indexed: 11/18/2022]  Open
28
Chen X, Shen Y, Zhang F, Chiang C, Pillalamarri V, Blumenthal I, Talkowski M, Wu BL, Gusella J. Molecular analysis of a deletion hotspot in the NRXN1 region reveals the involvement of short inverted repeats in deletion CNVs. Am J Hum Genet 2013;92:375-86. [PMID: 23472757 PMCID: PMC3591860 DOI: 10.1016/j.ajhg.2013.02.006] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2012] [Revised: 12/04/2012] [Accepted: 02/12/2013] [Indexed: 01/07/2023]  Open
29
Vasquez KM, Wang G. The yin and yang of repair mechanisms in DNA structure-induced genetic instability. Mutat Res 2013;743-744:118-131. [PMID: 23219604 PMCID: PMC3661696 DOI: 10.1016/j.mrfmmm.2012.11.005] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2012] [Revised: 11/21/2012] [Accepted: 11/24/2012] [Indexed: 01/14/2023]
30
Wojcik EA, Brzostek A, Bacolla A, Mackiewicz P, Vasquez KM, Korycka-Machala M, Jaworski A, Dziadek J. Direct and inverted repeats elicit genetic instability by both exploiting and eluding DNA double-strand break repair systems in mycobacteria. PLoS One 2012;7:e51064. [PMID: 23251422 PMCID: PMC3519483 DOI: 10.1371/journal.pone.0051064] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2012] [Accepted: 10/29/2012] [Indexed: 12/02/2022]  Open
31
Tschudi C, Shi H, Franklin JB, Ullu E. Small interfering RNA-producing loci in the ancient parasitic eukaryote Trypanosoma brucei. BMC Genomics 2012;13:427. [PMID: 22925482 PMCID: PMC3447711 DOI: 10.1186/1471-2164-13-427] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2012] [Accepted: 08/24/2012] [Indexed: 01/24/2023]  Open
32
Kato T, Kurahashi H, Emanuel BS. Chromosomal translocations and palindromic AT-rich repeats. Curr Opin Genet Dev 2012;22:221-8. [PMID: 22402448 DOI: 10.1016/j.gde.2012.02.004] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2011] [Revised: 02/03/2012] [Accepted: 02/06/2012] [Indexed: 10/28/2022]
33
Sati S, Tanwar VS, Kumar KA, Patowary A, Jain V, Ghosh S, Ahmad S, Singh M, Reddy SU, Chandak GR, Raghunath M, Sivasubbu S, Chakraborty K, Scaria V, Sengupta S. High resolution methylome map of rat indicates role of intragenic DNA methylation in identification of coding region. PLoS One 2012;7:e31621. [PMID: 22355382 PMCID: PMC3280313 DOI: 10.1371/journal.pone.0031621] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2011] [Accepted: 01/10/2012] [Indexed: 11/18/2022]  Open
34
Zhu J, Nguyen MT, Nakamura E, Yang J, Mackem S. Cre-mediated recombination can induce apoptosis in vivo by activating the p53 DNA damage-induced pathway. Genesis 2012;50:102-11. [PMID: 21913308 PMCID: PMC3273649 DOI: 10.1002/dvg.20799] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2010] [Revised: 08/30/2011] [Accepted: 09/01/2011] [Indexed: 01/06/2023]
35
Sharma S. Non-B DNA Secondary Structures and Their Resolution by RecQ Helicases. J Nucleic Acids 2011;2011:724215. [PMID: 21977309 PMCID: PMC3185257 DOI: 10.4061/2011/724215] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2011] [Accepted: 07/25/2011] [Indexed: 01/14/2023]  Open
36
Mannaert A, Amemiya CT, Bossuyt F. Comparative analyses of vertebrate posterior HoxD clusters reveal atypical cluster architecture in the caecilian Typhlonectes natans. BMC Genomics 2010;11:658. [PMID: 21106068 PMCID: PMC3091776 DOI: 10.1186/1471-2164-11-658] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2010] [Accepted: 11/24/2010] [Indexed: 11/10/2022]  Open
37
Cer RZ, Bruce KH, Mudunuri US, Yi M, Volfovsky N, Luke BT, Bacolla A, Collins JR, Stephens RM. Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes. Nucleic Acids Res 2010;39:D383-91. [PMID: 21097885 PMCID: PMC3013731 DOI: 10.1093/nar/gkq1170] [Citation(s) in RCA: 72] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]  Open
38
Kurahashi H, Inagaki H, Ohye T, Kogo H, Tsutsumi M, Kato T, Tong M, Emanuel BS. The constitutional t(11;22): implications for a novel mechanism responsible for gross chromosomal rearrangements. Clin Genet 2010;78:299-309. [PMID: 20507342 PMCID: PMC3336963 DOI: 10.1111/j.1399-0004.2010.01445.x] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
39
Strawbridge EM, Benson G, Gelfand Y, Benham CJ. The distribution of inverted repeat sequences in the Saccharomyces cerevisiae genome. Curr Genet 2010;56:321-40. [PMID: 20446088 PMCID: PMC2908449 DOI: 10.1007/s00294-010-0302-6] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2010] [Revised: 04/05/2010] [Accepted: 04/08/2010] [Indexed: 02/06/2023]
40
Kurahashi H, Inagaki H, Kato T, Hosoba E, Kogo H, Ohye T, Tsutsumi M, Bolor H, Tong M, Emanuel BS. Impaired DNA replication prompts deletions within palindromic sequences, but does not induce translocations in human cells. Hum Mol Genet 2009;18:3397-406. [PMID: 19520744 PMCID: PMC2729664 DOI: 10.1093/hmg/ddp279] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2009] [Accepted: 06/09/2009] [Indexed: 11/12/2022]  Open
41
Wang G, Zhao J, Vasquez KM. Methods to determine DNA structural alterations and genetic instability. Methods 2009;48:54-62. [PMID: 19245837 PMCID: PMC2693251 DOI: 10.1016/j.ymeth.2009.02.012] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2008] [Accepted: 02/15/2009] [Indexed: 11/16/2022]  Open
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Waller RF, Jackson CJ. Dinoflagellate mitochondrial genomes: stretching the rules of molecular biology. Bioessays 2009;31:237-45. [PMID: 19204978 DOI: 10.1002/bies.200800164] [Citation(s) in RCA: 88] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Wang Y, Leung FCC. A study on genomic distribution and sequence features of human long inverted repeats reveals species-specific intronic inverted repeats. FEBS J 2009;276:1986-98. [PMID: 19243432 DOI: 10.1111/j.1742-4658.2009.06930.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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Lee J, Han K, Meyer TJ, Kim HS, Batzer MA. Chromosomal inversions between human and chimpanzee lineages caused by retrotransposons. PLoS One 2008;3:e4047. [PMID: 19112500 PMCID: PMC2603318 DOI: 10.1371/journal.pone.0004047] [Citation(s) in RCA: 67] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2008] [Accepted: 11/22/2008] [Indexed: 02/02/2023]  Open
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Nair NU, Zhao H. Mutagenic inverted repeat assisted genome engineering (MIRAGE). Nucleic Acids Res 2008;37:e9. [PMID: 19050015 PMCID: PMC2615605 DOI: 10.1093/nar/gkn943] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
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Dishaw LJ, Mueller MG, Gwatney N, Cannon JP, Haire RN, Litman RT, Amemiya CT, Ota T, Rowen L, Glusman G, Litman GW. Genomic complexity of the variable region-containing chitin-binding proteins in amphioxus. BMC Genet 2008;9:78. [PMID: 19046437 PMCID: PMC2632668 DOI: 10.1186/1471-2156-9-78] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2008] [Accepted: 12/01/2008] [Indexed: 01/11/2023]  Open
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Intron splicing-mediated expression of AAV Rep and Cap genes and production of AAV vectors in insect cells. Mol Ther 2008;16:924-30. [PMID: 18388928 DOI: 10.1038/mt.2008.35] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]  Open
48
Zhao G, Chang KY, Varley K, Stormo GD. Evidence for active maintenance of inverted repeat structures identified by a comparative genomic approach. PLoS One 2007;2:e262. [PMID: 17327921 PMCID: PMC1803023 DOI: 10.1371/journal.pone.0000262] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2006] [Accepted: 02/08/2007] [Indexed: 11/19/2022]  Open
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Girirajan S, Mendoza-Londono R, Vlangos CN, Dupuis L, Nowak NJ, Bunyan DJ, Hatchwell E, Elsea SH. Smith–Magenis syndrome and moyamoya disease in a patient with del(17)(p11.2p13.1). Am J Med Genet A 2007;143A:999-1008. [PMID: 17431895 DOI: 10.1002/ajmg.a.31689] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
50
Arlt MF, Durkin SG, Ragland RL, Glover TW. Common fragile sites as targets for chromosome rearrangements. DNA Repair (Amst) 2006;5:1126-35. [PMID: 16807141 DOI: 10.1016/j.dnarep.2006.05.010] [Citation(s) in RCA: 151] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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