Copper sulfate treatment harms zooplankton and ultimately promotes algal blooms: A field mesocosm experiment

Excess nutrient loading often promotes harmful algal blooms. Despite many past studies, few algal bloom control methods show clear, long-term improvements in water quality. For example, chemical treatments are often used to control algal blooms because they can cause large, rapid declines in algal abundance. However, these effects are often transient requiring future treatments that increase costs and risks to water quality. Moreover, empirical tests of repeated applications or combinations of different treatments are rare, even with their common use across industries, like aquaculture and drinking water. To rigorously test the effects of single or combined treatments on water quality in a eutrophic aquaculture pond, copper sulfate pentahydrate (henceforth called copper) and Phoslock were used independently (full dose) or combined (each at half dose) in a 56-day field experiment conducted in a hypereutrophic aquaculture pond. The two copper-containing treatments caused rapid declines (-83%) in algal abundance the day after treatment followed by very large (2,617%) increases after another five days. In contrast, zooplankton were reduced by 43% in the copper treatment but minimally affected (+1%) by the combined treatment the day after application. To further show that copper treatment is the mechanism responsible for the negative effects on zooplankton and phytoplankton, half of the mesocosms for all four treatments were treated with a full dose of copper on day 13 and similar effects on phytoplankton were observed as when copper was initially applied. The combined treatment was more effective at controlling phytoplankton than the copper only treatment, in part, because of lesser negative effects on zooplankton. Overall, this experiment further highlights the long-term, negative effects that chemical treatments, like copper, have on non-target taxa, such as beneficial zooplankton, which limits their potential for ecological and sustainable control of harmful algal blooms.

Are Wild Prey Sufficient for the Top Predators in the Lowland Protected Areas of Nepal?

A balanced equilibrium between carnivores and their prey is crucial for maintaining ecosystem sustainability. In this study, we applied the predator-prey power law equation to assess the balance between the biomass densities of carnivores and their wild prey within Nepal's lowland protected areas during 2013, 2018, and 2022. The estimated value of the power law exponent k for predator-prey biomass was 0.71 (95% CI = 0.39-1.05), indicating an approximate threefold increase in predator biomass density for every fivefold increase in prey biomass density. Consequently, this creates a systematically bottom-heavy predator-prey biomass pyramid. This finding, consistent with the k = 3/4 trophic biomass scaling across ecosystems, suggests that predator biomass is proportionally sustained by prey biomass, indicating a balance between top predators and their wild prey in Nepal's lowland protected areas. We further demonstrated it is possible to retain the overall power law exponent while jointly measuring intraguild competition between two predators with canonical correlation analysis. This understanding opens avenues for future research directed toward unraveling the factors that drive these consistent growth patterns in ecological communities.

Emergent competition shapes top-down versus bottom-up control in multi-trophic ecosystems

Ecosystems are commonly organized into trophic levels-organisms that occupy the same level in a food chain (e.g., plants, herbivores, carnivores). A fundamental question in theoretical ecology is how the interplay between trophic structure, diversity, and competition shapes the properties of ecosystems. To address this problem, we analyze a generalized Consumer Resource Model with three trophic levels using the zero-temperature cavity method and numerical simulations. We derive the corresponding mean-field cavity equations and show that intra-trophic diversity gives rise to an effective "emergent competition" term between species within a trophic level due to feedbacks mediated by other trophic levels. This emergent competition gives rise to a crossover from a regime of top-down control (populations are limited by predators) to a regime of bottom-up control (populations are limited by primary producers) and is captured by a simple order parameter related to the ratio of surviving species in different trophic levels. We show that our theoretical results agree with empirical observations, suggesting that the theoretical approach outlined here can be used to understand complex ecosystems with multiple trophic levels.

The role of fish predators and their foraging traits in shaping zooplankton community structure

Differentiation of foraging traits among predator populations may help explain observed variation in the structure of prey communities. However, few studies have investigated the phenotypic effects of predators on their prey in natural communities. Here, we use a comparative analysis of 78 Greenlandic lakes to examine how foraging trait variation among threespine stickleback populations can help explain variation in zooplankton community composition among lakes. We find that landscape-scale variation in zooplankton composition was jointly explained by lake properties, such as size and water chemistry, and the presence and absence of both stickleback and arctic char. Additional variation in zooplankton community structure can be explained by stickleback jaw protrusion, a trait with known utility for foraging on zooplankton, but only in lakes where stickleback co-occur with arctic char. Overall, our results illustrate how trait variation of predators, alongside other ecosystem properties, can influence the composition of prey communities in nature.

Top-down versus bottom-up: Grazing and upwelling regime alter patterns of primary productivity in a warm-temperate system

Community structure is driven by the interaction of physical processes and biological interactions that can vary across environmental gradients and the strength of top-down control is expected to vary along gradients of primary productivity. In coastal marine systems, upwelling drives regional resource availability through the bottom-up effect of nutrient subsidies. This alters rates of primary production and is expected to alter algae-herbivore interactions in rocky intertidal habitats. Despite the potential for upwelling to alter these interactions, the interaction of upwelling and grazing pressure is poorly understood, particularly for warm-temperate systems. Using in situ herbivore exclusion experiments replicated across multiple upwelling regimes, we investigated the effects of both grazing pressure, upwelling, and their interactions on the sessile invertebrate community and biomass of macroalgal communities in a warm-temperate system. The sessile invertebrate cover showed indirect effects of grazing, being consistently low where algal biomass was high at upwelling sites and at nonupwelling sites when grazers were excluded. The macroalgal cover was greater at upwelling sites when grazers were excluded and there was a strong effect of succession throughout the experimental period. Grazing effects were greater at upwelling sites, particularly during winter months. There was a nonsignificant trend toward greater grazing pressure on early than later successional stages. Our results show that the positive bottom-up effects of nutrient supply on algal production do not overwhelm top-down control in this warm-temperate system but do have knock-on consequences for invertebrates that compete with macroalgae for space. We speculate that global increases in air and sea surface temperatures in warm-temperate systems will promote top-down effects in upwelling regions by increasing herbivore metabolic and growth rates.

Toxicity and Starvation Induce Major Trophic Isotope Variation in Daphnia Individuals: A Diet Switch Experiment Using Eight Phytoplankton Species of Differing Nutritional Quality

Stable isotope values can express resource usage by organisms, but their precise interpretation is predicated using a controlled experiment-based validation process. Here, we develop a stable isotope tracking approach towards exploring resource shifts in a key primary consumer species Daphnia magna. We used a diet switch experiment and model fitting to quantify the stable carbon (δ¹³C) and nitrogen (δ¹⁵N) isotope turnover rates and discrimination factors for eight dietary sources of the plankton species that differ in their cellular organization (unicellular or filamentous), pigment and nutrient compositions (sterols and polyunsaturated fatty acids), and secondary metabolite production rates. We also conduct a starvation experiment. We evaluate nine tissue turnover models using Akaike's information criterion and estimate the repetitive trophic discrimination factors. Using the parameter estimates, we calculate the hourly stable isotope turnover rates. We report an exceedingly faster turnover value following dietary switching (72 to 96 h) and a measurable variation in trophic discrimination factors. The results show that toxic stress and the dietary quantity and quality induce trophic isotope variation in Daphnia individuals. This study provides insight into the physiological processes that underpin stable isotope patterns. We explicitly test multiple alternative dietary sources and fasting and discuss the parameters that are fundamental for field- and laboratory-based stable isotope studies.

A 17-Year Study of the Response of Populations to Different Patterns in Antlerless Proportion of Imposed Culls: Antlerless Culling Reduces Overabundant Deer Population

Increasing populations of large herbivores have caused environmental damage around the world, and it is necessary to improve population management strategies. Culling is a traditional management method. Antlerless deer proportions, consisting of adult female deer and fawn in Cervidae in wildlife statistics, are directly related to population increases; thus, the culling-based removal of individuals from habitats and the removal of these antlerless individuals by game hunting and nuisance control might be effective approaches for reducing population sizes. We evaluated the effectiveness of antlerless culling on 17-year density trends in the sika deer (Cervus nippon) population across an area of 1175 km2 in Fukuoka Prefecture (Japan). In 11 out of 47 grids (area measuring 5 by 5 km), the densities of sika deer tended to decline; meanwhile, in the remaining 36 grids, the densities increased. These density trends were explained by changes in the proportion of antlerless culling, as the densities declined with increasing proportions of antlerless deer. The results affirm the theory that antlerless culling is effective in population management; it is posited that antlerless-biased culling could be a crucial measure in managing overabundant populations of herbivores, contributing to more effective conservation of forest environments.

Expanding the invasion toolbox: including stable isotope analysis in risk assessment

Species introductions are a major concern for ecosystem functioning, socio-economic wealth, and human well-being. Preventing introductions proved to be the most effective management strategy, and various tools such as species distribution models and risk assessment protocols have been developed or applied to this purpose. These approaches use information on a species to predict its potential invasiveness and impact in the case of its introduction into a new area. At the same time, much biodiversity has been lost due to multiple drivers. Ways to determine the potential for successful reintroductions of once native but now extinct species as well as assisted migrations are yet missing. Stable isotope analyses are commonly used to reconstruct a species’ feeding ecology and trophic interactions within communities. Recently, this method has been used to predict potentially arising trophic interactions in the absence of the target species. Here we propose the implementation of stable isotope analysis as an approach for assessment schemes to increase the accuracy in predicting invader impacts as well as the success of reintroductions and assisted migrations. We review and discuss possibilities and limitations of this methods usage, suggesting promising and useful applications for scientists and managers.

Trophic structure and origin of resources of soil macrofauna in the salt marsh of the Wadden Sea: a stable isotope (15N, 13C) study

Salt marshes exist along the gradient of the marine mudflat to the terrestrial dunes, with a gradient of shore height and associated plant zonation. The lower salt marsh (LSM) extends from the mean high tidal level to 35 cm above that level and is followed by the upper salt marsh (USM). Despite changes in the amount of allochthonous marine input and in abiotic conditions, little is known about changes in the trophic structure and used of basal resources by the soil macrofauna along marine-terrestrial boundaries. Natural variations in carbon stable isotope ratios (δ13C signatures) allow insight into basal resources of consumers such as marine algae, terrestrial C3 and C4 photosynthesising plants. Furthermore, variations in nitrogen stable isotope ratios (δ15N signatures) allow insight into the trophic position of consumers. We investigated spatial and temporal changes in stable isotope signatures in salt marsh soil macrofauna of the island of Spiekeroog, German Wadden Sea. The range of δ15N signatures indicated no changes in food chain length across salt marsh zones with consumers in both zones comprising primary decomposers, secondary decomposers and first order predators. However, the trophic position of individual species changed between zones, but in particular with season. Contrasting δ15N signatures, the range in δ13C signatures in the LSM was twice that in the USM indicating a wider range of resources consumed. Bayesian mixing models indicated predominant autochthonous resource use in both the LSM and USM, with the use of marine allochthonous resources never exceeding 29.6%. However, the models also indicate an increase in the use of marine resources in certain species in the LSM with no use in the USM. Overall, the results indicate that the resource use of salt marsh macrofauna varies more in space than in time, with the food web being generally based on autochthonous rather than allochthonous resources. However, there also is trophic plasticity in certain species across both temporal and spatial scales including variations in the use of allochthonous resources. Generally, however, marine input contributes little to the nutrition of salt marsh soil macroinvertebrates.

Behavioral Interactions between Bacterivorous Nematodes and Predatory Bacteria in a Synthetic Community

Theory and empirical studies in metazoans predict that apex predators should shape the behavior and ecology of mesopredators and prey at lower trophic levels. Despite the ecological importance of microbial communities, few studies of predatory microbes examine such behavioral res-ponses and the multiplicity of trophic interactions. Here, we sought to assemble a three-level microbial food chain and to test for behavioral interactions between the predatory nematode Caenorhabditis elegans and the predatory social bacterium Myxococcus xanthus when cultured together with two basal prey bacteria that both predators can eat—Escherichia coli and Flavobacterium johnsoniae. We found that >90% of C. elegans worms failed to interact with M. xanthus even when it was the only potential prey species available, whereas most worms were attracted to pure patches of E. coli and F. johnsoniae. In addition, M. xanthus altered nematode predatory behavior on basal prey, repelling C. elegans from two-species patches that would be attractive without M. xanthus, an effect similar to that of C. elegans pathogens. The nematode also influenced the behavior of the bacterial predator: M. xanthus increased its predatory swarming rate in response to C. elegans in a manner dependent both on basal-prey identity and on worm density. Our results suggest that M. xanthus is an unattractive prey for some soil nematodes and is actively avoided when other prey are available. Most broadly, we found that nematode and bacterial predators mutually influence one another’s predatory behavior, with likely consequences for coevolution within complex microbial food webs.

The genetic and ecophysiological diversity of Microcystis

Microcystis is a cyanobacterium that forms toxic blooms in freshwater ecosystems around the world. Biological variation among taxa within the genus is apparent through genetic and phenotypic differences between strains and via the spatial and temporal distribution of strains in the environment, and this fine-scale diversity exerts strong influence over bloom toxicity. Yet we do not know how varying traits of Microcystis strains govern their environmental distribution, the tradeoffs and links between these traits, or how they are encoded at the genomic level. Here we synthesize current knowledge on the importance of diversity within Microcystis and on the genes and traits that likely underpin ecological differentiation of taxa. We briefly review spatial and environmental patterns of Microcystis diversity in the field and genetic evidence for cohesive groups within Microcystis. We then compile data on strain-level diversity regarding growth responses to environmental conditions and explore evidence for variation of community interactions across Microcystis strains. Potential links and tradeoffs between traits are identified and discussed. The resulting picture, while incomplete, highlights key knowledge gaps that need to be filled to enable new models for predicting strain-level dynamics, which influence the development, toxicity and cosmopolitan nature of Microcystis blooms.

Mouse Lemurs in an Assemblage of Cheirogaleid Primates in Menabe Central, Western Madagascar – Three Reasons to Coexist

Ecological communities are structured by interactions between coexisting species that mutually influence their distribution and abundance. Ecologically similar species are expected to exclude one another from suitable habitat, so the coexistence of two mouse lemur species in an assemblage of several closely related cheirogaleid primates in the central Menabe region of Madagascar requires explanation. We assessed the occurrence of Madame Berthe’s mouse lemurs (Microcebus berthae) and Gray mouse lemurs (Microcebus murinus), and of two larger cheirogaleids, Coquerel’s giant mouse lemur (Mirza coquereli) and the western fat-tailed dwarf lemur (Cheirogaleus medius), by nocturnal line transect walks between 2003 and 2007. We explored interspecific interactions for four different scenarios with varying resource availability (degraded and non-degraded habitat in the wet and dry season), both on the regional spatial scale and on a finer local (transect) scale. We tested whether the interspecific distribution of mouse lemur individuals indicates interspecific competition and whether their regional coexistence might be stabilized by interactions with M. coquereli or C. medius. We developed the “Inter-Species Index of Attraction” (ISIA) to quantify the observed interspecific interactions within transects and determined if these were significantly different from a null model generated by a combination of randomization and bootstrapping to control for intraspecific aggregation. For the two mouse lemurs, interspecific spatial exclusion was most pronounced during the resource-poor dry season, consistent with the hypothesis of feeding competition. Seasonally varying distribution patterns indicated resource tracking in a spatio-temporally heterogeneous environment. The interspecific distribution of individuals suggested that the larger cheirogaleids benefit M. berthae at the expense of the more abundant M. murinus: spatial associations of both, M. coquereli and C. medius, with M. murinus were negative in most scenarios and across spatial scales, but neutral or even positive with M. berthae. Thus, our study revealed that coexistence among ecologically similar heterospecifics can rely on complex density-mediated interspecific processes varying with habitat quality and season. With regard to the stability of animal assemblages, this insight has major implications for biodiversity conservation.

Relative strength of top-down effects of an invasive fish and bottom-up effects of nutrient addition in a simple aquatic food web

Introduction of exotic predators or runoff of fertilizers can alter aquatic food webs, in particular zooplankton communities, through top-down and bottom-up effects. In a mesocosm experiment, we manipulated the density of Western Mosquitofish (Gambusia affinis) and nutrient levels (nitrate and phosphate independently) and observed effects on zooplankton and phytoplankton in a fall, temperate zone system. If top-down regulation were important, we expected mosquitofish predation to reduce zooplankton abundance, which would indirectly benefit phytoplankton. If bottom-up regulation were important, we expected nutrient addition to increase both primary producers and zooplankton. Western Mosquitofish predation significantly decreased the abundance of several zooplankton taxa, resulting in a trophic cascade with increased chlorophyll a (i.e., primary productivity). This effect did not differ between mesocosms with 5 or 10 fish. Nutrient addition had no significant effects on zooplankton; however, chlorophyll a was positively affected by both nitrogen addition and phosphorus addition. Our results suggest weak bottom-up regulation in our experimental community, but strong top-down regulation, emphasizing the potential consequences of introducing non-native Western Mosquitofish to native aquatic ecosystems.

Shotgun metagenomics reveal a diverse assemblage of protists in a model Antarctic soil ecosystem

The soils of the McMurdo Dry Valleys (MDV) of Antarctica are established models for understanding fundamental processes in soil ecosystem functioning (e.g. ecological tipping points, community structuring and nutrient cycling) because the extreme physical environment drastically reduces biodiversity and ecological complexity. Understanding the functioning of MDV soils requires in-depth knowledge of the diversity of MDV soil species. Protists, which contribute significantly to soil ecosystem functioning worldwide, remain poorly characterized in the MDV. To better assess the diversity of MDV protists, we performed shotgun metagenomics on 18 sites representing a variety of landscape features and edaphic variables. Our results show MDV soil protists are diverse at both the genus (155 of 281 eukaryote genera) and family (120) levels, but comprise only 6% of eukaryotic reads. Protists are structured by moisture, total N and distance from the local coast and possess limited richness in arid (< 5% moisture) and at high elevation sites, known drivers of communities in the MDV. High relative diversity and broad distribution of protists in our study promotes these organisms as key members of MDV soil microbiomes and the MDV as a useful system for understanding the contribution of soil protists to the structure of soil microbiomes.

Assessing lake ecological status across a trophic gradient through environmental and biological variables

The Water Framework Directive was widely welcomed because it sought to integrate chemical and biological elements of aquatic ecosystems to achieve 'good ecological status', reflecting at most slight anthropogenic impact. However, implementation has been criticised because of the failure to adequately integrate these elements and assess status of the whole ecosystem. In this study, a suite of environmental and biotic variables was measured to assess their relative importance as predictors of lake status for 50 lakes in the north of the island of Ireland. Total Phosphorus (TP) had a strong effect on taxon biomasses and ecological quality ratios (EQR) for most taxa, as expected, but other environmental variables, such as pH, water colour and spatial location, were also important. Most variance in mean EQR, the average of the taxon values, was predicted by five environmental variables (chlorophyll a, TP, population density, water colour and elevation) and whether (alien) cyprinid fish were present. Oligotrophic lakes with cyprinid fish had lower mean EQRs than cyprinid-free lakes, indicating the importance of recording species introductions when assessing lake status. Strong evidence for bottom-up effects was also detected, and cyprinids probably influenced trophic structure by increasing nutrient release from the sediment rather than by top-down effects. Phytoplankton biomass, fish biomasses, and the percentage of predatory fish, increased with TP. Our results further emphasize the need to adopt a more integrated approach when assessing lake status.

Consequences of Multispecies Introductions on Island Ecosystems

The rate of non-native species introductions continues to increase, with directionality from continents to islands. It is no longer single species but entire networks of coevolved and newly interacting continental species that are establishing on islands. The consequences of multispecies introductions on the population dynamics and interactions of native and introduced species will depend on the form of trophic limitation on island ecosystems. Freed from biotic constraints in their native range, species introduced to islands no longer experience top-down limitation, instead becoming limited by and disrupting bottom-up processes that dominate on resource-limited islands. This framing of the ecological and evolutionary relationships among introduced species with one another and their ecosystem has important consequences for conservation. Whereas on continents the focus of conservation is on restoring native apex species and top-down limitation, on islands the focus must instead be on removing introduced animal and plant species to restore bottom-up limitation.

Bacterial predator-prey coevolution accelerates genome evolution and selects on virulence-associated prey defences

Generalist bacterial predators are likely to strongly shape many important ecological and evolutionary features of microbial communities, for example by altering the character and pace of molecular evolution, but investigations of such effects are scarce. Here we report how predator-prey interactions alter the evolution of fitness, genomes and phenotypic diversity in coevolving bacterial communities composed of Myxococcus xanthus as predator and Escherichia coli as prey, relative to single-species controls. We show evidence of reciprocal adaptation and demonstrate accelerated genomic evolution specific to coevolving communities, including the rapid appearance of mutator genotypes. Strong parallel evolution unique to the predator-prey communities occurs in both parties, with predators driving adaptation at two prey traits associated with virulence in bacterial pathogens-mucoidy and the outer-membrane protease OmpT. Our results suggest that generalist predatory bacteria are important determinants of how complex microbial communities and their interaction networks evolve in natural habitats.

Resource heterogeneity structures aquatic bacterial communities

Microorganisms are strongly influenced by the bottom-up effects of resource supply. While many species respond to fluctuations in the concentration of resources, microbial diversity may also be affected by the heterogeneity of the resource pool, which often reflects a mixture of distinct molecules. To test this hypothesis, we examined resource-diversity relationships for bacterioplankton in a set of north temperate lakes that varied in their concentration and composition of dissolved organic matter (DOM), which is an important resource for heterotrophic bacteria. Using 16S rRNA transcript sequencing and ecosystem metabolomics, we documented strong relationships between bacterial alpha-diversity (richness and evenness) and the bulk concentration and the number of molecules in the DOM pool. Similarly, bacterial community beta-diversity was related to both DOM concentration and composition. However, in some lakes the relative abundance of resource generalists, which was inversely related to the DOM concentration, may have reduced the effect of DOM heterogeneity on community composition. Together, our results demonstrate the potential metabolic interactions between bacteria and organic matter and suggest that changes in organic matter composition may alter the structure and function of bacterial communities.

Consumer adaptation mediates top-down regulation across a productivity gradient

Humans have artificially enhanced the productivity of terrestrial and aquatic ecosystems on a global scale by increasing nutrient loading. While the consequences of eutrophication are well known (e.g., harmful algal blooms and toxic cyanobacteria), most studies tend to examine short-term responses relative to the time scales of heritable adaptive change. Thus, the potential role of adaptation by organisms in stabilizing the response of ecological systems to such perturbations is largely unknown. We tested the hypothesis that adaptation by a generalist consumer (Daphnia pulicaria) to toxic prey (cyanobacteria) mediates the response of plankton communities to nutrient enrichment. Overall, the strength of Daphnia's top-down effect on primary producer biomass increased with productivity. However, these effects were contingent on prey traits (e.g., rare vs. common toxic cyanobacteria) and consumer genotype (i.e., tolerant vs sensitive to toxic cyanobacteria). Tolerant Daphnia strongly suppressed toxic cyanobacteria in nutrient-rich ponds, but sensitive Daphnia did not. In contrast, both tolerant and sensitive Daphnia genotypes had comparable effects on producer biomass when toxic cyanobacteria were absent. Our results demonstrate that organismal adaptation is critical for understanding and predicting ecosystem-level consequences of anthropogenic environmental perturbations.

Effects of endophytic fungi diversity in different coniferous species on the colonization of Sirex noctilio (Hymenoptera: Siricidae)

Diversity of endophyte communities of the host tree affects the oviposition behavior of Sirex noctilio and the growth of its symbiotic fungus Amylostereum areolatum. In this study, we evaluated the structure and distribution of endophyte communities in the host tree (Pinus sylvestris var. mongolica) of S. noctilio and eight potential host tree species in China. Overall, 1626 fungal strains were identified by using internal transcribed spacer sequencing and morphological features. Each tree species harbored a fungal endophyte community with a unique structure, with the genus Trichoderma common to different communities. The isolation and colonization rate of endophytes from Pinus tabulaeformis, followed by P. sylvestris var. mongolica, were lower than those of other species. The proportion of endophytic fungi that strongly inhibited S. noctilio and symbiotic fungus growth was significantly lower in P. tabulaeformis, P. sylvestris var. mongolica and P. yunnanensis. Further, the diversity of the endophyte communities appeared to be predominantly influenced by tree species and the region, and, to a lesser extent, by the trunk height. Collectively, the data indicated that P. tabulaeformis might be at a higher risk of invasion and colonization by S. noctilio than other trees.

Pyramids and cascades: a synthesis of food chain functioning and stability

Food chain theory is one of the cornerstones of ecology, providing many of its basic predictions, such as biomass pyramids, trophic cascades and predator-prey oscillations. Yet, ninety years into this theory, the conditions under which these patterns may occur and persist in nature remain subject to debate. Rather than address each pattern in isolation, we propose that they must be understood together, calling for synthesis in a fragmented landscape of theoretical and empirical results. As a first step, we propose a minimal theory that combines the long-standing energetic and dynamical approaches of food chains. We chart theoretical predictions on a concise map, where two main regimes emerge: across various functioning and stability metrics, one regime is characterised by pyramidal patterns and the other by cascade patterns. The axes of this map combine key physiological and ecological variables, such as metabolic rates and self-regulation. A quantitative comparison with data sheds light on conflicting theoretical predictions and empirical puzzles, from size spectra to causes of trophic cascade strength. We conclude that drawing systematic connections between various existing approaches to food chains, and between their predictions on functioning and stability, is a crucial step in confronting this theory to real ecosystems.

Predation risk and patch size jointly determine perceived patch quality in ovipositing treefrogs, Hyla chrysoscelis

Two of the most important factors determining community structure and diversity within and among habitat patches are patch size and patch quality. Despite the importance of patch size in existing paradigms in island biogeography, metapopulation biology, landscape ecology, and metacommunity ecology, and growing conservation concerns with habitat fragmentation, there has been little investigation into how patch size interacts with patch quality. We crossed three levels of patch size (1.13 m² , 2.54 m² and 5.73 m² ) with two levels of patch quality (fish presence/absence, green sunfish [Lepomis cyanellus] and golden shiners [Notemigonus crysoleucus]) in six replicate experimental landscapes (3 × 2 × 6 = 36 patches). Both fish predators have been previously shown to elicit avoidance in ovipositing treefrogs. We examined how patch size and patch quality, as well as the interaction between size and quality, affected female oviposition preference and male calling site choice in a natural population of treefrogs (Hyla chrysoscelis). Females almost exclusively oviposited in the largest fishless patches, indicating that females use both risk, in the form of fish predators, and size itself, as components of patch quality. Females routinely use much smaller natural and experimental patches, suggesting that the responses to patch size are highly context dependent. Responses to fish were unaffected by patch size. Male responses largely mimicked those of females, but did not drive female oviposition. We suggest that patch size itself functions as another aspect of patch quality for H. chrysoscelis, and serves as another niche dimension across which species may behaviorally sort in natural systems. Because of strong, shared avoidance of fish (as well as other predators), among many colonizing taxa, patch size may be a critical factor in species sorting and processes of community assembly in freshwater habitats, allowing species to behaviorally segregate along gradients of patch size in fishless ponds. Conversely, lack of variation in patch size may concentrate colonization activity, leading to intensification of species interactions and/or increased use of lesser quality patches.

Changes in the relationship between zooplankton and phytoplankton biomasses across a eutrophication gradient

The relationship between zooplankton biomass and phytoplankton biomass can provide insight into the structure and function of lake biological communities. We used a Bayesian network model to analyze a continental-scale data dataset to estimate changes in the relationship between zooplankton (Z) and phytoplankton (P) biomasses along a eutrophication gradient. The Bayesian network model allowed us to combine two different measurements of phytoplankton biomass (chlorophyll a concentration and directly observed biovolume) to improve the precision of estimates of true biomass within each sample. The model also allowed us to estimate separate relationships between P and zooplankton abundance and between P and mean individual zooplankton biomass and then to combine these two relationships into an estimate of seasonal mean zooplankton biomass. The resulting analysis indicated that seasonal mean zooplankton biomass increased proportionally with phytoplankton biomass in oligotrophic lakes, yielding a constant ratio between Z and P and suggested that bottom-up forces determined zooplankton biomass in these systems. In eutrophic lakes, seasonal mean zooplankton biomass was nearly constant with increases in phytoplankton biomass, yielding a decrease in the ratio between Z and P with increasing eutrophication. Bottom-up forces, as quantified by an increase in the proportion of cyanobacteria, accounted for approximately one fifth of the residual variance in the model as the relationship between Z and P changed from direct proportionality in oligotrophic lakes to the nearly constant value of Z observed in eutrophic lakes, suggesting that a combination of both top-down and bottom-up forces likely determined zooplankton biomass in eutrophic lakes.

Temporal Variation in Trophic Cascades

The trophic cascade has emerged as a key paradigm in ecology. Although ecologists have made progress in understanding spatial variation in the strength of trophic cascades, temporal variation remains relatively unexplored. Our review suggests that strong trophic cascades are often transient, appearing when ecological conditions support high consumer abundance and rapidly growing, highly edible prey. Persistent top-down control is expected to decay over time in the absence of external drivers, as strong top-down control favors the emergence of better-defended resources. Temporal shifts in cascade strength—including those driven by contemporary global change—can either stabilize or destabilize ecological communities. We suggest that a more temporally explicit approach can improve our ability to explain the drivers of trophic cascades and predict the impact of changing cascade strength on community dynamics.

Latitudinal gradients in biotic niche breadth vary across ecosystem types

Several properties of food webs-the networks of feeding links between species-are known to vary systematically with the species richness of the underlying community. Under the 'latitude-niche breadth hypothesis', which predicts that species in the tropics will tend to evolve narrower niches, one might expect that these scaling relationships could also be affected by latitude. To test this hypothesis, we analysed the scaling relationships between species richness and average generality, vulnerability and links per species across a set of 196 empirical food webs. In estuarine, marine and terrestrial food webs there was no effect of latitude on any scaling relationship, suggesting constant niche breadth in these habitats. In freshwater communities, on the other hand, there were strong effects of latitude on scaling relationships, supporting the latitude-niche breadth hypothesis. These contrasting findings indicate that it may be more important to account for habitat than latitude when exploring gradients in food-web structure.

Climate constrains lake community and ecosystem responses to introduced predators

Human activities have resulted in rising temperatures and the introduction or extirpation of top predators worldwide. Both processes generate cascading impacts throughout food webs and can jeopardize important ecosystem services. We examined the impact of fish stocking on communities and ecosystems in California mountain lakes across an elevation (temperature and dissolved organic carbon) gradient to determine how trophic cascades and ecosystem function vary with climate. Here, we show that the impact of fish on the pelagic consumer-to-producer biomass ratio strengthened at low elevation, while invertebrate community composition and benthic ecosystem rates (periphyton production and litter decomposition) were most influenced by predators at high elevation. A warming climate may therefore alter the stability of lake ecosystems by shifting the strength of top-down control by introduced predators over food web structure and function.

The predator-prey power law: Biomass scaling across terrestrial and aquatic biomes

Ecosystems exhibit surprising regularities in structure and function across terrestrial and aquatic biomes worldwide. We assembled a global data set for 2260 communities of large mammals, invertebrates, plants, and plankton. We find that predator and prey biomass follow a general scaling law with exponents consistently near ¾. This pervasive pattern implies that the structure of the biomass pyramid becomes increasingly bottom-heavy at higher biomass. Similar exponents are obtained for community production-biomass relations, suggesting conserved links between ecosystem structure and function. These exponents are similar to many body mass allometries, and yet ecosystem scaling emerges independently from individual-level scaling, which is not fully understood. These patterns suggest a greater degree of ecosystem-level organization than previously recognized and a more predictive approach to ecological theory.

Predicted Shifts in Small Mammal Distributions and Biodiversity in the Altered Future Environment of Alaska: An Open Access Data and Machine Learning Perspective

Climate change is acting to reallocate biomes, shift the distribution of species, and alter community assemblages in Alaska. Predictions regarding how these changes will affect the biodiversity and interspecific relationships of small mammals are necessary to pro-actively inform conservation planning. We used a set of online occurrence records and machine learning methods to create bioclimatic envelope models for 17 species of small mammals (rodents and shrews) across Alaska. Models formed the basis for sets of species-specific distribution maps for 2010 and were projected forward using the IPCC (Intergovernmental Panel on Climate Change) A2 scenario to predict distributions of the same species for 2100. We found that distributions of cold-climate, northern, and interior small mammal species experienced large decreases in area while shifting northward, upward in elevation, and inland across the state. In contrast, many southern and continental species expanded throughout Alaska, and also moved down-slope and toward the coast. Statewide community assemblages remained constant for 15 of the 17 species, but distributional shifts resulted in novel species assemblages in several regions. Overall biodiversity patterns were similar for both time frames, but followed general species distribution movement trends. Biodiversity losses occurred in the Yukon-Kuskokwim Delta and Seward Peninsula while the Beaufort Coastal Plain and western Brooks Range experienced modest gains in species richness as distributions shifted to form novel assemblages. Quantitative species distribution and biodiversity change projections should help land managers to develop adaptive strategies for conserving dispersal corridors, small mammal biodiversity, and ecosystem functionality into the future.

Plant community composition determines the strength of top-down control in a soil food web motif

Top-down control of prey by predators are magnified in productive ecosystems due to higher sustenance of prey communities. In soil micro-arthropod food webs, plant communities regulate the availability of basal resources like soil microbial biomass. Mixed plant communities are often associated with higher microbial biomass than monocultures. Therefore, top-down control is expected to be higher in soil food webs of mixed plant communities. Moreover, higher predator densities can increase the suppression of prey, which can induce interactive effects between predator densities and plant community composition on prey populations. Here, we tested the effects of predator density (predatory mites) on prey populations (Collembola) in monoculture and mixed plant communities. We hypothesized that top-down control would increase with predator density but only in the mixed plant community. Our results revealed two contrasting patterns of top-down control: stronger top-down control of prey communities in the mixed plant community, but weaker top-down control in plant monocultures in high predator density treatments. As expected, higher microbial community biomass in the mixed plant community sustained sufficiently high prey populations to support high predator density. Our results highlight the roles of plant community composition and predator densities in regulating top-down control of prey in soil food webs.

Preliminary evidence for the organisation of a bacterial community by zooplanktivores at the top of an estuarine planktonic food web

As part of a larger investigation, the effect of apex predation on estuarine bacterial community structure, through trophic cascading, was investigated using experimental in situ mesocosms. Through either the removal (filtration) or addition of specific size classes of planktonic groups, four different trophic scenarios were established using estuarine water and its associated plankton. One such treatment represented a "natural" scenario in which stable apex predatory pressure was qualified. Water samples were collected over time from each of the treatments for bacterial community evaluation. These samples were assessed through pyrosequencing of the variable regions 4 and 5 of the bacterial 16S rRNA gene and analysed at the species operational taxonomic unit (OTU) level using a community procedure. The blue-green group dominated the samples, followed by Proteobacteria and Bacteroidetes. Samples were the most similar among treatments at the commencement of the experiment. While the bacterial communities sampled within each treatment changed over time, the deviation from initial appeared to be linked to the treatment trophic scenarios. The least temporal deviation-from-initial in bacterial community was found within the stable apex predatory pressure treatment. These findings are consistent with trophic cascade theory, whereby predators mediate interactions at multiple lower trophic levels with consequent repercussions for diversity.

Unity through nonlinearity: a unimodal coral-nutrient interaction

The magnitude and direction of biological effects of environmental disturbances can vary considerably, especially among studies that use presence/absence manipulations. Because nonlinearities (e.g., humped relationships) are common in biological systems, this heterogeneity in effects may arise if systems are similar in their responses but specific studies use few (e.g., two) levels, or a narrow range, of a factor. To test whether nonlinearity can explain heterogeneous responses to a common environmental disturbance, I examined the effect of nutrient enrichment on coral growth, which has been previously shown using simple (e.g., two-level) manipulations to yield positive, negative, or neutral responses. I subjected corals (Porites) to a nutrient gradient in situ for 28 days. Coral growth rate increased (2.4-fold) then decreased (2.7-fold) with enrichment, returning to near-ambient values at the highest nutrient levels. This unimodal response could explain disparities among past findings and provides a compelling case for using regression designs to understand heterogeneity within ecological interactions.

Patch quality and context, but not patch number, drive multi-scale colonization dynamics in experimental aquatic landscapes

Colonization and extinction are primary drivers of local population dynamics, community structure, and spatial patterns of biological diversity. Existing paradigms of island biogeography, metapopulation biology, and metacommunity ecology, as well as habitat management and conservation biology based on those paradigms, emphasize patch size, number, and isolation as primary characteristics influencing colonization and extinction. Habitat selection theory suggests that patch quality could rival size, number, and isolation in determining rates of colonization and resulting community structure. We used naturally colonized experimental landscapes to address four issues: (a) how do colonizing aquatic beetles respond to variation in patch number, (b) how do they respond to variation in patch quality, (c) does patch context affect colonization dynamics, and (d) at what spatial scales do beetles respond to habitat variation? Increasing patch number had no effect on per patch colonization rates, while patch quality and context were critical in determining colonization rates and resulting patterns of abundance and species richness at multiple spatial scales. We graphically illustrate how variation in immigration rates driven by perceived predation risk (habitat quality) can further modify dynamics of the equilibrium theory of island biogeography beyond predator-driven effects on extinction rates. Our data support the importance of patch quality and context as primary determinants of colonization rate, occupancy, abundance, and resulting patterns of species richness, and reinforce the idea that management of metapopulations for species preservation, and metacommunities for local and regional diversity, should incorporate habitat quality into the predictive equation.

Forest-fragment quality rather than matrix habitat shapes herbivory on tree recruits in South Africa

Forest fragmentation can alter herbivory on tree recruits with possible consequences for regeneration. We assessed effects of forest-fragment quality (tree diversity, vegetation complexity, relative abundance of pioneer trees) and matrix habitat on arthropods and herbivory in KwaZulu-Natal, South Africa. We compared arthropod abundances and herbivory on woody seedlings and saplings among four forest-fragment types differing in size and matrix (large fragments and small fragments surrounded by natural grassland, eucalypt and sugarcane plantations; nplots = 24) using analyses of covariance. We recorded 3385 arthropods and inspected 897 seedlings (71 species) and 876 saplings (91 species). Relative abundance of predators increased with fragment quality; that of herbivores decreased. Herbivory responses to fragment quality varied: seedling herbivory decreased with relative abundance of pioneers and sapling herbivory increased with vegetation complexity. Matrix effects were low with little variation in relative abundance of predators (0.39–0.53) and herbivores (0.22–0.32), proportion of seedling (8.3–11.0%) and sapling herbivory (12.4–14.3%) among the forest-fragment types. These findings indicate that herbivory on tree recruits is mediated by forest-fragment quality rather than matrix habitat. Future studies should evaluate whether contrasting effects of fragment quality on arthropods and herbivory are caused by weak trophic interactions and variable herbivore compositions.

The stabilizing effects of genetic diversity on predator-prey dynamics

Heterogeneity among prey in their susceptibility to predation is a potentially important stabilizer of predator-prey interactions, reducing the magnitude of population oscillations and enhancing total prey population abundance. When microevolutionary responses of prey populations occur at time scales comparable to population dynamics, adaptive responses in prey defense can, in theory, stabilize predator-prey dynamics and reduce top-down effects on prey abundance. While experiments have tested these predictions, less explored are the consequences of the evolution of prey phenotypes that can persist in both vulnerable and invulnerable classes. We tested this experimentally using a laboratory aquatic system composed of the rotifer Brachionus calyciflorus as a predator and the prey Synura petersenii, a colony-forming alga that exhibits genetic variation in its propensity to form colonies and colony size (larger colonies are a defense against predators). Prey populations of either low initial genetic diversity and low adaptive capacity or high initial genetic diversity and high adaptive capacity were crossed with predator presence and absence. Dynamics measured over the last 127 days of the 167-day experiment revealed no effects of initial prey genetic diversity on the average abundance or temporal variability of predator populations. However, genetic diversity and predator presence/absence interactively affected prey population abundance and stability; diversity of prey had no effects in the absence of predators but stabilized dynamics and increased total prey abundance in the presence of predators. The size structure of the genetically diverse prey populations diverged from single strain populations in the presence of predators, showing increases in colony size and in the relative abundance of cells found in colonies. Our work sheds light on the adaptive value of colony formation and supports the general view that genetic diversity and intraspecific trait variation of prey can play a vital role in the short-term dynamics and stability of planktonic predator-prey systems.

Propagule pressure and climate contribute to the displacement of Linepithema humile by Pachycondyla chinensis

Identifying mechanisms governing the establishment and spread of invasive species is a fundamental challenge in invasion biology. Because species invasions are frequently observed only after the species presents an environmental threat, research identifying the contributing agents to dispersal and subsequent spread are confined to retrograde observations. Here, we use a combination of seasonal surveys and experimental approaches to test the relative importance of behavioral and abiotic factors in determining the local co-occurrence of two invasive ant species, the established Argentine ant (Linepithema humile Mayr) and the newly invasive Asian needle ant (Pachycondyla chinensis Emery). We show that the broader climatic envelope of P. chinensis enables it to establish earlier in the year than L. humile. We also demonstrate that increased P. chinensis propagule pressure during periods of L. humile scarcity contributes to successful P. chinensis early season establishment. Furthermore, we show that, although L. humile is the numerically superior and behaviorally dominant species at baits, P. chinensis is currently displacing L. humile across the invaded landscape. By identifying the features promoting the displacement of one invasive ant by another we can better understand both early determinants in the invasion process and factors limiting colony expansion and survival.