Microbial diversity of vermicompost bacteria that exhibit useful agricultural traits and waste management potential

Adoption of a biologically-enhanced agricultural management (BEAM) approach in agroecosystems for regenerating soil fertility, improving farm profitability and achieving productive utilization of atmospheric CO2

Background

A 4-year field study, on the adoption of a Biologically-Enhanced Agricultural Management (BEAM) protocol, in a cotton/cover-crop rotation in Turkey, was designed to observe "change-over-time" of soil organic carbon (SOC%) and total soil nitrogen (TSN%) at three soil profile depths (0-15 cm, 15-30 cm and 30-45 cm) while tracking farm productivity and profitability.

Methods

BEAM systems employ regenerative practices: (a) no-till, (b) no, or reduced synthetic nutrient amendments, (c) continuous roots in the ground (commodity/cover), accompanied with an injection (in-furrow at planting) of an extract of beneficial microbes, from a Johnson-Su bioreactor. Three field nitrogen treatments: (1) BEAM+100% N (203 kg N ha-1); (2) BEAM+15% N (30.53 kg N ha-1); and (3) BEAM-0% N (No N applied), were implemented, on a 5.22-hectare plot, to assess the influence of BEAM protocols and nitrogen amendments, on SOC%, TSN%, cotton production, and profitability.

Results

The SOC%, in the 0-15 cm soil profile demonstrated a significant increase from 0.39% SOC to 1.83% SOC, for a total increase of 1.44%, over the 4-year study period, (y = 0.3136x + 0.1206; r2 = 0.96; F(1,2) = 45.1616, p = 0.02143); The 15-30 cm soil profile demonstrated a non-significant loss of -0.23% SOC (y = -0.3161x + 0.156; r2 = 0.3183; F(1,2) = 0.9339, p = 0.4358), and the 30-45 cm soil profile exhibited a significant increase of 0.28% SOC; (y = 0.0477x + 0.4743; r2 = 0.9363; F(1,2) = 29.4005, p = 0.03237). Annual SOC cumulative increases of ~6.59 metric tons (t) carbon (C) ha-1yr-1, were observed, from 2019 to 2023, in the top 45 cm of the soil profile along with annual TSN increases of ~0.68 t N ha-1yr-1 in all three treatments. Cover-crop aboveground biomass increased annually in 2021, 2022 and 2023 from ~400 g, to ~692 g, to ~925 g dry biomass m-2yr-1 providing annual agroecosystem surface carbon accumulation of ~1.78 t C, ~3.08 t C and ~4.11 t C ha-1. Earthworm populations increased from zero earthworms m-2 in 2019 to ~100 earthworms m-2 in 2023. BEAM protocols also promoted: (a) farm input reductions of: 100% for herbicide, 56% for insecticide, 61% for diesel fuel, 85% for synthetic nitrogen fertilizer, and 100% for phosphorus fertilizer applications, reducing farm input costs ~$470 ha-1yr-1. Adoption of a BEAM regenerative agricultural management system, increased: (a) SOC (~6.59 t C ha-1yr-1); (b) C in the annual growth of cover-crop biomass (~4.12 t of C ha-1yr-1); (c) carbon in residual surface cover-crop plant residues from previous annual cover crops (~0.82 t C ha-1yr-1); and (d) C exported in cotton lint (~0.77 t C ha-1yr-1). Total C avoidance included: (a) reductions in fertilizer, pesticides and diesel inputs (~0.33 t C ha-1yr-1); and (b) reduction of C respiration from adoption of zero-till (~0.64 t C ha-1yr-1). Adoption of BEAM management, in this cotton/cover-crop agroecosystem, provided productive utilization, or avoidance of ~13.27 t of atmospheric C ha-1yr-1.

Suppression potential of selected vermicomposts against root-knot nematode (Meloidogyne incognita) under in vitro, pot, and field conditions

The root-knot nematode Meloidogyne incognita presents a serious threat to high-value crops in tropical and subtropical regions, particularly in Ethiopia, causing substantial yield and quality losses. Vermicompost, whether applied in solid form or as an extract, has shown promise in managing root-knot nematodes (RKNs). However, its effectiveness is influenced by factors such as the quality and type of vermicompost, the application rate, and the composition of parasitic nematode communities in the soil. This study utilized selected vermicomposts at varying rates in in vitro, pot, and field experiments to evaluate their potential for suppressing M. incognita and their effects on the growth and yield of tomato and hot pepper. The in vitro experiments demonstrated that all vermicompost extracts exhibited toxicity to J2. In particular, VC10 and VC11 showed higher efficacy, resulting in 55% and 78% mortality of J2 after 24 and 72 h of exposure, respectively, compared to the control and VC12. The interaction between vermicompost type, application rate, and nematode density significantly influenced tomato growth and nematode parameters in the pot experiment. The application of VC10 and VC11 at high doses (10 and 20 t ha-1) and low nematode density (50 J2) increased root fresh weight while reducing galls and nematode populations in tomato roots. Conversely, VC12 at a high application rate (20 t ha-1) and high nematode density (500 J2) led to an increase in root galls and nematode populations, suggesting a preference for RKNs rather than the expected nematicidal effect. The study indicates that the suppressive effect of vermicompost on nematodes varies with nematode density, depending on the type and amount of vermicompost used. Field experiments revealed that vermicompost amendments not only suppressed posttreatment nematode populations but also significantly improved hot pepper yield. Particularly, VC10 applied at high rates (10 and 20 t ha-1) resulted in lower nematode densities and higher marketable fruit yield compared to other vermicompost treatments and the conventional treatments (control, farmer practice, and recommended fertilizer). This highlights the long-term benefits of vermicompost application for nematode management and soil health. In addition, vermicompost amendments improved soil chemical properties. Overall, vermicompost offers greater benefits than farmers' practices and high-cost chemical fertilizers for soil improvement, while also enhancing tomato and hot pepper yields in nematode-infested smallholder farms.

Combined application of vermicompost and mineral K fertilizer improves root yield of sweet potato [Ipomoea batatas (L.) Lam] in Southern Ethiopia

The high cost of mineral fertilizers, lack of credit, and delivery delays constrain crop production in the developing world like Ethiopia. Farmers apply little or no fertilizer to sweet potatoes leading to lower root yield (8 t ha-1) compared with 60 t ha-1 in research fields. Eventually, this has led to a decline in food security. Although the rate depends on many factors, organic inputs such as vermicomposts are suggested as alternatives or combined with mineral fertilizers. This research was therefore initiated to investigate the effect of the combined application of vermicompost (VC) and mineral K fertilizer on the root yield of sweet potatoes. Treatments were 0, 4, 8, or 12 t ha-1 VC and 0, 50, 100, or 150 kg ha-1 K laid out in a Randomized Complete Block Design, factorial arrangement with three replications. The combined application of 12 t VC ha-1 with 150 kg K ha-1 produced the highest total root yield (57.35 t ha-1), marketable root yield (46.45 t ha-1), and harvest index (16.5 %). These values were comparable to those of 8 t VC ha-1 and 150 kg K ha-1. Dry matter content was increased by 35.5 % in location-1 and 38.2 % in location-2 at combined rates of 12 t VC ha-1 and 150 kg K ha-1 that did not differ from 8 t VC ha-1 and 150 kg K ha-1. Root diameter, dry matter content, harvest index, marketable, and total root yield had a strong positive relationship. Applying 8 t VC ha-1 with 150 kg K can improve root yield aboveground biomass of sweet potato.

Hyperthermophilic composting coupled with vermicomposting stimulates transformation of organic matter by altering bacterial community

Hyperthermophilic composting (HTC) has been proven to be an effective strategy to recycle organic wastes, while vermicomposting (VC) has been widely applied to produce humic fertilizer. The combination of HTC with VC (HVC) is expected to integrate the advantages of both. This study showed that HTC pre-fermentation provided plentiful substances such as dissolved organic matter (DOM) for the subsequent VC enriching humic acid (HA). Compared to thermophilic composting (TC), HVC significantly stimulated the degradation of organic matter (OM) and the production of N-rich HA, and incubated higher diversity of bacterial community. SHapley Additive exPlanations (SHAP), correlation network, Mantel test and PLS-LM model were constructed to identify the potential roles of the key bacterial groups contributing to OM transformation. Firmicutes (e.g., Bacillus and Tuberibacillus) dominant in HTC may mineralize and mobilize OM, providing affluent bioavailable nutrients as part of DOM for microbial metabolism and abundant precursors for HA formation in the further VC. Actinobacteriota (e.g., Microbacterium) and Bacteroidota (e.g., Flavobacterium and Parapedobacter) prominent in VC metabolized DOM, mineralized OM and produced HA probably by enhancing the metabolic activity involved in OM degradation and amino acid generation. However, when DOM was exhausted, some members especially Proteobacteria (e.g., Ochrobactrum, Devosia and Cellvibrio) would change their roles from promoter to inhibitor of mineralization and humification. Altering the nutrient bioavailability and the composition of bacterial community can regulate the mineralization, mobilization and humification of OM. Overall, this study provides new insights into the roles of bacteria participating in transforming organic wastes into HA-rich composts.

Bacterial necromass as the main source of organic matter in saline soils

Soil salinity poses a major threat to crop growth, microbial activity, and organic matter accumulation in agroecosystems in arid and semiarid regions. The limitations of carbon (C) accrual due to salinity can be partly mitigated by the application of organic fertilizers. Although microorganisms are crucial for soil organic carbon (SOC) stabilization, the relationships between living and dead microbial C pools and the community features of SOC accrual in saline soils are not known. A two-year field experiment was conducted to examine the effects of organic fertilizers on the microbial regulatory mechanisms of C sequestration in saline soil (chloride-sulfate salinity). Compared to manure addition alone, manure plus commercial humic acid increased SOC stock by 11% and decreased CO2 emissions by 10%, consequently facilitated soil C sequestration. We explain these results by greater bacterial necromass formation due to the dominance of r-strategists with faster turnover rate (growth and death), as well as larger necromass stability as supported by the increased aggregate stability under the addition of humic acids with manure. Humic acids increased the abundance of bacterial phylum Proteobacteria (copiotrophs) and decreased Acidobacteria (oligotrophs) compared with straw, indicating that r-strategists outcompeted K-strategists, leading to bacterial necromass accumulation. With larger C/N ratio (88), straw increased leucine aminopeptidase to mine N-rich substrates (i.e., from necromass and soil organic matter) and consequently reduced SOC stock by 8%. The decreased salinity and increased organic C availability under straw with manure addition also led to a 13% higher CO2 flux compared with manure application alone. Thus, humic acids added with manure benefited to SOC accumulation by raising bacterial necromass C and reducing CO2 emissions.

Effect of Organic and Chemical Fertilizer on the Diversity of Rhizosphere and Leaf Microbial Composition in Sunflower Plant

Applying organic manure to crops positively impacts the soil microbial community which is negatively impacted when chemical fertilizers are used. Organic manures also add new microbes to the soil in addition to influencing the growth of native ones. Metagenomic analysis of different organic manures, soil, and pot culture experiments conducted under various fertilizer conditions constitute the primary methodologies employed in this study. We compared the effect of two organic manure combinations and an inorganic fertilizer combination on microbial community of rhizosphere soil and leaves of sunflower plants. Metagenomic sequencing data analysis revealed that the diversity of bacteria and fungi is higher in organic manure than in chemical fertilizers. Each organic manure combination selectively increased population of some specific microbes and supported new microbes. Application of chemical fertilizer hurts many plant beneficial fungi and bacteria. In summary, our study points out the superiority of organic manure combinations in enhancing microbial diversity and supporting beneficial microbes. These findings enhance the profound influence of fertilizer types on sunflower microbial communities, shedding light on the intricate dynamics within the rhizosphere and leaf microbiome. Bacterial genera such as Bacillus, Serratia, Sphingomonas, Pseudomonas, Methylobacterium, Acinetobacter, Stenotrophomonas, and fungal genera such as Wallemia, Aspergillus, Cladosporium, and Penicillium constitute the key microbes of sunflower plants.

Effects of humic acid fertilizer on the growth and microbial network stability of Panax notoginseng from the forest understorey

Humic acid (HA) can substantially enhance plant growth and improve soil health. Currently, the impacts of HA concentrations variation on the development and soil quality of Panax notoginseng (Sanqi) from the forest understorey are still unclear. In this study, exogenous HA was administered to the roots of Sanqi at varying concentrations (2, 4, and 6 ml/L). Subsequently, the diversity and community structure of bacteria and fungi were assessed through high-throughput sequencing technology. The investigation further involved analyzing the interplay among the growth of sanqi, soil edaphic factors, and the microbial network stability. Our finding revealed that moderate concentrations (4 ml/L) of HA improved the fresh/dry weight of Sanqi and NO3--N levels. Compared with control, the moderate concentrations of HA had a notable impact on the bacterial and fungal communities compositions. However, there was no significant difference in the α and β diversity of bacteria and fungi. Moreover, the abundance of beneficial bacteria (Bradyrhizobium) and harmful bacteria (Xanthobacteraceae) increased and decreased at 4 ml/L HA, respectively, while the bacterial and fungal network stability were enhanced. Structural equation model (SEM) revealed that the fresh weight of Sanqi and bacterial and fungal communities were the factors that directly affected the microbial network stability at moderate concentrations of HA. In conclusion, 4 ml/L of HA is beneficial for promoting Sanqi growth and soil quality. Our study provides a reference for increasing the yield of Sanqi and sustainable development of the Sanqi-pine agroforestry system.

Vermi-remediation impacts on growth and metals bioaccumulation in tomato irrigated with wastewater

Due to their persistence in the environment, and their highly toxic and bioaccumulative nature, heavy metals are well known to the environment. Vermicompost has gained popularity because it improves soil properties and, most importantly, remediates and immobilizes heavy metals. The present study assessed vermicompost effects on heavy metal bioaccumulation in tomato plants irrigated with wastewater. A plastic bag experiment was carried out with 5 kg of growing media in each bag. Growing media contain garden soil with four levels of vermicompost mixed at 0%, 5%, 15%, and 25%. The pots were irrigated with wastewater from different industries and tap water, which was taken as control. Wastewater was collected from the pharmaceutical industry, plastic industry, and sewage water of Hayatabad Industrial Estate, Peshawar. Vermicompost application significantly affected all tomatoes' growth attributes and heavy metals concentration. Results revealed that minimum Cd (2.48 mg kg-1), Cr (1.27 mg kg-1), Cu (4.10 mg kg-1), and Pb (0.62 mg kg-1) concentrations were recorded in tomatoes cultivated in 25 % vermicompost amended soil, while, maximum Cd (5.23 mg kg-1), Cr (2.29 mg kg-1), Cu (8.84 mg kg-1) and Pb (2.18 mg kg-1) concentrations were reported in sewage water irrigated plants., Overall, vermicompost applied at 25% significantly enhanced plant growth and yield, reducing the bioavailability and bioaccumulation of heavy metals. From the finding of this study, it is observed that wastewater irrigation of plants should be avoided because of the high level of heavy metals; in contrast, the application of vermicompost is highly recommended as compost reduces heavy metals bioaccumulation and enhances productivity.

Assessment of microbial flora and pesticidal effect of vermicast generated from Azadirachta indica (neem) for developing a biofertilizer-cum-pesticide as a single package

The soil comprising organic matter, nutrients, serve as substrate for plant growth and various organisms. In areas where there are large plantations, there is a huge leaf litter fall. The leaf litter upon decomposition releases nutrients and helps in nutrient recycling, for which the soil engineers such as earthworms, ants and termites are important key players. In this context, the present study was conducted to assess the characteristics of the vermicast obtained by vermicomposting neem leaf litter in terms of microbial flora, plant growth promoting properties and antagonistic activities of the vermicast against phytopathogens. Vermicomposting of neem leaf litter was done using two epigeic earthworm species Eisenia fetida and Eudrilus eugeniae. The vermicast exhibited antagonistic potential against plant pathogens. Out of the four vermiwash infusions studied, the 75 % formulation reduced the disease incidence against mealybug by 82 % in the tree Neolamarkia cadamba. The result of the study suggests that vermicast made from neem leaf litter may be a potent combination of a biofertilizer and a pesticide.

An insight on the plausible biological and non-biological detoxification of heavy metals in tannery waste: A comprehensive review

A key challenge for the tannery industries is the volume of tannery waste water (TWW) generated during the processing of leather, releasing various forms of toxic heavy metals resulting in uncontrolled discharge of tannery waste (TW) into the environment leading to pollution. The pollutants in TW includes heavy metals such as chromium (Cr), cadmium (Cd), lead (Pb) etc, when discharged above the permissible limit causes ill effects on humans. Therefore, several researchers have reported the application of biological and non-biological methods for the removal of pollutants in TW. This review provides insights on the global scenario of tannery industries and the harmful effects of heavy metal generated by tannery industry on micro and macroorganisms of the various ecological niches. It also provides information on the process, advantages and disadvantages of non-biological methods such as electrochemical oxidation, advanced oxidation processes, photon assisted catalytic remediation, adsorption and membrane technology. The various biological methods emphasised includes strategies such as constructed wetland, vermitechnology, phytoremediation, bioaugmentation, quorum sensing and biofilm in the remediation of heavy metals from tannery wastewater (TWW) with special emphasize on chromium.

Dual-Purpose Vermicompost for the Growth Promotion and Suppression of Damping-Off Disease on Potted Vegetable Soybean

Vermicompost is applied as a soil amendment to promote plant growth and yield. It also helps to significantly reduce the incidence of soil-borne diseases. However, its efficiency depends on the type of earthworm from which it is formed. The current study aims to compare the effects of two vermicompost types derived from African nightcrawler (AF) and Tiger worm (TG) as a soil amendment to evaluate its potential for suppressing damping-off disease both in vitro and in vivo. It also aims to determine the effects of both vermicompost types on the growth and yield-related traits of potted Thai vegetable soybean [Glycine max (L.) Merrill] variety "Chiang Mai 84-2" grown under greenhouse conditions when amended to the soil at various application rates (1%, 2%, 3% w/w). AF vermicompost exhibited better suppression of damping-off disease than TG vermicompost in vitro and under greenhouse conditions. AF vermicompost performed significantly greater suppressive efficacy on the mycelial growth of Athelia rolfsii in vitro than TG vermicompost, indicated by 50% and 16% inhibition, respectively. Damping-off incidence on vegetable soybean seedlings grown in soil amended with AF vermicompost was significantly lower (21%) than in soil amended with TG vermicompost (32%) under greenhouse conditions. With an increased application rate of 1% to 2% or 3% for each vermicompost type, plant yields significantly enhanced, with no significant variations among the 2% and 3% rates. Applying vermicompost at 2% w/w through soil amendment was the appropriate rate for promoting the growth and yield of potted vegetable soybeans. The results can be used to guide the application of vermicompost to control soil-borne plant diseases, promote plant growth, and enhance yields, especially in terms of organic crop production. Further research is needed to evaluate its potential for other potted crops and protect against soil-borne diseases.

Anaerobic Soil Disinfestation and Vermicompost to Manage Bottom Rot in Organic Lettuce

Rhizoctonia solani Kühn (teleomorph: Thanatephorus cucumeris [Frank] Donk) is an aggressive soilborne pathogen with a wide host range that survives saprophytically between crops, presenting a challenge for organic vegetable farmers who lack effective management tools. A 2-year field experiment was conducted at two organic farms to compare anaerobic soil disinfestation (ASD) and worm-cured compost (vermicompost) to manage bottom rot caused by R. solani subspecies AG1-IB in field-grown organic lettuce (Lactuca sativa). At each farm, four replicate plots of seven treatments were arranged in a randomized complete block design. Randomization was restricted by grouping treatments to evaluate ASD, and treatments to evaluate vermicompost in starter plugs. ASD experiment treatments were three different ASD carbon sources that are commonly used and widely available to local farmers in Vermont: compost, cover crop residues, and poultry manure fertilizer, as well as a tarped control. Vermicompost experimental treatments were vermicompost compared with two types of controls: a commercial biocontrol product (RootShield PLUS + G), and unamended (untarped control). This study demonstrated that the ASD method is achievable in a field setting on Vermont farms. However, neither ASD nor vermicompost produced significant disease suppression or resulted in higher marketable yields than standard growing practices. Given the laborious nature of ASD, it is likely more appropriate in a greenhouse setting with high-value crops that could especially benefit from being grown in plastic tarped beds (e.g., tomatoes and strawberries). This study is the first known attempt of field-implemented ASD for soil pathogen control in the northeastern United States.

Biochar pH reduction using elemental sulfur and biological activation using compost or vermicompost

This study aimed to improve biochar's quality for arid land applications by using elemental sulfur as a pH reducer agent co-applied with compost or vermicompost as biological activators. Biochar pH was decreased by the addition of elemental sulfur, with the highest reduction from 8.1 to 7.2 occurring when co-amended with vermicompost. Elemental sulfur increased the water-soluble concentrations of calcium, magnesium, and many other elements, and stimulated substrate-induced respiration, especially when co-amended with vermicompost. The bacterial diversity community structure were significantly affected by all treatments. The Shannon index significantly increased in response to compost and sulfur treatments, while the vermicompost treatments showed higher microbial evenness and equitability diversity indices. Multivariate analyses indicated that elemental sulfur oxidation was associated with specific sulfur-oxidizing bacterial clusters. Integrating biochar with sulfur and (vermi)compost was found to be a promising sustainable technology for managing excessive biochar alkalinity, increasing its fertility and potential for application in aridlands.

Responses of soil nutrients and rhizosphere microbial communities of a medicinal plant Pinelliaternata to vermicompost

Vermicomposting is an important strategy for restoring soil function and fertility. However, information on the effects of vermicompost application in intensive Pinellia ternata planting systems has rarely been reported. Here, we focus on the effects of different vermicompost levels and chemical fertilizer (CF) strategies on soil chemical properties, soil enzymes, and soil rhizosphere microbial communities (bacteria and fungi) in a field experiment. Compared to no added fertilizers (CK), vermicompost was more effective than the CF treatment in increasing P. ternata yield. We found that the 5 t ha-1 vermicompost treatment (VC2) significantly increased the tuber yield by 44.43% and 6.55% compared to the CK and CF treatment, respectively, and water-soluble exudates by 6.56% and 9.63% (P < 0.05). The vermicompost and CF treatments significantly increased the total phosphorus (TP), urease (Ure), and soil catalase (Cat) contents (P < 0.05). Compared to the vermicompost and CK treatments, the CF treatment significantly decreased soil organic carbon (SOC), C/N ratio, and soil acid phosphatase (Pac) (P < 0.05). Redundancy analysis (RDA) showed that Ure and total potassium (TK) were the major drivers in the bacterial community, whereas TP, total nitrogen (TN), Pac, and TK were the major drivers in the fungal community. We also found a positive correlation between soil enzyme activities, including between Ure and bacterial genera (Clostridium, Pseudoclavibacter, Stella, Hyphomicrobium, Mesorhizobium, and Adlercreutzia). In summary, vermicompost application promotes P. ternata soil microecosystems and improves soil fertility, soil enzyme activities, and rhizosphere microbial structure and function. Vermicomposting is a novel and promising approach to sustainable ecological cultivation of Chinese herbs via the promotion of soil properties and beneficial organisms.

Molecular characterization of vermicompost-derived IAA-releasing bacterial isolates and assessment of their impact on the root improvement of banana during primary hardening

The hardening step of micropropagation is crucial to make the in vitro raised plants mature and further enhancing their survivability in the external environment. Auxin regulates various root physiological parameters in plant systems. Therefore, the present study aimed to assess the impact of three vermicompost-derived IAA-releasing microbial strains, designated S1, S2, and S3, as biofertilizers on in vitro raised banana plantlets during primary hardening. The High-Performance Thin-Layer Chromatography (HPTLC) analysis of these strains revealed a higher IAA content for S1 and S2 than that of S3 after 144 h of incubation. In total, seven different treatments were applied to banana plantlets, and significant variations were observed in all plant growth parameters for all treatments except autoclaved cocopeat (100%) mixed with autoclaved vermicompost (100%) at a 1:1 ratio. Among these treatments, the application of S3 biofertilizer: autoclaved cocopeat (1:1), followed by S2 biofertlizer: autoclaved cocopeat (1:1), was found to be better than other treatments for root numbers per plant, root length per plant, root volume, and chlorophyll content. These findings have confirmed the beneficial effects of microbial strains on plant systems and propose a link between root improvement and bacterial auxin. Further, these strains were identified at the molecular level as Bacillus sp. As per our knowledge, this is the first report of Bacillus strains isolated from vermicompost and applied as biofertilizer along with cocopeat for the primary hardening of banana. This unique approach may be adopted to improve the quality of plants during hardening, which increases their survival under abiotic stresses.

Composting and vermicomposting of sewage sludge at various C/N ratios: Technological feasibility and end-product quality

Even though sewage sludge (SS) contains a high level of pollutants, it is rich in essential plant nutrients and has the potential to enhance soil fertility. However, the SS must be further treated through pre-composting plus vermicomposting to make it safe for use on food crops. More research and data are needed to determine how different carbon-to-nitrogen ratios (C/N) affect the feasibility and quality of composting vs vermicomposting of SS. Therefore, in this study we comprehensively evaluated the feasibility and end-product quality of compost and vermicompost produced from SS under different C/N ratios. SS was mixed with pelletized wheat straw (PWS) at various proportions to produce C/N ratios of 6:1, 18:1, 28:1, and 38:1, then pre-composted for 14 days followed by vermicomposting using the earthworm Eisenia andrei for 120 days. Agrochemical properties were measured at 0, 30, 60, 90, and 120 days. Results revealed significantly higher levels of agrochemicals in vermicompost compared to compost, including total potassium (37-88%) and magnesium (4.3-12%), nitrate nitrogen (71-98%), available potassium (53-88%), available phosphorus (79%), available magnesium (54-453%), available boron (48-303%), and available copper (2.5-82%). However, lower levels of ammonium nitrogen by (59-85%), available iron (2.3-51.3%), available manganese (29.7-52.2%), available zinc (10.5-29.8%), total carbon (0.75-4.5%), and total nitrogen (1.6-22.2%) were measured. Comparison of the various C/N ratios, showed that vermicompost with an 18:1 C/N ratio outperformed compost and demonstrated the highest earthworm population (165 pieces/kg). Thus, vermicomposting SS at an 18:1 C/N ratio is strongly recommended as a sustainable technology for producing high-quality vermicompost from SS.

Effective combination of arugula vermicompost, chitin and inhibitory bacteria for suppression of the root-knot nematode Meloidogyne javanica and explanation of their beneficial properties based on microbial analysis

Root-knot nematodes (Meloidogyne spp.) are dangerous parasites of many crops worldwide. The threat of chemical nematicides has led to increasing interest in studying the inhibitory effects of organic amendments and bacteria on plant-parasitic nematodes, but their combination has been less studied. One laboratory and four glasshouse experiments were conducted to study the effect on M. javanica of animal manure, common vermicompost, shrimp shells, chitosan, compost and vermicompost from castor bean, chinaberry and arugula, and the combination of arugula vermicompost with some bacteria, isolated from vermicompost or earthworms. The extract of arugula compost and vermicompost, common vermicompost and composts from castor bean and chinaberry reduced nematode egg hatch by 12-32% and caused 13-40% mortality of second-stage juveniles in vitro. Soil amendments with the combination vermicompost of arugula + Pseudomonas. resinovorans + Sphingobacterium daejeonense + chitosan significantly increased the yield of infected tomato plants and reduced nematode reproduction factor by 63.1-76.6%. Comparison of chemical properties showed that arugula vermicompost had lower pH, EC, and C/N ratio than arugula compost. Metagenomics analysis showed that Bacillus, Geodermatophilus, Thermomonas, Lewinella, Pseudolabrys and Erythrobacter were the major bacterial genera in the vermicompost of arugula. Metagenomics analysis confirmed the presence of chitinolytic, detoxifying and PGPR bacteria in the vermicompost of arugula. The combination of arugula vermicompost + chitosan + P. resinovorans + S. daejeonense could be an environmentally friendly approach to control M. javanica.

Potential of vermicomposting with mixtures of animal manure and vegetable leaves in the development of Eisenia foetida, microbial biomass, and enzymatic activity under semi-arid conditions

Vermicomposting is the bio-oxidation and stabilization of organic matter involving relationships between the action of earthworms and microorganisms and the activation and dynamics of several enzyme activities. Semi-arid farmers to make (extra) money and organic production, produce their vermicompost using plant residues and animal manure, but there is no information about the final product generated. Thus, this study aimed to analyze the potential of vermicomposting with mixtures of animal manure and vegetable leaves in the development of Eisenia foetida, microbial biomass, and enzymatic activity in the semi-arid region, Brazil. The experimental design applied was randomized block in a 6 × 4 factorial scheme with four replicates, with six treatments (mixtures of cattle manure, goat manure, cashew leaves, and catanduva leaves) and evaluated at four-time intervals (30, 60, 90, and 120 days of vermicomposting). The treatments were placed in polyethylene pots in the same site, environmental conditions, and residues proportions as used by farmers. The characteristics analyzed were the number of earthworms (NE), total earthworm biomass (TEB) and earthworm multiplication index (MI), microbial biomass carbon (MBC), and activities of enzymes β-glucosidase, dehydrogenase, alkaline and acid phosphatases. The cattle manure vermicomposted shows the highest average values observed for NE, MI, TEB, MBC, and enzymatic activity, regardless of the plant leaves mix. In general, the enzymes activities were found in the descending order of β-glucosidase > alkaline phosphatase > dehydrogenase > acid phosphatase. The maturation dynamics of vermicompost were characterized by a decline in the microbial population and number and biomass of earthworms in the substrate and consequently a decrease in new enzyme synthesis and degradation of the remaining enzyme pool. Microbial biomass and enzymatic activity were indicators for changes in the quality of vermicompost.

Exploring eco-friendly approaches for mitigating pharmaceutical and personal care products in aquatic ecosystems: A sustainability assessment

Global water scarcity is exacerbated by climate change, population growth, and water pollution. Over half of the world's population will be affected by water shortages for at least a month annually by 2050 due toa lack of clean water sources. Even though recycling wastewater helps meet the growing demand, new pollutants, including pharmaceuticals and personal care products (PPCPs), pose a health threat since conventional methods cannot remove them and their environmental monitoring regulations are yet in place. Therefore, the current review aims to investigate and propose eco-friendly technologies for removing PPCPs from wastewater and their implementation strategies for ecosystem safety. Findings indicated the absence of a single wastewater treatment technology that can remove all PPCPs in a single operation. Instead, biotechnological methods are one of the alternatives that can remove PPCPs from aquatic environments. In this context, community involvement and knowledge transfer are identified keys to clean water resources' long-term sustainability.

Problems associated with vermicomposting of dog excrement in practice using Eisenia andrei

One 25-kg dog produces about 500 g of excrement per day. Excrement is a potentially hazardous material, as it may contain pathogenic microorganisms. Our samples were tested for the presence of thermotolerant coliform bacteria, Enterococcus spp., Escherichia coli and Salmonella spp., which are indicators of faecal contamination, as well as for the presence of helminths and their eggs. During the experiment, it was observed whether these microorganisms could be eliminated by vermicomposting. There were two variants of vermicomposting piles: one test pile (with continuous feeding) and one control pile (with a single feeding). The vermicomposting process was run in outdoor conditions in park for 51 weeks using Eisenia andrei earthworms. The vermicomposting of dog excrement with waste from park maintenance (1:2) can produce a good quality fertiliser. During the process of vermicomposting, there was a gradual decrease in the content of pathogenic bacteria. At the end of the vermicomposting process, there were no eggs or adult helminths. The vermicompost was very rich in microorganisms and enzymatic activity. The pH value was slightly alkaline, and the C:N ratio corresponded to value of mature vermicompost.

Multifarious Plant Probiotic Features of Bacillus sp. W11 Isolated from Vermicast and Its Promises for Biocontrol Activity Against Phytopathogens

Organic agricultural practice using vermisources is considered as one of the common sustainable strategies in agriculture. Apart from their nutrient content, beneficial microbes associated with natural vermicast serve as an efficient bioinoculant for improving agricultural productivity. Hence, studies on the identification of suitable microbial inoculants with multi-trait plant beneficial properties from these hotspots are highly promising as an ecofriendly substitute against harmful chemical fertilizers. The current study has been designed to isolate bacterial strains with various plant probiotic and biocontrol properties against various fungal phytopathogens. Among the various bacteria obtained in the study, the isolate W11 was found to have remarkable inhibitory activity against a broad range of phytopathogens like Fusarium oxysporum, Pythium myriotylum, and Rhizoctonia solani, in addition to its multiple plant growth-promoting properties. The W11 was further identified as Bacillus sp. by 16S rDNA sequence-based analysis. The W11 treatment was also found to enhance the plant growth parameters of Vigna unguiculata. In addition, the priming of Bacillus sp. W11 on potato tuber has confirmed to protect it from Fusarium wilt caused by Fusarium oxysporum. This highlights the possible protective effect of W11 during the post-harvest storage of potatoes. Also, the metabolite analysis of W11 extract by LC-QTOF-MS/MS analysis has revealed the presence of lipopeptide surfactin derivatives with m/z of 1008, 1022, and 1036 (M + H)⁺. All the results obtained in the study thus indicate the remarkable agricultural promises of Bacillus sp. W11 isolated from vermicast. Even though vermicast has been studied for its beneficial agricultural applications, the isolation of plant beneficial bacteria from it and detailed characterization of its beneficial effects make the study important.

Effects of Arugula Vermicompost on the Root-Knot Nematode (Meloidogyne javanica) and the Promotion of Resistance Genes in Tomato Plants

Root-knot nematodes are the most important plantparasitic nematodes worldwide. Many efforts have been made to find non-chemical, risk-free, and environmentally friendly methods for nematode control. In this study, the effects of compost and vermicompost of arugula (Eruca sativa) on Meloidogyne javanica were investigated in three glasshouse experiments. In addition, the expression of the defense-related genes nonexpressor of pathogenesis-related 1 (NPR1) and lipoxygenase 1 (LOX1) was detected in tomato plants treated with vermicompost of arugula at 0, 2, 7, and 14 days after nematode inoculation. The result showed that the vermicompost of arugula significantly reduced the reproduction factor of the nematode by 54.4% to 70.5% in the three experiments and increased the dry weight of shoots of infected tomato plants. Gene expression analysis showed that LOX1 expression increased on the second and seventh day after nematode inoculation, while NPR1 expression decreased. The vermicompost of arugula showed stronger nematode inhibitory potential than the vermicompost of animal manure. The vermicompost of arugula is superior to arugula compost in suppressing the activity of M. javaniva and reducing its impact. It manipulates the expression of resistance genes and could induce systemic resistance against rootknot nematodes.

Integrated Fertilization with Bagasse Vermicompost Changes the Microbiome of Mencía Must and Wine

Winemaking is a well-known process that includes several steps in the production of grape must and wine. Grape marc, or bagasse, is a byproduct of wine production that can be vermicomposted and used as organic fertilizer. Grape marc vermicompost has microbial communities that are richer and more stable than grape marc alone, and its addition to a vineyard’s terroir can improve grape yields and wine quality. Here we compare the must and wine microbiota of Mencía from grapevines treated with and without (standard fertilization) vermicompost derived from Mencía grape marc. Mencía is a high-quality red wine broadly grown in Galicia, Spain, and is appreciated for its fresh acidity and fruity flavors. When Mencía grapevines are treated with vermicompost derived from its grape marc, Mencía vines increase their grape production, and the final wine improves its organoleptic properties. Metataxonomic analyses of the bacterial 16S rRNA and fungal ITS gene regions showed that Mencía must and wine have the distinct taxonomic composition (phyla, genera and ASVs—amplicon sequence variants) of bacterial and fungal groups. Must and wine bacteriotas and mycobiotas show no significant variation in alpha-diversity, while wine bacteriotas and mycobiotas show significant differences in microbial structure (beta-diversity) between treated and control grapevines. Likewise, the functional diversity and predicted metabolic pathways (biosynthesis, degradation/utilization/assimilation, generation of precursor metabolites and energy, macromolecule modification and superpathways) of the must and wine microbiota also show significant changes. Our study proposes that changes in the abundance of microbial taxa and the metabolic processes they undergo during winemaking may improve Mencía’s organoleptic properties and productivity.

Molecular characterization of plant growth-promoting vermi-bacteria associated with Eisenia fetida gastrointestinal tract

Earthworms are highly productive invertebrates and play a vital role in organic farming and improving soil structure and function. The gastrointestinal tract of earthworms possessed agricultural important bacteria. So, the current research aimed was to examine, screen, and identify the plant growth promoting bacteria existing in the digestive tract of Eisenia fetida called plant growth promoting vermi-bacteria. The plant growth promoting traits such as siderophore, phytohormone, and hydrolytic enzymes production, and phosphate solubiliation were assessed. Eleven vermi-bacteria i.e. Bacillus mycoides, B. aryabhattai, B. megaterium, Staphylococcus hominis, B. subtilis, B. spizizenii, B. licheniformis, B. mojavensis, B. toyonensis, B. anthracis, B. cereus, B. thuringiensis, and B. paranthracis were isolated and identified based on microscopic studies, biochemical tests, ribotyping, and agricultural traits. All vermi-bacteria are Gram-positive rods except Staphylococcus hominis and produce different compounds such as siderophore, indole acetic acid, catalase, oxidase, proteases, amylases, and lipases. All vermi-bacteria also act as phosphate solubilizers. Therefore, all isolated vermi-bacteria could be used as potential microbial biofertilizers to enhance crops production in Pakistan.

Deciphering waste bound nitrogen by employing psychrophillic Aporrectodea caliginosa and priming of coprolites by associated heterotrophic nitrifiers under high altitude Himalayas

Himalayan ecosystem is characterized by its fragile climate with rich repositories of biodiversity. Waste collection and disposal are becoming increasingly difficult due to topographical variations. Aporrectodea caligenosa, a versatile psychrophillic soil dweller, is a useful biocatalyst with potent bio-augmented capability for waste treatment at low temperatures. Microcosm experiments were conducted to elucidate the comprehensive nature of biogenic nitrogen transformation to NH₄⁺ and NO₃⁻ produced by coupling of earthworm-microbes. Higher biogenic recovery of NH₄⁺-N from coprolites of garden soil (47.73 ± 1.16%) and Himalayan goat manure (86.32 ± 0.92%) with an increment of 14.12 and 47.21% respectively over their respective control (without earthworms) with a linear decline beyond 4th week of incubation was reported. NO₃^–-N recovery progressively sustained in garden soil and goat manure coprolites during entire incubation with highest 81.81 ± 0.45 and 87.20 ± 1.08 µg-N g⁻¹dry weight recorded in 6th and 5th week of incubation respectively and peak increments as 38.58 and 53.71% relative to respective control (without earthworms). Declined NH₄⁺–N in coprolites at low temperature (15.0 ± 2.0 °C) evidenced increased nitrification rates by taking over the process by abundant nitrifying microbes. Steady de-nitrification with progressive incubation on an average was 16.95 ± 0.46 ng-N g⁻¹ per week and 21.08 ± 0.87 ng-N g⁻¹ per week compared to 14.03 ± 0.58 ng-N g⁻¹ per week and 4.50 ± 0.31 ng-N g⁻¹ per week in respective control treatments. Simultaneous heterotrophic nitrification and aerobic denitrification (SHNAD) was found to be a prominent bioprocess at low temperature that resulted in high and stable total nitrogen and nitrate accumulation from garden soil and goat manure with relative recovery efficiency of 11.12%, 14.97% and 14.20%; 19.34%. A. caligenosa shows promising prospects for mass applicability in biogenic N removal from manure of Himalayan goat.

Organic Beet Leaves and Stalk Juice Attenuates the Glutathione Peroxidase Increase Induced by High-Fat Meal in Dyslipidemic Patients: A Pilot Double-Blind, Randomized, Controlled Trial

The beet, including the leaves and stalk (BLS), is a vegetable with great antioxidant potential. The aim of this study was to evaluate the differences in the nutritional composition and the concentration of total phenolics between the organic and conventional BLS and to verify whether the ingestion of an organic BLS juice containing different concentrations of polyphenols modulated some biomarkers of oxidative stress after the ingestion of a high-fat meal in individuals with dyslipidemia. A controlled, randomized, double-blind, crossover clinical trial with a washout period of 1 week was carried out. A 12-h fasting blood sample was collected. Afterward, the participants consumed a high-fat meal, followed by the ingestion of a placebo or one of the organic BLS juices containing either 32.0 or 77.5 mg/100 mL of polyphenols. Blood samples were obtained 30, 60, 120 and 180 min after the first blood collection. The composition analysis showed that organic BLS had a better nutritional composition than conventional ones. The high-fat meal induced postprandial hypertriglyceridemia after 120 min (p < 0.001) and increased the concentration of malondialdehyde after 30 min (p < 0.001). In addition, there was a significant increase in GPx in 30 min (p = 0.026). This increase was attenuated in the group that received the highest dose of polyphenols when compared with the placebo after 30 min (p = 0.045). Therefore, the organic BLS juice containing 77.5 mg of polyphenols was efficient at modulating one of the postprandial mechanisms of enzymatic antioxidant protection in individuals with dyslipidemia.

Exploring the potential of vermicompost as a sustainable strategy in circular economy: improving plants' bioactive properties and boosting agricultural yield and quality

Consumption of natural resources and waste generation continues to rise as the human population increases. Ever since the industrial revolution, consumers have been adopting a linear economy model based on the 'take-make-dispose' approach. Raw materials are extracted to be converted into products and finally discarded as wastes. Consequently, this practice is unsustainable because it causes a massive increase in waste production. The root problems of the linear system can be addressed by transitioning to a circular economy. Circular economy is an economic model in which wastes from one product are recycled and used as resources for other processes. This literature review discovers the potential of vermicompost as a sustainable strategy in circular economy and highlights the benefits of vermicompost in ensuring food security, particularly in improving agricultural yield and quality, as well as boosting crop's nutritional quality. Vermicompost has the potential to be used in a variety of ways in the circular economy, including for agricultural sustainability, managing waste, pollutant remediation, biogas production and animal feed production. The recycling of organic wastes to produce vermicompost can benefit both the consumers and environment, thus paving the way towards a more sustainable agriculture for the future.

Soil microbial community responses to the application of a combined amendment in a historical zinc smelting area

Farmland soils that surround a historical zinc smelting area in northwestern Guizhou, China, are characterized by high levels of heavy metal accumulation. Previous studies have mainly focused on the potential risk evaluations of heavy metals in soil and crops. However, at present, the effects of amendment applications on the bioavailability of heavy metals and on microbial community in the heavily contaminated soils of the mining region are still unclear. A pot experiment was conducted to determine the effect of applying a combined amendment (e.g. lime, sepiolite, and vermicompost) on the diversity and composition of microbial community in the contaminated soil. The results showed that the contents of DTPA- and TCLP-extractable heavy metals (e.g. Cd, Pb, and Zn) decreased and that the pH, SWC, EC, and soil available nutrient (e.g. AN, AP, and AK) contents increased after the application of the combined amendment. Furthermore, application of the combined amendment decreased the diversity of soil bacterial and fungal communities and increased the relative abundances of the dominant bacterial and fungal communities such as Proteobacteria, Bacteroidetes, and Ascomycota; however, the relative abundances of Acidobacteria and Actinobacteria decreased. Redundancy analysis (RDA) and structural equation model (SEM) analysis showed that the bioavailability of heavy metals decreased and that soil physicochemical characteristics improved and had positive or negative effects on the diversity and composition of soil microbial community.

Exploration of microbial communities in the guts and casts of Eudrilus eugeniae, Perionyx excavatus, and Eisenia fetida

Earthworms and their casts have been widely used for organic waste degradation and plant growth promotion. The microbial communities that reside in the guts and casts of earthworms markedly influence both applications. In the present study, next-generation sequencing was applied to identify the microbial communities in the guts and casts of three epigeic earthworm species, Eudrilus eugeniae, Perionyx excavatus, and Eisenia fetida, reared under two different feeding conditions. A total of 580 genera belonging to 43 phyla were identified. By comparing bacterial diversity among samples divided into groups based on the earthworm species, sample types, and conditions, the beta diversity analysis supported the impact of the sample type and suggested that there was significant dissimilarity of the bacterial diversity between the gut and cast. Besides, bacterial Phylum compositions within the group were compared. The result showed that the top three high relative frequency phyla found in the casts were the same regardless of earthworm species, while those found in the gut depended on both the condition and earthworm species. Focusing on the cellulolytic and plant growth-promoting bacteria, certain cellulolytic bacteria, Paenibacillus, Comamonas, and Cytophaga, were found only in the cast. Citrobacter and Streptomyces aculeolatus were detected only in the guts of earthworms reared in the bedding containing vegetables and bedding alone, respectively. Besides, Actinomadura and Burkholderia were detected only in the gut of E. eugeniae and E. fetida, respectively. The results proved that the microbial composition was affected by sample type, condition, and earthworm species. In addition, the proportion of these beneficial bacteria was also influenced by these factors. Hence, the information from this study can be used as a guide for selecting earthworm species or their casts for more efficient organic waste decomposition and plant growth promotion.

Bacterial Succession during Vermicomposting of Silver Wattle (Acacia dealbata Link)

Vermicomposting is the process of organic waste degradation through interactions between earthworms and microbes. A variety of organic wastes can be vermicomposted, producing a nutrient-rich final product that can be used as a soil biofertilizer. Giving the prolific invasive nature of the Australian silver wattle Acacia dealbata Link in Europe, it is important to find alternatives for its sustainable use. However, optimization of vermicomposting needs further comprehension of the fundamental microbial processes. Here, we characterized bacterial succession during the vermicomposting of silver wattle during 56 days using the earthworm species Eisenia andrei. We observed significant differences in α- and β-diversity between fresh silver wattle (day 0) and days 14 and 28, while the bacterial community seemed more stable between days 28 and 56. Accordingly, during the first 28 days, a higher number of taxa experienced significant changes in relative abundance. A microbiome core composed of 10 amplicon sequence variants was identified during the vermicomposting of silver wattle (days 14 to 56). Finally, predicted functional profiles of genes involved in cellulose metabolism, nitrification, and salicylic acid also changed significantly during vermicomposting. This study, hence, provides detailed insights of the bacterial succession occurring during vermicomposting of the silver wattle and the characteristics of its final product as a sustainable plant biofertilizer.

Efficiency and mechanism of a vermicompost additive in enhancing composting of swine manure

Vermicompost was used as an additive in swine manure composting to investigate the expression of bacterial functional genes on nutrients biotransformation. Three treatments with vermicompost compositions of 10%, 20%, and 30% in swine manure were set up. Raw manure was used as the control. The thermophilic period increased to 12 days, the NH₄⁺ -N/NO₃^- -N ratio decreased to 0.85, and the germination index (GI) increased to 166% after vermicompost addition. Furthermore, higher relative abundances of Firmicutes were observed in the substrate during the initial stages of experiment. The abundance of the dominant phylum Proteobacteria and its related pathogenic genera Acinetobacter and Stenotrophomonas decreased in the thermophilic stage while the potentially beneficial genera Actinomadura and Chryseolinea increased. The expression of primary functional genes associated with the metabolism of carbohydrates, amino acids, xenobiotics, and fatty acids was enhanced during the thermophilic phase. Besides, most dominant genera showed strengthened correlations with NO₃^--N and GI, which were the strongest environmental factors for bacterial communities. Network analysis revealed a new metabolic pathway associated with dominant genera Pseudomonas, Acinetobacter, Stenotrophomonas, and Oceanobacter, whose abundance increased with vermicompost addition. Collectively, the results of this study indicate that vermicompost can promote composting efficiency by increasing the potentially beneficial bacteria, decreasing pathogenic bacteria, and enhancing the metabolic capacity of bacterial communities.

Genome sequencing of the vermicompost strain Stenotrophomonas maltophilia UENF-4GII and population structure analysis of the S. maltophilia Sm3 genogroup

The Stenotrophomonas maltophilia complex (Smc) is a cosmopolitan bacterial group that has been proposed an emergent multidrug-resistant pathogen. Taxonomic studies support the genomic heterogeneity of Smc, which comprises genogroups exhibiting a range of phenotypically distinct strains from different sources. Here, we report the genome sequencing and in-depth analysis of S. maltophilia UENF-4GII, isolated from vermicompost. This genome harbors a unique region encoding a penicillin-binding protein (pbpX) that was carried by a transposon, as well as horizontally-transferred genomic islands involved in anti-phage defense via DNA modification, and pili glycosylation. We also analyzed all available Smc genomes to investigate genes associated with resistance and virulence, niche occupation, and population structure. S. maltophilia UENF-4GII belongs to genogroup 3 (Sm3), which comprises three phylogenetic clusters (PC). Pan-GWAS analysis uncovered 471 environment-associated and 791 PC-associated genes, including antimicrobial resistance (e.g. blaL1 and blaR1) and virulence determinants (e.g. treS and katG) that provide insights on the resistance and virulence potential of Sm3 strains. Together, the results presented here provide the grounds for more detailed clinical and ecological investigations of S. maltophilia.

Positive Salt Tolerance Modulation via Vermicompost Regulation of SOS1 Gene Expression and Antioxidant Homeostasis in Viciafaba Plant

Strategic implementation of vermicompost as safe biofertilizer besides defensing saline soils offer dual function solving problems in developing countries. The current study aims to utilize vermicompost (VC) for amelioration of 200mM NaCl in Vicia faba Aspani cultivar and investigate the molecular role of salt overly sensitive pathway (SOS1). The experiment was conducted following a completely randomized design with three replicates. Treatments include 0; 2.5; 5; 10; 15% dried VC intermingled with soil mixture (clay: sand; 1:2) and/or 200 mM NaCl. The results show that salinity stress decreased broad bean fresh and dry weight; and K⁺/Na⁺. However, malonedialdehyde and H₂O₂ contents; increased. Application of 10% VC and salinity stress increases Ca²⁺ (41% and 50%), K⁺/Na⁺ (125% and 89%), Mg²⁺ (25% and 36%), N (8% and 11%), indole acetic acid (70% and 152%) and proteins (9% and 13%) for root and shoot, respectively, in comparison to salt treated pots. Moreover, all examined enzymatic antioxidants and their substrates increased, except glutathione reductase. A parallel decrease in abscisic acid (75% and 29%) and proline (59% and 58%) was also recorded for roots and leaves, respectively. Interestingly, the highly significant increase in gene expression of SOS1 (45-fold) could drive defense machinery of broad bean to counteract 200 mM NaCl.

Differences of Gut Microbiota in the Freshwater Blackworm (Lumbriculus variegatus: Oligochaeta) in Two Different Habitat Conditions

The distribution of organisms is governed by their habitat condition. We analyzed bacterial communities in the gut of the blackworm Lumbriculus variegatus by pyrosequencing of the extracted intestinal metagenomic DNA. Blackworms were collected from two sampling sites with differences in irradiance and riparian vegetation, where site GP7 was covered by riparian vegetation and site GP8 was exposed to sunlight. We obtained the filtered 6414 reads from three samples of each site. At GP7, 271 OTUs were identified, including 32 OTUs unique to the site, whereas at GP8, 238 OTUs were identified, including 22 unique OTUs. Among them, 18 OTUs were shared between both sites. The phylum Proteobacteria was a major component contributing 67.84% and 64.05% of sequences at sites GP7 and GP8, respectively, while each remaining phylum contributed less than 10% at both sites. The two sites differed in microbial community composition and KEGG-indicated biochemical pathways. Community indices such as species richness and Shannon diversity were higher at site GP7 than at GP8. Meanwhile, the abundance of Cyanobacteria was significantly higher at site GP8, while site GP7 showed a greater proportion of genes for membrane transport and carbohydrate metabolism, reflecting differences in food resources.

Using vermiwash to enhance performance of small-scale vermifiltration for swine farm wastewater

Pollution caused by swine wastewater is a growing concern in many countries. In the developing countries, swine wastewater is not properly collected and treated, the wastewater from swine farm pollutes the ecosystem. Especially for small swine farms, they could not afford to have wastewater treatment system. Therefore, farmers need cheap, sustainable technology for future mixed farming. Vermifiltration by earthworm has been introduced to be an answer for enhancing wastewater treatment. Vermiwash is the liquid gathered from vermicomposting that has high microbial activities and nutrients. This study was carried out on a small pilot scale to investigate swine wastewater treatment efficiency of vermifiltration system with and without vermiwash and compared with the geofiltration system. Vermiwash was incubated in vermifiltration and geofiltration systems for 1 week before the treatment. The result showed improved efficiency of vermifiltration incubated with vermiwash in swine wastewater treatment for biological oxygen demand (BOD), chemical oxygen demand (COD) and total suspended solids (TSS) removal, which was highest followed by vermifiltration without incubated vermiwash, geofilter incubated with vermiwash and geofilter, respectively. Good performance of vermifiltration incubated with vermiwash compared with the geofilter treatment was demonstrated for removal of BOD (91.29 ± 9.89%, n = 10), COD (91.42 ± 6.34%, n = 10) and TSS (86.02 ± 10.45%, n = 10). Furthermore, the burrowing activity of the test earthworm (Eisenia fetida) promoted the aeration condition in vermifilter which led to more dissolved oxygen (DO) in effluent (61.28 ± 20.05%, n = 10). Moreover, the amount of copper (Cu) in effluent was decreased compared with influent by up to 88% in all treatment. After 10 weeks of the experiment, the vermicompost that was incubated with vermiwash and produced from earthworm on the top layer was analyzed and showed that nutrients (nitrogen, phosphorus) and soil organic carbon were increased with vermifilter treatment (47.65, 81.61 and 31.79%, respectively) compared with geofilter treatment. In addition, bioavailability of Cu in soil in form of exchangeable Cu was decreased by increasing the bound to organic matter fraction. Transformation of Cu during vermifiltration happened and alleviated the mobility and availability of Cu. Copper in exchangeable form can change into non-toxic form. Therefore, vermifiltration process incubated with vermiwash could reduce the dispersion of copper in swine waste. In conclusion, vermiwash could enhance performance of vermifiltration for swine farm wastewater treatment. The available fraction of copper in vermicompost produced from vermifiltration decreased. Therefore, the farmer could produce vermicompost as the biofertilizer for agricultural production. Using vermifiltration for wastewater treatment in small swine farm could be the eco-solution for nutrient recovery, water resource recycles and minimize pollution.

The Effect of Two Dietary Protein Sources on Water Quality and the Aquatic Microbial Communities in Marron (Cherax cainii) Culture

Feeding freshwater crayfish species with different diets not only affects the water quality but also induces the abundance of various microbial communities in their digestive tracts. In this context, very limited research has been undertaken to understand the impacts of various protein incorporated aqua-diets on the characteristics of water and its microbial communities. In this study, we have critically analysed the water quality parameters including pH, dissolved oxygen, nitrate, nitrite, ammonia and phosphorus, as well as bacterial communities under marron (Cherax cainii) aquaculture, fed fishmeal (FM) and poultry by-product meal (PBM)-based diets for 60 days. The results unveiled that over the time, feeding has significant impacts on organic waste accumulation, especially ammonia, nitrate, nitrite and phosphate, while no effects were observed on pH and dissolved oxygen. Analysis of 16S rRNA sequence data of water sample indicated significant (P < 0.05) shift of microbial abundance in post-fed FM and PBM water with the evidence of microbial transmission from the gut of marron. Post-fed marron resulted in a significant correlation of Hafnia, Enterobacter, Candidatus Bacilloplasma and Aquitella with the quality and microbial population of water. The results of this study generated valuable knowledge database of microbes-water relationship for better health management practices and production of marron aquaculture fed with FM and PBM diets in under restricted feeding regime with the feeding ratios provided.

Vermicomposting: A Valorization Alternative for Corn Cob Waste

As vermicomposting has become a viable alternative for the valorization of organic waste; the objectives of this research were to (1) assess the feasibility of said process for corn cob waste (corn cobs and corn husks) and (2) evaluate the operation conditions for the biodegradation of different mixtures with load material (LM). LM did not include animal excreta as a nitrogen source, a practice widely used in a range of studies. The experiment consisted of an initial phase of pre-composting in order to obtain a partially stabilized substrate. Subsequently, four separate mixtures were made consisting of corn cob waste mixed with consistent load material (LM) containing vegetable waste and eggshells (CR, M1, M2, M3) to obtain a balance substrate able to facilitate degradation using Eisenia fetida earthworms. The following parameters were analyzed during the control process: temperature, pH, humidity, organic material (OM), total organic carbon (TOC), total nitrogen (TN) and carbon/nitrogen (C/N) ratio. The analysis of the final values of the stabilized mixtures showed that vermicomposting is indeed a feasible alternative for the degradation of corn cob waste for use as a soil improver.

Effect of Vermicompost Application on Mineral Nutrient Composition of Grains of Buckwheat (Fagopyrum esculentum M.)

Poor soil organic content is a major cause of declining crop productivity in developing countries. Less precipitation and high temperatures oxidize organic matter in the soils of semi-arid regions. Such a deficiency in the organic matter of the soils decreases the bioavailability of many nutrients. Organic amendments like vermicompost (VM) have the potential to overcome this problem, while decreasing the dependency on inorganic fertilizers. Thus, the aim of our study was to explore the best application rate of VM for the improvement of nutrient contents in buckwheat. We used two buckwheat cultivars i.e., Aktaş and Güneş were sown under variable rates of soil-applied VM (0, 0.75, 1.50, 2.25 and 3.00 t ha−1) in semi-arid highland conditions. The results demonstrated that the nutritional quality parameters were improved when VM was applied at the rate of 2.25 t ha−1. In addition, VM at 2.25 t ha−1 resulted in an improvement of the N and P contents of the grains. The P contents in the grains of the Güneş variety was higher (0.26%) than the Aktaş variety (0.24%). A significant improvement in Fe (%), Cu (%), Zn (%) and Mn contents (%) in the grains of buckwheat validated the efficacious functioning of 2.25 t ha−1 of VM. The Zn content of the grains was higher in the Güneş variety (34.06%) than the Aktaş variety (31.96%). However, no significant change in K, Ca and Mg was noted at any level of VM in both Aktaş and Güneş. It is concluded that a 2.25 t ha−1 VM application in the buckwheat crop under zero conventional fertilizer was the best level to boost the nutritional quality of the grains.

Sustainable advances on phosphorus utilization in soil via addition of biochar and humic substances

The intervention of human in phosphorus pool seems to be a vicious circle. The rapid population growth leads to the global food shortage, which leads to the massive use of phosphate fertilizer and the continuous exploitation of phosphate rocks. With the massive loss and fixation of phosphate fertilizer in the soil, the unavailable phosphorus in the soil becomes superfluous, while the phosphate mineral resources turn to scarce. Interestingly, exogenous carbonaceous materials, notably, biochar and humic substances, have been widely used as soil conditioners in agricultural production up to date, among other actions to interfere with the balance between the different phosphate species, which offer effective roles for increasing soil available phosphorus. This article reviews the regulation mechanisms of biochar and humic substances on phosphorus availability and circulation, including improving soil physicochemical characteristics, regulating microbial community structure, and directly interacting with phosphorus to affect the fate of phosphorus in soil. Finally, the prospects for future research directions are made, and it is hoped that the review of this article can arouse people's attention to the current plight of agricultural production and provide some methods for improving the efficiency of phosphate fertilizer use in the future.

Effects of Vermicompost Leachate versus Inorganic Fertilizer on Morphology and Microbial Traits in the Early Development Growth Stage in Mint (Mentha spicata L.) And Rosemary (Rosmarinus officinalis L.) Plants under Closed Hydroponic System

The objective of this study was to compare the morphology of M. spicata and R. officinalis plants, and the relative abundance quantification, colony-forming units, ribotypes, and biofilm former bacteria under an inorganic fertilizer and the use of vermicompost leachate in the rhizosphere under a closed hydroponic system. In mint (Mentha spicata) plants treated with the vermicompost leachate, growth increase was determined mainly in root length from an average of 38 cm in plants under inorganic fertilizer to 74 cm under vermicompost leachate. In rosemary (Rosmarinus officinalis), no changes were determined between the two treatments. There were differences in the compositions of microbial communities: For R. officinalis, eight ribotypes were identified, seven for inorganic fertilizer and four for vermicompost leachate. For M. spicata, eight ribotypes were identified, three of them exclusive to vermicompost leachate. However, no changes were observed in microbial communities between the two treatments. Otherwise, some changes were observed in the compositions of these communities over time. In both cases, the main found phylum was Firmicutes, with 60% for R. officinalis and 80% for M. spicata represented by the Bacillus genus. In conclusion, the use of vermicompost leachate under the hydroponic system is a viable alternative to achieve an increase in the production of M. spicata, and for both plants (mint and rosemary), the quality of the product and the microbial communities that inhabited them remained unaltered.

Metabarcoding analysis of the bacterial succession during vermicomposting of municipal solid waste employing the earthworm Eisenia fetida

A culture-independent DNA metabarcoding analysis of the bacterial communities was carried out throughout a complete vermicomposting cycle of municipal solid waste material using the earthworm Eisenia fetida. 16S rRNA amplicons from the initial material (0 days), an intermediate (42 days), and a final stage (84 days) were sequenced in an Illumina NGS platform and compared. A steady increase in community diversity was observed corresponding to a 2.5-fold higher taxa richness and correspondingly risen values of the Shannon and Simpson ecological indexes and the evenness parameter. A total of 49,665 operational taxonomic units (OTUs) were counted. From the qualitative standpoint, a clear successional shift was observed with an initial community dominated by putatively plant-associated groups belonging to the Rhizobiales order within the Alphaproteobacteria class, regressively leaving the scores of relative abundance (RA) to the Firmicutes phylum and in particular to the Bacilli. Vermistabilization of municipal solid waste (MSW) increased (p < 0.001) the TKN and total P content in the final vermicompost, while pH, TOC, and C/N ratio declined (p < 0.001) in the process. Likewise, a progressive decrease was noticed in β-glucosidase, acid phosphatase, and urease activity while protease and dehydrogenase showed a slight increase, followed by a steep fall. A strong positive correlation was observed among the canonical functions of physico-chemical attributes and enzyme activities. The canonical correspondence analysis (CCA) revealed that significant families did not change on the temporal scale; however, their abundance was influenced by the abiotic environmental factors. In comparison to prior studies on vermicomposting that used different earthworm species (Eisenia andrei) and different substrates, results reflect a considerable degree of substrate specificity for the earthworm species used. The results offer clues to optimize the vermistabilization of MSW along with its potential use in agriculture, to foster improved levels of the circular economy.

Vermiwash: An agent of disease and pest control in soil, a review

Vermiwash is a liquid extract produced from vermicompost in a medium where earthworms are richly populated. It comprises a massive decomposer bacteria count, mucus, vitamins, different bioavailable minerals, hormones, enzymes, different antimicrobial peptides, etc. This paper aimed to assess how these natural products in vermiwash suppressed the pathogen and pests. Thus, we have reviewed the importance of vermiwash/vermicompost in disease control, the mechanism of disease suppression, the components of vermiwash applied in disease suppression, and pest control to use the scientific facts in agriculture to enhance the productivity of the crops. The bioactive macromolecules from the skin secretion of earthworm, coelomic fluid, and mucus directly able to defend pathogenic soil microbes against the worm and thereby freed the environment from the disease. Earthworms establish symbiotic relations with microbes, produce an essential product that supports the growth of plants, and suppress plant's root disease. It is recomended that earthworm should be inoculated in an agricultural field, or prepare and apply its vermiwash/vermicompost as a spray or as additive bio-fertilizer in the soil to enhance the productivities of the crops.

An evaluation of selected chemical, biochemical, and biological parameters of soil enriched with vermicompost

The aim of this study was to assess the changes in chemical and microbial properties and enzymatic activity of soil enriched with vermicompost derived from household waste. The vermicompost was tested in the rhizosphere of Larix decidua seedlings cultivated in 10-L pots in: (i) nursery soil (as the control), (ii) soil with 10% v/v vermicompost, and (iii) with 20% v/v vermicompost. The impact of vermicompost was assessed in terms of soil C/N ratio; bacterial, fungal, and nematode counts; and enzymatic activity. It was found that vermicompost increased the C/N ratio from 21 to 32, as well as the content of nitrate from 78 to 134 mg kg^-1, of ammonium from 14 to 139 mg kg^-1, of phosphorus from 92 to 521 mg kg^-1, and of potassium from 142 to 1912 mg kg^-1, compared with the control soil. The abundance of beneficial bacteria was increased (from 8.61 × 10⁷ to 37.9 × 10⁷), along with decreases in microbiological ratios of fungi and bacteria (e.g. fungi/Bacillus from 0.18818 to 0.00425). A significant 2- to 4-fold increase was observed compared with the control in the number of beneficial nematodes belonging to bacterivorous, fungivorous, and predatory groups with no change in the abundance of plant-parasitic nematodes. Addition of vermicompost brought about a change in soil enzyme activity. Vermicompost reduced the activity of alkaline phosphatase only. Both doses of vermicompost led to an increase in the activity of acid phosphatase, inorganic pyrophosphatase, dehydrogenases, β-glucosidase, and urease. Only the higher dose had an effect on increasing the activity of o-diphenol oxidase and proteases. No significant change was observed for nitrate reductase. Also, the presence of antibiotics produced by bacteria was detected depending on the dose of vermicompost, e.g. iturin (ituC) and bacillomycin (bmyB) were found in soil with a dose of 20% v/v vermicompost. Overall, vermicompost produced from household waste can be an excellent organic fertilizer for larch forest nurseries.

First reported quantitative microbiota in different livestock manures used as organic fertilizers in the Northeast of Thailand

Northeastern Thailand relies on agriculture as a major economic activity, and has used high levels of agrochemicals due to low facility, and salty sandy soil. To support soil recovery and sustainable agriculture, local farmers have used organic fertilizers from farmed animal feces. However, knowledge about these animal fecal manures remains minimal restricting their optimal use. Specifically, while bacteria are important for soil and plant growth, an abundance and a diversity of bacterial composition in these animal fecal manures have not been reported to allow selection and adjustment for a more effective organic fertilizer. This study thereby utilized metagenomics combined with 16S rRNA gene quantitative PCR (qPCR) and sequencing to analyze quantitative microbiota profiles in association with nutrients (N, P, K), organic matters, and the other physiochemical properties, of the commonly used earthworm manure and other manures from livestock animals (including breed and feeding diet variations) in the region. Unlike the other manures, the earthworm manure demonstrated more favorable nutrient profiles and physiochemical properties for forming fertile soil. Despite low total microbial biomass, the microbiota were enriched with maximal OTUs and Chao richness, and no plant pathogenic bacteria were found based on the VFDB database. The microbial metabolic potentials supported functions to promote crop growth, such as C, N and P cyclings, xenobiotic degradation, and synthesis of bioactive compounds. Pearson's correlation analyses indicated that the quantitative microbiota of the earthworm manure were clustered in the same direction as N, and conductivity, salinity, and water content were essential to control the microbiota of animal manures.

Bacterial community composition of vermicompost-treated tomato rhizospheres

Vermicompost application has been shown to promote plant growth, alter the rhizosphere microbiome, and suppress plant pathogens. These beneficial properties are often attributed to the activity of vermicompost-associated microorganisms. However, little is known about the microbial shifts that occur in the rhizosphere after vermicompost application. To better understand the impact of vermicompost treatments on the assembly of rhizosphere bacterial communities, 16S rDNA communities of vermicompost and rhizospheres of each peat- and soil-grown tomatoes were profiled after conventional fertigation, irrigation without additional nutrients, and addition of three different vermicompost-extracts. The full dataset consisted of 412 identified genera, of which 317 remained following stringent quality filtration. Tomato rhizosphere microbiome responses to treatments were complex and unique between peat and soil growth substrates. Direct colonization of vermicompost-origin taxa into rhizospheres was limited, with genera Photobacterium and Luteimonas colonizing peat rhizospheres, genera Truepera, Phenylobacterium, and Lysinibacillus colonizing soil rhizospheres, and genus Pelagibius appearing in both soil and peat rhizospheres. Further patterns of differential abundance and presence/absence between treatments highlight vermicompost-mediated effects on rhizosphere microbiome assembly as an interplay of rhizosphere medium, direct colonization of vermicompost-origin taxa and vermicompost-induced shifts in the rhizosphere microbial community. This exploratory analysis is intended to provide an initial look at 16S community composition of vermicompost and the effects of vermicompost treatment on the rhizosphere microbiome assembly to highlight interactions of potential merit for subsequent investigations.

Silver nanoparticle from whole cells of the fungi Trichoderma spp. isolated from Brazilian Amazon

Metal nanoparticles are a promising approach for the development of new antimicrobial systems. Silver nanoparticles (AgNP) have a significant antibacterial activity through bacterial surface adsorption and oxidative stress induction, as indicated by recent observations. This research aimed to use endophytic fungi from the genus Trichoderma spp. isolated from the Bertholletia excelsa (Brazil-nut) seeds and the soil to biosynthesize AgNPs and also test their antibacterial activity. The use of these fungi for this purpose not only valorizes the Amazon biodiversity but it also uses cleaner and cheaper processes, being part of the Green Chemistry concept. The particles were analyzed through Ultraviolet-Visible Spectroscopy and ZetaSizer and the band of absorption at 420 nm was analyzed through Localized Surface Plasmon Resonance. After characterization, the AgNP were tested for antibacterial activity against several bacterial strains, when it was observed that their antibacterial activity was superior in Gram-negative bacteria.