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For: Venkatesh B, Kirkness EF, Loh YH, Halpern AL, Lee AP, Johnson J, Dandona N, Viswanathan LD, Tay A, Venter JC, Strausberg RL, Brenner S. Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome. PLoS Biol 2007;5:e101. [PMID: 17407382 PMCID: PMC1845163 DOI: 10.1371/journal.pbio.0050101] [Citation(s) in RCA: 265] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2006] [Accepted: 02/07/2007] [Indexed: 02/04/2023]  Open
Number Cited by Other Article(s)
1
Liu D, Wang X, Lü J, Zhu Y, Jian Y, Wang X, Gao F, Li L, Hu F. Whole-Genome Sequencing of Hexagrammos otakii Provides Insights into Its Genomic Characteristics and Population Dynamics. Animals (Basel) 2025;15:782. [PMID: 40150311 PMCID: PMC11939782 DOI: 10.3390/ani15060782] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2025] [Revised: 02/11/2025] [Accepted: 02/25/2025] [Indexed: 03/29/2025]  Open
2
Mayeur H, Leyhr J, Mulley J, Leurs N, Michel L, Sharma K, Lagadec R, Aury JM, Osborne OG, Mulhair P, Poulain J, Mangenot S, Mead D, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Dolucan J, Dudchenko O, Omer AD, Weisz D, Aiden EL, McCarthy SA, Sims Y, Torrance J, Tracey A, Howe K, Baril T, Hayward A, Martinand-Mari C, Sanchez S, Haitina T, Martin K, Korsching SI, Mazan S, Debiais-Thibaud M. The Sensory Shark: High-quality Morphological, Genomic and Transcriptomic Data for the Small-spotted Catshark Scyliorhinus Canicula Reveal the Molecular Bases of Sensory Organ Evolution in Jawed Vertebrates. Mol Biol Evol 2024;41:msae246. [PMID: 39657112 PMCID: PMC11979771 DOI: 10.1093/molbev/msae246] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2024] [Revised: 11/21/2024] [Accepted: 11/21/2024] [Indexed: 12/16/2024]  Open
3
Husien HM, Saleh AA, Hassanine NNAM, Rashad AMA, Sharaby MA, Mohamed AZ, Abdelhalim H, Hafez EE, Essa MOA, Adam SY, Chen N, Wang M. The Evolution and Role of Molecular Tools in Measuring Diversity and Genomic Selection in Livestock Populations (Traditional and Up-to-Date Insights): A Comprehensive Exploration. Vet Sci 2024;11:627. [PMID: 39728967 DOI: 10.3390/vetsci11120627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2024] [Revised: 12/03/2024] [Accepted: 12/04/2024] [Indexed: 12/28/2024]  Open
4
Mayeur H, Leyhr J, Mulley J, Leurs N, Michel L, Sharma K, Lagadec R, Aury JM, Osborne OG, Mulhair P, Poulain J, Mangenot S, Mead D, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Dolucan J, Dudchenko O, Omer AD, Weisz D, Aiden EL, McCarthy S, Sims Y, Torrance J, Tracey A, Howe K, Baril T, Hayward A, Martinand-Mari C, Sanchez S, Haitina T, Martin K, Korsching SI, Mazan S, Debiais-Thibaud M. The sensory shark: high-quality morphological, genomic and transcriptomic data for the small-spotted catshark Scyliorhinus canicula reveal the molecular bases of sensory organ evolution in jawed vertebrates. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.23.595469. [PMID: 39005470 PMCID: PMC11244906 DOI: 10.1101/2024.05.23.595469] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/16/2024]
5
Blanco M, Sanz N, Pérez-Martín RI, Sotelo CG. Deepening in the understanding of the role of collagen subunits on the differential molecular arrangement of P. glauca and M. merluccius marine collagens. Protein Expr Purif 2023;212:106356. [PMID: 37604271 DOI: 10.1016/j.pep.2023.106356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Revised: 07/28/2023] [Accepted: 08/17/2023] [Indexed: 08/23/2023]
6
Wang C, Ye P, Pillans R, Chen X, Wang J, Feutry P. Evolution of the Critically Endangered Green Sawfish Pristis zijsron (Rhinopristiformes, Pristidae), Inferred from the Whole Mitochondrial Genome. Genes (Basel) 2023;14:2052. [PMID: 38002995 PMCID: PMC10671267 DOI: 10.3390/genes14112052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Revised: 10/28/2023] [Accepted: 11/02/2023] [Indexed: 11/26/2023]  Open
7
Wang X, Fang C, Wang C. Complete mitochondrial genome of Hydrolagus mitsukurii (Jordan & Snyder, 1904). Mitochondrial DNA B Resour 2023;8:682-685. [PMID: 37346173 PMCID: PMC10281295 DOI: 10.1080/23802359.2023.2222852] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Accepted: 06/02/2023] [Indexed: 06/23/2023]  Open
8
Jeanne F, Bernay B, Sourdaine P. Comparative Proteome Analysis of Four Stages of Spermatogenesis in the Small-Spotted Catshark (Scyliorhinus canicula), Using High-Resolution NanoLC-ESI-MS/MS. J Proteome Res 2023. [PMID: 37290099 DOI: 10.1021/acs.jproteome.3c00206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
9
Huang Z, Xu L, Cai C, Zhou Y, Liu J, Xu Z, Zhu Z, Kang W, Cen W, Pei S, Chen D, Shi C, Wu X, Huang Y, Xu C, Yan Y, Yang Y, Xue T, He W, Hu X, Zhang Y, Chen Y, Bi C, He C, Xue L, Xiao S, Yue Z, Jiang Y, Yu JK, Jarvis E, Li G, Lin G, Zhang Q, Zhou Q. Three amphioxus reference genomes reveal gene and chromosome evolution of chordates. Proc Natl Acad Sci U S A 2023;120:e2201504120. [PMID: 36867684 PMCID: PMC10013865 DOI: 10.1073/pnas.2201504120] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Accepted: 01/18/2023] [Indexed: 03/05/2023]  Open
10
Kuraku S, Kaiya H, Tanaka T, Hyodo S. Evolution of Vertebrate Hormones and Their Receptors: Insights from Non-Osteichthyan Genomes. Annu Rev Anim Biosci 2023;11:163-182. [PMID: 36400012 DOI: 10.1146/annurev-animal-050922-071351] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
11
Shaping Hox gene activity to generate morphological diversity across vertebrate phylogeny. Essays Biochem 2022;66:717-726. [PMID: 35924372 DOI: 10.1042/ebc20220050] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Revised: 07/20/2022] [Accepted: 07/25/2022] [Indexed: 02/07/2023]
12
Tseng YC, Yan JJ, Furukawa F, Chen RD, Lee JR, Tsou YL, Liu TY, Tang YH, Hwang PP. Teleostean fishes may have developed an efficient Na+ uptake for adaptation to the freshwater system. Front Physiol 2022;13:947958. [PMID: 36277196 PMCID: PMC9581171 DOI: 10.3389/fphys.2022.947958] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Accepted: 09/20/2022] [Indexed: 11/24/2022]  Open
13
Li YL, Gong XY, Qu ZL, Zhao X, Dan C, Gui JF, Zhang YB. A Novel Non-Mammalian-Specific HERC7 Negatively Regulates IFN Response through Degrading RLR Signaling Factors. JOURNAL OF IMMUNOLOGY (BALTIMORE, MD. : 1950) 2022;208:1189-1203. [PMID: 35101889 DOI: 10.4049/jimmunol.2100962] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2021] [Accepted: 12/13/2021] [Indexed: 12/12/2022]
14
Comprehensive Draft Genome Analyses of Three Rockfishes (Scorpaeniformes, Sebastiscus) via Genome Survey Sequencing. Curr Issues Mol Biol 2021;43:2048-2058. [PMID: 34889891 PMCID: PMC8929126 DOI: 10.3390/cimb43030141] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Revised: 11/11/2021] [Accepted: 11/15/2021] [Indexed: 01/03/2023]  Open
15
The gastrin-releasing peptide/bombesin system revisited by a reverse-evolutionary study considering Xenopus. Sci Rep 2021;11:13315. [PMID: 34172791 PMCID: PMC8233351 DOI: 10.1038/s41598-021-92528-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Accepted: 06/07/2021] [Indexed: 02/07/2023]  Open
16
Shark and ray genomics for disentangling their morphological diversity and vertebrate evolution. Dev Biol 2021;477:262-272. [PMID: 34102168 DOI: 10.1016/j.ydbio.2021.06.001] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Revised: 05/17/2021] [Accepted: 06/01/2021] [Indexed: 11/24/2022]
17
Kinlein A, Janes ME, Kincer J, Almeida T, Matz H, Sui J, Criscitiello MF, Flajnik MF, Ohta Y. Analysis of shark NCR3 family genes reveals primordial features of vertebrate NKp30. Immunogenetics 2021;73:333-348. [PMID: 33742259 DOI: 10.1007/s00251-021-01209-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2020] [Accepted: 02/07/2021] [Indexed: 11/26/2022]
18
Complete Mitochondrial DNA Genome of Nine Species of Sharks and Rays and Their Phylogenetic Placement among Modern Elasmobranchs. Genes (Basel) 2021;12:genes12030324. [PMID: 33668210 PMCID: PMC7995966 DOI: 10.3390/genes12030324] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Revised: 02/20/2021] [Accepted: 02/22/2021] [Indexed: 11/16/2022]  Open
19
Lovett-Barron M. Sensory Neuroscience: Smelling Salts Lead Fish to Safety. Curr Biol 2021;31:R199-R201. [PMID: 33621509 DOI: 10.1016/j.cub.2020.12.021] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
20
Möbius W, Hümmert S, Ruhwedel T, Kuzirian A, Gould R. New Species Can Broaden Myelin Research: Suitability of Little Skate, Leucoraja erinacea. Life (Basel) 2021;11:136. [PMID: 33670172 PMCID: PMC7916940 DOI: 10.3390/life11020136] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Revised: 02/02/2021] [Accepted: 02/06/2021] [Indexed: 02/06/2023]  Open
21
Ott JA, Ohta Y, Flajnik MF, Criscitiello MF. Lost structural and functional inter-relationships between Ig and TCR loci in mammals revealed in sharks. Immunogenetics 2021;73:17-33. [PMID: 33449123 PMCID: PMC7909615 DOI: 10.1007/s00251-020-01183-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Accepted: 10/26/2020] [Indexed: 12/19/2022]
22
Larval Zebrafish Use Olfactory Detection of Sodium and Chloride to Avoid Salt Water. Curr Biol 2020;31:782-793.e3. [PMID: 33338431 DOI: 10.1016/j.cub.2020.11.051] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Revised: 11/17/2020] [Accepted: 11/18/2020] [Indexed: 12/19/2022]
23
Kennard AS, Theriot JA. Osmolarity-independent electrical cues guide rapid response to injury in zebrafish epidermis. eLife 2020;9:e62386. [PMID: 33225997 PMCID: PMC7721437 DOI: 10.7554/elife.62386] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2020] [Accepted: 11/17/2020] [Indexed: 01/02/2023]  Open
24
Ahmad SF, Jehangir M, Cardoso AL, Wolf IR, Margarido VP, Cabral-de-Mello DC, O'Neill R, Valente GT, Martins C. B chromosomes of multiple species have intense evolutionary dynamics and accumulated genes related to important biological processes. BMC Genomics 2020;21:656. [PMID: 32967626 PMCID: PMC7509943 DOI: 10.1186/s12864-020-07072-1] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Accepted: 09/14/2020] [Indexed: 01/12/2023]  Open
25
Fonseca E, Machado AM, Vilas-Arrondo N, Gomes-Dos-Santos A, Veríssimo A, Esteves P, Almeida T, Themudo G, Ruivo R, Pérez M, da Fonseca R, Santos MM, Froufe E, Román-Marcote E, Venkatesh B, Castro LFC. Cartilaginous fishes offer unique insights into the evolution of the nuclear receptor gene repertoire in gnathostomes. Gen Comp Endocrinol 2020;295:113527. [PMID: 32526329 DOI: 10.1016/j.ygcen.2020.113527] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/07/2020] [Revised: 05/15/2020] [Accepted: 06/03/2020] [Indexed: 12/12/2022]
26
Simakov O, Marlétaz F, Yue JX, O'Connell B, Jenkins J, Brandt A, Calef R, Tung CH, Huang TK, Schmutz J, Satoh N, Yu JK, Putnam NH, Green RE, Rokhsar DS. Deeply conserved synteny resolves early events in vertebrate evolution. Nat Ecol Evol 2020;4:820-830. [PMID: 32313176 PMCID: PMC7269912 DOI: 10.1038/s41559-020-1156-z] [Citation(s) in RCA: 222] [Impact Index Per Article: 44.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Accepted: 02/19/2020] [Indexed: 01/24/2023]
27
Wang M, Li P, Wang H, Dong L, Wu C, Zhao Z. Identification and spatiotemporal expression of gpr161 genes in zebrafish. Gene 2020;730:144303. [PMID: 31884103 DOI: 10.1016/j.gene.2019.144303] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2019] [Revised: 11/26/2019] [Accepted: 12/18/2019] [Indexed: 11/16/2022]
28
Deiss TC, Breaux B, Ott JA, Daniel RA, Chen PL, Castro CD, Ohta Y, Flajnik MF, Criscitiello MF. Ancient Use of Ig Variable Domains Contributes Significantly to the TCRδ Repertoire. THE JOURNAL OF IMMUNOLOGY 2019;203:1265-1275. [PMID: 31341077 DOI: 10.4049/jimmunol.1900369] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Accepted: 07/01/2019] [Indexed: 01/05/2023]
29
Rizzari JR, Finucci B. Elephantfish. Curr Biol 2019;29:R352-R353. [DOI: 10.1016/j.cub.2019.03.021] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
30
Awruch CA, Somoza GM, Baldock C. Chondrichthyan research in South America: Endocrinology overview and research trends over 50 years (1967-2016) compared to the rest of the world. Gen Comp Endocrinol 2019;273:118-133. [PMID: 29913167 DOI: 10.1016/j.ygcen.2018.06.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/28/2018] [Revised: 05/22/2018] [Accepted: 06/15/2018] [Indexed: 12/17/2022]
31
Matz H, Dooley H. Shark IgNAR-derived binding domains as potential diagnostic and therapeutic agents. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 2019;90:100-107. [PMID: 30236879 DOI: 10.1016/j.dci.2018.09.007] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Revised: 08/19/2018] [Accepted: 09/14/2018] [Indexed: 06/08/2023]
32
Delroisse J, Duchatelet L, Flammang P, Mallefet J. De novo transcriptome analyses provide insights into opsin-based photoreception in the lanternshark Etmopterus spinax. PLoS One 2018;13:e0209767. [PMID: 30596723 PMCID: PMC6312339 DOI: 10.1371/journal.pone.0209767] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2018] [Accepted: 12/11/2018] [Indexed: 12/12/2022]  Open
33
Gaillard AL, Tay BH, Pérez Sirkin DI, Lafont AG, De Flori C, Vissio PG, Mazan S, Dufour S, Venkatesh B, Tostivint H. Characterization of Gonadotropin-Releasing Hormone (GnRH) Genes From Cartilaginous Fish: Evolutionary Perspectives. Front Neurosci 2018;12:607. [PMID: 30237760 PMCID: PMC6135963 DOI: 10.3389/fnins.2018.00607] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2018] [Accepted: 08/10/2018] [Indexed: 11/13/2022]  Open
34
Onimaru K, Motone F, Kiyatake I, Nishida K, Kuraku S. A staging table for the embryonic development of the brownbanded bamboo shark (Chiloscyllium punctatum). Dev Dyn 2018;247:712-723. [PMID: 29396887 PMCID: PMC5947634 DOI: 10.1002/dvdy.24623] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2017] [Revised: 12/12/2017] [Accepted: 01/25/2018] [Indexed: 01/19/2023]  Open
35
Neuman RI, van Kalmthout JAM, Pfau DJ, Menendez DM, Young LH, Forrest JN. AMP-activated protein kinase and adenosine are both metabolic modulators that regulate chloride secretion in the shark rectal gland ( Squalus acanthias). Am J Physiol Cell Physiol 2018;314:C473-C482. [PMID: 29351415 PMCID: PMC5966785 DOI: 10.1152/ajpcell.00171.2017] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2017] [Revised: 12/04/2017] [Accepted: 12/14/2017] [Indexed: 12/12/2022]
36
Read TD, Petit RA, Joseph SJ, Alam MT, Weil MR, Ahmad M, Bhimani R, Vuong JS, Haase CP, Webb DH, Tan M, Dove ADM. Draft sequencing and assembly of the genome of the world's largest fish, the whale shark: Rhincodon typus Smith 1828. BMC Genomics 2017;18:532. [PMID: 28709399 PMCID: PMC5513125 DOI: 10.1186/s12864-017-3926-9] [Citation(s) in RCA: 50] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2017] [Accepted: 07/06/2017] [Indexed: 11/10/2022]  Open
37
Vlasschaert C, Cook D, Xia X, Gray DA. The evolution and functional diversification of the deubiquitinating enzyme superfamily. Genome Biol Evol 2017;9:558-573. [PMID: 28177072 PMCID: PMC5381560 DOI: 10.1093/gbe/evx020] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2016] [Revised: 01/18/2017] [Accepted: 02/04/2017] [Indexed: 12/16/2022]  Open
38
Marra NJ, Richards VP, Early A, Bogdanowicz SM, Pavinski Bitar PD, Stanhope MJ, Shivji MS. Comparative transcriptomics of elasmobranchs and teleosts highlight important processes in adaptive immunity and regional endothermy. BMC Genomics 2017;18:87. [PMID: 28132643 PMCID: PMC5278576 DOI: 10.1186/s12864-016-3411-x] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2016] [Accepted: 12/12/2016] [Indexed: 02/08/2023]  Open
39
Sotero-Caio CG, Platt RN, Suh A, Ray DA. Evolution and Diversity of Transposable Elements in Vertebrate Genomes. Genome Biol Evol 2017;9:161-177. [PMID: 28158585 PMCID: PMC5381603 DOI: 10.1093/gbe/evw264] [Citation(s) in RCA: 161] [Impact Index Per Article: 20.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/06/2016] [Indexed: 12/21/2022]  Open
40
Ankley GT, LaLone CA, Gray LE, Villeneuve DL, Hornung MW. Evaluation of the scientific underpinnings for identifying estrogenic chemicals in nonmammalian taxa using mammalian test systems. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2016;35:2806-2816. [PMID: 27074246 DOI: 10.1002/etc.3456] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2016] [Revised: 04/03/2016] [Accepted: 04/08/2016] [Indexed: 05/02/2023]
41
Swift DG, Dunning LT, Igea J, Brooks EJ, Jones CS, Noble LR, Ciezarek A, Humble E, Savolainen V. Evidence of positive selection associated with placental loss in tiger sharks. BMC Evol Biol 2016;16:126. [PMID: 27296413 PMCID: PMC4906603 DOI: 10.1186/s12862-016-0696-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2016] [Accepted: 06/02/2016] [Indexed: 11/10/2022]  Open
42
Hasegawa K, Kato A, Watanabe T, Takagi W, Romero MF, Bell JD, Toop T, Donald JA, Hyodo S. Sulfate transporters involved in sulfate secretion in the kidney are localized in the renal proximal tubule II of the elephant fish (Callorhinchus milii). Am J Physiol Regul Integr Comp Physiol 2016;311:R66-78. [PMID: 27122370 PMCID: PMC4967232 DOI: 10.1152/ajpregu.00477.2015] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2015] [Accepted: 03/22/2016] [Indexed: 11/22/2022]
43
Hanukoglu I, Hanukoglu A. Epithelial sodium channel (ENaC) family: Phylogeny, structure-function, tissue distribution, and associated inherited diseases. Gene 2016;579:95-132. [PMID: 26772908 PMCID: PMC4756657 DOI: 10.1016/j.gene.2015.12.061] [Citation(s) in RCA: 276] [Impact Index Per Article: 30.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2015] [Revised: 12/20/2015] [Accepted: 12/22/2015] [Indexed: 01/24/2023]
44
Gutierrez-Mazariegos J, Nadendla EK, Studer RA, Alvarez S, de Lera AR, Kuraku S, Bourguet W, Schubert M, Laudet V. Evolutionary diversification of retinoic acid receptor ligand-binding pocket structure by molecular tinkering. ROYAL SOCIETY OPEN SCIENCE 2016;3:150484. [PMID: 27069642 PMCID: PMC4821253 DOI: 10.1098/rsos.150484] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/14/2015] [Accepted: 02/12/2016] [Indexed: 06/05/2023]
45
de Bellard ME. Myelin in cartilaginous fish. Brain Res 2016;1641:34-42. [PMID: 26776480 DOI: 10.1016/j.brainres.2016.01.013] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2015] [Revised: 01/06/2016] [Accepted: 01/08/2016] [Indexed: 11/17/2022]
46
Yamaguchi Y, Takagi W, Kuraku S, Moriyama S, Bell JD, Seale AP, Lerner DT, Grau EG, Hyodo S. Discovery of conventional prolactin from the holocephalan elephant fish, Callorhinchus milii. Gen Comp Endocrinol 2015;224:216-27. [PMID: 26320855 DOI: 10.1016/j.ygcen.2015.08.020] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/22/2015] [Revised: 08/22/2015] [Accepted: 08/27/2015] [Indexed: 11/17/2022]
47
Liu H, Lamm MS, Rutherford K, Black MA, Godwin JR, Gemmell NJ. Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish. Biol Sex Differ 2015;6:26. [PMID: 26613014 PMCID: PMC4660848 DOI: 10.1186/s13293-015-0044-8] [Citation(s) in RCA: 73] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/11/2015] [Accepted: 11/09/2015] [Indexed: 12/25/2022]  Open
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Onimaru K, Kuraku S, Takagi W, Hyodo S, Sharpe J, Tanaka M. A shift in anterior-posterior positional information underlies the fin-to-limb evolution. eLife 2015;4. [PMID: 26283004 PMCID: PMC4538735 DOI: 10.7554/elife.07048] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2015] [Accepted: 07/15/2015] [Indexed: 02/07/2023]  Open
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Morphological and molecular investigations of the holocephalan elephant fish nephron: the existence of a countercurrent-like configuration and two separate diluting segments in the distal tubule. Cell Tissue Res 2015;362:677-88. [PMID: 26183720 DOI: 10.1007/s00441-015-2234-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2015] [Accepted: 06/05/2015] [Indexed: 10/23/2022]
50
Comparative Evolution of Duplicated Ddx3 Genes in Teleosts: Insights from Japanese Flounder, Paralichthys olivaceus. G3-GENES GENOMES GENETICS 2015;5:1765-73. [PMID: 26109358 PMCID: PMC4528332 DOI: 10.1534/g3.115.018911] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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