Recording behaviour of indoor-housed farm animals automatically using machine vision technology: A systematic review

Genetic Contributions to Aggressive Behaviour in Pigs: A Comprehensive Review

Aggressive behaviour in pigs poses significant challenges to animal welfare, production efficiency, and economic performance in the pork industry. This review explores the multifaceted causes of pig aggression, focusing on genetic, environmental, and physiological factors. Aggression in pigs is categorized into social, maternal, fear-induced, play, and redirected aggression, with early-life hierarchies and environmental stressors playing critical roles. Physiological markers, such as elevated cortisol and reduced serotonin levels, are closely linked to aggressive behaviour, while dietary interventions, including tryptophan supplementation, have shown promise in mitigating aggression. Environmental factors, such as overcrowding, noise, and heat stress, exacerbate aggressive tendencies, whereas enrichment strategies, like music and improved housing conditions, can reduce stress and aggression. Genome-wide analyses have pinpointed specific polymorphisms in neurotransmitter genes (DRD2, SLC6A4, MAOA) and stress-response loci (RYR1) as significant predictors of porcine aggression. Advances in genomic technologies, including genome-wide association studies (GWASs) and transcriptomic analyses, have further elucidated the genetic and epigenetic underpinnings of aggressive behaviour. Practical application in breeding programmes remains challenging due to aggression polygenic nature and industry hesitancy toward genomic approaches. Future research should focus on integrating genetic markers into breeding programmes, developing multitrait selection indices, and exploring epigenetic modifications to improve animal welfare and production efficiency. By addressing these challenges, the pork industry can enhance both the well-being of pigs and the sustainability of production systems.

BiAF: research on dynamic goat herd detection and tracking based on machine vision

As technology advances, rangeland management is rapidly transitioning toward intelligent systems. To optimize grassland resources and implement scientific grazing practices, livestock grazing monitoring has become a pivotal area of research. Traditional methods, such as manual tracking and wearable monitoring, often disrupt the natural movement and feeding behaviors of grazing livestock, posing significant challenges for in-depth studies of grazing patterns. In this paper, we propose a machine vision-based grazing goat herd detection algorithm that enhances the streamlined ELAN module in YOLOv7-tiny, incorporates an optimized CBAM attention mechanism, refines the SPPCSPC module to reduce the parameter count, and improves the anchor boxes in YOLOv7-tiny to enhance target detection accuracy. The BiAF-YOLOv7 algorithm achieves precision, recall, F1 score, and mAP values of 94.5, 96.7, 94.8, and 96.0%, respectively, on the goat herd dataset. Combined with DeepSORT, our system successfully tracks goat herds, demonstrating the effectiveness of the BiAF-YOLOv7 algorithm as a tool for livestock grazing monitoring. This study not only validates the practicality of the proposed algorithm but also highlights the broader applicability of machine vision-based monitoring in large-scale environments. It provides innovative approaches to achieve grass-animal balance through information-driven methods, such as monitoring and tracking.

Beyond the hype: using AI, big data, wearable devices, and the internet of things for high-throughput livestock phenotyping

Phenotyping of animals is a routine task in agriculture which can provide large datasets for the functional annotation of genomes. Using the livestock farming sector to study complex traits enables genetics researchers to fully benefit from the digital transformation of society as economies of scale substantially reduces the cost of phenotyping animals on farms. In the agricultural sector genomics has transitioned towards a model of 'Genomics without the genes' as a large proportion of the genetic variation in animals can be modelled using the infinitesimal model for genomic breeding valuations. Combined with third generation sequencing creating pan-genomes for livestock the digital infrastructure for trait collection and precision farming provides a unique opportunity for high-throughput phenotyping and the study of complex traits in a controlled environment. The emphasis on cost efficient data collection mean that mobile phones and computers have become ubiquitous for cost-efficient large-scale data collection but that the majority of the recorded traits can still be recorded manually with limited training or tools. This is especially valuable in low- and middle income countries and in settings where indigenous breeds are kept at farms preserving more traditional farming methods. Digitalization is therefore an important enabler for high-throughput phenotyping for smaller livestock herds with limited technology investments as well as large-scale commercial operations. It is demanding and challenging for individual researchers to keep up with the opportunities created by the rapid advances in digitalization for livestock farming and how it can be used by researchers with or without a specialization in livestock. This review provides an overview of the current status of key enabling technologies for precision livestock farming applicable for the functional annotation of genomes.

RGB-based machine vision for enhanced pig disease symptoms monitoring and health management: a review

The growing demands of sustainable, efficient, and welfare-conscious pig husbandry have necessitated the adoption of advanced technologies. Among these, RGB imaging and machine vision technology may offer a promising solution for early disease detection and proactive disease management in advanced pig husbandry practices. This review explores innovative applications for monitoring disease symptoms by assessing features that directly or indirectly indicate disease risk, as well as for tracking body weight and overall health. Machine vision and image processing algorithms enable for the real-time detection of subtle changes in pig appearance and behavior that may signify potential health issues. Key indicators include skin lesions, inflammation, ocular and nasal discharge, and deviations in posture and gait, each of which can be detected non-invasively using RGB cameras. Moreover, when integrated with thermal imaging, RGB systems can detect fever, a reliable indicator of infection, while behavioral monitoring systems can track abnormal posture, reduced activity, and altered feeding and drinking habits, which are often precursors to illness. The technology also facilitates the analysis of respiratory symptoms, such as coughing or sneezing (enabling early identification of respiratory diseases, one of the most significant challenges in pig farming), and the assessment of fecal consistency and color (providing valuable insights into digestive health). Early detection of disease or poor health supports proactive interventions, reducing mortality and improving treatment outcomes. Beyond direct symptom monitoring, RGB imaging and machine vision can indirectly assess disease risk by monitoring body weight, feeding behavior, and environmental factors such as overcrowding and temperature. However, further research is needed to refine the accuracy and robustness of algorithms in diverse farming environments. Ultimately, integrating RGB-based machine vision into existing farm management systems could provide continuous, automated surveillance, generating real-time alerts and actionable insights; these can support data-driven disease prevention strategies, reducing the need for mass medication and the development of antimicrobial resistance.

Benchmarking analysis of computer vision algorithms on edge devices for the real-time detection of digital dermatitis in dairy cows

Digital dermatitis (DD) is a bovine claw disease responsible for ulcerative lesions on the coronary band of the foot. It causes significant animal welfare and economic losses to the cattle industry. Early detection of DD can lead to prompt treatment and decrease lameness. Current detection and staging methods require a trained individual to evaluate the interdigital space on each foot for clinical signs of DD. Computer vision (CV), a type of artificial intelligence for image analysis, has demonstrated promising results on object detection tasks. However, farms require robust solutions that can be deployed in harsh conditions including dust, debris, humidity, precipitation, other equipment issues. The study aims to train, deploy, and benchmark DD detection models on edge devices. Images were collected from commercial dairy farms with the camera facing the interdigital space on the plantar surface of the foot. Images were scored for M-stages of DD by a trained investigator using the M-stage DD classification system. Models were trained to detect and score DD lesions and embedded on an edge device. The Tiny YOLOv4 model deployed on a CV specific integrated camera module connected to a single board computer achieved a mean average precision (mAP) of 0.895, an overall prediction accuracy of 0.873, and a Cohen's kappa of 0.830 for agreement between the computer vision model and the trained investigator. The model reached a final inference speed of 40 frames per second (FPS) and ran stably without any interruptions. The CV model was able to detect DD lesions on an edge device with high performance and speed. The CV tool can be used for early detection and prompt treatment of DD in dairy cows. Real-time detection of DD on edge device will improve health outcomes, while simultaneously decreasing labor costs. We demonstrate that the deployed model can be a low-power and portable solution for real-time detection of DD on dairy farms. This result is a step towards applying CV algorithms to veterinary medicine and implementing real-time detection of health outcomes in precision farming.

Trends and challenges in liquid-preserved boar semen production: From boar to product

Boar semen production plays a pivotal role in modern swine breeding programmes, influencing the genetic progress and overall efficiency of the pork industry. This review explores the current challenges and emerging trends in liquid-preserved boar semen production, addressing key issues that impact the quality and quantity of boar semen. Advances in new reproductive technologies, boar selection, housing, semen processing, storage and transport, and the need for sustainable practices including the use of artificial intelligence are discussed to provide a comprehensive overview of the field.

Comparative analysis of computer vision algorithms for the real-time detection of digital dermatitis in dairy cows

Digital dermatitis (DD) is a bovine claw disease responsible for ulcerative lesions on the planar aspect of the hoof. DD is associated with massive herd outbreaks of lameness and influences cattle welfare and production. Early detection of DD can lead to prompt treatment and decrease lameness. Computer vision (CV) provides a unique opportunity to improve early detection. The study aims to train and compare applications for the real-time detection of DD in dairy cows. Eight CV models were trained for detection and scoring, compared using performance metrics and inference time, and the best model was automated for real-time detection using images and video. Images were collected from commercial dairy farms while facing the interdigital space on the plantar surface of the foot. Images were scored for M-stages of DD by a trained investigator using the M-stage DD classification system with distinct labels for hyperkeratosis (H) and proliferations (P). Two sets of images were compiled: the first dataset (Dataset 1) containing 1,177 M0/M4H and 1,050 M2/M2P images and the second dataset (Dataset 2) containing 240 M0, 17 M2, 51 M2P, 114 M4H, and 108 M4P images. Models were trained to detect and score DD lesions and compared for precision, recall, and mean average precision (mAP) in addition to inference time in frame per second (FPS). Seven of the nine CV models performed well compared to the ground truth of labeled images using Dataset 1. The six models, Faster R-CNN, Cascade R-CNN, YOLOv3, Tiny YOLOv3, YOLOv4, Tiny YOLOv4, and YOLOv5s achieved an mAP between 0.964 and 0.998, whereas the other two models, SSD and SSD Lite, yielded an mAP of 0.371 and 0.387 respectively. Overall, YOLOv4, Tiny YOLOv4, and YOLOv5s outperformed all other models with almost perfect precision, perfect recall, and a higher mAP. Tiny YOLOv4 outperformed all other models with respect to inference time at 333 FPS, followed by YOLOv5s at 133 FPS and YOLOv4 at 65 FPS. YOLOv4 and Tiny YOLOv4 performed better than YOLOv5s compared to the ground truth using Dataset 2. YOLOv4 and Tiny YOLOv4 yielded a similar mAP of 0.896 and 0.895, respectively. However, Tiny YOLOv4 achieved both higher precision and recall compared to YOLOv4. Finally, Tiny YOLOv4 was able to detect DD lesions on a commercial dairy farm with high performance and speed. The proposed CV tool can be used for early detection and prompt treatment of DD in dairy cows. This result is a step towards applying CV algorithms to veterinary medicine and implementing real-time DD detection on dairy farms.

Effects of group size on agonistic interactions in dairy cows: a descriptive study

Group-housed cattle may engage in agonistic interactions over resources such as feed, which can negatively affect aspects of welfare. Little is known about how contextual factors such as group size influence agonistic behaviour. We explored the frequency of agonistic interactions at the feeder when cattle were housed in different-sized groups. We also explored the consistency of the directionality of agonistic interactions in dyads and of the number of agonistic interactions initiated by individuals across the group sizes. Four replicates of 50 cows each were assessed in two group-size phases. In Phase 1, cows were kept in one group of 50. In Phase 2, these same cows were divided into five groups of 10, maintaining stocking density (i.e., ratio of animals to lying stalls and feed bunk spaces). We measured agonistic replacements (i.e., interactions that result in one cow leaving the feed bin and another taking her place) at an electronic feeder using a validated algorithm. We used these data from Phase 1 to calculate individual Elo-ratings (a type of dominance score). Cows were then categorised into five dominance categories based upon these ratings. To ensure a consistent Elo-rating distribution between phases, two cows from each dominance category were randomly assigned to each small group of 10 cows. The mean ± SE number of replacements per cow was similar regardless of whether the cows were housed in groups of 50 (34.1 ± 2.4) or 10 (31.1 ± 4.5), although the groups of 10 were more variable. Further, 81.6 ± 7.7% (mean ± SD) of dyads had the same directionality across group sizes (i.e., the same individual won the majority of interactions in the dyad) and individuals were moderately consistent in the number of replacements they initiated (intraclass correlation coefficient = 0.62 ± 0.11; mean ± SD). These results indicate that the relationship between group size and agonistic behaviour is complex; we discuss these challenges and suggest new avenues for further research.

Biometric identification of dairy cows via real-time facial recognition

Biometrics methods, which currently identify humans, can potentially identify dairy cows. Given that animal movements cannot be easily controlled, identification accuracy and system robustness are challenging when deploying an animal biometrics recognition system on a real farm. Our proposed method performs multiple-cow face detection and face classification from videos by adjusting recent state-of-the-art deep-learning methods. As part of this study, a system was designed and installed at four meters above a feeding zone at the Volcani Institute's dairy farm. Two datasets were acquired and annotated, one for facial detection and the second for facial classification of 77 cows. We achieved for facial detection a mean average precision (at Intersection over Union of 0.5) of 97.8% using the YOLOv5 algorithm, and facial classification accuracy of 96.3% using a Vision-Transformer model with a unique loss-function borrowed from human facial recognition. Our combined system can process video frames with 10 cows' faces, localize their faces, and correctly classify their identities in less than 20 ms per frame. Thus, up to 50 frames per second video files can be processed with our system in real-time at a dairy farm. Our method efficiently performs real-time facial detection and recognition on multiple cow faces using deep neural networks, achieving a high precision in real-time operation. These qualities can make the proposed system a valuable tool for an automatic biometric cow recognition on farms.

Smart Dairy Farming-The Potential of the Automatic Monitoring of Dairy Cows' Behaviour Using a 360-Degree Camera

The aim of this study is to show the potential of a vision-based system using a single 360° camera to describe the dairy cows' behaviour in a free-stall barn with an automatic milking system. A total of 2299 snapshots were manually evaluated, counting the number of animals that were lying, standing and eating. The average capture rate of animals in the picture is 93.1% (counted animals/actual numbers of animals). In addition to determining the daily lying, standing and eating times, it is also possible to allocate animals to the individual functional areas so that anomalies such as prolonged standing in the cubicle or lying in the walkway can be detected at an early stage. When establishing a camera monitoring system in the future, attention should be paid to sufficient resolution of the camera during the night as well as the reduction of the concealment problem by animals and barn equipment. The automatic monitoring of animal behaviour with the help of 360° cameras can be a promising innovation in the dairy barn.

Research on Automatic Recognition of Dairy Cow Daily Behaviors Based on Deep Learning

Dairy cow behavior carries important health information. Timely and accurate detection of behaviors such as drinking, feeding, lying, and standing is meaningful for monitoring individual cows and herd management. In this study, a model called Res-DenseYOLO is proposed for accurately detecting the individual behavior of dairy cows living in cowsheds. Specifically, a dense module was integrated into the backbone network of YOLOv5 to strengthen feature extraction for actual cowshed environments. A CoordAtt attention mechanism and SioU loss function were added to enhance feature learning and training convergence. Multi-scale detection heads were designed to improve small target detection. The model was trained and tested on 5516 images collected from monitoring videos of a dairy cowshed. The experimental results showed that the performance of Res-DenseYOLO proposed in this paper is better than that of Fast-RCNN, SSD, YOLOv4, YOLOv7, and other detection models in terms of precision, recall, and mAP metrics. Specifically, Res-DenseYOLO achieved 94.7% precision, 91.2% recall, and 96.3% mAP, outperforming the baseline YOLOv5 model by 0.7%, 4.2%, and 3.7%, respectively. This research developed a useful solution for real-time and accurate detection of dairy cow behaviors with video monitoring only, providing valuable behavioral data for animal welfare and production management.

Assessing Decision Support Tools for Mitigating Tail Biting in Pork Production: Current Progress and Future Directions

Tail biting (TB) in pigs is a complex issue that can be caused by multiple factors, making it difficult to determine the exact etiology on a case-by-case basis. As such, it is often difficult to pinpoint the reason, or set of reasons, for TB events, Decision Support Tools (DSTs) can be used to identify possible risk factors of TB on farms and provide suitable courses of action. The aim of this review was to identify DSTs that could be used to predict the risk of TB behavior. Additionally, technologies that can be used to support DSTs, with monitoring and tracking the prevalence of TB behaviors, are reviewed. Using the PRISMA methodology to identify sources, the applied selection process found nine DSTs related to TB in pigs. All support tools relied on secondary information, either by way of the scientific literature or expert opinions, to determine risk factors for TB predictions. Only one DST was validated by external sources, seven were self-assessed by original developers, and one presented no evidence of validation. This analysis better understands the limitations of DSTs and highlights an opportunity for the development of DSTs that rely on objective data derived from the environment, animals, and humans simultaneously to predict TB risks. Moreover, an opportunity exists for the incorporation of monitoring technologies for TB detection into a DST.

Short communications: an ear-attached accelerometer detects effects of regrouping on lying, rumination, and activity times in calves

The objective of this study was to use a sensor-based accelerometer (ACC) to identify changes in lying, rumination, and activity times in weaned calves during the moving and regrouping process. Overall, 270 healthy Holstein calves (from approximately 16 regrouping events) at the age of approximately 4 months were enrolled and equipped with an ear-attached ACC (SMARTBOW, Smartbow GmbH/ Zoetis LLC). Sensor data were recorded for 5 d before (d -5) until 4 d after moving and regrouping (d 4). The day of regrouping was defined as d 0. Acceleration data were continuously processed by specific algorithms (developed by SMARTBOW) for lying, rumination, and activity. Lying, rumination, and activity times were averaged from d -5 to d -3 to generate a baseline value for each parameter. Parameters on d 0 to d 4 after regrouping were compared to this baseline. All parameters showed significant changes compared with the baseline at d 0. Significant decreases in rumination and inactive times were seen up to d 2. Lying time was significantly lower until d 3. The study results indicate that the ACC can be used to monitor the disruptive effects of regrouping on lying and rumination behaviors. Further research is necessary to elucidate how these changes have an impact on health, performance, and welfare and to evaluate how to reduce these potentially negative effects.

Using Sound Location to Monitor Farrowing in Sows

Precision Livestock Farming systems can help pig farmers prevent health and welfare issues around farrowing. Five sows were monitored in two field studies. A Sorama L642V sound camera, visualising sound sources as coloured spots using a 64-microphone array, and a Bascom XD10-4 security camera with a built-in microphone were used in a farrowing unit. Firstly, sound spots were compared with audible sounds, using the Observer XT (Noldus Information Technology), analysing video data at normal speed. This gave many false positives, including visible sound spots without audible sounds. In total, 23 of 50 piglet births were visible, but none were audible. The sow's behaviour changed when farrowing started. One piglet was silently crushed. Secondly, data were analysed at a 10-fold slower speed when comparing sound spots with audible sounds and sow behaviour. This improved results, but accuracy and specificity were still low. When combining audible sound with visible sow behaviour and comparing sound spots with combined sound and behaviour, the accuracy was 91.2%, the error was 8.8%, the sensitivity was 99.6%, and the specificity was 69.7%. We conclude that sound cameras are promising tools, detecting sound more accurately than the human ear. There is potential to use sound cameras to detect the onset of farrowing, but more research is needed to detect piglet births or crushing.

Nanotechnology and E-Sensing for Food Chain Quality and Safety

Nowadays, it is well known that sensors have an enormous impact on our life, using streams of data to make life-changing decisions. Every single aspect of our day is monitored via thousands of sensors, and the benefits we can obtain are enormous. With the increasing demand for food quality, food safety has become one of the main focuses of our society. However, fresh foods are subject to spoilage due to the action of microorganisms, enzymes, and oxidation during storage. Nanotechnology can be applied in the food industry to support packaged products and extend their shelf life. Chemical composition and sensory attributes are quality markers which require innovative assessment methods, as existing ones are rather difficult to implement, labour-intensive, and expensive. E-sensing devices, such as vision systems, electronic noses, and electronic tongues, overcome many of these drawbacks. Nanotechnology holds great promise to provide benefits not just within food products but also around food products. In fact, nanotechnology introduces new chances for innovation in the food industry at immense speed. This review describes the food application fields of nanotechnologies; in particular, metal oxide sensors (MOS) will be presented.

Opportunities for Regulatory Authorities to Assess Animal-Based Measures at the Slaughterhouse Using Sensor Technology and Artificial Intelligence: A Review

Animal-based measures (ABMs) are the preferred way to assess animal welfare. However, manual scoring of ABMs is very time-consuming during the meat inspection. Automatic scoring by using sensor technology and artificial intelligence (AI) may bring a solution. Based on review papers an overview was made of ABMs recorded at the slaughterhouse for poultry, pigs and cattle and applications of sensor technology to measure the identified ABMs. Also, relevant legislation and work instructions of the Dutch Regulatory Authority (RA) were scanned on applied ABMs. Applications of sensor technology in a research setting, on farm or at the slaughterhouse were reported for 10 of the 37 ABMs identified for poultry, 4 of 32 for cattle and 13 of 41 for pigs. Several applications are related to aspects of meat inspection. However, by European law meat inspection must be performed by an official veterinarian, although there are exceptions for the post mortem inspection of poultry. The examples in this study show that there are opportunities for using sensor technology by the RA to support the inspection and to give more insight into animal welfare risks. The lack of external validation for multiple commercially available systems is a point of attention.

Quantifying agonistic interactions between group-housed animals to derive social hierarchies using computer vision: a case study with commercially group-housed rabbits

In recent years, computer vision has contributed significantly to the study of farm animal behavior. In complex environments such as commercial farms, however, the automated detection of social behavior and specific interactions between animals can be improved. The present study addresses the automated detection of agonistic interactions between caged animals in a complex environment, relying solely on computer vision. An automated pipeline including group-level temporal action segmentation, object detection, object tracking and rule-based action classification for the detection of agonistic interactions was developed and extensively validated at a level unique in the field. Comparing with observations made by human observers, our pipeline reaches 77% precision and 85% recall using a 5-min tolerance interval for the detection of agonistic interactions. Results obtained using this pipeline allow to construct time-dependent socio-matrices of a group of animals and derive metrics on the dominance hierarchy in a semi-automated manner. Group-housed breeding rabbits (does) with their litters in commercial farms are the main use-case in this work, but the idea is probably also applicable to other social farm animals.

Selection for social genetic effects in purebred pigs improves behaviour and handling of their crossbred progeny

BACKGROUND

In commercial pig production, reduction of harmful social behavioural traits, such as ear manipulation and tail biting, is of major interest. Moreover, farmers prefer animals that are easy to handle. The aim of this experiment was to determine whether selection on social breeding values (SBV) for growth rate in purebred pigs affects behaviour in a weighing crate, lesions from ear manipulation, and tail biting of their crossbred progeny. Data were collected on crossbred F1 pigs allocated to 274 pens, which were progeny of purebred Landrace sows and Yorkshire boars from a DanBred nucleus herd.

RESULTS

Behaviour in the weighing crate scored on a three-level scale showed that groups of pigs with high SBV for growth rate were significantly calmer than groups of pigs with low SBV (P < 0.027). When the mean SBV in the group increased by 1 unit, the proportion of pigs that obtained a calmer score level was increased by 14%. A significant (p = 0.04), favourable effect of SBV was found on both the number of pigs with ear lesions in the group and the mean number of ear lesions per pig. For a 1 unit increase in mean SBV, the mean number of lesions per pig decreased by 0.06 from a mean of 0.98. Individual severity of ear lesions conditional upon the number of ear lesions was also significantly affected (p = 0.05) by the mean SBV in the group. In groups for which the mean SBV increased by 1 unit, the proportion of pigs that were observed with a lower severity score was increased by 20% on a three-level scale. Most pigs received no tail biting injuries and no effect of SBV was observed on the tail injury score.

CONCLUSIONS

After 7 weeks in the finisher unit, crossbred progeny with high SBV were calmer in the weighing crate and had fewer ear lesions. These results indicate that selection of purebred parents for SBV for growth rate will increase welfare in their crossbred progeny by decreasing the number of ear lesions and making them easier to handle.

Group level and individual activity of broiler chickens hatched in 3 different systems

Information on the behavior of chickens hatched in different systems is limited and inconsistent across different studies. Changes in broiler activity can be measured automatically and continuously. The aim of this study was to assess the effects of 3 hatching systems on flock activity using a commercial tracking system, and to compare these findings to individual activity measured under experimental conditions. As this experiment was part of a larger study, it was possible to investigate the effects of vaccination on individual activity. In study 1, flock activity was measured in chickens that hatched either conventionally in the hatchery (HH), in a system which provided nutrition in the hatcher (HF), or on-farm (OH). Chickens were reared in 2 batches, in 12 pens/batch (1,155 animals/pen). One camera recorded top-view images of each pen. A daily activity index (moved pixels/total pixels × 100) was calculated by automated image analysis. In study 2, individual activity was measured under experimental conditions using an ultra-wideband (UWB) system. Chickens from the 3 hatching systems were reared in 3 pens (1 pen/treatment, 30 animals/pen). At d14, UWB-tags were attached to 5 chickens/pen, which tracked the distances moved (DM). In study 1, group level activity showed a significant age × hatching system interaction (F8,752= 5.83, P < 0.001). HH and HF chickens showed higher activity levels than OH chickens in wk 1, 4, and 5. In wk 3, higher activity levels were measured in HH compared to HF, and in HF compared to OH pens. In contrast, HH chickens in small groups in study 2 showed lower DM than HF and OH chickens in wk 3 (P < 0.001). DM did not differ between treatments before vaccination, however, thereafter, HH chickens showed longer DM, whereas HF and OH chickens moved less. The results indicate that hatching system affected broiler activity at specific ages. Effects found at flock level could not be reproduced by individual measurements in study 2, although stocking density was comparable.

A workflow for automatic, high precision livestock diagnostic screening of locomotor kinematics

Locomotor kinematics have been challenging inputs for automated diagnostic screening of livestock. Locomotion is a highly variable behavior, and influenced by subject characteristics (e.g., body mass, size, age, disease). We assemble a set of methods from different scientific disciplines, composing an automatic, high through-put workflow which can disentangle behavioral complexity and generate precise individual indicators of non-normal behavior for application in diagnostics and research. For this study, piglets (Sus domesticus) were filmed from lateral perspective during their first 10 h of life, an age at which maturation is quick and body mass and size have major consequences for survival. We then apply deep learning methods for point digitization, calculate joint angle profiles, and apply information-preserving transformations to retrieve a multivariate kinematic data set. We train probabilistic models to infer subject characteristics from kinematics. Model accuracy was validated for strides from piglets of normal birth weight (i.e., the category it was trained on), but the models infer the body mass and size of low birth weight (LBW) piglets (which were left out of training, out-of-sample inference) to be "normal." The age of some (but not all) low birth weight individuals was underestimated, indicating developmental delay. Such individuals could be identified automatically, inspected, and treated accordingly. This workflow has potential for automatic, precise screening in livestock management.

Passive radio frequency identification and video tracking for the determination of location and movement of broilers

Phenotypes on individual animals are required for breeding programs to be able to select for traits. However, phenotyping individual animals can be difficult and time-consuming, especially for traits related to health, welfare, and performance. Individual broiler behavior could serve as a proxy for these traits when recorded automatically and reliably on many animals. Sensors could record individual broiler behavior, yet different sensors can differ in their assessment. In this study a comparison was made between a passive radio frequency identification (RFID) system (grid of antennas underneath the pen) and video tracking for the determination of location and movement of 3 color-marked broilers at d 18. Furthermore, a systems comparison of derived behavioral metrics such as space usage, locomotion activity and apparent feeding and drinking behavior was made. Color-marked broilers simplified the computer vision task for YOLOv5 to detect, track, and identify the animals. Animal locations derived from the RFID-system and based on video were largely in agreement. Most location differences (77.5%) were within the mean radius of the antennas' enclosing circle (≤128 px, 28.15 cm), and 95.3% of the differences were within a one antenna difference (≤256 px, 56.30 cm). Animal movement was not always registered by the RFID-system whereas video was sensitive to detection noise and the animal's behavior (e.g., pecking). The method used to determine location and the systems' sensitivities to movement led to differences in behavioral metrics. Behavioral metrics derived from video are likely more accurate than RFID-system derived behavioral metrics. However, at present, only the RFID-system can provide individual identification for non-color marked broilers. A combination of verifiable and detailed video with the unique identification of RFID could make it possible to identify, describe, and quantify a wide range of individual broiler behaviors.

Tracking Floor Eggs with Machine Vision in Cage-free Hen Houses

Some of the major restaurants and grocery chains in the United States have pledged to buy cage-free (CF) eggs only by 2025 or 2030. While CF house allows hens to perform more natural behaviors (e.g., dust bathing, perching, and foraging on the litter floor), a particular challenge is floor eggs (i.e., mislaid eggs on litter floor). Floor eggs have high chances of contamination. The manual collection of eggs is laborious and time-consuming. Therefore, precision poultry farming technology is necessary to detect floor eggs. In this study, 3 new deep learning models, that is, YOLOv5s-egg, YOLOv5x-egg, and YOLOv7-egg networks, were developed, trained, and compared in tracking floor eggs in 4 research cage-free laying hen facilities. Models were verified to detect eggs by using images collected in 2 different commercial houses. Results indicate that the YOLOv5s-egg model detected floor eggs with a precision of 87.9%, recall of 86.8%, and mean average precision (mAP) of 90.9%; the YOLOv5x-egg model detected the floor eggs with a precision of 90%, recall of 87.9%, and mAP of 92.1%; and the YOLOv7-egg model detected the eggs with a precision of 89.5%, recall of 85.4%, and mAP of 88%. All models performed with over 85% detection precision; however, model performance is affected by the stocking density, varying light intensity, and images occluded by equipment like drinking lines, perches, and feeders. The YOLOv5x-egg model detected floor eggs with higher accuracy, precision, mAP, and recall than YOLOv5s-egg and YOLOv7-egg. This study provides a reference for cage-free producers that floor eggs can be monitored automatically. Future studies are guaranteed to test the system in commercial houses.

Automatic measurement and prediction of Chinese Grown Pigs weight using multilayer perceptron neural networks

The knowledge of body size/weight is necessary for the general growth enhancement of swine as well as for making informed decisions that concern their health, productivity, and yield. Therefore, this work aims to automate the collection of pigs' body parameters using images from Kinect V2 cameras, and the development of Multilayer Perceptron Neural Network (MLP NN) models to predict their weight. The dataset obtained using 3D light depth cameras contains 9980 pigs across the S21 and S23 breeds, and then grouped into 70:15:15 training, testing, and validation sets, respectively. Initially, two MLP models were built and evaluations revealed that model 1 outperformed model 2 in predicting pig weights, with root mean squared error (RMSE) values of 5.5 and 6.0 respectively. Moreover, employing a normalized dataset, two new models (3 and 4) were developed and trained. Subsequently, models 2, 3, and 4 performed significantly better with a RMSE value of 5.29 compared to model 1, which has a RMSE value of 6.95. Model 3 produced an intriguing discovery i.e. accurate forecasting of pig weights using just two characteristics, age and abdominal circumference, and other error values show corresponding results.

Real-Time Measurement of the Daily Total Locomotor Behavior in Calves Reared in an Intensive Management System for the Possible Application in Precision Livestock Farming

Housing confinement, adaptation to different light/dark conditions, and social deprivation could modify the amount of total locomotor behavior of calves recommended for their psychophysical health. Total locomotor behavior was recorded by means of an activity data logger every 5 min for 6 consecutive days. To do that eight clinically healthy 30-day-old Holstein calves living in calf boxes under natural photoperiod and environmental conditions were enrolled. ANOVA (analysis of variance) showed a statistical effect of the day of monitoring and animal. In the temporal distribution of the resting-activity frequency, it was observed that the calves presented periods of total locomotor behavior with the existence of two peaks, one between 06:00-07:00 and another between 17:00-18:00, which corresponds to time of food intake. In all animals, a diurnal daily rhythm of total locomotor behavior was observed during time of monitoring. Intrasubject and intersubject variabilities were statistically different in mesor, amplitude, and robustness of rhythm. In conclusion, the total locomotor behavior showed a diurnal daily rhythmicity in 30-day-old calves. The characteristics of rhythm were different from individual to individual and from day to day. The recorded intersubject variability must be taken in consideration during the monitoring of farm animals and justifies the application of the device to each animal, as precision livestock farming suggests.

Invited review: integration of technologies and systems for precision animal agriculture-a case study on precision dairy farming

Precision livestock farming (PLF) offers a strategic solution to enhance the management capacity of large animal groups, while simultaneously improving profitability, efficiency, and minimizing environmental impacts associated with livestock production systems. Additionally, PLF contributes to optimizing the ability to manage and monitor animal welfare while providing solutions to global grand challenges posed by the growing demand for animal products and ensuring global food security. By enabling a return to the "per animal" approach by harnessing technological advancements, PLF enables cost-effective, individualized care for animals through enhanced monitoring and control capabilities within complex farming systems. Meeting the nutritional requirements of a global population exponentially approaching ten billion people will likely require the density of animal proteins for decades to come. The development and application of digital technologies are critical to facilitate the responsible and sustainable intensification of livestock production over the next several decades to maximize the potential benefits of PLF. Real-time continuous monitoring of each animal is expected to enable more precise and accurate tracking and management of health and well-being. Importantly, the digitalization of agriculture is expected to provide collateral benefits of ensuring auditability in value chains while assuaging concerns associated with labor shortages. Despite notable advances in PLF technology adoption, a number of critical concerns currently limit the viability of these state-of-the-art technologies. The potential benefits of PLF for livestock management systems which are enabled by autonomous continuous monitoring and environmental control can be rapidly enhanced through an Internet of Things approach to monitoring and (where appropriate) closed-loop management. In this paper, we analyze the multilayered network of sensors, actuators, communication, networking, and analytics currently used in PLF, focusing on dairy farming as an illustrative example. We explore the current state-of-the-art, identify key shortcomings, and propose potential solutions to bridge the gap between technology and animal agriculture. Additionally, we examine the potential implications of advancements in communication, robotics, and artificial intelligence on the health, security, and welfare of animals.

Measuring Comfort Behaviours in Laying Hens Using Deep-Learning Tools

Image analysis using machine learning (ML) algorithms could provide a measure of animal welfare by measuring comfort behaviours and undesired behaviours. Using a PLF technique based on images, the present study aimed to test a machine learning tool for measuring the number of hens on the ground and identifying the number of dust-bathing hens in an experimental aviary. In addition, two YOLO (You Only Look Once) models were compared. YOLOv4-tiny needed about 4.26 h to train for 6000 epochs, compared to about 23.2 h for the full models of YOLOv4. In validation, the performance of the two models in terms of precision, recall, harmonic mean of precision and recall, and mean average precision (mAP) did not differ, while the value of frame per second was lower in YOLOv4 compared to the tiny version (31.35 vs. 208.5). The mAP stands at about 94% for the classification of hens on the floor, while the classification of dust-bathing hens was poor (28.2% in the YOLOv4-tiny compared to 31.6% in YOLOv4). In conclusion, ML successfully identified laying hens on the floor, whereas other PLF tools must be tested for the classification of dust-bathing hens.

Improving the Reliability of Scale-Free Image Morphometrics in Applications with Minimally Restrained Livestock Using Projective Geometry and Unsupervised Machine Learning

Advances in neural networks have garnered growing interest in applications of machine vision in livestock management, but simpler landmark-based approaches suitable for small, early stage exploratory studies still represent a critical stepping stone towards these more sophisticated analyses. While such approaches are well-validated for calibrated images, the practical limitations of such imaging systems restrict their applicability in working farm environments. The aim of this study was to validate novel algorithmic approaches to improving the reliability of scale-free image biometrics acquired from uncalibrated images of minimally restrained livestock. Using a database of 551 facial images acquired from 108 dairy cows, we demonstrate that, using a simple geometric projection-based approach to metric extraction, a priori knowledge may be leveraged to produce more intuitive and reliable morphometric measurements than conventional informationally complete Euclidean distance matrix analysis. Where uncontrolled variations in image annotation, camera position, and animal pose could not be fully controlled through the design of morphometrics, we further demonstrate how modern unsupervised machine learning tools may be used to leverage the systematic error structures created by such lurking variables in order to generate bias correction terms that may subsequently be used to improve the reliability of downstream statistical analyses and dimension reduction.

Seeing is caring – automated assessment of resource use of broilers with computer vision techniques

Routine monitoring of broiler chickens provides insights in the welfare status of a flock, helps to guarantee minimum defined levels of animal welfare and assists farmers in taking remedial measures at an early stage. Computer vision techniques offer exciting potential for routine and automated assessment of broiler welfare, providing an objective and biosecure alternative to the current more subjective and time-consuming methods. However, the current state-of-the-art computer vision solutions for assessing broiler welfare are not sufficient to allow the transition to fully automated monitoring in a commercial environment. Therefore, the aim of this study was to investigate the potential of computer vision algorithms for detection and resource use monitoring of broilers housed in both experimental and commercial settings, while also assessing the potential for scalability and resource-efficient implementation of such solutions. This study used a combination of detection and resource use monitoring methods, where broilers were first detected using Mask R-CNN and were then assigned to a specific resource zone using zone-based classifiers. Three detection models were proposed using different annotation datasets: model A with annotated broilers from a research facility, model B with annotated broilers from a commercial farm, and model A+B where annotations from both environments were combined. The algorithms developed for individual broiler detection performed well for both the research facility (model A, F1 score &gt; 0.99) and commercial farm (model A+B, F1 score &gt; 0.83) test data with an intersection over union of 0.75. The subsequent monitoring of resource use at the commercial farm using model A+B for broiler detection, also performed very well for the feeders, bale and perch (F1 score &gt; 0.93), but not for the drinkers (F1 score = 0.28), which was likely caused by our evaluation method. Thus, the algorithms used in this study are a first step to measure resource use automatically in commercial application and allow detection of a large number of individual animals in a non-invasive manner. From location data of every frame, resource use can be calculated. Ultimately, the broiler detection and resource use monitoring might further be used to assess broiler welfare.

Dairy 4.0: Intelligent Communication Ecosystem for the Cattle Animal Welfare with Blockchain and IoT Enabled Technologies

An intelligent ecosystem with real-time wireless technology is now playing a key role in meeting the sustainability requirements set by the United Nations. Dairy cattle are a major source of milk production all over the world. To meet the food demand of the growing population with maximum productivity, it is necessary for dairy farmers to adopt real-time monitoring technologies. In this study, we will be exploring and assimilating the limitless possibilities for technological interventions in dairy cattle to drastically improve their ecosystem. Intelligent systems for sensing, monitoring, and methods for analysis to be used in applications such as animal health monitoring, animal location tracking, milk quality, and supply chain, feed monitoring and safety, etc., have been discussed briefly. Furthermore, generalized architecture has been proposed that can be directly applied in the future for breakthroughs in research and development linked to data gathering and the processing of applications through edge devices, robots, drones, and blockchain for building intelligent ecosystems. In addition, the article discusses the possibilities and challenges of implementing previous techniques for different activities in dairy cattle. High computing power-based wearable devices, renewable energy harvesting, drone-based furious animal attack detection, and blockchain with IoT assisted systems for the milk supply chain are the vital recommendations addressed in this study for the effective implementation of the intelligent ecosystem in dairy cattle.

ASAS-NANP symposium: mathematical modeling in animal nutrition: limitations and potential next steps for modeling and modelers in the animal sciences

The field of animal science, and especially animal nutrition, relies heavily on modeling to accomplish its day-to-day objectives. New data streams ("big data") and the exponential increase in computing power have allowed the appearance of "new" modeling methodologies, under the umbrella of artificial intelligence (AI). However, many of these modeling methodologies have been around for decades. According to Gartner, technological innovation follows five distinct phases: technology trigger, peak of inflated expectations, trough of disillusionment, slope of enlightenment, and plateau of productivity. The appearance of AI certainly elicited much hype within agriculture leading to overpromised plug-and-play solutions in a field heavily dependent on custom solutions. The threat of failure can become real when advertising a disruptive innovation as sustainable. This does not mean that we need to abandon AI models. What is most necessary is to demystify the field and place a lesser emphasis on the technology and more on business application. As AI becomes increasingly more powerful and applications start to diverge, new research fields are introduced, and opportunities arise to combine "old" and "new" modeling technologies into hybrids. However, sustainable application is still many years away, and companies and universities alike do well to remain at the forefront. This requires investment in hardware, software, and analytical talent. It also requires a strong connection to the outside world to test, that which does, and does not work in practice and a close view of when the field of agriculture is ready to take its next big steps. Other research fields, such as engineering and automotive, have shown that the application power of AI can be far reaching but only if a realistic view of models as whole is maintained. In this review, we share our view on the current and future limitations of modeling and potential next steps for modelers in the animal sciences. First, we discuss the inherent dependencies and limitations of modeling as a human process. Then, we highlight how models, fueled by AI, can play an enhanced sustainable role in the animal sciences ecosystem. Lastly, we provide recommendations for future animal scientists on how to support themselves, the farmers, and their field, considering the opportunities and challenges the technological innovation brings.

Twelve Threats of Precision Livestock Farming (PLF) for Animal Welfare

Research and development of Precision Livestock Farming (PLF) is booming, partly due to hopes and claims regarding the benefits of PLF for animal welfare. These claims remain largely unproven, however, as only few PLF technologies focusing on animal welfare have been commercialized and adopted in practice. The prevailing enthusiasm and optimism about PLF innovations may be clouding the perception of possible threats that PLF may pose to farm animal welfare. Without claiming to be exhaustive, this paper lists 12 potential threats grouped into four categories: direct harm, indirect harm via the end-user, via changes to housing and management, and via ethical stagnation or degradation. PLF can directly harm the animals because of (1) technical failures, (2) harmful effects of exposure, adaptation or wearing of hardware components, (3) inaccurate predictions and decisions due to poor external validation, and (4) lack of uptake of the most meaningful indicators for animal welfare. PLF may create indirect effects on animal welfare if the farmer or stockperson (5) becomes under- or over-reliant on PLF technology, (6) spends less (quality) time with the animals, and (7) loses animal-oriented husbandry skills. PLF may also compromise the interests of the animals by creating transformations in animal farming so that the housing and management are (8) adapted to optimize PLF performance or (9) become more industrialized. Finally, PLF may affect the moral status of farm animals in society by leading to (10) increased speciesism, (11) further animal instrumentalization, and (12) increased animal consumption and harm. For the direct threats, possibilities for prevention and remedies are suggested. As the direction and magnitude of the more indirect threats are harder to predict or prevent, they are more difficult to address. In order to maximize the potential of PLF for improving animal welfare, the potential threats as well as the opportunities should be acknowledged, monitored and addressed.

Bird Welfare in Zoos and Aquariums: General Insights across Industries

Animal welfare is a priority across accredited zoological institutions; however, historically, research has been prioritized for mammals. Bird-focused studies accounted for less than 10% of welfare research in zoos and aquariums over the last ten years. Due to the lack of scientific publications on bird welfare, zoo scientists and animal practitioners can look to other industries such as agriculture, laboratories, and companion animal research for insight. This qualitative review highlights findings across industries to inform animal care staff and scientists on the welfare needs of birds within zoos and aquariums. Specifically, the review includes an overview of research on different topics and a summary of key findings across nine resources that affect bird welfare. We also highlight areas where additional research is necessary. Future welfare research in zoos and aquariums should prioritize studies that consider a diversity of bird species across topics and work to identify animal-based measures with empirical evidence. Moving forward, research from other industries can help develop innovative research on bird welfare within zoos and aquariums.

Caught on Camera: On the Need of Responsible Use of Video Observation for Animal Behavior and Welfare Research

Video analysis is a popular and frequently used tool in animal behavior and welfare research. In addition to the actual object of research, video recordings often provide unforeseen information about the progress of the study, the animals or the people involved. Conflicts can arise when this information is weighed against the original intention of the recordings and broader social expectations. Uncertainty may prevent the video observers, often less experienced researchers, to properly address these conflicts, which can pose a threat to animal welfare and research quality and integrity. In this article, we aim to raise awareness of the interrelationship of variables characteristic for video-based animal studies and the potential conflicts emerging from this. We propose stepping stones for a framework which enables a culture of openness in dealing with unexpected and unintended events observed during video analysis. As a basis, a frame of reference regarding privacy and duty of care toward animals should be created and shared with all persons involved. At this stage, expectations and responsibilities need to be made explicit. During running and reporting of the study, the risk of animal welfare and research integrity issues can be mitigated by making conflicts discussible and offering realistic opportunities on how to deal with them. A practice which is outlined and guided by conversation will prevent a mere compliance-based approach centered on checklists and decision trees. Based on these stepping stones, educational material can be produced to foster reflection, co-creation and application of ethical practice.

Applications of Smart Technology as a Sustainable Strategy in Modern Swine Farming

The size of the pork market is increasing globally to meet the demand for animal protein, resulting in greater farm size for swine and creating a great challenge to swine farmers and industry owners in monitoring the farm activities and the health and behavior of the herd of swine. In addition, the growth of swine production is resulting in a changing climate pattern along with the environment, animal welfare, and human health issues, such as antimicrobial resistance, zoonosis, etc. The profit of swine farms depends on the optimum growth and good health of swine, while modern farming practices can ensure healthy swine production. To solve these issues, a future strategy should be considered with information and communication technology (ICT)-based smart swine farming, considering auto-identification, remote monitoring, feeding behavior, animal rights/welfare, zoonotic diseases, nutrition and food quality, labor management, farm operations, etc., with a view to improving meat production from the swine industry. Presently, swine farming is not only focused on the development of infrastructure but is also occupied with the application of technological knowledge for designing feeding programs, monitoring health and welfare, and the reproduction of the herd. ICT-based smart technologies, including smart ear tags, smart sensors, the Internet of Things (IoT), deep learning, big data, and robotics systems, can take part directly in the operation of farm activities, and have been proven to be effective tools for collecting, processing, and analyzing data from farms. In this review, which considers the beneficial role of smart technologies in swine farming, we suggest that smart technologies should be applied in the swine industry. Thus, the future swine industry should be automated, considering sustainability and productivity.

Automated Individual Cattle Identification Using Video Data: A Unified Deep Learning Architecture Approach

Individual cattle identification is a prerequisite and foundation for precision livestock farming. Existing methods for cattle identification require radio frequency or visual ear tags, all of which are prone to loss or damage. Here, we propose and implement a new unified deep learning approach to cattle identification using video analysis. The proposed deep learning framework is composed of a Convolutional Neural Network (CNN) and Bidirectional Long Short-Term Memory (BiLSTM) with a self-attention mechanism. More specifically, the Inception-V3 CNN was used to extract features from a cattle video dataset taken in a feedlot with rear-view. Extracted features were then fed to a BiLSTM layer to capture spatio-temporal information. Then, self-attention was employed to provide a different focus on the features captured by BiLSTM for the final step of cattle identification. We used a total of 363 rear-view videos from 50 cattle at three different times with an interval of 1 month between data collection periods. The proposed method achieved 93.3% identification accuracy using a 30-frame video length, which outperformed current state-of-the-art methods (Inception-V3, MLP, SimpleRNN, LSTM, and BiLSTM). Furthermore, two different attention schemes, namely, additive and multiplicative attention mechanisms were compared. Our results show that the additive attention mechanism achieved 93.3% accuracy and 91.0% recall, greater than multiplicative attention mechanism with 90.7% accuracy and 87.0% recall. Video length also impacted accuracy, with video sequence length up to 30-frames enhancing identification performance. Overall, our approach can capture key spatio-temporal features to improve cattle identification accuracy, enabling automated cattle identification for precision livestock farming.

Changes in tail posture detected by a 3D machine vision system are associated with injury from damaging behaviours and ill health on commercial pig farms

To establish whether pig tail posture is affected by injuries and ill health, a machine vision system using 3D cameras to measure tail angle was used. Camera data from 1692 pigs in 41 production batches of 42.4 (±16.6) days in length over 17 months at seven diverse grower/finisher commercial pig farms, was validated by visiting farms every 14(±10) days to score injury and ill health. Linear modelling of tail posture found considerable farm and batch effects. The percentage of tails held low (0°) or mid (1-45°) decreased over time from 54.9% and 23.8% respectively by -0.16 and -0.05%/day, while tails high (45-90°) increased from 21.5% by 0.20%/day. Although 22% of scored pigs had scratched tails, severe tail biting was rare; only 6% had tail wounds and 5% partial tail loss. Adding tail injury to models showed associations with tail posture: overall tail injury, worsening tail injury, and tail loss were associated with more pigs detected with low tail posture and fewer with high tails. Minor tail injuries and tail swelling were also associated with altered tail posture. Unexpectedly, other health and injury scores had a larger effect on tail posture- more low tails were observed when a greater proportion of pigs in a pen were scored with lameness or lesions caused by social aggression. Ear injuries were linked with reduced high tails. These findings are consistent with the idea that low tail posture could be a general indicator of poor welfare. However, effects of flank biting and ocular discharge on tail posture were not consistent with this. Our results show for the first time that perturbations in the normal time trends of tail posture are associated with tail biting and other signs of adverse health/welfare at diverse commercial farms, forming the basis for a decision support system.

Does Smart Farming Improve or Damage Animal Welfare? Technology and What Animals Want

“Smart” or “precision” farming has revolutionized crop agriculture but its application to livestock farming has raised ethical concerns because of its possible adverse effects on animal welfare. With rising public concern for animal welfare across the world, some people see the efficiency gains offered by the new technology as a direct threat to the animals themselves, allowing producers to get “more for less” in the interests of profit. Others see major welfare advantages through life-long health monitoring, delivery of individual care and optimization of environmental conditions. The answer to the question of whether smart farming improves or damages animal welfare is likely to depend on three main factors. Firstly, much will depend on how welfare is defined and the extent to which politicians, scientists, farmers and members of the public can agree on what welfare means and so come to a common view on how to judge how it is impacted by technology. Defining welfare as a combination of good health and what the animals themselves want provides a unifying and animal-centered way forward. It can also be directly adapted for computer recognition of welfare. A second critical factor will be whether high welfare standards are made a priority within smart farming systems. To achieve this, it will be necessary both to develop computer algorithms that can recognize welfare to the satisfaction of both the public and farmers and also to build good welfare into the control and decision-making of smart systems. What will matter most in the end, however, is a third factor, which is whether smart farming can actually deliver its promised improvements in animal welfare when applied in the real world. An ethical evaluation will only be possible when the new technologies are more widely deployed on commercial farms and their full social, environmental, financial and welfare implications become apparent.

Estrus Detection Using Background Image Subtraction Technique in Tie-Stalled Cows

Simple Summary

With increasing herd sizes and labor costs in recent decades, visual estrus detection by farmers has become more difficult because of the reduced manpower input per cow. To address this problem, various wearable devices have been developed for automatic estrus detection in cows, such as neck- or leg-mounted activity meters for monitoring estrus-associated increments in the amount of activity. However, these animal-contact devices have several limitations; namely, it can be dangerous to attach or remove the device and it can cause discomfort. Recently, a background image subtraction technique has been proposed as a non-contact method for monitoring activity changes in livestock animals. In this study, a new method was developed by combining the background subtraction technique and the thresholding method to detect estrus-associated activity increases in tie-stalled cows. Using this method, a substantial increase in activity in estrus was detectable, and the estrus detection sensitivity reached as high as 90% with a precision of 50%, where the sensitivity and precision were calculated as: (true-positive/[true-positive + false-negative]) × 100% and (true-positive/[true-positive + false-positive]) × 100%, respectively. This result may indicate that activity monitoring using the background subtraction technique has the potential to be a non-contact estrus detection method in tie-stalled cows.

Abstract

In this study, we determined the applicability of the background image subtraction technique to detect estrus in tie-stalled cows. To investigate the impact of the camera shooting direction, webcams were set up to capture the front, top, and rear views of a cow simultaneously. Video recording was performed for a total of ten estrous cycles in six cows. Standing estrus was confirmed by testing at 6 h intervals. From the end of estrus, transrectal ultrasonography was performed every 2 h to confirm ovulation time. Foreground objects (moving objects) were extracted in the videos using the background subtraction technique, and the pixels were counted at each frame of five frames-per-second sequences. After calculating the hourly averaged pixel counts, the change in values was expressed as the pixel ratio (total value during the last 24 h/total value during the last 24 to 48 h). The mean pixel ratio gradually increased at approximately 48 h before ovulation, and the highest value was observed at estrus, regardless of the camera shooting direction. When using front-view videos with an appropriate threshold, estrus was detected with 90% sensitivity and 50% precision. The present method in particular has the potential to be a non-contact estrus detection method for tie-stalled cows.

A Systematic Review on Validated Precision Livestock Farming Technologies for Pig Production and Its Potential to Assess Animal Welfare

Several precision livestock farming (PLF) technologies, conceived for optimizing farming processes, are developed to detect the physical and behavioral changes of animals continuously and in real-time. The aim of this review was to explore the capacity of existing PLF technologies to contribute to the assessment of pig welfare. In a web search for commercially available PLF for pigs, 83 technologies were identified. A literature search was conducted, following systematic review guidelines (PRISMA), to identify studies on the validation of sensor technologies for assessing animal-based welfare indicators. Two validation levels were defined: internal (evaluation during system building within the same population that were used for system building) and external (evaluation on a different population than during system building). From 2,463 articles found, 111 were selected, which validated some PLF that could be applied to the assessment of animal-based welfare indicators of pigs (7% classified as external, and 93% as internal validation). From our list of commercially available PLF technologies, only 5% had been externally validated. The more often validated technologies were vision-based solutions (n = 45), followed by load-cells (n = 28; feeders and drinkers, force plates and scales), accelerometers (n = 14) and microphones (n = 14), thermal cameras (n = 10), photoelectric sensors (n = 5), radio-frequency identification (RFID) for tracking (n = 2), infrared thermometers (n = 1), and pyrometer (n = 1). Externally validated technologies were photoelectric sensors (n = 2), thermal cameras (n = 2), microphone (n = 1), load-cells (n = 1), RFID (n = 1), and pyrometer (n = 1). Measured traits included activity and posture-related behavior, feeding and drinking, other behavior, physical condition, and health. In conclusion, existing PLF technologies are potential tools for on-farm animal welfare assessment in pig production. However, validation studies are lacking for an important percentage of market available tools, and in particular research and development need to focus on identifying the feature candidates of the measures (e.g., deviations from diurnal pattern, threshold levels) that are valid signals of either negative or positive animal welfare. An important gap identified are the lack of technologies to assess affective states (both positive and negative states).

Welfare Health and Productivity in Commercial Pig Herds

In recent years, there have been very dynamic changes in both pork production and pig breeding technology around the world. The general trend of increasing the efficiency of pig production, with reduced employment, requires optimisation and a comprehensive approach to herd management. One of the most important elements on the way to achieving this goal is to maintain animal welfare and health. The health of the pigs on the farm is also a key aspect in production economics. The need to maintain a high health status of pig herds by eliminating the frequency of different disease units and reducing the need for antimicrobial substances is part of a broadly understood high potential herd management strategy. Thanks to the use of sensors (cameras, microphones, accelerometers, or radio-frequency identification transponders), the images, sounds, movements, and vital signs of animals are combined through algorithms and analysed for non-invasive monitoring of animals, which allows for early detection of diseases, improves their welfare, and increases the productivity of breeding. Automated, innovative early warning systems based on continuous monitoring of specific physiological (e.g., body temperature) and behavioural parameters can provide an alternative to direct diagnosis and visual assessment by the veterinarian or the herd keeper.

Individual Detection and Tracking of Group Housed Pigs in Their Home Pen Using Computer Vision

Modern welfare definitions not only require that the Five Freedoms are met, but animals should also be able to adapt to changes (i. e., resilience) and reach a state that the animals experience as positive. Measuring resilience is challenging since relatively subtle changes in animal behavior need to be observed 24/7. Changes in individual activity showed potential in previous studies to reflect resilience. A computer vision (CV) based tracking algorithm for pigs could potentially measure individual activity, which will be more objective and less time consuming than human observations. The aim of this study was to investigate the potential of state-of-the-art CV algorithms for pig detection and tracking for individual activity monitoring in pigs. This study used a tracking-by-detection method, where pigs were first detected using You Only Look Once v3 (YOLOv3) and in the next step detections were connected using the Simple Online Real-time Tracking (SORT) algorithm. Two videos, of 7 h each, recorded in barren and enriched environments were used to test the tracking. Three detection models were proposed using different annotation datasets: a young model where annotated pigs were younger than in the test video, an older model where annotated pigs were older than the test video, and a combined model where annotations from younger and older pigs were combined. The combined detection model performed best with a mean average precision (mAP) of over 99.9% in the enriched environment and 99.7% in the barren environment. Intersection over Union (IOU) exceeded 85% in both environments, indicating a good accuracy of the detection algorithm. The tracking algorithm performed better in the enriched environment compared to the barren environment. When false positive tracks where removed (i.e., tracks not associated with a pig), individual pigs were tracked on average for 22.3 min in the barren environment and 57.8 min in the enriched environment. Thus, based on proposed tracking-by-detection algorithm, pigs can be tracked automatically in different environments, but manual corrections may be needed to keep track of the individual throughout the video and estimate activity. The individual activity measured with proposed algorithm could be used as an estimate to measure resilience.

A Systematic Review on Commercially Available and Validated Sensor Technologies for Welfare Assessment of Dairy Cattle

In order to base welfare assessment of dairy cattle on real-time measurement, integration of valid and reliable precision livestock farming (PLF) technologies is needed. The aim of this study was to provide a systematic overview of externally validated and commercially available PLF technologies, which could be used for sensor-based welfare assessment in dairy cattle. Following Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines, a systematic literature review was conducted to identify externally validated sensor technologies. Out of 1,111 publications initially extracted from databases, only 42 studies describing 30 tools (including prototypes) met requirements for external validation. Moreover, through market search, 129 different retailed technologies with application for animal-based welfare assessment were identified. In total, only 18 currently retailed sensors have been externally validated (14%). The highest validation rate was found for systems based on accelerometers (30% of tools available on the market have validation records), while the lower rates were obtained for cameras (10%), load cells (8%), miscellaneous milk sensors (8%), and boluses (7%). Validated traits concerned animal activity, feeding and drinking behavior, physical condition, and health of animals. The majority of tools were validated on adult cows. Non-active behavior (lying and standing) and rumination were the most often validated for the high performance. Regarding active behavior (e.g., walking), lower performance of tools was reported. Also, tools used for physical condition (e.g., body condition scoring) and health evaluation (e.g., mastitis detection) were classified in lower performance group. The precision and accuracy of feeding and drinking assessment varied depending on measured trait and used sensor. Regarding relevance for animal-based welfare assessment, several validated technologies had application for good health (e.g., milk quality sensors) and good feeding (e.g., load cells, accelerometers). Accelerometers-based systems have also practical relevance to assess good housing. However, currently available PLF technologies have low potential to assess appropriate behavior of dairy cows. To increase actors' trust toward the PLF technology and prompt sensor-based welfare assessment, validation studies, especially in commercial herds, are needed. Future research should concentrate on developing and validating PLF technologies dedicated to the assessment of appropriate behavior and tools dedicated to monitoring the health and welfare in calves and heifers.

Smart Feeding Unit for Measuring the Pecking Force in Farmed Broilers

Simple Summary

We present a novel method for assessing broiler pecking force data during feeding. The prototype consisted of a power supply unit with a data acquisition module, management software connected to a computer for data storage, and a video camera to verify the pecking force during signal processing. The acquisition, processing, and classification of the pecking force signal information were valuable during broilers’ feeding. The smart feeding unit (SFU) prototype was useful in the continuous generation of information that could be applied to evaluate the amount of pecking force and performance during the broilers’ growth.

Abstract

Feeding is one of the most critical processes in the broiler production cycle. A feeder can collect data of force signals and continuously transform it into information about birds’ feed intake and quickly permit more agile and more precise decision-making concerning the broiler farm’s production process. A smart feeding unit (SFU) prototype was developed to evaluate the broiler pecking force and average feed intake per pecking (g/min). The prototype consisted of a power supply unit with a data acquisition module, management software connected to a computer for data storage, and a video camera to verify the pecking force during signal processing. In the present study, seven male Cobb-500 broilers were raised in an experimental chamber to test and commission the prototype. The prototype consisted of a feeding unit (feeder) with a data acquisition module (amplifier), with real-time integration for testing and intuitive operation with Catman Easy software connected to a computer to obtain and store data from signals. The sampling of average feed intake per pecking per broiler (g) was conducted during the first minute of feeding, subtracting the amount of feed provided per the amount of feed consumed, including the count of pecking in the first minute of feeding. An equation was used for estimating the average feed intake per pecking per broiler (g). The results showed that the average broiler pecking force was 1.39 N, with a minimum value of 0.04 N and a maximum value of 7.29 N. The average feed intake per pecking (FIP) was 0.13 g, with an average of 173 peckings per minute. The acquisition, processing, and classification of signals in the pecking force information were valuable during broilers’ feeding. The smart feeding unit prototype for broilers was efficient in the continuous assessment of feed intake and can generate information for estimating broiler performance.

How to Improve Meat Quality and Welfare in Entire Male Pigs by Genetics

Simple Summary

Successful breeding of entire male pigs needs a better understanding of factors driving meat quality and behavior traits as entire male pigs have lower meat quality, including an occasional strong defect known as boar taint, and more aggressive and sexual behavior. The review provides an update on how genetic factors affecting boar taint compounds and aggressive behavior in male pigs with emphasis on application in selection.

Abstract

Giving up surgical castration is desirable to avoid pain during surgery but breeding entire males raises issues on meat quality, particularly on boar taint, and aggression. It has been known for decades that boar taint is directly related to sexual development in uncastrated male pigs. The proportion of tainted carcasses depends on many factors, including genetics. The selection of lines with a low risk of developing boar taint should be considered as the most desirable solution in the medium to long term. It has been evidenced that selection against boar taint is feasible, and has been set up in a balanced way in some pig populations to counterbalance potential unfavorable effects on reproductive performances. Selection against aggressive behaviors, though theoretically feasible, faces phenotyping challenges that compromise selection in practice. In the near future, new developments in modelization, automatic recording, and genomic data will help define breeding objectives to solve entire male meat quality and welfare issues.