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Lee S, Lee HY, Kang HJ, Seo YE, Lee JH, Choi D. Oomycete effector AVRblb2 targets cyclic nucleotide-gated channels through calcium sensors to suppress pattern-triggered immunity. THE NEW PHYTOLOGIST 2024; 241:1277-1291. [PMID: 38013595 DOI: 10.1111/nph.19430] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2023] [Accepted: 10/30/2023] [Indexed: 11/29/2023]
Abstract
Transient and rapid increase in cytosolic Ca2+ plays a crucial role in plant-pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI). Cyclic nucleotide-gated channels (CNGCs) have been implicated in mediating this Ca2+ influx; however, their regulatory mechanisms remain poorly understood. Here, we have found that AVRblb2 requires the calmodulin (CaM) and calmodulin-like (CML) proteins as co-factors to interact with the NbCNGCs, resulting in the formation of AVRblb2-CaM/CML-NbCNGCs complex. Furthermore, CaM and CML are dissociated from NbCNGC18 during PTI response to increase Ca2+ influx; however, Avrblb2 inhibits calcium channel activation by disrupting the release of CaM and CML from NbCNGC18. Following recognition of PAMP, NbCNGC18 forms active heteromeric channels with other NbCNGCs, which may give selectivity of CNGC complex against diverse signals for fine-tuning of cytosolic Ca2+ level to mediate appropriate responses. Silencing of multiple NbCNGCs compromised the function of AVRblb2 on the pathogenicity of Phytophthora infestans, confirming that AVRblb2 contributes to pathogen virulence by targeting CNGCs. Our findings provide new insights into the regulation of CNGCs in PTI and the role of pathogen effectors in manipulating host cell physiology to promote infection.
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Affiliation(s)
- Soeui Lee
- Plant Immunity Research Center, Plant Genomics and Breeding Institute, Seoul National University, Seoul, 08826, Korea
- Horticultural Biotechnology, Department of Agriculture, Forestry, and Bioresources, College of Agriculture and Life Science, Seoul National University, Seoul, 08826, Korea
| | - Hye-Young Lee
- Plant Immunity Research Center, Plant Genomics and Breeding Institute, Seoul National University, Seoul, 08826, Korea
| | - Hui Jeong Kang
- Plant Immunity Research Center, Plant Genomics and Breeding Institute, Seoul National University, Seoul, 08826, Korea
| | - Ye-Eun Seo
- Plant Immunity Research Center, Plant Genomics and Breeding Institute, Seoul National University, Seoul, 08826, Korea
- Horticultural Biotechnology, Department of Agriculture, Forestry, and Bioresources, College of Agriculture and Life Science, Seoul National University, Seoul, 08826, Korea
| | - Joo Hyun Lee
- Plant Immunity Research Center, Plant Genomics and Breeding Institute, Seoul National University, Seoul, 08826, Korea
| | - Doil Choi
- Plant Immunity Research Center, Plant Genomics and Breeding Institute, Seoul National University, Seoul, 08826, Korea
- Horticultural Biotechnology, Department of Agriculture, Forestry, and Bioresources, College of Agriculture and Life Science, Seoul National University, Seoul, 08826, Korea
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Ren W, Chen L. Integrated Transcriptome and Metabolome Analysis of Salinity Tolerance in Response to Foliar Application of β-Alanine in Cotton Seedlings. Genes (Basel) 2023; 14:1825. [PMID: 37761965 PMCID: PMC10531431 DOI: 10.3390/genes14091825] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 09/17/2023] [Accepted: 09/18/2023] [Indexed: 09/29/2023] Open
Abstract
Salinity is amongst the serious abiotic stresses cotton plants face, impairing crop productivity. Foliar application of β-alanine is employed to improve salt tolerance in various crops, but the exact mechanism behind it is not yet completely understood. An advanced line SDS-01 of upland cotton Gossypium hirsutum L. was utilized to determine its salt tolerance. Foliar treatment with the β-alanine solution at different concentrations was applied to the seedlings stressed with 0.8% NaCl solution. On the 10th day of treatment, samples were collected for transcriptome and metabolome analyses. β-alanine solution at a concentration of 25 mM was found to be the best treatment with the lowest mortality rate and highest plant height and above-ground biomass under salt stress. Both differentially expressed genes and accumulated metabolites analyses showed improved tolerance of treated seedlings. The photosynthetic efficiency improved in seedlings due to higher expression of photosynthesis-antenna proteins and activation of hormones signal transduction after treatment with β-alanine. Highly expressed transcription factors observed were MYB, HD-ZIP, ARF, MYC, EREB, DELLA, ABF, H2A, H4, WRKY, and HK involved in the positive regulation of salinity tolerance in β-alanine-treated seedlings. Furthermore, compared to the control, the high accumulation of polyamines, coumarins, organic acids, and phenolic compounds in the β-alanine-treated seedlings helped regulate cellular antioxidant (glutathione and L-Cysteine) production. Hence, to improve salt tolerance and productivity in cotton, foliar application of β-alanine at the seedling stage can be a valuable management practice.
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Affiliation(s)
- Wei Ren
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China;
- Fukang Station of Desert Ecology, Chinese Academy of Sciences, Fukang 831505, China
| | - Li Chen
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China;
- Fukang Station of Desert Ecology, Chinese Academy of Sciences, Fukang 831505, China
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3
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Silamparasan D, Chang IF, Jinn TL. Calcium-dependent protein kinase CDPK16 phosphorylates serine-856 of glutamate receptor-like GLR3.6 protein leading to salt-responsive root growth in Arabidopsis . FRONTIERS IN PLANT SCIENCE 2023; 14:1093472. [PMID: 36818849 PMCID: PMC9935832 DOI: 10.3389/fpls.2023.1093472] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Accepted: 01/23/2023] [Indexed: 06/18/2023]
Abstract
Calcium-permeable channels in the plasma membrane play vital roles in plant growth, development, and response to environmental stimuli. Arabidopsis possesses 20 glutamate receptor-like proteins that share similarities with animal ionotropic glutamate receptors and mediate Ca2+ influx in plants. Calcium-dependent protein kinases (CDPKs) phosphorylate serine (Ser)-860 of glutamate receptor-like (GLR)3.7 protein, which interacts with 14-3-3ω and plays an essential role in salt and abscisic acid response in Arabidopsis by modulating Ca2+ signaling. However, the significance of CDPK- mediated phosphorylation status of Ser residues of GLR3.6 with regard to the functioning of GLR3.6 remains to be elucidated. In this study, we performed an in vitro kinase assay using CDPK16 and peptides containing the 14-3-3ω interacting domain of GLR3.6. We showed that Ser861/862 of GLR3.6 are required for the interaction with 14-3-3ω and that Ser856 of GLR3.6 is specifically phosphorylated by CDPK16 but not by CDPK3 and CDPK34. In addition, the expression of GLR3.6 was quickly downregulated by salt stress, and plants of glr3.6 mutants and GLR3.6-overexpression lines presented shorter and longer root lengths, respectively, under normal growth conditions than Col. Overexpression of the GLR3.6-Ser856 to Ala mutation resulted in a less sensitive phenotype in response to salt stress similar to glr3.6. Our results indicated that the Ser861/862 residues of GLR3.6 are required for interaction with 14-3-3ω. Additionally, the phosphorylation status of Ser856 residue of GLR3.6, which is mediated specifically by CDPK16, regulates root growth in normal and salt stress and conditions.
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Affiliation(s)
| | - Ing-Feng Chang
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
- Department of Life Science, National Taiwan University, Taipei, Taiwan
| | - Tsung-Luo Jinn
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
- Department of Life Science, National Taiwan University, Taipei, Taiwan
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4
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Hartman MD, Rojas BE, Ferrero DML, Leyva A, Durán R, Iglesias AA, Figueroa CM. Phosphorylation of aldose-6-phosphate reductase from Prunus persica leaves. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 194:461-469. [PMID: 36508780 DOI: 10.1016/j.plaphy.2022.12.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Revised: 11/04/2022] [Accepted: 12/05/2022] [Indexed: 06/17/2023]
Abstract
Sugar-alcohols are major photosynthates in plants from the Rosaceae family. Expression of the gene encoding aldose-6-phosphate reductase (Ald6PRase), the critical enzyme for glucitol synthesis in rosaceous species, is regulated by physiological and environmental cues. Additionally, Ald6PRase is inhibited by small molecules (hexose-phosphates and inorganic orthophosphate) and oxidizing compounds. This work demonstrates that Ald6PRase from peach leaves is phosphorylated in planta at the N-terminus. We also show in vitro phosphorylation of recombinant Ald6PRase by a partially purified kinase extract from peach leaves containing Ca2+-dependent protein kinases (CDPKs). Moreover, phosphorylation of recombinant Ald6PRase was inhibited by hexose-phosphates, phosphoenolpyruvate and pyrophosphate. We further show that phosphorylation of recombinant Ald6PRase was maximal using recombinant CDPKs. Overall, our results suggest that phosphorylation could fine-tune the activity of Ald6PRase.
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Affiliation(s)
- Matías D Hartman
- Instituto de Agrobiotecnología del Litoral, UNL, CONICET, FBCB, Santa Fe, Argentina
| | - Bruno E Rojas
- Instituto de Agrobiotecnología del Litoral, UNL, CONICET, FBCB, Santa Fe, Argentina
| | - Danisa M L Ferrero
- Instituto de Agrobiotecnología del Litoral, UNL, CONICET, FBCB, Santa Fe, Argentina
| | - Alejandro Leyva
- Unidad de Bioquímica y Proteómica Analíticas, Instituto de Investigaciones Biológicas Clemente Estable and Institut Pasteur de Montevideo, Montevideo, Uruguay
| | - Rosario Durán
- Unidad de Bioquímica y Proteómica Analíticas, Instituto de Investigaciones Biológicas Clemente Estable and Institut Pasteur de Montevideo, Montevideo, Uruguay
| | - Alberto A Iglesias
- Instituto de Agrobiotecnología del Litoral, UNL, CONICET, FBCB, Santa Fe, Argentina
| | - Carlos M Figueroa
- Instituto de Agrobiotecnología del Litoral, UNL, CONICET, FBCB, Santa Fe, Argentina.
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Lee SK, Lee SM, Kim MH, Park SK, Jung KH. Genome-Wide Analysis of Cyclic Nucleotide-Gated Channel Genes Related to Pollen Development in Rice. PLANTS (BASEL, SWITZERLAND) 2022; 11:plants11223145. [PMID: 36432876 PMCID: PMC9692566 DOI: 10.3390/plants11223145] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Revised: 10/06/2022] [Accepted: 11/11/2022] [Indexed: 05/31/2023]
Abstract
In the angiosperm, pollen germinates and rapidly expands the pollen tube toward the ovule. This process is important for plant double fertilization and seed setting. It is well known that the tip-focused calcium gradient is essential for pollen germination and pollen tube growth. However, little is known about the Ca2+ channels that play a role in rice pollen germination and tube growth. Here, we divided the 16 cyclic nucleotide-gated channel (CNGC) genes from rice into five subgroups and found two subgroups (clades II and III) have pollen-preferential genes. Then, we performed a meta-expression analysis of all OsCNGC genes in anatomical samples and identified three pollen-preferred OsCNGCs (OsCNGC4, OsCNGC5, and OsCNGC8). The subcellular localization of these OsCNGC proteins is matched with their roles as ion channels on the plasma membrane. Unlike other OsCNGCs, these genes have a unique cis-acting element in the promoter. OsCNGC4 can act by forming a homomeric complex or a heteromeric complex with OsCNGC5 or OsCNGC8. In addition, it was suggested that they can form a multi-complex with Mildew Resistance Locus O (MLO) protein or other types of ion transporters, and that their expression can be modulated by Ruptured Pollen tube (RUPO) encoding receptor-like kinase. These results shed light on understanding the regulatory mechanisms of pollen germination and pollen tube growth through calcium channels in rice.
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Affiliation(s)
- Su-Kyoung Lee
- Graduate School of Green-Bio Science and Crop Biotech Institute, Kyung Hee University, Yongin 17104, Republic of Korea
| | - Soo-Min Lee
- Graduate School of Green-Bio Science and Crop Biotech Institute, Kyung Hee University, Yongin 17104, Republic of Korea
| | - Myung-Hee Kim
- School of Applied Biosciences, Kyungpook National University, Daegu 41566, Republic of Korea
| | - Soon-Ki Park
- School of Applied Biosciences, Kyungpook National University, Daegu 41566, Republic of Korea
| | - Ki-Hong Jung
- Graduate School of Green-Bio Science and Crop Biotech Institute, Kyung Hee University, Yongin 17104, Republic of Korea
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Zhao L, Li Y, Li Y, Chen W, Yao J, Fang S, Lv Y, Zhang Y, Zhu S. Systematical Characterization of the Cotton Di19 Gene Family and the Role of GhDi19-3 and GhDi19-4 as Two Negative Regulators in Response to Salt Stress. Antioxidants (Basel) 2022; 11:2225. [PMID: 36421411 PMCID: PMC9686973 DOI: 10.3390/antiox11112225] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Revised: 11/05/2022] [Accepted: 11/07/2022] [Indexed: 11/29/2023] Open
Abstract
Drought-induced 19 (Di19) protein is a Cys2/His2 (C2H2) type zinc-finger protein, which plays a crucial role in plant development and in response to abiotic stress. This study systematically investigated the characteristics of the GhDi19 gene family, including the member number, gene structure, chromosomal distribution, promoter cis-elements, and expression profiles. Transcriptomic analysis indicated that some GhDi19s were up-regulated under heat and salt stress. Particularly, two nuclear localized proteins, GhDi19-3 and GhDi19-4, were identified as being in potential salt stress responsive roles. GhDi19-3 and GhDi19-4 decreased sensitivity under salt stress through virus-induced gene silencing (VIGS), and showed significantly lower levels of H2O2, malondialdehyde (MDA), and peroxidase (POD) as well as significantly increased superoxide dismutase (SOD) activity. This suggested that their abilities were improved to effectively reduce the reactive oxygen species (ROS) damage. Furthermore, certain calcium signaling and abscisic acid (ABA)-responsive gene expression levels showed up- and down-regulation changes in target gene-silenced plants, suggesting that GhDi19-3 and GhDi19-4 were involved in calcium signaling and ABA signaling pathways in response to salt stress. In conclusion, GhDi19-3 and GhDi19-4, two negative transcription factors, were found to be responsive to salt stress through calcium signaling and ABA signaling pathways.
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Affiliation(s)
- Lanjie Zhao
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China
| | - Youzhong Li
- Xinjiang Production & Construction Group Key Laboratory of Crop Germplasm Enhancement and Gene Resources Utilization, Biotechnology Research Institute, Xinjiang Academy of Agricultural and Reclamation Science, Shihezi 832000, China
| | - Yan Li
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China
| | - Wei Chen
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China
| | - Jinbo Yao
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China
| | - Shengtao Fang
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China
| | - Youjun Lv
- Anyang Institute of Technology, Anyang 455000, China
| | - Yongshan Zhang
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China
| | - Shouhong Zhu
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang 455000, China
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7
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Nickolov K, Gauthier A, Hashimoto K, Laitinen T, Väisänen E, Paasela T, Soliymani R, Kurusu T, Himanen K, Blokhina O, Fagerstedt KV, Jokipii-Lukkari S, Tuominen H, Häggman H, Wingsle G, Teeri TH, Kuchitsu K, Kärkönen A. Regulation of PaRBOH1-mediated ROS production in Norway spruce by Ca 2+ binding and phosphorylation. FRONTIERS IN PLANT SCIENCE 2022; 13:978586. [PMID: 36311083 PMCID: PMC9608432 DOI: 10.3389/fpls.2022.978586] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/26/2022] [Accepted: 09/15/2022] [Indexed: 06/16/2023]
Abstract
Plant respiratory burst oxidase homologs (RBOHs) are plasma membrane-localized NADPH oxidases that generate superoxide anion radicals, which then dismutate to H2O2, into the apoplast using cytoplasmic NADPH as an electron donor. PaRBOH1 is the most highly expressed RBOH gene in developing xylem as well as in a lignin-forming cell culture of Norway spruce (Picea abies L. Karst.). Since no previous information about regulation of gymnosperm RBOHs exist, our aim was to resolve how PaRBOH1 is regulated with a focus on phosphorylation. The N-terminal part of PaRBOH1 was found to contain several putative phosphorylation sites and a four-times repeated motif with similarities to the Botrytis-induced kinase 1 target site in Arabidopsis AtRBOHD. Phosphorylation was indicated for six of the sites in in vitro kinase assays using 15 amino-acid-long peptides for each of the predicted phosphotarget site in the presence of protein extracts of developing xylem. Serine and threonine residues showing positive response in the peptide assays were individually mutated to alanine (kinase-inactive) or to aspartate (phosphomimic), and the wild type PaRBOH1 and the mutated constructs transfected to human kidney embryogenic (HEK293T) cells with a low endogenous level of extracellular ROS production. ROS-producing assays with HEK cells showed that Ca2+ and phosphorylation synergistically activate the enzyme and identified several serine and threonine residues that are likely to be phosphorylated including a novel phosphorylation site not characterized in other plant species. These were further investigated with a phosphoproteomic study. Results of Norway spruce, the first gymnosperm species studied in relation to RBOH regulation, show that regulation of RBOH activity is conserved among seed plants.
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Affiliation(s)
- Kaloian Nickolov
- Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
- Department of Ecology and Genetics, University of Oulu, Oulu, Finland
| | - Adrien Gauthier
- Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
- UniLaSalle, Agro-Ecology, Hydrogeochemistry, Environments & Resources, UP 2018.C101 of the Ministry in Charge of Agriculture (AGHYLE) Research Unit CS UP 2018.C101, Mont-Saint-Aignan, France
| | - Kenji Hashimoto
- Department of Applied Biological Science, Tokyo University of Science, Noda, Japan
| | - Teresa Laitinen
- Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
| | - Enni Väisänen
- Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
- Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
| | - Tanja Paasela
- Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
- Natural Resources Institute Finland (Luke), Production Systems, Helsinki, Finland
| | - Rabah Soliymani
- Meilahti Clinical Proteomics Core Facility, Biochemistry & Dev. Biology, University of Helsinki, Biomedicum-Helsinki, Helsinki, Finland
| | - Takamitsu Kurusu
- Department of Applied Biological Science, Tokyo University of Science, Noda, Japan
| | - Kristiina Himanen
- Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
| | - Olga Blokhina
- Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
| | - Kurt V. Fagerstedt
- Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
| | - Soile Jokipii-Lukkari
- Department of Ecology and Genetics, University of Oulu, Oulu, Finland
- Department of Plant Physiology, Umeå Plant Science Centre, Umeå University, Umeå, Sweden
| | - Hannele Tuominen
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Hely Häggman
- Department of Ecology and Genetics, University of Oulu, Oulu, Finland
| | - Gunnar Wingsle
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Teemu H. Teeri
- Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
| | - Kazuyuki Kuchitsu
- Department of Applied Biological Science, Tokyo University of Science, Noda, Japan
| | - Anna Kärkönen
- Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
- Natural Resources Institute Finland (Luke), Production Systems, Helsinki, Finland
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Zhang L, Wang L, Chen X, Zhao L, Liu X, Wang Y, Wu G, Xia C, Zhang L, Kong X. The protein phosphatase 2C clade A TaPP2CA interact with calcium-dependent protein kinases, TaCDPK5/TaCDPK9-1, that phosphorylate TabZIP60 transcription factor from wheat (Triticum aestivum L.). PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2022; 321:111304. [PMID: 35696905 DOI: 10.1016/j.plantsci.2022.111304] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Revised: 04/20/2022] [Accepted: 04/24/2022] [Indexed: 05/20/2023]
Abstract
Previously we have found that TabZIP60 from the ABF/AREB (ABRE-binding factor/ABA-responsive element-binding protein) subfamily of bZIP transcription factor (TF) was involved in salt stress response. However, the regulatory mechanism of TabZIP60 is unknown. In the present study, we identified two calcium-dependent protein kinase (CDPK) genes, TaCDPK5/TaCDPK9-1, which were clustered into group Ⅰ and were induced by salt, abscisic acid (ABA), and polyethylene glycol (PEG) treatments. RT-qPCR results showed that the expression level of salt-induced TabZIP60 was drastically inhibited by Ca2+ channel blocker LaCl3. TaCDPK5/TaCDPK9-1 were involved in interaction with TabZIP60 protein in vivo and in vitro. And TaCDPK5/TaCDPK9-1 could autophosphorylate and phosphorylate TabZIP60 protein in a Ca2+-dependent way. Mutational analysis indicated that Serine-110 of TabZIP60 was essential for TaCDPK5/TaCDPK9-1-TabZIP60 interaction and was the phosphorylation site of TaCDPK5/TaCDPK9-1 kinases. Yeast two-hybrid assay results showed the interactions between TaCDPK5/TaCDPK9-1 and wheat protein phosphatase 2 C clade A TaPP2CA116/ TaPP2CA121 separately. These findings demonstrate that the phosphorylation status of TabZIP60 controlled by TaPP2CA116/ TaPP2CA121 and TaCDPK5/TaCDPK9-1 might play a crucial role in wheat during salt stress.
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Affiliation(s)
- Lina Zhang
- College of Life Sciences, Northwest Normal University, Lanzhou, Gansu 730070, China.
| | - Liting Wang
- College of Life Sciences, Northwest Normal University, Lanzhou, Gansu 730070, China
| | - Xue Chen
- College of Life Sciences, Northwest Normal University, Lanzhou, Gansu 730070, China
| | - Lijuan Zhao
- College of Life Sciences, Northwest Normal University, Lanzhou, Gansu 730070, China
| | - Xingyan Liu
- College of Life Sciences, Northwest Normal University, Lanzhou, Gansu 730070, China
| | - Yinghong Wang
- Xinxiang Academy of Agricultural Sciences, Xinxiang, Henan 453000, China
| | - Guofan Wu
- College of Life Sciences, Northwest Normal University, Lanzhou, Gansu 730070, China
| | - Chuan Xia
- Key Laboratory of Crop Gene Resources and Germplasm Enhancement, Ministry of Agriculture, The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Lichao Zhang
- Key Laboratory of Crop Gene Resources and Germplasm Enhancement, Ministry of Agriculture, The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Xiuying Kong
- Key Laboratory of Crop Gene Resources and Germplasm Enhancement, Ministry of Agriculture, The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China
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9
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Yip Delormel T, Avila-Ospina L, Davanture M, Zivy M, Lang J, Valentin N, Rayapuram N, Hirt H, Colcombet J, Boudsocq M. In vivo identification of putative CPK5 substrates in Arabidopsis thaliana. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2022; 314:111121. [PMID: 34895550 DOI: 10.1016/j.plantsci.2021.111121] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Revised: 11/12/2021] [Accepted: 11/15/2021] [Indexed: 06/14/2023]
Abstract
Calcium signaling mediates most developmental processes and stress responses in plants. Among plant calcium sensors, the calcium-dependent protein kinases display a unique structure harboring both calcium sensing and kinase responding activities. AtCPK5 is an essential member of this family in Arabidopsis that regulates immunity and abiotic stress tolerance. To understand the underlying molecular mechanisms, we implemented a biochemical approach to identify in vivo substrates of AtCPK5. We generated transgenic lines expressing a constitutively active form of AtCPK5 under the control of a dexamethasone-inducible promoter. Lines expressing a kinase-dead version were used as a negative control. By comparing the phosphoproteome of the kinase-active and kinase-dead lines upon dexamethasone treatment, we identified 5 phosphopeptides whose abundance increased specifically in the kinase-active lines. Importantly, we showed that all 5 proteins were phosphorylated in vitro by AtCPK5 in a calcium-dependent manner, suggesting that they are direct targets of AtCPK5. We also detected several interaction patterns between the kinase and the candidates in the cytosol, membranes or nucleus, consistent with the ubiquitous localization of AtCPK5. Finally, we further validated the two phosphosites S245 and S280 targeted by AtCPK5 in the E3 ubiquitin ligase ATL31. Altogether, those results open new perspectives to decipher AtCPK5 biological functions.
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Affiliation(s)
- Tiffany Yip Delormel
- Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), 91405, Orsay, France; Université de Paris, Institute of Plant Sciences Paris-Saclay (IPS2), 91405, Orsay, France.
| | - Liliana Avila-Ospina
- Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), 91405, Orsay, France; Université de Paris, Institute of Plant Sciences Paris-Saclay (IPS2), 91405, Orsay, France.
| | - Marlène Davanture
- Université Paris-Saclay, INRAE, CNRS, AgroParisTech, Génétique Quantitative et Évolution (GQE) - Le Moulon, 91190, Gif-sur-Yvette, France.
| | - Michel Zivy
- Université Paris-Saclay, INRAE, CNRS, AgroParisTech, Génétique Quantitative et Évolution (GQE) - Le Moulon, 91190, Gif-sur-Yvette, France.
| | - Julien Lang
- Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), 91405, Orsay, France; Université de Paris, Institute of Plant Sciences Paris-Saclay (IPS2), 91405, Orsay, France.
| | - Nicolas Valentin
- Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), 91405, Orsay, France; Université de Paris, Institute of Plant Sciences Paris-Saclay (IPS2), 91405, Orsay, France.
| | - Naganand Rayapuram
- Center for Desert Agriculture, 4700 King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
| | - Heribert Hirt
- Center for Desert Agriculture, 4700 King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
| | - Jean Colcombet
- Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), 91405, Orsay, France; Université de Paris, Institute of Plant Sciences Paris-Saclay (IPS2), 91405, Orsay, France.
| | - Marie Boudsocq
- Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), 91405, Orsay, France; Université de Paris, Institute of Plant Sciences Paris-Saclay (IPS2), 91405, Orsay, France.
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10
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Lefoulon C. The bare necessities of plant K+ channel regulation. PLANT PHYSIOLOGY 2021; 187:2092-2109. [PMID: 34618033 PMCID: PMC8644596 DOI: 10.1093/plphys/kiab266] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Accepted: 05/11/2021] [Indexed: 05/29/2023]
Abstract
Potassium (K+) channels serve a wide range of functions in plants from mineral nutrition and osmotic balance to turgor generation for cell expansion and guard cell aperture control. Plant K+ channels are members of the superfamily of voltage-dependent K+ channels, or Kv channels, that include the Shaker channels first identified in fruit flies (Drosophila melanogaster). Kv channels have been studied in depth over the past half century and are the best-known of the voltage-dependent channels in plants. Like the Kv channels of animals, the plant Kv channels are regulated over timescales of milliseconds by conformational mechanisms that are commonly referred to as gating. Many aspects of gating are now well established, but these channels still hold some secrets, especially when it comes to the control of gating. How this control is achieved is especially important, as it holds substantial prospects for solutions to plant breeding with improved growth and water use efficiencies. Resolution of the structure for the KAT1 K+ channel, the first channel from plants to be crystallized, shows that many previous assumptions about how the channels function need now to be revisited. Here, I strip the plant Kv channels bare to understand how they work, how they are gated by voltage and, in some cases, by K+ itself, and how the gating of these channels can be regulated by the binding with other protein partners. Each of these features of plant Kv channels has important implications for plant physiology.
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Affiliation(s)
- Cécile Lefoulon
- Laboratory of Plant Physiology and Biophysics, Bower Building, University of Glasgow, Glasgow G12 8QQ, Scotland
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11
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Lee H, Ganguly A, Baik S, Cho HT. Calcium-dependent protein kinase 29 modulates PIN-FORMED polarity and Arabidopsis development via its own phosphorylation code. THE PLANT CELL 2021; 33:3513-3531. [PMID: 34402905 PMCID: PMC8566293 DOI: 10.1093/plcell/koab207] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Accepted: 08/12/2021] [Indexed: 05/15/2023]
Abstract
PIN-FORMED (PIN)-mediated polar auxin transport (PAT) is involved in key developmental processes in plants. Various internal and external cues influence plant development via the modulation of intracellular PIN polarity and, thus, the direction of PAT, but the mechanisms underlying these processes remain largely unknown. PIN proteins harbor a hydrophilic loop (HL) that has important regulatory functions; here, we used the HL as bait in protein pulldown screening for modulators of intracellular PIN trafficking in Arabidopsis thaliana. Calcium-dependent protein kinase 29 (CPK29), a Ca2+-dependent protein kinase, was identified and shown to phosphorylate specific target residues on the PIN-HL that were not phosphorylated by other kinases. Furthermore, loss of CPK29 or mutations of the phospho-target residues in PIN-HLs significantly compromised intracellular PIN trafficking and polarity, causing defects in PIN-mediated auxin redistribution and biological processes such as lateral root formation, root twisting, hypocotyl gravitropism, phyllotaxis, and reproductive development. These findings indicate that CPK29 directly interprets Ca2+ signals from internal and external triggers, resulting in the modulation of PIN trafficking and auxin responses.
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Affiliation(s)
- Hyodong Lee
- Department of Biological Sciences, Seoul National University, Seoul 08826, Korea
| | - Anindya Ganguly
- Department of Biological Sciences, Seoul National University, Seoul 08826, Korea
| | - Song Baik
- Department of Biological Sciences, Seoul National University, Seoul 08826, Korea
| | - Hyung-Taeg Cho
- Department of Biological Sciences, Seoul National University, Seoul 08826, Korea
- Author for correspondence:
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12
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Plasmodium falciparum Calcium-Dependent Protein Kinase 4 is Critical for Male Gametogenesis and Transmission to the Mosquito Vector. mBio 2021; 12:e0257521. [PMID: 34724830 PMCID: PMC8561384 DOI: 10.1128/mbio.02575-21] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Gametocytes of the malaria parasite Plasmodium are taken up by the mosquito vector with an infectious blood meal, representing a critical stage for parasite transmission. Calcium-independent protein kinases (CDPKs) play key roles in calcium-mediated signaling across the complex life cycle of the parasite. We sought to understand their role in human parasite transmission from the host to the mosquito vector and thus investigated the role of the human-infective parasite Plasmodium falciparum CDPK4 in the parasite life cycle. P. falciparumcdpk4− parasites created by targeted gene deletion showed no effect in blood stage development or gametocyte development. However, cdpk4− parasites showed a severe defect in male gametogenesis and the emergence of flagellated male gametes. To understand the molecular underpinnings of this defect, we performed mass spectrometry-based phosphoproteomic analyses of wild-type and Plasmodium falciparumcdpk4− late gametocyte stages to identify key CDPK4-mediated phosphorylation events that may be important for the regulation of male gametogenesis. We further employed in vitro assays to identify these putative substrates of Plasmodium falciparum CDPK4. This indicated that CDPK4 regulates male gametogenesis by directly or indirectly controlling key essential events, such as DNA replication, mRNA translation, and cell motility. Taken together, our work demonstrates that PfCDPK4 is a central kinase that regulates exflagellation and thereby is critical for parasite transmission to the mosquito vector.
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13
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Krahmer J, Hindle M, Perby LK, Mogensen HK, Nielsen TH, Halliday KJ, VanOoijen G, LeBihan T, Millar AJ. The circadian clock gene circuit controls protein and phosphoprotein rhythms in Arabidopsis thaliana. Mol Cell Proteomics 2021; 21:100172. [PMID: 34740825 PMCID: PMC8733343 DOI: 10.1016/j.mcpro.2021.100172] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Revised: 09/27/2021] [Accepted: 11/01/2021] [Indexed: 11/29/2022] Open
Abstract
Twenty-four-hour, circadian rhythms control many eukaryotic mRNA levels, whereas the levels of their more stable proteins are not expected to reflect the RNA rhythms, emphasizing the need to test the circadian regulation of protein abundance and modification. Here we present circadian proteomic and phosphoproteomic time series from Arabidopsis thaliana plants under constant light conditions, estimating that just 0.4% of quantified proteins but a much larger proportion of quantified phospho-sites were rhythmic. Approximately half of the rhythmic phospho-sites were most phosphorylated at subjective dawn, a pattern we term the “phospho-dawn.” Members of the SnRK/CDPK family of protein kinases are candidate regulators. A CCA1-overexpressing line that disables the clock gene circuit lacked most circadian protein phosphorylation. However, the few phospho-sites that fluctuated despite CCA1-overexpression still tended to peak in abundance close to subjective dawn, suggesting that the canonical clock mechanism is necessary for most but perhaps not all protein phosphorylation rhythms. To test the potential functional relevance of our datasets, we conducted phosphomimetic experiments using the bifunctional enzyme fructose-6-phosphate-2-kinase/phosphatase (F2KP), as an example. The rhythmic phosphorylation of diverse protein targets is controlled by the clock gene circuit, implicating posttranslational mechanisms in the transmission of circadian timing information in plants. Circadian (phospho)proteomics time courses of plants with or without functional clock. Most protein abundance/phosphorylation rhythms require a transcriptional oscillator. The majority of rhythmic phosphosites peak around subjective dawn (“phospho-dawn”). A phosphorylated serine of the metabolic enzyme F2KP has functional relevance.
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Affiliation(s)
- Johanna Krahmer
- SynthSys and School of Biological Sciences, CH Waddington Building, Max Born Crescent, Kings Buildings, University of Edinburgh, Edinburgh, EH9 3BF, United Kingdom; Institute for Molecular Plant Science, School of Biological Sciences, Daniel Rutherford Building, Building, Max Born Crescent, Kings Buildings, University of Edinburgh, Edinburgh, EH9 3BF, United Kingdom.
| | - Matthew Hindle
- The Roslin Institute and Royal (Dick) School of Veterinary Studies, Easter Bush, Edinburgh, EH25 9RG, United Kingdom
| | - Laura K Perby
- Department of Plant and Environmental Sciences, University of Copenhagen, Section for Molecular Plant Biology, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
| | - Helle K Mogensen
- Department of Plant and Environmental Sciences, University of Copenhagen, Section for Molecular Plant Biology, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
| | - Tom H Nielsen
- Department of Plant and Environmental Sciences, University of Copenhagen, Section for Molecular Plant Biology, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
| | - Karen J Halliday
- Institute for Molecular Plant Science, School of Biological Sciences, Daniel Rutherford Building, Building, Max Born Crescent, Kings Buildings, University of Edinburgh, Edinburgh, EH9 3BF, United Kingdom
| | - Gerben VanOoijen
- Institute for Molecular Plant Science, School of Biological Sciences, Daniel Rutherford Building, Building, Max Born Crescent, Kings Buildings, University of Edinburgh, Edinburgh, EH9 3BF, United Kingdom
| | - Thierry LeBihan
- SynthSys and School of Biological Sciences, CH Waddington Building, Max Born Crescent, Kings Buildings, University of Edinburgh, Edinburgh, EH9 3BF, United Kingdom
| | - Andrew J Millar
- SynthSys and School of Biological Sciences, CH Waddington Building, Max Born Crescent, Kings Buildings, University of Edinburgh, Edinburgh, EH9 3BF, United Kingdom.
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14
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Ménesi D, Klement É, Ferenc G, Fehér A. The Arabidopsis Rho of Plants GTPase ROP1 Is a Potential Calcium-Dependent Protein Kinase (CDPK) Substrate. PLANTS (BASEL, SWITZERLAND) 2021; 10:2053. [PMID: 34685862 PMCID: PMC8539224 DOI: 10.3390/plants10102053] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Revised: 09/15/2021] [Accepted: 09/25/2021] [Indexed: 11/16/2022]
Abstract
Plant Rho-type GTPases (ROPs) are versatile molecular switches involved in a number of signal transduction pathways. Although it is well known that they are indirectly linked to protein kinases, our knowledge about their direct functional interaction with upstream or downstream protein kinases is scarce. It is reasonable to suppose that similarly to their animal counterparts, ROPs might also be regulated by phosphorylation. There is only, however, very limited experimental evidence to support this view. Here, we present the analysis of two potential phosphorylation sites of AtROP1 and two types of potential ROP-kinases. The S74 site of AtROP1 has been previously shown to potentially regulate AtROP1 activation dependent on its phosphorylation state. However, the kinase phosphorylating this evolutionarily conserved site could not be identified: we show here that despite of the appropriate phosphorylation site consensus sequences around S74 neither the selected AGC nor CPK kinases phosphorylate S74 of AtROP1 in vitro. However, we identified several phosphorylation sites other than S74 for the CPK17 and 34 kinases in AtROP1. One of these sites, S97, was tested for biological relevance. Although the mutation of S97 to alanine (which cannot be phosphorylated) or glutamic acid (which mimics phosphorylation) somewhat altered the protein interaction strength of AtROP1 in yeast cells, the mutant proteins did not modify pollen tube growth in an in vivo test.
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Affiliation(s)
- Dalma Ménesi
- Institute of Plant Biology, Biological Research Centre of the Eötvös Lóránd Research Network, 6726 Szeged, Hungary; (D.M.); (G.F.)
| | - Éva Klement
- Laboratory of Proteomics Research, Biological Research Centre of the Eötvös Lóránd Research Network, 6726 Szeged, Hungary; or
- Single Cell Omics ACF, Hungarian Centre of Excellence for Molecular Medicine, 6726 Szeged, Hungary
| | - Györgyi Ferenc
- Institute of Plant Biology, Biological Research Centre of the Eötvös Lóránd Research Network, 6726 Szeged, Hungary; (D.M.); (G.F.)
| | - Attila Fehér
- Institute of Plant Biology, Biological Research Centre of the Eötvös Lóránd Research Network, 6726 Szeged, Hungary; (D.M.); (G.F.)
- Department of Plant Biology, University of Szeged, 6726 Szeged, Hungary
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15
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Alves HLS, Matiolli CC, Soares RC, Almadanim MC, Oliveira MM, Abreu IA. Carbon/nitrogen metabolism and stress response networks - calcium-dependent protein kinases as the missing link? JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:4190-4201. [PMID: 33787877 PMCID: PMC8162629 DOI: 10.1093/jxb/erab136] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 03/29/2021] [Indexed: 05/04/2023]
Abstract
Calcium-dependent protein kinases (CDPKs) play essential roles in plant development and stress responses. CDPKs have a conserved kinase domain, followed by an auto-inhibitory junction connected to the calmodulin-like domain that binds Ca2+. These structural features allow CDPKs to decode the dynamic changes in cytoplasmic Ca2+ concentrations triggered by hormones and by biotic and abiotic stresses. In response to these signals, CDPKs phosphorylate downstream protein targets to regulate growth and stress responses according to the environmental and developmental circumstances. The latest advances in our understanding of the metabolic, transcriptional, and protein-protein interaction networks involving CDPKs suggest that they have a direct influence on plant carbon/nitrogen (C/N) balance. In this review, we discuss how CDPKs could be key signaling nodes connecting stress responses with metabolic homeostasis, and acting together with the sugar and nutrient signaling hubs SnRK1, HXK1, and TOR to improve plant fitness.
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Affiliation(s)
- Hugo L S Alves
- Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB NOVA), Avenida da República, 2780-157 Oeiras, Portugal
| | - Cleverson C Matiolli
- Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB NOVA), Avenida da República, 2780-157 Oeiras, Portugal
| | - Rafael C Soares
- Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB NOVA), Avenida da República, 2780-157 Oeiras, Portugal
| | - M Cecília Almadanim
- Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB NOVA), Avenida da República, 2780-157 Oeiras, Portugal
| | - M Margarida Oliveira
- Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB NOVA), Avenida da República, 2780-157 Oeiras, Portugal
| | - Isabel A Abreu
- Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB NOVA), Avenida da República, 2780-157 Oeiras, Portugal
- Correspondence:
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16
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Yang H, You C, Yang S, Zhang Y, Yang F, Li X, Chen N, Luo Y, Hu X. The Role of Calcium/Calcium-Dependent Protein Kinases Signal Pathway in Pollen Tube Growth. FRONTIERS IN PLANT SCIENCE 2021; 12:633293. [PMID: 33767718 PMCID: PMC7985351 DOI: 10.3389/fpls.2021.633293] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Accepted: 02/15/2021] [Indexed: 05/21/2023]
Abstract
Pollen tube (PT) growth as a key step for successful fertilization is essential for angiosperm survival and especially vital for grain yield in cereals. The process of PT growth is regulated by many complex and delicate signaling pathways. Among them, the calcium/calcium-dependent protein kinases (Ca2+/CPKs) signal pathway has become one research focus, as Ca2+ ion is a well-known essential signal molecule for PT growth, which can be instantly sensed and transduced by CPKs to control myriad biological processes. In this review, we summarize the recent progress in understanding the Ca2+/CPKs signal pathway governing PT growth. We also discuss how this pathway regulates PT growth and how reactive oxygen species (ROS) and cyclic nucleotide are integrated by Ca2+ signaling networks.
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Affiliation(s)
- Hao Yang
- State Key Laboratory of Wheat & Maize Crop Science, Henan Agricultural University, Zhengzhou, China
| | - Chen You
- College of Life Science, Henan Normal University, Xinxiang, China
| | - Shaoyu Yang
- State Key Laboratory of Wheat & Maize Crop Science, Henan Agricultural University, Zhengzhou, China
| | - Yuping Zhang
- State Key Laboratory of Wheat & Maize Crop Science, Henan Agricultural University, Zhengzhou, China
| | - Fan Yang
- Department of Biology, Taiyuan Normal University, Jinzhong, China
| | - Xue Li
- State Key Laboratory of Wheat & Maize Crop Science, Henan Agricultural University, Zhengzhou, China
| | - Ning Chen
- State Key Laboratory of Wheat & Maize Crop Science, Henan Agricultural University, Zhengzhou, China
| | - Yanmin Luo
- State Key Laboratory of Wheat & Maize Crop Science, Henan Agricultural University, Zhengzhou, China
| | - Xiuli Hu
- State Key Laboratory of Wheat & Maize Crop Science, Henan Agricultural University, Zhengzhou, China
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17
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Dietrich P, Moeder W, Yoshioka K. Plant Cyclic Nucleotide-Gated Channels: New Insights on Their Functions and Regulation. PLANT PHYSIOLOGY 2020; 184:27-38. [PMID: 32576644 PMCID: PMC7479878 DOI: 10.1104/pp.20.00425] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2020] [Accepted: 06/17/2020] [Indexed: 05/02/2023]
Abstract
Recent advances of plant cyclic nucleotide-gated channels give new insight into their molecular functions focusing on regulation, subunit assembly, and phosphorylation.
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Affiliation(s)
- Petra Dietrich
- Molecular Plant Physiology, Friedrich-Alexander University Erlangen-Nuremberg, 91058 Erlangen, Germany
| | - Wolfgang Moeder
- Department of Cell and Systems Biology, University of Toronto, Toronto, Ontario, M5S 3B2, Canada
| | - Keiko Yoshioka
- Department of Cell and Systems Biology, University of Toronto, Toronto, Ontario, M5S 3B2, Canada
- Center for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, Ontario, M5S 3B2, Canada
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18
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Liu KH, Diener A, Lin Z, Liu C, Sheen J. Primary nitrate responses mediated by calcium signalling and diverse protein phosphorylation. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:4428-4441. [PMID: 31985788 PMCID: PMC7382375 DOI: 10.1093/jxb/eraa047] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Accepted: 01/24/2020] [Indexed: 05/04/2023]
Abstract
Nitrate, the major source of inorganic nitrogen for plants, is a critical signal controlling nutrient transport and assimilation and adaptive growth responses throughout the plant. Understanding how plants perceive nitrate and how this perception is transduced into responses that optimize growth are important for the rational improvement of crop productivity and for mitigating pollution from the use of fertilizers. This review highlights recent findings that reveal key roles of cytosolic-nuclear calcium signalling and dynamic protein phosphorylation via diverse mechanisms in the primary nitrate response (PNR). Nitrate-triggered calcium signatures as well as the critical functions of subgroup III calcium-sensor protein kinases, a specific protein phosphatase 2C, and RNA polymerase II C-terminal domain phosphatase-like 3 are discussed. Moreover, genome-wide meta-analysis of nitrate-regulated genes encoding candidate protein kinases and phosphatases for modulating critical phosphorylation events in the PNR are elaborated. We also consider how phosphoproteomics approaches can contribute to the identification of putative regulatory protein kinases in the PNR. Exploring and integrating experimental strategies, new methodologies, and comprehensive datasets will further advance our understanding of the molecular and cellular mechanisms underlying the complex regulatory processes in the PNR.
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Affiliation(s)
- Kun-Hsiang Liu
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest Agriculture & Forestry University, Yangling, Shaanxi, China
- Department of Molecular Biology and Centre for Computational and Integrative Biology, Massachusetts General Hospital, and Department of Genetics, Harvard Medical School, Boston, MA, USA
- Correspondence:
| | - Andrew Diener
- Department of Molecular Biology and Centre for Computational and Integrative Biology, Massachusetts General Hospital, and Department of Genetics, Harvard Medical School, Boston, MA, USA
| | - Ziwei Lin
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest Agriculture & Forestry University, Yangling, Shaanxi, China
| | - Cong Liu
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest Agriculture & Forestry University, Yangling, Shaanxi, China
| | - Jen Sheen
- Department of Molecular Biology and Centre for Computational and Integrative Biology, Massachusetts General Hospital, and Department of Genetics, Harvard Medical School, Boston, MA, USA
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19
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Khalid MHB, Raza MA, Yu HQ, Khan I, Sun FA, Feng LY, Qu JT, Fu FL, Li WC. Expression, Subcellular Localization, and Interactions of CPK Family Genes in Maize. Int J Mol Sci 2019; 20:E6173. [PMID: 31817801 PMCID: PMC6940914 DOI: 10.3390/ijms20246173] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Revised: 11/30/2019] [Accepted: 12/05/2019] [Indexed: 12/20/2022] Open
Abstract
Calcium-dependent protein kinase (CPKs) is a key player in the calcium signaling pathway to decode calcium signals into various physiological responses. cDNA sequences of 9 ZmCPK genes were successfully cloned from all four phylogenetic groups in maize. qRT-PCR analysis showed the expression variation of these selected genes under abscisic acid (ABA) and calcium chloride (CaCl2) treatment. Due to the presence of N-myristoylation/palmitoylation sites, the selected ZmCPK members were localized in a plasma membrane. To clarify whether ZmCPK, a key player in calcium signaling, interacts with key players of ABA, protein phosphatase 2Cs (PP2Cs) and the SNF1-related protein kinase 2s (SnRK2s) and mitogen-activated protein kinase (MAPK) signaling pathways in maize, we examined the interaction between 9 CPKs, 8 PP2Cs, 5 SnRKs, and 20 members of the MPK family in maize by using yeast two-hybrid assay. Our results showed that three ZmCPKs interact with three different members of ZmSnRKs while four ZmCPK members had a positive interaction with 13 members of ZmMPKs in different combinations. These four ZmCPK proteins are from three different groups in maize. These findings of physical interactions between ZmCPKs, ZmSnRKs, and ZmMPKs suggested that these signaling pathways do not only have indirect influence but also have direct crosstalk that may involve the defense mechanism in maize. The present study may improve the understanding of signal transduction in plants.
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Affiliation(s)
- Muhammad Hayder Bin Khalid
- Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China; (M.H.B.K.); (H.Q.Y.); (F.A.S.); (J.T.Q.)
| | - Muhammad Ali Raza
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China; (M.A.R.); (L.Y.F.)
| | - Hao Qiang Yu
- Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China; (M.H.B.K.); (H.Q.Y.); (F.A.S.); (J.T.Q.)
| | - Imran Khan
- Department of Grassland Science, Sichuan Agricultural University, Chengdu 611130, China;
| | - Fu Ai Sun
- Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China; (M.H.B.K.); (H.Q.Y.); (F.A.S.); (J.T.Q.)
| | - Ling Yang Feng
- College of Agronomy, Sichuan Agricultural University, Chengdu 611130, China; (M.A.R.); (L.Y.F.)
| | - Jing Tao Qu
- Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China; (M.H.B.K.); (H.Q.Y.); (F.A.S.); (J.T.Q.)
| | - Feng Ling Fu
- Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China; (M.H.B.K.); (H.Q.Y.); (F.A.S.); (J.T.Q.)
| | - Wan Chen Li
- Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China; (M.H.B.K.); (H.Q.Y.); (F.A.S.); (J.T.Q.)
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20
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Yip Delormel T, Boudsocq M. Properties and functions of calcium-dependent protein kinases and their relatives in Arabidopsis thaliana. THE NEW PHYTOLOGIST 2019; 224:585-604. [PMID: 31369160 DOI: 10.1111/nph.16088] [Citation(s) in RCA: 119] [Impact Index Per Article: 23.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2019] [Accepted: 07/19/2019] [Indexed: 05/20/2023]
Abstract
Calcium is a ubiquitous second messenger that mediates plant responses to developmental and environmental cues. Calcium-dependent protein kinases (CDPKs) are key actors of plant signaling that convey calcium signals into physiological responses by phosphorylating various substrates including ion channels, transcription factors and metabolic enzymes. This large diversity of targets confers pivotal roles of CDPKs in shoot and root development, pollen tube growth, stomatal movements, hormonal signaling, transcriptional reprogramming and stress tolerance. On the one hand, specificity in CDPK signaling is achieved by differential calcium sensitivities, expression patterns, subcellular localizations and substrates. On the other hand, CDPKs also target some common substrates to ensure key cellular processes indispensable for plant growth and survival in adverse environmental conditions. In addition, the CDPK-related protein kinases (CRKs) might be closer to some CDPKs than previously anticipated and could contribute to calcium signaling despite their inability to bind calcium. This review highlights the regulatory properties of Arabidopsis CDPKs and CRKs that coordinate their multifaceted functions in development, immunity and abiotic stress responses.
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Affiliation(s)
- Tiffany Yip Delormel
- Institute of Plant Sciences Paris-Saclay (IPS2), CNRS, INRA, Université Paris-Sud, Université d'Evry Val d'Essonne, Université Paris-Diderot, Sorbonne Paris-Cité, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Marie Boudsocq
- Institute of Plant Sciences Paris-Saclay (IPS2), CNRS, INRA, Université Paris-Sud, Université d'Evry Val d'Essonne, Université Paris-Diderot, Sorbonne Paris-Cité, Université Paris-Saclay, Gif-sur-Yvette, France
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21
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Wang PH, Lee CE, Lin YS, Lee MH, Chen PY, Chang HC, Chang IF. The Glutamate Receptor-Like Protein GLR3.7 Interacts With 14-3-3ω and Participates in Salt Stress Response in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 2019; 10:1169. [PMID: 31632419 DOI: 10.3389/fpls.2019.01169/full] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 04/23/2019] [Accepted: 08/27/2019] [Indexed: 05/25/2023]
Abstract
Ionotropic glutamate receptors (iGluRs) are ligand-gated cation channels that mediate fast excitatory neurotransmission in the mammalian central nervous system. In the model plant Arabidopsis thaliana, a family of 20 glutamate receptor-like proteins (GLRs) shares similarities to animal iGluRs in sequence and predicted secondary structure. However, the function of GLRs in plants is little known. In the present study, a serine site (Ser-860) of AtGLR3.7 phosphorylated by a calcium-dependent protein kinase (CDPK) was identified and confirmed by an in vitro kinase assay. Using a bimolecular fluorescence complementation and quartz crystal microbalance analyses, the physical interaction between AtGLR3.7 and the 14-3-3ω protein was confirmed. The mutation of Ser-860 to alanine abolished this interaction, indicating that Ser-860 is the 14-3-3ω binding site of AtGLR3.7. Compared with wild type, seed germination of the glr3.7-2 mutant was more sensitive to salt stress. However, the primary root growth of GLR3.7-S860A overexpression lines was less sensitive to salt stress than that of the wild-type line. In addition, the increase of cytosolic calcium ion concentration by salt stress was significantly lower in the glr3.7-2 mutant line than in the wild-type line. Moreover, association of 14-3-3 proteins to microsomal fractions was less in GLR3.7-S860A overexpression lines than in GLR3.7 overexpression line under 150 mM NaCl salt stress condition. Overall, our results indicated that GLR3.7 is involved in salt stress response in A. thaliana by affecting calcium signaling.
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Affiliation(s)
- Po-Hsun Wang
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Cheng-En Lee
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Yi-Sin Lin
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Man-Hsuan Lee
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Pei-Yuan Chen
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Hui-Chun Chang
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Ing-Feng Chang
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
- Department of Life Science, National Taiwan University, Taipei, Taiwan
- Genome and Systems Biology Degree Program, National Taiwan University and Academia Sinica, Taipei, Taiwan
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Chang HC, Tsai MC, Wu SS, Chang IF. Regulation of ABI5 expression by ABF3 during salt stress responses in Arabidopsis thaliana. BOTANICAL STUDIES 2019; 60:16. [PMID: 31399930 PMCID: PMC6689043 DOI: 10.1186/s40529-019-0264-z] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2019] [Accepted: 07/31/2019] [Indexed: 05/02/2023]
Abstract
Background Basic region/leucine zippers (bZIPs) are transcription factors (TFs) encoded by a large gene family in plants. ABF3 and ABI5 are Group A bZIP TFs that are known to be important in abscisic acid (ABA) signaling. However, questions of whether ABF3 regulates ABI5 are still present. Results In vitro kinase assay results showed that Thr-128, Ser-134, and Thr-451 of ABF3 are calcium-dependent protein kinase phosphorylation sites. Bimolecular fluorescence complementation (BiFC) analysis results showed a physical interaction between ABF3 and 14-3-3ω. A Thr-451 to Ala point mutation abolished the interaction but did not change the subcellular localization. In addition, the Arabidopsis protoplast transactivation assay using a luciferase reporter exhibited ABI5 activation by either ABF3 alone or by co-expression of ABF3 and 14-3-3ω. Moreover, chromatin immunoprecipitation-qPCR results showed that in Arabidopsis, ABI5 ABA-responsive element binding proteins (ABREs) of the promoter region (between − 1376 and − 455) were enriched by ABF3 binding under normal and 150 mM NaCl salt stress conditions. Conclusion Taken together, our results demonstrated that ABI5 expression is regulated by ABF3, which could contribute to salt stress tolerance in Arabidopsis thaliana. Electronic supplementary material The online version of this article (10.1186/s40529-019-0264-z) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Hui-Chun Chang
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Min-Chieh Tsai
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Sih-Sian Wu
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Ing-Feng Chang
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
- Department of Life Science, National Taiwan University, Taipei, Taiwan
- Genome and Systems Biology Degree Program, National Taiwan University and Academia Sinica, Taipei, Taiwan
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Oulehlová D, Kollárová E, Cifrová P, Pejchar P, Žárský V, Cvrčková F. Arabidopsis Class I Formin FH1 Relocates between Membrane Compartments during Root Cell Ontogeny and Associates with Plasmodesmata. PLANT & CELL PHYSIOLOGY 2019; 60:1855-1870. [PMID: 31135031 DOI: 10.1093/pcp/pcz102] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2018] [Accepted: 05/14/2019] [Indexed: 05/03/2023]
Abstract
Formins are evolutionarily conserved eukaryotic proteins engaged in actin nucleation and other aspects of cytoskeletal organization. Angiosperms have two formin clades with multiple paralogs; typical plant Class I formins are integral membrane proteins that can anchor cytoskeletal structures to membranes. For the main Arabidopsis housekeeping Class I formin, FH1 (At3g25500), plasmalemma localization was documented in heterologous expression and overexpression studies. We previously showed that loss of FH1 function increases cotyledon epidermal pavement cell shape complexity via modification of actin and microtubule organization and dynamics. Here, we employ transgenic Arabidopsis expressing green fluorescent protein-tagged FH1 (FH1-GFP) from its native promoter to investigate in vivo behavior of this formin using advanced microscopy techniques. The fusion protein is functional, since its expression complements the fh1 loss-of-function mutant phenotype. Accidental overexpression of FH1-GFP results in a decrease in trichome branch number, while fh1 mutation has the opposite effect, indicating a general role of this formin in controlling cell shape complexity. Consistent with previous reports, FH1-GFP associates with membranes. However, the protein exhibits surprising actin- and secretory pathway-dependent dynamic localization and relocates between cellular endomembranes and the plasmalemma during cell division and differentiation in root tissues, with transient tonoplast localization at the transition/elongation zones border. FH1-GFP also accumulates in actin-rich regions of cortical cytoplasm and associates with plasmodesmata in both the cotyledon epidermis and root tissues. Together with previous reports from metazoan systems, this suggests that formins might have a shared (ancestral or convergent) role at cell-cell junctions.
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Affiliation(s)
- Denisa Oulehlová
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Prague 2, CZ 128 43, Czech Republic
- Institute of Experimental Botany of the CAS, Prague 6, CZ 165 02, Czech Republic
| | - Eva Kollárová
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Prague 2, CZ 128 43, Czech Republic
| | - Petra Cifrová
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Prague 2, CZ 128 43, Czech Republic
| | - Přemysl Pejchar
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Prague 2, CZ 128 43, Czech Republic
- Institute of Experimental Botany of the CAS, Prague 6, CZ 165 02, Czech Republic
| | - Viktor Žárský
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Prague 2, CZ 128 43, Czech Republic
- Institute of Experimental Botany of the CAS, Prague 6, CZ 165 02, Czech Republic
| | - Fatima Cvrčková
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Prague 2, CZ 128 43, Czech Republic
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Johnson MA, Harper JF, Palanivelu R. A Fruitful Journey: Pollen Tube Navigation from Germination to Fertilization. ANNUAL REVIEW OF PLANT BIOLOGY 2019; 70:809-837. [PMID: 30822112 DOI: 10.1146/annurev-arplant-050718-100133] [Citation(s) in RCA: 133] [Impact Index Per Article: 26.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
In flowering plants, pollen tubes undergo tip growth to deliver two nonmotile sperm to the ovule where they fuse with an egg and central cell to achieve double fertilization. This extended journey involves rapid growth and changes in gene activity that manage compatible interactions with at least seven different cell types. Nearly half of the genome is expressed in haploid pollen, which facilitates genetic analysis, even of essential genes. These unique attributes make pollen an ideal system with which to study plant cell-cell interactions, tip growth, cell migration, the modulation of cell wall integrity, and gene expression networks. We highlight the signaling systems required for pollen tube navigation and the potential roles of Ca2+ signals. The dynamics of pollen development make sexual reproduction highly sensitive to heat stress. Understanding this vulnerability may generate strategies to improve seed crop yields that are under threat from climate change.
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Affiliation(s)
- Mark A Johnson
- Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, Rhode Island 02912, USA;
| | - Jeffrey F Harper
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada 89557, USA;
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Chumová J, Kourová H, Trögelová L, Halada P, Binarová P. Microtubular and Nuclear Functions of γ-Tubulin: Are They LINCed? Cells 2019; 8:cells8030259. [PMID: 30893853 PMCID: PMC6468392 DOI: 10.3390/cells8030259] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2019] [Revised: 03/07/2019] [Accepted: 03/14/2019] [Indexed: 01/02/2023] Open
Abstract
γ-Tubulin is a conserved member of the tubulin superfamily with a function in microtubule nucleation. Proteins of γ-tubulin complexes serve as nucleation templates as well as a majority of other proteins contributing to centrosomal and non-centrosomal nucleation, conserved across eukaryotes. There is a growing amount of evidence of γ-tubulin functions besides microtubule nucleation in transcription, DNA damage response, chromatin remodeling, and on its interactions with tumor suppressors. However, the molecular mechanisms are not well understood. Furthermore, interactions with lamin and SUN proteins of the LINC complex suggest the role of γ-tubulin in the coupling of nuclear organization with cytoskeletons. γ-Tubulin that belongs to the clade of eukaryotic tubulins shows characteristics of both prokaryotic and eukaryotic tubulins. Both human and plant γ-tubulins preserve the ability of prokaryotic tubulins to assemble filaments and higher-order fibrillar networks. γ-Tubulin filaments, with bundling and aggregating capacity, are suggested to perform complex scaffolding and sequestration functions. In this review, we discuss a plethora of γ-tubulin molecular interactions and cellular functions, as well as recent advances in understanding the molecular mechanisms behind them.
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Affiliation(s)
- Jana Chumová
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20 Prague, Czech Republic.
| | - Hana Kourová
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20 Prague, Czech Republic.
| | - Lucie Trögelová
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20 Prague, Czech Republic.
| | - Petr Halada
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20 Prague, Czech Republic.
| | - Pavla Binarová
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20 Prague, Czech Republic.
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Kadota Y, Liebrand TW, Goto Y, Sklenar J, Derbyshire P, Menke FL, Torres MA, Molina A, Zipfel C, Coaker G, Shirasu K. Quantitative phosphoproteomic analysis reveals common regulatory mechanisms between effector- and PAMP-triggered immunity in plants. THE NEW PHYTOLOGIST 2019; 221:2160-2175. [PMID: 30300945 PMCID: PMC6367033 DOI: 10.1111/nph.15523] [Citation(s) in RCA: 76] [Impact Index Per Article: 15.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2018] [Accepted: 10/01/2018] [Indexed: 05/18/2023]
Abstract
Plant immunity consists of two arms: pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI), induced by surface-localized receptors, and effector-triggered immunity (ETI), induced by intracellular receptors. Despite the little structural similarity, both receptor types activate similar responses with different dynamics. To better understand phosphorylation events during ETI, we employed a phosphoproteomic screen using an inducible expression system of the bacterial effector avrRpt2 in Arabidopsis thaliana, and identified 109 differentially phosphorylated residues of membrane-associated proteins on activation of the intracellular RPS2 receptor. Interestingly, several RPS2-regulated phosphosites overlap with sites that are regulated during PTI, suggesting that these phosphosites may be convergent points of both signaling arms. Moreover, some of these sites are residues of important defense components, including the NADPH oxidase RBOHD, ABC-transporter PEN3, calcium-ATPase ACA8, noncanonical Gα protein XLG2 and H+ -ATPases. In particular, we found that S343 and S347 of RBOHD are common phosphorylation targets during PTI and ETI. Our mutational analyses showed that these sites are required for the production of reactive oxygen species during both PTI and ETI, and immunity against avirulent bacteria and a virulent necrotrophic fungus. We provide, for the first time, large-scale phosphoproteomic data of ETI, thereby suggesting crucial roles of common phosphosites in plant immunity.
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Affiliation(s)
- Yasuhiro Kadota
- RIKEN Center for Sustainable Resource Science, Plant Immunity Research Group, Suehiro-cho 1-7-22 Tsurumi-ku, Yokohama 230-0045, Japan
| | - Thomas W.H. Liebrand
- Department of Plant Pathology, University of California Davis, One Shields Avenue, Davis, CA 95616, USA
| | - Yukihisa Goto
- RIKEN Center for Sustainable Resource Science, Plant Immunity Research Group, Suehiro-cho 1-7-22 Tsurumi-ku, Yokohama 230-0045, Japan
| | - Jan Sklenar
- The Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, UK
| | - Paul Derbyshire
- The Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, UK
| | - Frank L.H. Menke
- The Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, UK
| | - Miguel-Angel Torres
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM, 28223-Pozuelo de Alarcón (Madrid), Spain
- Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, Universidad Politécnica de Madrid, 28040-Madrid, Spain
| | - Antonio Molina
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM, 28223-Pozuelo de Alarcón (Madrid), Spain
- Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, Universidad Politécnica de Madrid, 28040-Madrid, Spain
| | - Cyril Zipfel
- The Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, UK
- Department of Molecular and Cellular Plant Physiology, University of Zurich, Zollikerstrasse 107, CH-8008 Zurich, Switzerland
| | - Gitta Coaker
- Department of Plant Pathology, University of California Davis, One Shields Avenue, Davis, CA 95616, USA
| | - Ken Shirasu
- RIKEN Center for Sustainable Resource Science, Plant Immunity Research Group, Suehiro-cho 1-7-22 Tsurumi-ku, Yokohama 230-0045, Japan
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27
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Bredow M, Monaghan J. Regulation of Plant Immune Signaling by Calcium-Dependent Protein Kinases. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2019; 32:6-19. [PMID: 30299213 DOI: 10.1094/mpmi-09-18-0267-fi] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Activation of Ca2+ signaling is a universal response to stress that allows cells to quickly respond to environmental cues. Fluctuations in cytosolic Ca2+ are decoded in plants by Ca2+-sensing proteins such as Ca2+-dependent protein kinases (CDPKs). The perception of microbes results in an influx of Ca2+ that activates numerous CDPKs responsible for propagating immune signals required for resistance against disease-causing pathogens. This review describes our current understanding of CDPK activation and regulation, and provides a comprehensive overview of CDPK-mediated immune signaling through interaction with various substrates.
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Affiliation(s)
- Melissa Bredow
- Biology Department, Queen's University, Kingston ON K7L 3N6, Canada
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28
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Wang PH, Lee CE, Lin YS, Lee MH, Chen PY, Chang HC, Chang IF. The Glutamate Receptor-Like Protein GLR3.7 Interacts With 14-3-3ω and Participates in Salt Stress Response in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 2019; 10:1169. [PMID: 31632419 PMCID: PMC6779109 DOI: 10.3389/fpls.2019.01169] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2019] [Accepted: 08/27/2019] [Indexed: 05/19/2023]
Abstract
Ionotropic glutamate receptors (iGluRs) are ligand-gated cation channels that mediate fast excitatory neurotransmission in the mammalian central nervous system. In the model plant Arabidopsis thaliana, a family of 20 glutamate receptor-like proteins (GLRs) shares similarities to animal iGluRs in sequence and predicted secondary structure. However, the function of GLRs in plants is little known. In the present study, a serine site (Ser-860) of AtGLR3.7 phosphorylated by a calcium-dependent protein kinase (CDPK) was identified and confirmed by an in vitro kinase assay. Using a bimolecular fluorescence complementation and quartz crystal microbalance analyses, the physical interaction between AtGLR3.7 and the 14-3-3ω protein was confirmed. The mutation of Ser-860 to alanine abolished this interaction, indicating that Ser-860 is the 14-3-3ω binding site of AtGLR3.7. Compared with wild type, seed germination of the glr3.7-2 mutant was more sensitive to salt stress. However, the primary root growth of GLR3.7-S860A overexpression lines was less sensitive to salt stress than that of the wild-type line. In addition, the increase of cytosolic calcium ion concentration by salt stress was significantly lower in the glr3.7-2 mutant line than in the wild-type line. Moreover, association of 14-3-3 proteins to microsomal fractions was less in GLR3.7-S860A overexpression lines than in GLR3.7 overexpression line under 150 mM NaCl salt stress condition. Overall, our results indicated that GLR3.7 is involved in salt stress response in A. thaliana by affecting calcium signaling.
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Affiliation(s)
- Po-Hsun Wang
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Cheng-En Lee
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Yi-Sin Lin
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Man-Hsuan Lee
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Pei-Yuan Chen
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Hui-Chun Chang
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
| | - Ing-Feng Chang
- Institute of Plant Biology, National Taiwan University, Taipei, Taiwan
- Department of Life Science, National Taiwan University, Taipei, Taiwan
- Genome and Systems Biology Degree Program, National Taiwan University and Academia Sinica, Taipei, Taiwan
- *Correspondence: Ing-Feng Chang,
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29
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Kaur G, Pati PK. In silico insights on diverse interacting partners and phosphorylation sites of respiratory burst oxidase homolog (Rbohs) gene families from Arabidopsis and rice. BMC PLANT BIOLOGY 2018; 18:161. [PMID: 30097007 PMCID: PMC6086027 DOI: 10.1186/s12870-018-1378-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2017] [Accepted: 07/30/2018] [Indexed: 05/14/2023]
Abstract
BACKGROUND NADPH oxidase (Nox) is a critical enzyme involved in the generation of apoplastic superoxide (O2-), a type of reactive oxygen species (ROS) and hence regulate a wide range of biological functions in many organisms. Plant Noxes are the homologs of the catalytic subunit from mammalian NADPH oxidases and are known as respiratory burst oxidase homologs (Rbohs). Previous studies have highlighted their versatile roles in tackling different kind of stresses and in plant growth and development. In the current study, potential interacting partners and phosphorylation sites were predicted for Rboh proteins from two model species (10 Rbohs from Arabidopsis thaliana and 9 from Oryza sativa japonica). The present work is the first step towards in silico prediction of interacting partners and phosphorylation sites for Rboh proteins from two plant species. RESULTS In this work, an extensive range of potential partners (unique and common), leading to diverse functions were revealed from interaction networks and gene ontology classifications, where majority of AtRbohs and OsRbohs play role in stress-related activities, followed by cellular development. Further, 68 and 38 potential phosphorylation sites were identified in AtRbohs and OsRbohs, respectively. Their distribution, location and kinase specificities were also predicted and correlated with experimental data as well as verified with the other EF-hand containing proteins within both genomes. CONCLUSIONS Analysis of regulatory mechanisms including interaction with diverse partners and post-translational modifications like phosphorylation have provided insights regarding functional multiplicity of Rbohs. The bioinformatics-based workflow in the current study can be used to get insights for interacting partners and phosphorylation sites from Rbohs of other plant species.
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Affiliation(s)
- Gurpreet Kaur
- Department of Biotechnology, Guru Nanak Dev University (GNDU), Amritsar, Punjab, 143005, India
- Present Address: Quantitative Biology Center (QBiC), University of Tuebingen, 72076, Tuebingen, Germany
| | - Pratap Kumar Pati
- Department of Biotechnology, Guru Nanak Dev University (GNDU), Amritsar, Punjab, 143005, India.
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30
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Shi S, Li S, Asim M, Mao J, Xu D, Ullah Z, Liu G, Wang Q, Liu H. The Arabidopsis Calcium-Dependent Protein Kinases (CDPKs) and Their Roles in Plant Growth Regulation and Abiotic Stress Responses. Int J Mol Sci 2018; 19:E1900. [PMID: 29958430 PMCID: PMC6073581 DOI: 10.3390/ijms19071900] [Citation(s) in RCA: 93] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2018] [Accepted: 06/21/2018] [Indexed: 02/06/2023] Open
Abstract
As a ubiquitous secondary messenger in plant signaling systems, calcium ions (Ca2+) play essential roles in plant growth and development. Within the cellular signaling network, the accurate decoding of diverse Ca2+ signal is a fundamental molecular event. Calcium-dependent protein kinases (CDPKs), identified commonly in plants, are a kind of vital regulatory protein deciphering calcium signals triggered by various developmental and environmental stimuli. This review chiefly introduces Ca2+ distribution in plant cells, the classification of Arabidopsis thaliana CDPKs (AtCDPKs), the identification of the Ca2+-AtCDPK signal transduction mechanism and AtCDPKs’ functions involved in plant growth regulation and abiotic stress responses. The review presents a comprehensive overview of AtCDPKs and may contribute to the research of CDPKs in other plants.
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Affiliation(s)
- Sujuan Shi
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China.
| | - Shugui Li
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China.
- College of Agriculture, Qingdao Agricultural University, Qingdao 266109, China.
| | - Muhammad Asim
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China.
| | - Jingjing Mao
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China.
| | - Dizhi Xu
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China.
| | - Zia Ullah
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China.
| | - Guanshan Liu
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China.
| | - Qian Wang
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China.
| | - Haobao Liu
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China.
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Konrad KR, Maierhofer T, Hedrich R. Spatio-temporal Aspects of Ca2+ Signalling: Lessons from Guard Cells and Pollen Tubes. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:4986225. [PMID: 29701811 DOI: 10.1093/jxb/ery154] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2018] [Indexed: 05/06/2023]
Abstract
Changes in cytosolic Ca2+ concentration ([Ca2+]cyt) serve to transmit information in eukaryotic cells. The involvement of this second messenger in plant cell growth as well as osmotic- and water relations is well established. After almost 40 years of intense research on the coding and decoding of plant Ca2+ signals, numerous proteins involved in Ca2+ action have been identified. However, we are still far from understanding the complexity of Ca2+ networks. New in vivo Ca2+ imaging techniques combined with molecular genetics allow visualisation of spatio-temporal aspects of Ca2+ signalling. In parallel, cell biology together with protein biochemistry and electrophysiology are able to dissect information processing by this second messenger in space and time. Here we focus on the time-resolved changes in cellular events upon Ca2+ signals, concentrating on the two best-studied cell types, pollen tubes and guard cells. We put their signalling networks side by side, compare them with those of other cell types and discuss rapid signalling in the context of Ca2+ transients and oscillations to regulate ion homeostasis.
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Affiliation(s)
- K R Konrad
- University of Wuerzburg, Julius-Von-Sachs Institute for Biosciences, Department of Botany I, Wuerzburg, Germany
| | - T Maierhofer
- University of Wuerzburg, Julius-Von-Sachs Institute for Biosciences, Department of Botany I, Wuerzburg, Germany
| | - R Hedrich
- University of Wuerzburg, Julius-Von-Sachs Institute for Biosciences, Department of Botany I, Wuerzburg, Germany
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32
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Abscisic acid-induced degradation of Arabidopsis guanine nucleotide exchange factor requires calcium-dependent protein kinases. Proc Natl Acad Sci U S A 2018; 115:E4522-E4531. [PMID: 29686103 DOI: 10.1073/pnas.1719659115] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
Abscisic acid (ABA) plays essential roles in plant development and responses to environmental stress. ABA induces subcellular translocation and degradation of the guanine nucleotide exchange factor RopGEF1, thus facilitating ABA core signal transduction. However, the underlying mechanisms for ABA-triggered RopGEF1 trafficking/degradation remain unknown. Studies have revealed that RopGEFs associate with receptor-like kinases to convey developmental signals to small ROP GTPases. However, how the activities of RopGEFs are modulated is not well understood. Type 2C protein phosphatases stabilize the RopGEF1 protein, indicating that phosphorylation may trigger RopGEF1 trafficking and degradation. We have screened inhibitors followed by several protein kinase mutants and find that quadruple-mutant plants in the Arabidopsis calcium-dependent protein kinases (CPKs) cpk3/4/6/11 disrupt ABA-induced trafficking and degradation of RopGEF1. Moreover, cpk3/4/6/11 partially impairs ABA inhibition of cotyledon emergence. Several CPKs interact with RopGEF1. CPK4 binds to and phosphorylates RopGEF1 and promotes the degradation of RopGEF1. CPK-mediated phosphorylation of RopGEF1 at specific N-terminal serine residues causes the degradation of RopGEF1 and mutation of these sites also compromises the RopGEF1 overexpression phenotype in root hair development in Arabidopsis Our findings establish the physiological and molecular functions and relevance of CPKs in regulation of RopGEF1 and illuminate physiological roles of a CPK-GEF-ROP module in ABA signaling and plant development. We further discuss that CPK-dependent RopGEF degradation during abiotic stress could provide a mechanism for down-regulation of RopGEF-dependent growth responses.
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van Kleeff PJM, Gao J, Mol S, Zwart N, Zhang H, Li KW, de Boer AH. The Arabidopsis GORK K +-channel is phosphorylated by calcium-dependent protein kinase 21 (CPK21), which in turn is activated by 14-3-3 proteins. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2018; 125:219-231. [PMID: 29475088 DOI: 10.1016/j.plaphy.2018.02.013] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2017] [Revised: 02/11/2018] [Accepted: 02/13/2018] [Indexed: 05/23/2023]
Abstract
Potassium (K+) is a vital ion for many processes in the plant and fine-tuned ion channels control the K+-fluxes across the plasma membrane. GORK is an outward-rectifying K+-channel with important functions in stomatal closure and in root K+-homeostasis. In this study, post-translational modification of the Arabidopsis GORK ion channel and its regulation by 14-3-3 proteins was investigated. To investigate the possible interaction between GORK and 14-3-3s an in vivo pull-down from an Arabidopsis protein extract with recombinant GORK C-terminus (GORK-C) indeed identified endogenous 14-3-3s (LAMBDA, CHI, NU) as binding partners in a phosphorylation dependent manner. However, a direct interaction between 14-3-3's and GORK-C could not be demonstrated. Since the pull-down of 14-3-3s was phosphorylation dependent, we determined GORK-C as substrate for CPK21 phosphorylation and identified three CPK21 phospho-sites in the GORK protein (T344, S518 and S649). Moreover, interaction of 14-3-3 to CPK21 strongly stimulates its kinase activity; an effect that can result in increased GORK phosphorylation and change in activity. Using the non-invasive vibrating probe technique, we measured the predominantly GORK mediated salt induced K+-efflux from wild-type, gork, cpk21, aha2 and 14-3-3 mutant roots. The mutants cpk21 and aha2 did not show statistical significant differences compared to WT. However, two (out of six) 14-3-3 isoforms, CHI and PHI, have a clear function in the salt induced K+-efflux. In conclusion, our results show that GORK can be phosphorylated by CPK21 and suggest that 14-3-3 proteins control GORK activity through binding with and activation of CPK21.
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Affiliation(s)
- P J M van Kleeff
- Department of Structural Biology, Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081 HV, Amsterdam, The Netherlands.
| | - J Gao
- Department of Structural Biology, Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081 HV, Amsterdam, The Netherlands.
| | - S Mol
- Department of Structural Biology, Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081 HV, Amsterdam, The Netherlands.
| | - N Zwart
- Department of Structural Biology, Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081 HV, Amsterdam, The Netherlands.
| | - H Zhang
- Netherlands Proteomics Centre, Utrecht University - H.R. Kruyt gebouw, Padualaan 8, 3584 CH, Utrecht, The Netherlands.
| | - K W Li
- Department of Molecular and Cellular Neurobiology, Faculty of Earth and Life Sciences, Center for Neurogenomics and Cognitive Research, Neuroscience Campus, Amsterdam, The Netherlands.
| | - A H de Boer
- Department of Structural Biology, Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1085, 1081 HV, Amsterdam, The Netherlands.
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Revisiting paradigms of Ca2+ signaling protein kinase regulation in plants. Biochem J 2018; 475:207-223. [DOI: 10.1042/bcj20170022] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2017] [Revised: 12/07/2017] [Accepted: 12/08/2017] [Indexed: 12/15/2022]
Abstract
Calcium (Ca2+) serves as a universal second messenger in eukaryotic signal transduction. Understanding the Ca2+ activation kinetics of Ca2+ sensors is critical to understanding the cellular signaling mechanisms involved. In this review, we discuss the regulatory properties of two sensor classes: the Ca2+-dependent protein kinases (CPKs/CDPKs) and the calcineurin B-like (CBL) proteins that control the activity of CBL-interacting protein kinases (CIPKs) and identify emerging topics and some foundational points that are not well established experimentally. Most plant CPKs are activated by physiologically relevant Ca2+ concentrations except for those with degenerate EF hands, and new results suggest that the Ca2+-dependence of kinase activation may be modulated by both protein–protein interactions and CPK autophosphorylation. Early results indicated that activation of plant CPKs by Ca2+ occurred by relief of autoinhibition. However, recent studies of protist CDPKs suggest that intramolecular interactions between CDPK domains contribute allosteric control to CDPK activation. Further studies are required to elucidate the mechanisms regulating plant CPKs. With CBL–CIPKs, the two major activation mechanisms are thought to be (i) binding of Ca2+-bound CBL to the CIPK and (ii) phosphorylation of residues in the CIPK activation loop. However, the relative importance of these two mechanisms in regulating CIPK activity is unclear. Furthermore, information detailing activation by physiologically relevant [Ca2+] is lacking, such that the paradigm of CBLs as Ca2+ sensors still requires critical, experimental validation. Developing models of CPK and CIPK regulation is essential to understand how these kinases mediate Ca2+ signaling and to the design of experiments to test function in vivo.
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Wang Q, Yin X, Chen Q, Xiang N, Sun X, Yang Y, Yang Y. Genome-wide survey indicates diverse physiological roles of the turnip (Brassica rapa var. rapa) calcium-dependent protein kinase genes. Sci Rep 2017; 7:15803. [PMID: 29150669 PMCID: PMC5693941 DOI: 10.1038/s41598-017-16102-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2017] [Accepted: 11/07/2017] [Indexed: 11/28/2022] Open
Abstract
Calcium-dependent protein kinases (CDPKs) as crucial sensors of calcium concentration changes play important roles in responding to abiotic and biotic stresses. In this study, 55 BrrCDPK genes, which were phylogenetically clustered into four subfamilies, were identified. Chromosome locations indicated that the CDPK family in turnip expanded by segmental duplication and genome rearrangement. Moreover, gene expression profiles showed that different BrrCDPKs were expressed in specific tissues or stages. Transcript levels of BrrCDPKs indicated that they were involved in abiotic and biotic stresses and that paralogs exhibited functional divergence. Additionally, we identified 15 Rboh genes in turnip; the results of yeast two-hybrid analysis suggested that BrrRbohD1 interacted only with BrrCDPK10 and that BrrRbohD2 interacted with BrrCDPK4/7/9/10/17/22/23. Most of the genes play an important role in pst DC3000 defense by regulating the accumulation of H2O2 and stomatal closure. Our study may provide an important foundation for future functional analysis of BrrCDPKs and reveal further biological roles.
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Affiliation(s)
- Qiuli Wang
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming, 650204, China
- Plant Germplasm and Genomics Center, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- Institute of Tibetan Plateau Research at Kunming, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- School of Life Sciences, Yunnan University, Kunming, 650091, China
| | - Xin Yin
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming, 650204, China
- Plant Germplasm and Genomics Center, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- Institute of Tibetan Plateau Research at Kunming, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Qian Chen
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming, 650204, China
- Plant Germplasm and Genomics Center, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- Institute of Tibetan Plateau Research at Kunming, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Nan Xiang
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming, 650204, China
- Plant Germplasm and Genomics Center, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- Institute of Tibetan Plateau Research at Kunming, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Xudong Sun
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming, 650204, China
- Plant Germplasm and Genomics Center, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- Institute of Tibetan Plateau Research at Kunming, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Yunqiang Yang
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming, 650204, China.
- Plant Germplasm and Genomics Center, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
- Institute of Tibetan Plateau Research at Kunming, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
| | - Yongping Yang
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming, 650204, China.
- Plant Germplasm and Genomics Center, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
- Institute of Tibetan Plateau Research at Kunming, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
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Almadanim MC, Gonçalves NM, Rosa MTG, Alexandre BM, Cordeiro AM, Rodrigues M, Saibo NJM, Soares CM, Romão CV, Oliveira MM, Abreu IA. The rice cold-responsive calcium-dependent protein kinase OsCPK17 is regulated by alternative splicing and post-translational modifications. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH 2017; 1865:231-246. [PMID: 29100789 DOI: 10.1016/j.bbamcr.2017.10.010] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2017] [Revised: 10/16/2017] [Accepted: 10/29/2017] [Indexed: 12/12/2022]
Abstract
Plant calcium-dependent protein kinases (CDPKs) are key proteins implicated in calcium-mediated signaling pathways of a wide range of biological events in the organism. The action of each particular CDPK is strictly regulated by many mechanisms in order to ensure an accurate signal translation and the activation of the adequate response processes. In this work, we investigated the regulation of a CDPK involved in rice cold stress response, OsCPK17, to better understand its mode of action. We identified two new alternative splicing (AS) mRNA forms of OsCPK17 encoding truncated versions of the protein, missing the CDPK activation domain. We analyzed the expression patterns of all AS variants in rice tissues and examined their subcellular localization in onion epidermal cells. The results indicate that the AS of OsCPK17 putatively originates truncated forms of the protein with distinct functions, and different subcellular and tissue distributions. Additionally, we addressed the regulation of OsCPK17 by post-translational modifications in several in vitro experiments. Our analysis indicated that OsCPK17 activity depends on its structural rearrangement induced by calcium binding, and that the protein can be autophosphorylated. The identified phosphorylation sites mostly populate the OsCPK17 N-terminal domain. Exceptions are phosphosites T107 and S136 in the kinase domain and S558 in the C-terminal domain. These phosphosites seem conserved in CDPKs and may reflect a common regulatory mechanism for this protein family.
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Affiliation(s)
- M Cecília Almadanim
- ITQB-NOVA, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Avenida da República, 2780-157 Oeiras, Portugal
| | - Nuno M Gonçalves
- ITQB-NOVA, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Avenida da República, 2780-157 Oeiras, Portugal
| | - Margarida T G Rosa
- ITQB-NOVA, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Avenida da República, 2780-157 Oeiras, Portugal
| | - Bruno M Alexandre
- IBET, Instituto de Biologia Experimental e Tecnológica, 2780-157 Oeiras, Portugal
| | - André M Cordeiro
- ITQB-NOVA, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Avenida da República, 2780-157 Oeiras, Portugal
| | - Mafalda Rodrigues
- ITQB-NOVA, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Avenida da República, 2780-157 Oeiras, Portugal
| | - Nelson J M Saibo
- ITQB-NOVA, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Avenida da República, 2780-157 Oeiras, Portugal; IBET, Instituto de Biologia Experimental e Tecnológica, 2780-157 Oeiras, Portugal
| | - Cláudio M Soares
- ITQB-NOVA, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Avenida da República, 2780-157 Oeiras, Portugal
| | - Célia V Romão
- ITQB-NOVA, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Avenida da República, 2780-157 Oeiras, Portugal
| | - M Margarida Oliveira
- ITQB-NOVA, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Avenida da República, 2780-157 Oeiras, Portugal; IBET, Instituto de Biologia Experimental e Tecnológica, 2780-157 Oeiras, Portugal
| | - Isabel A Abreu
- ITQB-NOVA, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Avenida da República, 2780-157 Oeiras, Portugal; IBET, Instituto de Biologia Experimental e Tecnológica, 2780-157 Oeiras, Portugal.
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37
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Underwood W, Somerville SC. Phosphorylation is required for the pathogen defense function of the Arabidopsis PEN3 ABC transporter. PLANT SIGNALING & BEHAVIOR 2017; 12:e1379644. [PMID: 28910579 PMCID: PMC5647949 DOI: 10.1080/15592324.2017.1379644] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2017] [Accepted: 09/11/2017] [Indexed: 05/18/2023]
Abstract
The Arabidopsis PEN3 ABC transporter accumulates at sites of pathogen detection, where it is involved in defense against a number of pathogens. Perception of PAMPs by pattern recognition receptors initiates recruitment of PEN3 and also leads to PEN3 phosphorylation at multiple amino acid residues. Whether PAMP-induced phosphorylation of PEN3 is important for its defense function or focal recruitment has not been addressed. In this study, we evaluated the role of PEN3 phosphorylation in modulating the localization and defense function of the transporter. We report that PEN3 phosphorylation is critical for its function in defense, but dispensable for recruitment to powdery mildew penetration sites. These results indicate that PAMP-induced phosphorylation is likely to regulate the transport activity of PEN3.
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Affiliation(s)
- William Underwood
- Energy Biosciences Institute, University of California, Berkeley, CA, USA
- USDA-ARS Sunflower and Plant Biology Research Unit, Red River Valley Agricultural Research Center, Fargo, ND, USA
- CONTACT William Underwood USDA-ARS Sunflower and Plant Biology Research Unit, Northern Crop Science Laboratory, 1605 Albrecht Blvd N, Fargo 58102-2765, ND, USA
| | - Shauna C. Somerville
- Energy Biosciences Institute, University of California, Berkeley, CA, USA
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, USA
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38
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Jha SK, Malik S, Sharma M, Pandey A, Pandey GK. Recent Advances in Substrate Identification of Protein Kinases in Plants and Their Role in Stress Management. Curr Genomics 2017; 18:523-541. [PMID: 29204081 PMCID: PMC5684648 DOI: 10.2174/1389202918666170228142703] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2016] [Revised: 10/13/2016] [Accepted: 11/11/2016] [Indexed: 12/20/2022] Open
Abstract
Protein phosphorylation-dephosphorylation is a well-known regulatory mechanism in biological systems and has become one of the significant means of protein function regulation, modulating most of the biological processes. Protein kinases play vital role in numerous cellular processes. Kinases transduce external signal into responses such as growth, immunity and stress tolerance through phosphorylation of their target proteins. In order to understand these cellular processes at the molecular level, one needs to be aware of the different substrates targeted by protein kinases. Advancement in tools and techniques has bestowed practice of multiple approaches that enable target identification of kinases. However, so far none of the methodologies has been proved to be as good as a panacea for the substrate identification. In this review, the recent advances that have been made in the identifications of putative substrates and the implications of these kinases and their substrates in stress management are discussed.
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Affiliation(s)
- Saroj K Jha
- Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, Dhaula Kuan, New Delhi-110021, India
| | - Shikha Malik
- Department of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, Wisconsin, USA
| | - Manisha Sharma
- Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, Dhaula Kuan, New Delhi-110021, India
| | - Amita Pandey
- Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, Dhaula Kuan, New Delhi-110021, India
| | - Girdhar K Pandey
- Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, Dhaula Kuan, New Delhi-110021, India
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39
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Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature 2017; 545:311-316. [PMID: 28489820 DOI: 10.1038/nature22077] [Citation(s) in RCA: 326] [Impact Index Per Article: 46.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2016] [Accepted: 03/16/2017] [Indexed: 12/17/2022]
Abstract
Nutrient signalling integrates and coordinates gene expression, metabolism and growth. However, its primary molecular mechanisms remain incompletely understood in plants and animals. Here we report unique Ca2+ signalling triggered by nitrate with live imaging of an ultrasensitive biosensor in Arabidopsis leaves and roots. A nitrate-sensitized and targeted functional genomic screen identifies subgroup III Ca2+-sensor protein kinases (CPKs) as master regulators that orchestrate primary nitrate responses. A chemical switch with the engineered mutant CPK10(M141G) circumvents embryo lethality and enables conditional analyses of cpk10 cpk30 cpk32 triple mutants to define comprehensive nitrate-associated regulatory and developmental programs. Nitrate-coupled CPK signalling phosphorylates conserved NIN-LIKE PROTEIN (NLP) transcription factors to specify the reprogramming of gene sets for downstream transcription factors, transporters, nitrogen assimilation, carbon/nitrogen metabolism, redox, signalling, hormones and proliferation. Conditional cpk10 cpk30 cpk32 and nlp7 mutants similarly impair nitrate-stimulated system-wide shoot growth and root establishment. The nutrient-coupled Ca2+ signalling network integrates transcriptome and cellular metabolism with shoot-root coordination and developmental plasticity in shaping organ biomass and architecture.
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40
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Eaves DJ, Haque T, Tudor RL, Barron Y, Zampronio CG, Cotton NPJ, de Graaf BHJ, White SA, Cooper HJ, Franklin FCH, Harper JF, Franklin-Tong VE. Identification of Phosphorylation Sites Altering Pollen Soluble Inorganic Pyrophosphatase Activity. PLANT PHYSIOLOGY 2017; 173:1606-1616. [PMID: 28126844 PMCID: PMC5338664 DOI: 10.1104/pp.16.01450] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2016] [Accepted: 01/13/2017] [Indexed: 05/23/2023]
Abstract
Protein phosphorylation regulates numerous cellular processes. Identifying the substrates and protein kinases involved is vital to understand how these important posttranslational modifications modulate biological function in eukaryotic cells. Pyrophosphatases catalyze the hydrolysis of inorganic phosphate (PPi) to inorganic phosphate Pi, driving biosynthetic reactions; they are essential for low cytosolic inorganic phosphate. It was suggested recently that posttranslational regulation of Family I soluble inorganic pyrophosphatases (sPPases) may affect their activity. We previously demonstrated that two pollen-expressed sPPases, Pr-p26.1a and Pr-p26.1b, from the flowering plant Papaver rhoeas were inhibited by phosphorylation. Despite the potential significance, there is a paucity of data on sPPase phosphorylation and regulation. Here, we used liquid chromatographic tandem mass spectrometry to map phosphorylation sites to the otherwise divergent amino-terminal extensions on these pollen sPPases. Despite the absence of reports in the literature on mapping phosphorylation sites on sPPases, a database survey of various proteomes identified a number of examples, suggesting that phosphorylation may be a more widely used mechanism to regulate these enzymes. Phosphomimetic mutants of Pr-p26.1a/b significantly and differentially reduced PPase activities by up to 2.5-fold at pH 6.8 and 52% in the presence of Ca2+ and hydrogen peroxide over unmodified proteins. This indicates that phosphoregulation of key sites can inhibit the catalytic responsiveness of these proteins in concert with key intracellular events. As sPPases are essential for many metabolic pathways in eukaryotic cells, our findings identify the phosphorylation of sPPases as a potential master regulatory mechanism that could be used to attenuate metabolism.
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Affiliation(s)
- Deborah J Eaves
- School of Biosciences, College of Life and Environmental Sciences, University of Birmingham, B15 2TT Birmingham, United Kingdom (D.J.E., T.H., R.L.T., C.G.Z., N.P.J.C., B.H.J.d.e.G., S.A.W., H.J.C., F.C.H.F., V.E.F.-T.); and
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada 89557 (Y.B., J.F.H.)
| | - Tamanna Haque
- School of Biosciences, College of Life and Environmental Sciences, University of Birmingham, B15 2TT Birmingham, United Kingdom (D.J.E., T.H., R.L.T., C.G.Z., N.P.J.C., B.H.J.d.e.G., S.A.W., H.J.C., F.C.H.F., V.E.F.-T.); and
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada 89557 (Y.B., J.F.H.)
| | - Richard L Tudor
- School of Biosciences, College of Life and Environmental Sciences, University of Birmingham, B15 2TT Birmingham, United Kingdom (D.J.E., T.H., R.L.T., C.G.Z., N.P.J.C., B.H.J.d.e.G., S.A.W., H.J.C., F.C.H.F., V.E.F.-T.); and
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada 89557 (Y.B., J.F.H.)
| | - Yoshimi Barron
- School of Biosciences, College of Life and Environmental Sciences, University of Birmingham, B15 2TT Birmingham, United Kingdom (D.J.E., T.H., R.L.T., C.G.Z., N.P.J.C., B.H.J.d.e.G., S.A.W., H.J.C., F.C.H.F., V.E.F.-T.); and
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada 89557 (Y.B., J.F.H.)
| | - Cleidiane G Zampronio
- School of Biosciences, College of Life and Environmental Sciences, University of Birmingham, B15 2TT Birmingham, United Kingdom (D.J.E., T.H., R.L.T., C.G.Z., N.P.J.C., B.H.J.d.e.G., S.A.W., H.J.C., F.C.H.F., V.E.F.-T.); and
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada 89557 (Y.B., J.F.H.)
| | - Nicholas P J Cotton
- School of Biosciences, College of Life and Environmental Sciences, University of Birmingham, B15 2TT Birmingham, United Kingdom (D.J.E., T.H., R.L.T., C.G.Z., N.P.J.C., B.H.J.d.e.G., S.A.W., H.J.C., F.C.H.F., V.E.F.-T.); and
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada 89557 (Y.B., J.F.H.)
| | - Barend H J de Graaf
- School of Biosciences, College of Life and Environmental Sciences, University of Birmingham, B15 2TT Birmingham, United Kingdom (D.J.E., T.H., R.L.T., C.G.Z., N.P.J.C., B.H.J.d.e.G., S.A.W., H.J.C., F.C.H.F., V.E.F.-T.); and
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada 89557 (Y.B., J.F.H.)
| | - Scott A White
- School of Biosciences, College of Life and Environmental Sciences, University of Birmingham, B15 2TT Birmingham, United Kingdom (D.J.E., T.H., R.L.T., C.G.Z., N.P.J.C., B.H.J.d.e.G., S.A.W., H.J.C., F.C.H.F., V.E.F.-T.); and
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada 89557 (Y.B., J.F.H.)
| | - Helen J Cooper
- School of Biosciences, College of Life and Environmental Sciences, University of Birmingham, B15 2TT Birmingham, United Kingdom (D.J.E., T.H., R.L.T., C.G.Z., N.P.J.C., B.H.J.d.e.G., S.A.W., H.J.C., F.C.H.F., V.E.F.-T.); and
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada 89557 (Y.B., J.F.H.)
| | - F Christopher H Franklin
- School of Biosciences, College of Life and Environmental Sciences, University of Birmingham, B15 2TT Birmingham, United Kingdom (D.J.E., T.H., R.L.T., C.G.Z., N.P.J.C., B.H.J.d.e.G., S.A.W., H.J.C., F.C.H.F., V.E.F.-T.); and
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada 89557 (Y.B., J.F.H.)
| | - Jeffery F Harper
- School of Biosciences, College of Life and Environmental Sciences, University of Birmingham, B15 2TT Birmingham, United Kingdom (D.J.E., T.H., R.L.T., C.G.Z., N.P.J.C., B.H.J.d.e.G., S.A.W., H.J.C., F.C.H.F., V.E.F.-T.); and
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada 89557 (Y.B., J.F.H.)
| | - Vernonica E Franklin-Tong
- School of Biosciences, College of Life and Environmental Sciences, University of Birmingham, B15 2TT Birmingham, United Kingdom (D.J.E., T.H., R.L.T., C.G.Z., N.P.J.C., B.H.J.d.e.G., S.A.W., H.J.C., F.C.H.F., V.E.F.-T.); and
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada 89557 (Y.B., J.F.H.)
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Ormancey M, Thuleau P, Mazars C, Cotelle V. CDPKs and 14-3-3 Proteins: Emerging Duo in Signaling. TRENDS IN PLANT SCIENCE 2017; 22:263-272. [PMID: 28065409 DOI: 10.1016/j.tplants.2016.11.007] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2016] [Revised: 11/02/2016] [Accepted: 11/10/2016] [Indexed: 05/19/2023]
Abstract
Calcium-dependent protein kinases (CDPKs) are Ca2+-sensors that play pivotal roles in plant development and stress responses. They have the unique ability to directly translate intracellular Ca2+ signals into reversible phosphorylation events of diverse substrates which can mediate interactions with 14-3-3 proteins to modulate protein functions. Recent studies have revealed roles for the coordinated action of CDPKs and 14-3-3s in regulating diverse aspects of plant biology including metabolism, development, and stress responses. We review here the underlying interaction and cross-regulation of the two signaling proteins, and we discuss how this insight has led to the emerging concept of CDPK/14-3-3 signaling modules that could contribute to response specificity.
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Affiliation(s)
- Mélanie Ormancey
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, Auzeville, BP 42617, 31326 Castanet Tolosan, France
| | - Patrice Thuleau
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, Auzeville, BP 42617, 31326 Castanet Tolosan, France
| | - Christian Mazars
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, Auzeville, BP 42617, 31326 Castanet Tolosan, France
| | - Valérie Cotelle
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, Auzeville, BP 42617, 31326 Castanet Tolosan, France.
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Michard E, Simon AA, Tavares B, Wudick MM, Feijó JA. Signaling with Ions: The Keystone for Apical Cell Growth and Morphogenesis in Pollen Tubes. PLANT PHYSIOLOGY 2017; 173:91-111. [PMID: 27895207 PMCID: PMC5210754 DOI: 10.1104/pp.16.01561] [Citation(s) in RCA: 92] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2016] [Accepted: 11/19/2016] [Indexed: 05/18/2023]
Abstract
Ion homeostasis and signaling are crucial to regulate pollen tube growth and morphogenesis and affect upstream membrane transporters and downstream targets.
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Affiliation(s)
- Erwan Michard
- Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland 20742-5815 (E.M., A.A.S., M.M.W., J.A.F.); and
- Instituto Gulbenkian de Ciência, Oeiras 2780-901, Portugal (B.T.)
| | - Alexander A Simon
- Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland 20742-5815 (E.M., A.A.S., M.M.W., J.A.F.); and
- Instituto Gulbenkian de Ciência, Oeiras 2780-901, Portugal (B.T.)
| | - Bárbara Tavares
- Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland 20742-5815 (E.M., A.A.S., M.M.W., J.A.F.); and
- Instituto Gulbenkian de Ciência, Oeiras 2780-901, Portugal (B.T.)
| | - Michael M Wudick
- Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland 20742-5815 (E.M., A.A.S., M.M.W., J.A.F.); and
- Instituto Gulbenkian de Ciência, Oeiras 2780-901, Portugal (B.T.)
| | - José A Feijó
- Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland 20742-5815 (E.M., A.A.S., M.M.W., J.A.F.); and
- Instituto Gulbenkian de Ciência, Oeiras 2780-901, Portugal (B.T.)
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Grandellis C, Fantino E, Muñiz García MN, Bialer MG, Santin F, Capiati DA, Ulloa RM. StCDPK3 Phosphorylates In Vitro Two Transcription Factors Involved in GA and ABA Signaling in Potato: StRSG1 and StABF1. PLoS One 2016; 11:e0167389. [PMID: 27907086 PMCID: PMC5131985 DOI: 10.1371/journal.pone.0167389] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2016] [Accepted: 11/14/2016] [Indexed: 12/13/2022] Open
Abstract
Calcium-dependent protein kinases, CDPKs, decode calcium (Ca2+) transients and initiate downstream responses in plants. In order to understand how CDPKs affect plant physiology, their specific target proteins must be identified. In tobacco, the bZIP transcription factor Repression of Shoot Growth (NtRSG) that modulates gibberellin (GA) content is a specific target of NtCDPK1. StCDPK3 from potato is homologous (88% identical) to NtCDPK1 even in its N-terminal variable domain. In this work, we observe that NtRSG is also phosphorylated by StCDPK3. The potato RSG family of transcription factors is composed of three members that share similar features. The closest homologue to NtRSG, which was named StRSG1, was amplified and sequenced. qRT-PCR data indicate that StRSG1 is mainly expressed in petioles, stems, lateral buds, and roots. In addition, GA treatment affected StRSG1 expression. StCDPK3 transcripts were detected in leaves, petioles, stolons, roots, and dormant tubers, and transcript levels were modified in response to GA. The recombinant StRSG1-GST protein was produced and tested as a substrate for StCDPK3 and StCDPK1. 6xHisStCDPK3 was able to phosphorylate the potato StRSG1 in a Ca2+-dependent way, while 6xHisStCDPK1 could not. StCDPK3 also interacts and phosphorylates the transcription factor StABF1 (ABRE binding factor 1) involved in ABA signaling, as shown by EMSA and phosphorylation assays. StABF1 transcripts were mainly detected in roots, stems, and stolons. Our data suggest that StCDPK3 could be involved in the cross-talk between ABA and GA signaling at the onset of tuber development.
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Affiliation(s)
- Carolina Grandellis
- Institute of Genetic Engineering and Molecular Biology (INGEBI), National Research Council (CONICET) Vuelta de Obligado, 2 piso, Buenos Aires, Argentina
| | - Elisa Fantino
- Institute of Genetic Engineering and Molecular Biology (INGEBI), National Research Council (CONICET) Vuelta de Obligado, 2 piso, Buenos Aires, Argentina
| | - María Noelia Muñiz García
- Institute of Genetic Engineering and Molecular Biology (INGEBI), National Research Council (CONICET) Vuelta de Obligado, 2 piso, Buenos Aires, Argentina
| | - Magalí Graciela Bialer
- Institute of Genetic Engineering and Molecular Biology (INGEBI), National Research Council (CONICET) Vuelta de Obligado, 2 piso, Buenos Aires, Argentina
| | - Franco Santin
- Institute of Genetic Engineering and Molecular Biology (INGEBI), National Research Council (CONICET) Vuelta de Obligado, 2 piso, Buenos Aires, Argentina
| | - Daniela Andrea Capiati
- Institute of Genetic Engineering and Molecular Biology (INGEBI), National Research Council (CONICET) Vuelta de Obligado, 2 piso, Buenos Aires, Argentina
- Biochemistry Department, School of Exact and Natural Sciences, University of Buenos Aires, Buenos Aires, Argentina
| | - Rita María Ulloa
- Institute of Genetic Engineering and Molecular Biology (INGEBI), National Research Council (CONICET) Vuelta de Obligado, 2 piso, Buenos Aires, Argentina
- Biochemistry Department, School of Exact and Natural Sciences, University of Buenos Aires, Buenos Aires, Argentina
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Reimer-Michalski EM, Conrath U. Innate immune memory in plants. Semin Immunol 2016; 28:319-27. [PMID: 27264335 DOI: 10.1016/j.smim.2016.05.006] [Citation(s) in RCA: 76] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/11/2016] [Revised: 05/12/2016] [Accepted: 05/17/2016] [Indexed: 12/26/2022]
Abstract
The plant innate immune system comprises local and systemic immune responses. Systemic plant immunity develops after foliar infection by microbial pathogens, upon root colonization by certain microbes, or in response to physical injury. The systemic plant immune response to localized foliar infection is associated with elevated levels of pattern-recognition receptors, accumulation of dormant signaling enzymes, and alterations in chromatin state. Together, these systemic responses provide a memory to the initial infection by priming the remote leaves for enhanced defense and immunity to reinfection. The plant innate immune system thus builds immunological memory by utilizing mechanisms and components that are similar to those employed in the trained innate immune response of jawed vertebrates. Therefore, there seems to be conservation, or convergence, in the evolution of innate immune memory in plants and vertebrates.
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Affiliation(s)
| | - Uwe Conrath
- Department of Plant Physiology, RWTH Aachen University, Aachen 52056, Germany.
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Simeunovic A, Mair A, Wurzinger B, Teige M. Know where your clients are: subcellular localization and targets of calcium-dependent protein kinases. JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:3855-72. [PMID: 27117335 DOI: 10.1093/jxb/erw157] [Citation(s) in RCA: 76] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Calcium-dependent protein kinases (CDPKs) are at the forefront of decoding transient Ca(2+) signals into physiological responses. They play a pivotal role in many aspects of plant life starting from pollen tube growth, during plant development, and in stress response to senescence and cell death. At the cellular level, Ca(2+) signals have a distinct, narrow distribution, thus requiring a conjoined localization of the decoders. Accordingly, most CDPKs have a distinct subcellular distribution which enables them to 'sense' the local Ca(2+) concentration and to interact specifically with their targets. Here we present a comprehensive overview of identified CDPK targets and discuss them in the context of kinase-substrate specificity and subcellular distribution of the CDPKs. This is particularly relevant for calcium-mediated phosphorylation where different CDPKs, as well as other kinases, were frequently reported to be involved in the regulation of the same target. However, often these studies were not performed in an in situ context. Thus, considering the specific expression patterns, distinct subcellular distribution, and different Ca(2+) affinities of CDPKs will narrow down the number of potential CDPKs for one given target. A number of aspects still remain unresolved, giving rise to pending questions for future research.
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Affiliation(s)
- Andrea Simeunovic
- Department of Ecogenomics and Systems Biology, University of Vienna, Althanstr. 14, 1090 Vienna, Austria
| | - Andrea Mair
- Department of Ecogenomics and Systems Biology, University of Vienna, Althanstr. 14, 1090 Vienna, Austria
| | - Bernhard Wurzinger
- Department of Ecogenomics and Systems Biology, University of Vienna, Althanstr. 14, 1090 Vienna, Austria
| | - Markus Teige
- Department of Ecogenomics and Systems Biology, University of Vienna, Althanstr. 14, 1090 Vienna, Austria
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Di Giorgio JAP, Bienert GP, Ayub ND, Yaneff A, Barberini ML, Mecchia MA, Amodeo G, Soto GC, Muschietti JP. Pollen-Specific Aquaporins NIP4;1 and NIP4;2 Are Required for Pollen Development and Pollination in Arabidopsis thaliana. THE PLANT CELL 2016; 28:1053-77. [PMID: 27095837 PMCID: PMC4904668 DOI: 10.1105/tpc.15.00776] [Citation(s) in RCA: 58] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2015] [Revised: 03/22/2016] [Accepted: 04/14/2016] [Indexed: 05/18/2023]
Abstract
In flowers with dry stigmas, pollen development, pollination, and pollen tube growth require spatial and temporal regulation of water and nutrient transport. To better understand the molecular mechanisms involved in reproductive processes, we characterized NIP4;1 and NIP4;2, two pollen-specific aquaporins of Arabidopsis thaliana. NIP4;1 and NIP4;2 are paralogs found exclusively in the angiosperm lineage. Although they have 84% amino acid identity, they displayed different expression patterns. NIP4;1 has low expression levels in mature pollen, while NIP4;2 expression peaks during pollen tube growth. Additionally, NIP4;1pro:GUS flowers showed GUS activity in mature pollen and pollen tubes, whereas NIP4;2pro:GUS flowers only in pollen tubes. Single T-DNA mutants and double artificial microRNA knockdowns had fewer seeds per silique and reduced pollen germination and pollen tube length. Transport assays in oocytes showed NIP4;1 and NIP4;2 function as water and nonionic channels. We also found that NIP4;1 and NIP4;2 C termini are phosphorylated by a pollen-specific CPK that modifies their water permeability. Survival assays in yeast indicated that NIP4;1 also transports ammonia, urea, boric acid, and H2O2 Thus, we propose that aquaporins NIP4;1 and NIP4;2 are exclusive components of the reproductive apparatus of angiosperms with partially redundant roles in pollen development and pollination.
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Affiliation(s)
- Juliana Andrea Pérez Di Giorgio
- Instituto de Investigaciones en Ingeniería Genética y Biología Molecular, Dr. Héctor Torres (INGEBI-CONICET), C1428ADN Buenos Aires, Argentina
| | - Gerd Patrick Bienert
- Metalloid Transport Group, Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research, D-06466 Gatersleben, Germany
| | - Nicolás Daniel Ayub
- Instituto de Genética Ewald A. Favret (CICVyA-INTA), Castelar, CC25 (1712) Buenos Aires, Argentina Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), C1033AAJ Buenos Aires, Argentina
| | - Agustín Yaneff
- Instituto de Biodiversidad y Biología Experimental y Aplicada (IBBEA-CONICET-UBA), Intendente Güiraldes 2160, Ciudad Universitaria, Pabellón II, C1428EGA Buenos Aires, Argentina Departamento de Biodiversidad y Biología Experimental, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Intendente Güiraldes 2160, Ciudad Universitaria, Pabellón II, C1428EGA Buenos Aires, Argentina
| | - María Laura Barberini
- Instituto de Investigaciones en Ingeniería Genética y Biología Molecular, Dr. Héctor Torres (INGEBI-CONICET), C1428ADN Buenos Aires, Argentina
| | - Martín Alejandro Mecchia
- Instituto de Investigaciones en Ingeniería Genética y Biología Molecular, Dr. Héctor Torres (INGEBI-CONICET), C1428ADN Buenos Aires, Argentina
| | - Gabriela Amodeo
- Instituto de Biodiversidad y Biología Experimental y Aplicada (IBBEA-CONICET-UBA), Intendente Güiraldes 2160, Ciudad Universitaria, Pabellón II, C1428EGA Buenos Aires, Argentina Departamento de Biodiversidad y Biología Experimental, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Intendente Güiraldes 2160, Ciudad Universitaria, Pabellón II, C1428EGA Buenos Aires, Argentina
| | - Gabriela Cynthia Soto
- Instituto de Investigaciones en Ingeniería Genética y Biología Molecular, Dr. Héctor Torres (INGEBI-CONICET), C1428ADN Buenos Aires, Argentina Instituto de Genética Ewald A. Favret (CICVyA-INTA), Castelar, CC25 (1712) Buenos Aires, Argentina Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), C1033AAJ Buenos Aires, Argentina
| | - Jorge Prometeo Muschietti
- Instituto de Investigaciones en Ingeniería Genética y Biología Molecular, Dr. Héctor Torres (INGEBI-CONICET), C1428ADN Buenos Aires, Argentina Departamento de Biodiversidad y Biología Experimental, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Intendente Güiraldes 2160, Ciudad Universitaria, Pabellón II, C1428EGA Buenos Aires, Argentina
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Lefoulon C, Boeglin M, Moreau B, Véry AA, Szponarski W, Dauzat M, Michard E, Gaillard I, Chérel I. The Arabidopsis AtPP2CA Protein Phosphatase Inhibits the GORK K+ Efflux Channel and Exerts a Dominant Suppressive Effect on Phosphomimetic-activating Mutations. J Biol Chem 2016; 291:6521-33. [PMID: 26801610 DOI: 10.1074/jbc.m115.711309] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2015] [Indexed: 12/13/2022] Open
Abstract
The regulation of the GORK (Guard Cell Outward Rectifying) Shaker channel mediating a massive K(+) efflux in Arabidopsis guard cells by the phosphatase AtPP2CA was investigated. Unlike the gork mutant, the atpp2ca mutants displayed a phenotype of reduced transpiration. We found that AtPP2CA interacts physically with GORK and inhibits GORK activity in Xenopus oocytes. Several amino acid substitutions in the AtPP2CA active site, including the dominant interfering G145D mutation, disrupted the GORK-AtPP2CA interaction, meaning that the native conformation of the AtPP2CA active site is required for the GORK-AtPP2CA interaction. Furthermore, two serines in the GORK ankyrin domain that mimic phosphorylation (Ser to Glu) or dephosphorylation (Ser to Ala) were mutated. Mutations mimicking phosphorylation led to a significant increase in GORK activity, whereas mutations mimicking dephosphorylation had no effect on GORK. In Xenopus oocytes, the interaction of AtPP2CA with "phosphorylated" or "dephosphorylated" GORK systematically led to inhibition of the channel to the same baseline level. Single-channel recordings indicated that the GORK S722E mutation increases the open probability of the channel in the absence, but not in the presence, of AtPP2CA. The dephosphorylation-independent inactivation mechanism of GORK by AtPP2CA is discussed in relation with well known conformational changes in animal Shaker-like channels that lead to channel opening and closing. In plants, PP2C activity would control the stomatal aperture by regulating both GORK and SLAC1, the two main channels required for stomatal closure.
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Affiliation(s)
- Cécile Lefoulon
- From the Laboratoire de Biochimie et Physiologie Moléculaire des Plantes, CNRS/INRA/SupAgro/UM2, Unité Mixte de Recherche (UMR) 5004, 2 Place Viala, 34060 Montpellier Cedex, France and
| | - Martin Boeglin
- From the Laboratoire de Biochimie et Physiologie Moléculaire des Plantes, CNRS/INRA/SupAgro/UM2, Unité Mixte de Recherche (UMR) 5004, 2 Place Viala, 34060 Montpellier Cedex, France and
| | - Bertrand Moreau
- From the Laboratoire de Biochimie et Physiologie Moléculaire des Plantes, CNRS/INRA/SupAgro/UM2, Unité Mixte de Recherche (UMR) 5004, 2 Place Viala, 34060 Montpellier Cedex, France and
| | - Anne-Aliénor Véry
- From the Laboratoire de Biochimie et Physiologie Moléculaire des Plantes, CNRS/INRA/SupAgro/UM2, Unité Mixte de Recherche (UMR) 5004, 2 Place Viala, 34060 Montpellier Cedex, France and
| | - Wojciech Szponarski
- From the Laboratoire de Biochimie et Physiologie Moléculaire des Plantes, CNRS/INRA/SupAgro/UM2, Unité Mixte de Recherche (UMR) 5004, 2 Place Viala, 34060 Montpellier Cedex, France and
| | - Myriam Dauzat
- the Laboratoire d'Ecophysiologie des Plantes sous Stress Environnementaux, INRA/SupAgro, UMR 759, 2 Place Viala, 34060 Montpellier Cedex, France
| | - Erwan Michard
- From the Laboratoire de Biochimie et Physiologie Moléculaire des Plantes, CNRS/INRA/SupAgro/UM2, Unité Mixte de Recherche (UMR) 5004, 2 Place Viala, 34060 Montpellier Cedex, France and
| | - Isabelle Gaillard
- From the Laboratoire de Biochimie et Physiologie Moléculaire des Plantes, CNRS/INRA/SupAgro/UM2, Unité Mixte de Recherche (UMR) 5004, 2 Place Viala, 34060 Montpellier Cedex, France and
| | - Isabelle Chérel
- From the Laboratoire de Biochimie et Physiologie Moléculaire des Plantes, CNRS/INRA/SupAgro/UM2, Unité Mixte de Recherche (UMR) 5004, 2 Place Viala, 34060 Montpellier Cedex, France and
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Campe R, Langenbach C, Leissing F, Popescu GV, Popescu SC, Goellner K, Beckers GJM, Conrath U. ABC transporter PEN3/PDR8/ABCG36 interacts with calmodulin that, like PEN3, is required for Arabidopsis nonhost resistance. THE NEW PHYTOLOGIST 2016; 209:294-306. [PMID: 26315018 DOI: 10.1111/nph.13582] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2015] [Accepted: 06/30/2015] [Indexed: 05/20/2023]
Abstract
Nonhost resistance (NHR) is the most prevalent form of plant immunity. In Arabidopsis, NHR requires membrane-localized ATP-binding cassette (ABC) transporter PENETRATION (PEN) 3. Upon perception of pathogen-associated molecular patterns, PEN3 becomes phosphorylated, suggestive of PEN3 regulation by post-translational modification. Here, we investigated the PEN3 protein interaction network. We probed the Arabidopsis protein microarray AtPMA-5000 with the N-terminal cytoplasmic domain of PEN3. Several of the proteins identified to interact with PEN3 in vitro represent cellular Ca(2+) sensors, including calmodulin (CaM) 3, CaM7 and several CaM-like proteins, pointing to the importance of Ca(2+) sensing to PEN3-mediated NHR. We demonstrated co-localization of PEN3 and CaM7, and we confirmed PEN3-CaM interaction in vitro and in vivo by PEN3 pull-down with CaM Sepharose, CaM overlay assay and bimolecular fluorescence complementation. We also show that just like in pen3, NHR to the nonadapted fungal pathogens Phakopsora pachyrhizi and Blumeria graminis f.sp. hordei is compromised in the Arabidopsis cam7 and pen3 cam7 mutants. Our study discloses CaM7 as a PEN3-interacting protein crucial to Arabidopsis NHR and emphasizes the importance of Ca(2+) sensing to plant immunity.
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Affiliation(s)
- Ruth Campe
- Department of Plant Physiology, RWTH Aachen University, Aachen, 52056, Germany
| | - Caspar Langenbach
- Department of Plant Physiology, RWTH Aachen University, Aachen, 52056, Germany
| | - Franz Leissing
- Department of Plant Physiology, RWTH Aachen University, Aachen, 52056, Germany
| | - George V Popescu
- Boyce Thompson Institute for Plant Research, 533 Tower Road, Ithaca, NY, 14853-1801, USA
- National Institute for Laser, Plasma & Radiation Physics, Str. Atomistilor, Nr. 409, Magurele, 077125, Bucharest, Romania
| | - Sorina C Popescu
- Boyce Thompson Institute for Plant Research, 533 Tower Road, Ithaca, NY, 14853-1801, USA
| | - Katharina Goellner
- Department of Plant Physiology, RWTH Aachen University, Aachen, 52056, Germany
| | - Gerold J M Beckers
- Department of Plant Physiology, RWTH Aachen University, Aachen, 52056, Germany
| | - Uwe Conrath
- Department of Plant Physiology, RWTH Aachen University, Aachen, 52056, Germany
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50
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Pi E, Qu L, Hu J, Huang Y, Qiu L, Lu H, Jiang B, Liu C, Peng T, Zhao Y, Wang H, Tsai SN, Ngai S, Du L. Mechanisms of Soybean Roots' Tolerances to Salinity Revealed by Proteomic and Phosphoproteomic Comparisons Between Two Cultivars. Mol Cell Proteomics 2016; 15:266-88. [PMID: 26407991 PMCID: PMC4762511 DOI: 10.1074/mcp.m115.051961] [Citation(s) in RCA: 52] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2015] [Revised: 09/15/2015] [Indexed: 12/23/2022] Open
Abstract
Understanding molecular mechanisms underlying plant salinity tolerance provides valuable knowledgebase for effective crop improvement through genetic engineering. Current proteomic technologies, which support reliable and high-throughput analyses, have been broadly used for exploring sophisticated molecular networks in plants. In the current study, we compared phosphoproteomic and proteomic changes in roots of different soybean seedlings of a salt-tolerant cultivar (Wenfeng07) and a salt-sensitive cultivar (Union85140) induced by salt stress. The root samples of Wenfeng07 and Union85140 at three-trifoliate stage were collected at 0 h, 0.5 h, 1 h, 4 h, 12 h, 24 h, and 48 h after been treated with 150 mm NaCl. LC-MS/MS based phosphoproteomic analysis of these samples identified a total of 2692 phosphoproteins and 5509 phosphorylation sites. Of these, 2344 phosphoproteins containing 3744 phosphorylation sites were quantitatively analyzed. Our results showed that 1163 phosphorylation sites were differentially phosphorylated in the two compared cultivars. Among them, 10 MYB/MYB transcription factor like proteins were identified with fluctuating phosphorylation modifications at different time points, indicating that their crucial roles in regulating flavonol accumulation might be mediated by phosphorylated modifications. In addition, the protein expression profiles of these two cultivars were compared using LC MS/MS based shotgun proteomic analysis, and expression pattern of all the 89 differentially expressed proteins were independently confirmed by qRT-PCR. Interestingly, the enzymes involved in chalcone metabolic pathway exhibited positive correlations with salt tolerance. We confirmed the functional relevance of chalcone synthase, chalcone isomerase, and cytochrome P450 monooxygenase genes using soybean composites and Arabidopsis thaliana mutants, and found that their salt tolerance were positively regulated by chalcone synthase, but was negatively regulated by chalcone isomerase and cytochrome P450 monooxygenase. A novel salt tolerance pathway involving chalcone metabolism, mostly mediated by phosphorylated MYB transcription factors, was proposed based on our findings. (The mass spectrometry raw data are available via ProteomeXchange with identifier PXD002856).
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Affiliation(s)
- Erxu Pi
- From the ‡College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, Zhejiang, 310036, PR China;
| | - Liqun Qu
- From the ‡College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, Zhejiang, 310036, PR China
| | - Jianwen Hu
- §Shanghai Applied Protein Technology Co. Ltd, Shanghai, 200233, PR China
| | - Yingying Huang
- From the ‡College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, Zhejiang, 310036, PR China
| | - Lijuan Qiu
- ¶The National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, P.R. China
| | - Hongfei Lu
- ‖College of Life Science, Zhejiang Sci-Tech University, Hangzhou, 310018, PR China
| | - Bo Jiang
- **College of Biology and Food Engineering, Changshu Institute of Technology, Changshu 215500, PR China
| | - Cong Liu
- From the ‡College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, Zhejiang, 310036, PR China
| | - Tingting Peng
- From the ‡College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, Zhejiang, 310036, PR China
| | - Ying Zhao
- From the ‡College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, Zhejiang, 310036, PR China
| | - Huizhong Wang
- From the ‡College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, Zhejiang, 310036, PR China
| | - Sau-Na Tsai
- ‡‡Centre for Soybean Research of Partner State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Hong Kong
| | - Saiming Ngai
- ‡‡Centre for Soybean Research of Partner State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Hong Kong
| | - Liqun Du
- From the ‡College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, Zhejiang, 310036, PR China;
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