Soil and Crop Management Practices to Minimize the Impact of Waterlogging on Crop Productivity

Harnessing the power of genomics to develop climate-smart crop varieties: A comprehensive review

Abiotic stresses arising as consequences of climate change pose a serious threat to agricultural productivity on a global scale. Most cultivated crop varieties exhibit susceptibility to such environmental pressures as drought, salinity, and waterlogging. Addressing these abiotic stresses through agronomic means is not only financially burdensome but also often impractical, particularly in the case of abiotic stresses like heat stress. Cultivating resilient varieties that can withstand such pressures emerges as an economically feasible strategy to mitigate these challenges. Nevertheless, the development of stress-tolerant cultivars is hindered by the intricate nature of abiotic stress tolerance, often characterized by low heritability values. Compounding this complexity is the dynamic and multifaceted nature of these stresses, which impede conventional breeding efforts, rendering them painstakingly slow. The identification of molecular markers has emerged as a pivotal advancement in this arena. By pinpointing genomic regions associated with tolerance to abiotic stresses, these markers serve as effective tools for selection and trait introgression. In the post-genomic era, the proliferation of high-density SNP markers has revolutionized breeding strategies. Genomic selection, leveraging these markers, has become the method of choice for addressing polygenic traits with low heritability, such as abiotic stress tolerance. With the functional characterization of many genes being done, precise manipulation through genome editing techniques is gaining significant traction. This review delves into the application of molecular markers in breeding stress-tolerant crop varieties, alongside role of recent genomic techniques in enhancing abiotic stress tolerance. It also explores success stories and identifies potential targets for marker-assisted selection.

Exploring the link between soil health and crop productivity

Understanding the complex interactions of plants and soils in the face of global food security and environmental degradation challenges is critical to the future of sustainable agriculture. This review discusses the important link between soil health and crop productivity by providing and comprehensive assessment of soil properties and management methods. By examining the physical, chemical, and biological properties of soil, it uncovers the key limitations posed by the soil environment on crop growth. The review highlights how soil texture, nutrient availability, and moisture levels directly impact on root growth, water uptake, and nutrient use efficiencies, while also exploring how diverse cropping systems enhance soil ecology and biodiversity. By utilizing state-of-the-art bioinformatics, we offer an in-depth exploration of rhizosphere microbial communities, emphasizing the functions of phosphate-solubilizing and nitrogen-fixing bacteria in promoting vital nutrient cycles. The potential of using microbial fertilizers to increase crop resistance to disease and stress hold a major premise for future sustainability in agriculture. In this regard, this review highlights the long-term impacts of crop cultivation on soil microbial diversity, revealing intricate selection processes between crops and their microbial partners in shaping crop-soil-microbe interactions. In terms of soil management, practical nutrient management strategies are proposed based on soil testing, emphasizing the benefits of organic farming and conservation tillage for soil health. Modern precision agricultural tools and remote sensing technologies are encouraged to be refined for effective nutrient management. At the policy level, we evaluate international guidelines aimed at fostering agricultural sustainability, suggesting new research pathways for crop-soil dynamics and offering approaches for developing soil health indicators in the face of global environmental challenges.

Comparative Transcriptome Analyses Reveal the Mechanisms Underlying Waterlogging Tolerance in Barley

Waterlogging is becoming a global issue, affecting crop growth and yield in low-lying rainfed areas. A DH line, TamF169, showing superior waterlogging tolerance, and its waterlogging-sensitive parent, Franklin, were used to conduct transcriptome analyses. The results showed that 2209 and 2578 differentially expressed genes (DEGs) in Franklin and 1997 and 1709 DEGs in TamF169 were detected by comparing gene expression levels under control and waterlogging after 4 and 8 days, respectively, with 392 and 257 DEGs being specific to TamF169 after 4 and 8 days under waterlogging, respectively. KEGG analysis showed that glycolysis/gluconeogenesis, the MAPK signaling pathway, plant hormone signaling, and galactose metabolism pathways were significantly enriched in the waterlogging-tolerant genotype TamF169 four days after waterlogging. The qPCR results were consistent with the transcriptome data, suggesting the reliability of the transcriptome sequencing. A total of 13 genes in the mapping region of a QTL for root cortical aerenchyma (RCA) showed different expression levels in Franklin or TamF169, and the potential candidate genes for RCA-QTL are discussed. This study offers valuable information on the mechanism of tolerance to waterlogging stress in the DH line TamF169 and provides the candidate genes for RCA-QTL.

Geography, altitude, agriculture, and hypoxia

Reduced oxygen availability (hypoxia) represents a key plant abiotic stress in natural and agricultural systems, but conversely it is also an important component of normal growth and development. We review recent advances that demonstrate how genetic adaptations associated with hypoxia impact the known plant oxygen-sensing mechanism through the PLANT CYSTEINE OXIDASE N-degron pathway. Only 3 protein substrates of this pathway have been identified, and all adaptations identified to date are associated with the most important of these, the group VII ETHYLENE RESPONSE FACTOR transcription factors. We discuss how geography, altitude, and agriculture have all shaped molecular responses to hypoxia and how these responses have emerged at different taxonomic levels through the evolution of land plants. Understanding how ecological and agricultural genetic variation acts positively to enhance hypoxia tolerance will provide novel tools and concepts to improve the performance of crops in the face of increasing extreme flooding events.

Environmental genome-wide association studies across precipitation regimes reveal that the E3 ubiquitin ligase MBR1 regulates plant adaptation to rainy environments

In an era characterized by rapidly changing and less-predictable weather conditions fueled by the climate crisis, understanding the mechanisms underlying local adaptation in plants is of paramount importance for the conservation of species. As the frequency and intensity of extreme precipitation events increase, so are the flooding events resulting from soil water saturation. The subsequent onset of hypoxic stress is one of the leading causes of crop damage and yield loss. By combining genomics and remote sensing data, it is now possible to probe natural plant populations that have evolved in different rainfall regimes and look for molecular adaptation to hypoxia. Here, using an environmental genome-wide association study (eGWAS) of 934 non-redundant georeferenced Arabidopsis ecotypes, we have identified functional variants of the gene MED25 BINDING RING-H2 PROTEIN 1 (MBR1). This gene encodes a ubiquitin-protein ligase that regulates MEDIATOR25 (MED25), part of a multiprotein complex that interacts with transcription factors that act as key drivers of the hypoxic response in Arabidopsis, namely the RELATED TO AP2 proteins RAP2.2 and RAP2.12. Through experimental validation, we show that natural variants of MBR1 have different effects on the stability of MED25 and, in turn, on hypoxia tolerance. This study also highlights the pivotal role of the MBR1/MED25 module in establishing a comprehensive hypoxic response. Our findings show that molecular candidates for plant environmental adaptation can be effectively mined from large datasets. This thus supports the need for integration of forward and reverse genetics with robust molecular physiology validation of outcomes.

Long-term changes in soil biological activity and other properties of raised beds in Longan orchards

Introduction

The Longan fruit tree of the Vietnam Mekong Delta is grown in raised beds to improve water drainage during the rainy season and can live as long as 100 years.

Objective

This research explores the extent to which the soil microorganisms as well as soil physical and chemical properties of these raised beds degrade over a period of 60 years under traditional management practices.

Materials and Methods

Raised bed topsoil samples at depths of 0-20 cm were obtained from four different Longan orchards raised bed age groups: group 1) 15-25 years (L1-L5); group 2) 26-37 years (L6-L10); group 3) 38-45 years (L11-L15); and group 4) 46-60 years. Soil biological properties were tested for nitrogen-fixing bacteria, phosphorus solubilizing bacteria, potassium solubilizing bacteria, calcium solubilizing bacteria and silicate solubilizing bacteria, β-glucosidase, urease, phosphomonoesterase, and phytase. Soil samples were also tested for moisture content, soil texture, soil porosity, and bulk density as well as soil chemical properties including pH, electrical conductivity (EC), soil organic matter (SOM), total nitrogen (TN), total phosphorus (TP), total potassium (TK), available nitrogen (NH4 +, NO3 -), available phosphorus (AP), exchangeable potassium (K+), exchangeable calcium (Ca2 +), available silicate (SiO2), available copper (Cu), zinc (Zn), boron (B) and manganese (Mn). Key findings: The results showed that soil moisture, soil porosity, sand content, SOM, TP, TK, available P, exchangeable Ca2 +, available Si, nitrogen fixing bacteria number, β-glucosidase, urease, phosphomonoesterase, and phytase gradually and significantly decreased in the raised bed soil as the Longan orchard increased in age. Pearson correlation analysis between the ages of Longan orchards and soil properties revealed that raised bed ages were positively correlated with soil bulk density, but negatively correlated with soil moisture content, soil porosity, SOM, TN, β-glucosidase, urease, phosphomonoesterase, and phytase. Principal component analysis (PCA) showed Longan yields had a positive correlation with available NO3 - but negative correlation with NFB, exchangeable Ca2 +, pH, and available B. These findings reveal that traditional long-term management of Longan trees in raised beds significantly reduce soil organic matter, moisture content, porosity, and soil fertility with impacts on soil microbial numbers and activity within raised bed soils.

Future Directions

This suggests that more sustainable management practices, such as mulch and cover crops that decrease soil compaction and increase soil organic matter, improve soil porosity, total N, and feed soil microorganisms that are critical to nutrient cycling are needed to improve raised bed soil quality.

Typology of Tomato Cropping Systems and Determinants of Preharvest Losses in Western Cameroon

Preharvest losses, which are often neglected, limit the availability of fresh tomato fruit to varying degrees in tomato-based cropping systems in Cameroon. Increasing tomato yields requires identifying, understanding, and controlling the factors responsible for preharvest losses in the identified cropping systems. Field surveys were conducted in three production areas of western Cameroon (Foumbot, Bansoa, and Dschang) to characterize cropping systems and growers, quantify production losses, and identify causal factors associated with losses and proffer solutions. One hundred and ninety-six growers were interviewed in 13 villages, using purposive sampling to select zones and simple random sampling to select growers. Factor analysis for mixed data (FAMD) and canonical discriminant analysis, combined with multinomial logistic regression, were used to analyze the collected data. The FAMD results indicated that 72% of the farm variability was expressed through technical route, preharvest losses, and technical mastery. The tomato-based cropping systems were classified into three types: (1) a pure cultivation system that consumes excessive synthetic fertilizers and results in significant losses; (2) a pure cultivation system that consumes high amounts of synthetic fertilizers and moderate amounts of organic fertilizers with moderate losses; and (3) a cultivation system that involves moderate synthetic fertilizer consumption, extremely low organic amendment, and low losses. Preharvest losses can be significantly affected by the unregulated use of synthetic fertilizers. The study's implications are many, affecting agricultural practices, policy, economic stability, and food security in Cameroon. A more sustainable and productive tomato industry can be achieved by addressing preharvest losses through informed strategies. To address this issue, it is crucial to establish fertilization protocols that consider the soil's fertility status and the tomato's essential macro- and micronutrient requirements.

Exploring the insights of bioslurry-Nanoparticle amalgam for soil amelioration

In response to global agricultural challenges, this review examines the synergistic impact of bioslurry and biogenic nanoparticles on soil amelioration. Bioslurry, rich in N, P, K and beneficial microorganisms, combined with zinc oxide nanoparticles synthesized through eco-friendly methods, demonstrates remarkable soil improvement capabilities. Their synergistic effects include enhanced nutrient availability through increased soil enzymatic activities, improved soil structure via stable aggregate formation, stimulated microbial activity particularly beneficial groups, enhanced water retention due to increased organic matter and modified soil surface properties and reduced soil pH fluctuations. These mechanisms significantly impact soil physico-chemical properties including cation exchange capacity, electrical conductivity and nutrient dynamics. This review analyses these effects and their implications for sustainable agricultural practices, focusing on crop yield improvements, reduced chemical fertilizer dependence and enhanced plant stress tolerance. Knowledge gaps such as long-term nanoparticle accumulation effects and impacts on non-target organisms are identified. Future research directions include optimizing bioslurry-nanoparticle ratios for various soil types and developing "smart" nanoparticle-enabled biofertilizers with controlled release properties. This innovative approach contributes to environmentally friendly farming practices, potentially enhancing global food security and supporting sustainable agriculture transitions. The integration of bioslurry and biogenic nanoparticles presents a promising solution to soil degradation and agricultural sustainability challenges.

Impact of sowing date and level of phosphorus application on economic returns in cotton

This study explored the economic dynamics of cotton (Gossypium hirsutum L.) production in Msilale village, Chato District, Tanzania. The experiment utilized a factorial design with sowing dates on November 25th, December 15th, and January 4th, and phosphorus levels at 0, 20, 40, and 60 kg P ha-1, replicated three times. Results indicated significantly higher cotton yields (6.1 t ha-1 and 6.3 t ha-1) for November and December sowings compared to January (3.8 t ha-1). This is a 61% and 66% increase in cotton yields for November and December sowings, respectively relative to January sowing. Though not significant, 20 kg P ha-1 and 40 kg P ha-1 applications yielded 5.8 t ha-1 and 5.4 t ha-1, respectively, while 60 kg P ha-1 yielded 5.3 t ha-1. This is a 9.4% and 1.9% increase in cotton yields at 20 and 40 kg P ha-1, respectively relative to absolute control and 60 kg P ha-1 application. Economic analysis revealed that late sowing (January) had the lowest net profit (Tshs. 3,723,400 ≈ USD 1,486) and benefit-to-cost ratio (BCR) of 11.2. Early sowings recorded higher net profits (Tshs. 6,679,527 ≈ USD 2,666 and Tshs. 6,861,283 ≈ USD 2,738) and BCRs (18.4 and 18.8, respectively). This is a 79% (BCR = 64%) and 84% (BCR = 68) increase in net benefits from early sowings compared to late sowing. Applications of 20, 40, and 60 kg P ha-1 resulted in net benefits of Tshs. 5,452,572 ≈ USD 2,176 (BCR = 19.2), Tshs. 5,209,904 ≈ USD 2,079 (BCR = 15.1), and Tshs. 5,748,786 ≈ USD 2,294 (BCR = 14.1), respectively, with a significant (p = 0.017) BCR at 20 kg P ha-1 indicating cost-effectiveness. This is a 36% and 7.1% economic benefit at 20 and 40 kg P ha-1, respectively compared to 60 kg P ha-1 application. Optimizing sowing dates and P levels can boost economic returns in cotton production and promote sustainability.

RNA-seq-based comparative transcriptome analysis reveals the role of CsPrx73 in waterlogging-triggered adventitious root formation in cucumber

Abiotic stressors like waterlogging are detrimental to cucumber development and growth. However, comprehension of the highly complex molecular mechanism underlying waterlogging can provide an opportunity to enhance cucumber tolerance under waterlogging stress. We examined the hypocotyl and stage-specific transcriptomes of the waterlogging-tolerant YZ026A and the waterlogging-sensitive YZ106A, which had different adventitious rooting ability under waterlogging. YZ026A performed better under waterlogging stress by altering its antioxidative machinery and demonstrated a greater superoxide ion (O 2-) scavenging ability. KEGG pathway enrichment analysis showed that a high number of differentially expressed genes (DEGs) were enriched in phenylpropanoid biosynthesis. By pairwise comparison and weighted gene co-expression network analysis analysis, 2616 DEGs were obtained which were categorized into 11 gene co-expression modules. Amongst the 11 modules, black was identified as the common module and yielded a novel key regulatory gene, CsPrx73. Transgenic cucumber plants overexpressing CsPrx73 enhance adventitious root (AR) formation under waterlogging conditions and increase reactive oxygen species (ROS) scavenging. Silencing of CsPrx73 expression by virus-induced gene silencing adversely affects AR formation under the waterlogging condition. Our results also indicated that CsERF7-3, a waterlogging-responsive ERF transcription factor, can directly bind to the ATCTA-box motif in the CsPrx73 promoter to initiate its expression. Overexpression of CsERF7-3 enhanced CsPrx73 expression and AR formation. On the contrary, CsERF7-3-silenced plants decreased CsPrx73 expression and rooting ability. In conclusion , our study demonstrates a novel CsERF7-3-CsPrx73 module that allows cucumbers to adapt more efficiently to waterlogging stress by promoting AR production and ROS scavenging.

Looking for Resistance to Soft Rot Disease of Potatoes Facing Environmental Hypoxia

Plants are exposed to various stressors, including pathogens, requiring specific environmental conditions to provoke/induce plant disease. This phenomenon is called the "disease triangle" and is directly connected with a particular plant-pathogen interaction. Only a virulent pathogen interacting with a susceptible plant cultivar will lead to disease under specific environmental conditions. This may seem difficult to accomplish, but soft rot Pectobacteriaceae (SRPs) is a group virulent of pathogenic bacteria with a broad host range. Additionally, waterlogging (and, resulting from it, hypoxia), which is becoming a frequent problem in farming, is a favoring condition for this group of pathogens. Waterlogging by itself is an important source of abiotic stress for plants due to lowered gas exchange. Therefore, plants have evolved an ethylene-based system for hypoxia sensing. Plant response is coordinated by hormonal changes which induce metabolic and physiological adjustment to the environmental conditions. Wetland species such as rice (Oryza sativa L.), and bittersweet nightshade (Solanum dulcamara L.) have developed adaptations enabling them to withstand prolonged periods of decreased oxygen availability. On the other hand, potato (Solanum tuberosum L.), although able to sense and response to hypoxia, is sensitive to this environmental stress. This situation is exploited by SRPs which in response to hypoxia induce the production of virulence factors with the use of cyclic diguanylate (c-di-GMP). Potato tubers in turn reduce their defenses to preserve energy to prevent the negative effects of reactive oxygen species and acidification, making them prone to soft rot disease. To reduce the losses caused by the soft rot disease we need sensitive and reliable methods for the detection of the pathogens, to isolate infected plant material. However, due to the high prevalence of SRPs in the environment, we also need to create new potato varieties more resistant to the disease. To reach that goal, we can look to wild potatoes and other Solanum species for mechanisms of resistance to waterlogging. Potato resistance can also be aided by beneficial microorganisms which can induce the plant's natural defenses to bacterial infections but also waterlogging. However, most of the known plant-beneficial microorganisms suffer from hypoxia and can be outcompeted by plant pathogens. Therefore, it is important to look for microorganisms that can withstand hypoxia or alleviate its effects on the plant, e.g., by improving soil structure. Therefore, this review aims to present crucial elements of potato response to hypoxia and SRP infection and future outlooks for the prevention of soft rot disease considering the influence of environmental conditions.

Waterlogging faced by bulbil expansion improved the growth of Pinellia ternata and its effect reinforced by brassinolide

The bulbil expansion of P. ternata is a key period for its yield formation, and the process of bulbil expansion is often subjected to short-term heavy precipitation. It is not clear whether the short-term waterlogging can affect bulbil expansion. Brassinolide (BR) is widely believed to enhance plant tolerance to abiotic stress. The study investigated the effects of normal water (C), waterlogging (W), waterlogging + BR (W + B), waterlogging + propiconazole (W + P) on P. ternata at the bulbil expansion period in order to assess P. ternata's ability to cope with waterlogging during the bulbil expansion stage and the regulation effects of BR on the process. The biomass of P. ternata was significantly increased after waterlogging. W treatment significantly reduced the H2O2 and MDA contents, the rate of O2⋅- production and the activities of antioxidant enzymes compared with the C group. AsA and GSH contents were significantly reduced by W treatment. However, the ratios of AsA/DHA and GSH/GSSG were slightly affected by W treatment. The rate of O2∙- production and H2O2 content in W + B group were significantly lower than those in W group. The POD, APX, and GR activities, and GSH content in W + B group were evidently increased compared with the W group. Soluble sugar and active ingredients contents were significantly increased after waterlogging, and the enhancement was reinforced by BR. In conclusion, waterlogging reduced oxidative stress in P. ternata under the experimental conditions. BR treatment under waterlogging had a positive effect on P. ternata by enhancing antioxidant capacity and promoting the accumulation of soluble sugars and active ingredients.

Physiological, Epigenetic, and Transcriptome Analyses Provide Insights into the Responses of Wheat Seedling Leaves to Different Water Depths under Flooding Conditions

Flooding stress, including waterlogging and submergence, is one of the major abiotic stresses that seriously affects the growth and development of plants. In the present study, physiological, epigenetic, and transcriptomic analyses were performed in wheat seedling leaves under waterlogging (WL), half submergence (HS), and full submergence (FS) treatments. The results demonstrate that FS increased the leaves' hydrogen peroxide (H2O2) and malondialdehyde (MDA) contents and reduced their chlorophyll contents (SPAD), photosynthetic efficiency (Fv/Fm), and shoot dry weight more than HS and WL. In addition, FS increased catalase (CAT) and peroxidase (POD) activities more than HS and WL. However, there were no significant differences in the contents of H2O2, MDA, SPAD, and Fv/Fm, and the activities of superoxide dismutase (SOD) and POD between the HS and WL treatments. The changes in DNA methylation were related to stress types, increasing under the WL and HS treatments and decreasing under the FS treatment. Additionally, a total of 9996, 10,619, and 24,949 genes were differentially expressed under the WL, HS, and FS treatments, respectively, among which the 'photosynthesis', 'phenylpropanoid biosynthesis', and 'plant hormone signal transduction' pathways were extensively enriched under the three flooding treatments. The genes involved in these pathways showed flooding-type-specific expression. Moreover, flooding-type-specific responses were observed in the three conditions, including the enrichment of specific TFs and response pathways. These results will contribute to a better understanding of the molecular mechanisms underlying the responses of wheat seedling leaves to flooding stress and provide valuable genetic and epigenetic information for breeding flood-tolerant varieties of wheat.

Soil microbiome analysis reveals effects of periodic waterlogging stress on sugarcane growth

Sugarcane is one of the major agricultural crops with high economic importance in Thailand. Periodic waterlogging has a long-term negative effect on sugarcane development, soil properties, and microbial diversity, impacting overall sugarcane production. Yet, the microbial structure in periodically waterlogged sugarcane fields across soil compartments and growth stages in Thailand has not been documented. This study investigated soil and rhizosphere microbial communities in a periodic waterlogged field in comparison with a normal field in a sugarcane plantation in Ratchaburi, Thailand, using 16S rRNA and ITS amplicon sequencing. Alpha diversity analysis revealed comparable values in periodic waterlogged and normal fields across all growth stages, while beta diversity analysis highlighted distinct microbial community profiles in both fields throughout the growth stages. In the periodic waterlogged field, the relative abundance of Chloroflexi, Actinobacteria, and Basidiomycota increased, while Acidobacteria and Ascomycota decreased. Beneficial microbes such as Arthrobacter, Azoarcus, Bacillus, Paenibacillus, Pseudomonas, and Streptomyces thrived in the normal field, potentially serving as biomarkers for favorable soil conditions. Conversely, phytopathogens and growth-inhibiting bacteria were prevalent in the periodic waterlogged field, indicating unfavorable conditions. The co-occurrence network in rhizosphere of the normal field had the highest complexity, implying increased sharing of resources among microorganisms and enhanced soil biological fertility. Altogether, this study demonstrated that the periodic waterlogged field had a long-term negative effect on the soil microbial community which is a key determining factor of sugarcane growth.

Efficiency of nitrogen, gibberellic acid and potassium on canola production under sub-tropical regions of Pakistan

The global demand for crop production is rapidly growing due to the continued rise in world population. Crop productivity varies generally with soil nutrient profile and climate. The optimal use of fertilizers might help to attain higher crop yield in canola. To circumvent nutrient imbalance issues in soil, two separate field trials were conducted to determine (a) the best source of nitrogen (N) between ammonium sulfate (NH4)2SO4) and ammonium nitrate (NH4NO3), (b) significance of gibberellic acid (GA3) and potassium (K), in an attempt to enhance canola yield and yield attributes. Both experiments were carried out in randomized complete block design (RCBD) with three replicates. The nitrogen source in the form of NH4)2SO4 (0, 10, 20 and 30 kg/ha) and NH4NO3 (0, 50, 75 and 100 kg/ha) was applied in the rhizosphere after 3 and 7 weeks of sowing, referred to as experiment 1 (E1). In another separate experiment (E2), the canola crop was sprayed with four level of GA3 (0, 10, 15, 30 g/ha) and K (0, 2.5, 3.5, 6 g/ha) individually or in combination by using hydraulic spryer, 30 days after sowing (DAS). The data was collected at different growth stages of canola and analyzed statistically. The E1 trail showed that N fortification in the form of NH4NO3 (100 kg/ha) and (NH4)2SO4 (30 kg/ha) had a positive effect on the plant height, number of branches, fruiting zone, seed yield per plant, seed yield per hectare of canola except oil percentage. Moreover, canola plants (E2) also displayed a significant improvement on all studied features with high doses of GA3 (30 g/ha) and K (6 g/ha) individualy and in combined form. The correlation coefficient analysis of (NH4)2SO4 and NH4NO3 was highly significant to plant height, number of branches, fruiting zone, seed yield per plant, seed yield per hectare of canola In a nutshell, compared to both source of N, NH4NO3 was more efficient and readily available source of N. GA3 being a growth elicitor and potassium as a micronutrient serve as potential source to improve yield and to manage nutrient profile of canola.

Effects of the age of raised beds on the physicochemical characteristics of fruit orchard soil in the Vietnamese Mekong Delta

To grow fruit plants, farmers in the Vietnamese Mekong Delta (VMD) must use raised bed constructions to avoid waterlogging during the rainy season. This study aimed to evaluate the effects of the age of the raised beds on the soil physicochemical properties of longan orchards located in the VMD. Two raised bed systems were evaluated: a young bed constructed 10 years ago and an old bed constructed 42 years ago. Soil samples were collected from five different soil layers (0-20, 20-40, 40-60, 60-80, and 80-100 cm) with four replicates per layer. Soil samples were tested for pH, electrical conductivity (EC), available phosphorus (AP), total nitrogen (TN), soil organic matter (SOM), exchangeable cations (Ca2+, K+, Mg2+, and Na+), cation exchange capacity (CEC), bulk density (BD), soil porosity, available water-holding capacity (AWC), particle composition (sand, silt, and clay), and size. The soil pH was approximately 1.0 units lower in the old bed compared to the young bed at depths of 0-20 and 20-40 cm. The BD was higher in the old bed (0.15 g cm-3) than in the young bed at a soil depth of 0.4 m. SOM, AP, exchangeable cations (Ca2+, Na+, and Mg2+), AWC, and soil porosity were significantly lower in both the topsoil (0-20 cm) and subsoil (20-40 cm) layers in the old bed than in the young bed. In particular, the SOM, AP, AWC, and soil porosity contents in the old bed decreased by 18%, 20%, 15%, and 17%, respectively, compared with those in the young bed at soil depths of 0-40 cm. Therefore, cultivating raised bed soil for a longer period significantly reduced the soil exchangeable cations, porosity, and fertility of the surface and subsurface soils. Based on these results, farmers should use soil conservation practices, such as cover crops, rice straw mulching, and soil amendments in their orchards to mitigate topsoil degradation.

Nutrient management: as a panacea to improve the caryopsis quality and yield potential of durum wheat (Triticum turgidum L.) under the changing climatic conditions

The increasing human population and the changing climate, which have given rise to frequent drought spells, pose a serious threat to global food security, while identification of high-yielding drought-tolerant genotypes coupled with nutrient management remains a proficient approach to cope with these challenges. An increase in seasonal temperature, recurring drought stress, and elevated atmospheric CO2 are alarmingly affecting durum wheat production, productivity, grain quality, and the human systems it supports. An increase in atmospheric carbon dioxide can improve wheat grain yield in a certain amount, but the right amount of nutrients, water, and other required conditions should be met to realize this benefit. Nutrients including nitrogen, silicon, and sulfur supply could alleviate the adverse effects of abiotic stress by enhancing antioxidant defense and improving nitrogen assimilation, although the effects on plant tolerance to drought stress varied with nitrogen ionic forms. The application of sewage sludge to durum wheat also positively impacts its drought stress tolerance by triggering high accumulation of osmoregulators, improving water retention capacity in the soil, and promoting root growth. These beneficial effect of nutrients contribute to durum wheat ability to withstand and recover from abiotic stress conditions, ultimately enhance its productivity and resilience. While these nutrients can provide benefits when applied in appropriate amounts, their excessive use can lead to adverse environmental consequences. Advanced technologies such as precision nutrient management, unmanned aerial vehicle-based spraying, and anaerobic digestion play significant roles in reducing the negative effects associated with nutrients like sewage sludge, zinc, nanoparticles and silicon fertilizers. Hence, nutrient management practices offer significant potential to enhance the caryopsis quality and yield potential of durum wheat. Through implementing tailored nutrient management strategies, farmers, breeders, and agronomists can contribute to sustainable durum wheat production, ensuring food security and maintaining the economic viability of the crop under the changing climatic conditions.

Plant transcriptional memory and associated mechanism of abiotic stress tolerance

Plants face various adverse environmental conditions, particularly with the ongoing changes in global climate, which drastically affect the growth, development and productivity of crops. To cope with these stresses, plants have evolved complex mechanisms, and one of the crucial ways is to develop transcriptional memories from stress exposure. This induced learning enables plants to better and more strongly restart the response and adaptation mechanism to stress when similar or dissimilar stresses reoccur. Understanding the molecular mechanism behind plant transcriptional memory of stress can provide a theoretical basis for breeding stress-tolerant crops with resilience to future climates. Here we review the recent research progress on the transcriptional memory of plants under various stresses and the applications of underlying mechanisms for sustainable agricultural production. We propose that a thorough understanding of plant transcriptional memory is crucial for both agronomic management and resistant breeding, and thus may help to improve agricultural yield and quality under changing climatic conditions.

Genetic resources and precise gene editing for targeted improvement of barley abiotic stress tolerance

Abiotic stresses, predominately drought, heat, salinity, cold, and waterlogging, adversely affect cereal crops. They limit barley production worldwide and cause huge economic losses. In barley, functional genes under various stresses have been identified over the years and genetic improvement to stress tolerance has taken a new turn with the introduction of modern gene-editing platforms. In particular, clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9) is a robust and versatile tool for precise mutation creation and trait improvement. In this review, we highlight the stress-affected regions and the corresponding economic losses among the main barley producers. We collate about 150 key genes associated with stress tolerance and combine them into a single physical map for potential breeding practices. We also overview the applications of precise base editing, prime editing, and multiplexing technologies for targeted trait modification, and discuss current challenges including high-throughput mutant genotyping and genotype dependency in genetic transformation to promote commercial breeding. The listed genes counteract key stresses such as drought, salinity, and nutrient deficiency, and the potential application of the respective gene-editing technologies will provide insight into barley improvement for climate resilience.

Waterlogging stress alters the structure of sugar beet rhizosphere microbial community structure and recruiting potentially beneficial bacterial

Waterlogging has been shown to have a significant inhibitory effect on plant growth. However, the response mechanisms of the soil environment of sugar beet seedlings under waterlogging conditions still need to be fully understood. This study aimed to investigate the effects of waterlogging treatments on the content of effective nutrients and the microbial communities in the rhizosphere and non-rhizosphere using high-throughput sequencing. We set up waterlogging and non-waterlogging treatments, sampled sugar beet seedlings after 10 days of waterlogging, determined the effective soil nutrients in the rhizosphere and non-rhizosphere of the plants, and analyzed the differences in microbial diversity at ten days of waterlogging. The results showed that waterlogging significantly affected available potassium (AK) content. The Ak content of waterlogged soil was significantly higher than that of non-waterlogged soil. Waterlogging caused no significant difference in available nitrogen (AN) content and pH. Moreover, the plant growth-promoting bacteria Pseudomonas was significantly enriched in sugar beet waterlogged rhizospheres compared with the non-waterlogged ones. Similarly, the harmful fungi Gibellulopsis and Alternaria were enriched in sugar beet non-waterlogged rhizosphere. The network analysis revealed that waterlogging built a less complex root-microbial network than non-waterlogging. These findings implied that sugar beets subjected to waterlogging stress were enriched with beneficial microorganisms in the rhizosphere, potentially alleviating the stress.

Evaluation of typical ecosystem services in Dabie Mountain area and its application in improving residents' well-being

Research on ecosystem services and residents' well-being in old revolutionary base areas is an important task for China's ecological civilization construction and rural revitalization. Taking Jinzhai County, the core area of Dabie Mountains, China, as an example, based on InVEST model, the methods of spatial autocorrelation and coupling coordinated development degree, the spatiotemporal evolution, spatial heterogeneity and coupling association patterns of ecosystem services and multidimensional well-being in the study area from 2005 to 2020 were discussed. The major results are: In the past 15 years, in the core area of the Dabie Mountains, ecosystem services such as food supply, soil retention and water yield showed an upward trend, carbon sequestration and biodiversity maintenance showed a downward trend. The comprehensive index of multidimensional well-being in the core area of Dabie Mountain increased by 27.23% and the spatial difference in multidimensional well-being is gradually narrowing. By the analysis of coupling coordination, the number of units with the type of coupling disharmony between ecosystem services and multidimensional well-being in the study area decreased significantly from 56.85% in 2005 to 26.81% in 2020, respectively. The analysis of geographical detection showed that the habitat quality factor was the dominant controlling factor of coupling coordination spatial difference. By bivariate spatial autocorrelation analysis, in the past 15 years, the number of units with the "high ecology-high well-being" synergy type increased from 5.44% to 13.31%. The results can provide a reference for accurate identification, optimal regulation and synergistic improvement between ecosystem services and relative poverty in the Dabie Mountain area.

Growth performance of different forestry species irrigated with moderately saline wastewater

A seven month, pot study was conducted to evaluate the impact of moderately saline wastewater on the growth potential of six forestry plant species viz., Eucalyptus calmaldulensis, Dendrocalamus strictus, Casurina equisetfolia, Cassia fistula, Melia dubia, and Bambusa arundinacea under different drainage conditions namely, well-drained saline (WDS) condition and poor-drained saline condition (PDS) and the control with well-drained non-saline condition. WDS treatment resulted in no mortality whereas PDS treatment resulted in mortality in the range of 33-66%. The plant height and root dry biomass increased in the range of 145% to 221.6% and 4.3-37.1 g respectively in WDS treatment, however, 23.60% to 173.4% and 4.1-10.1 g in PDS treatment. Among all, Eucalyptus camaldulensis and Dendrocalamus strictus showed high Na+ accumulation in roots (2.16 ± 0.02% and 1.13 ± 0.01%), shoots (1.98 ± 0.01% and 0.74 ± 0.01%) and leaves (1.27 ± 0.02% and 0.86 ± 0.01%) in WDS treatment and in case of PDS treatment root (1.01 ± 0.01% and 0.23 ± 0.01%), shoot (1.12 ± 0.02% and 0.11 ± 0.01%), and leaf (0.07 ± 0.01% and 0.1 ± 0.02). The overall performance of both Eucalyptus camaldulensis and Dendrocalamus strictus was highest in WDS treatment. Therefore, it was concluded, that both plants had better performance than other plant species, a proper drainage system defines the overall productivity and treatment efficiency.

Instigating prevalent abiotic stress resilience in crop by exogenous application of phytohormones and nutrient

In recent times, the demand for food and feed for the ever-increasing population has achieved unparalleled importance, which cannot afford crop yield loss. Now-a-days, the unpleasant situation of abiotic stress triggers crop improvement by affecting the different metabolic pathways of yield and quality advances worldwide. Abiotic stress like drought, salinity, cold, heat, flood, etc. in plants diverts the energy required for growth to prevent the plant from shock and maintain regular homeostasis. Hence, the plant yield is drastically reduced as the energy is utilized for overcoming the stress in plants. The application of phytohormones like the classical auxins, cytokinins, ethylene, and gibberellins, as well as more recent members including brassinosteroids, jasmonic acids, etc., along with both macro and micronutrients, have enhanced significant attention in creating key benefits such as reduction of ionic toxicity, improving oxidative stress, maintaining water-related balance, and gaseous exchange modification during abiotic stress conditions. Majority of phytohormones maintain homeostasis inside the cell by detoxifying the ROS and enhancing the antioxidant enzyme activities which can enhance tolerance in plants. At the molecular level, phytohormones activate stress signaling pathways or genes regulated by abscisic acid (ABA), salicylic acid (SA), Jasmonic acid (JA), and ethylene. The various stresses primarily cause nutrient deficiency and reduce the nutrient uptake of plants. The application of plant nutrients like N, K, Ca, and Mg are also involved in ROS scavenging activities through elevating antioxidants properties and finally decreasing cell membrane leakage and increasing the photosynthetic ability by resynthesizing the chlorophyll pigment. This present review highlighted the alteration of metabolic activities caused by abiotic stress in various crops, the changes of vital functions through the application of exogenous phytohormones and nutrition, as well as their interaction.

Effects of different drainage conditions on nitrogen losses of an agricultural sandy loam soil

Prolonged waterlogging in agricultural fields has severe consequences for the crop development and growth, and could potentially lead to higher N losses. In this study, a 3.93 ha agricultural field in Denmark was separated into two parts of well-drained (WD) and poorly-drained (PD) based on the installation depth of the tile drains. The field was continuously monitored for drainage, soil water dynamics, nitrogen leaching through the drains, and grain dry matter and nitrogen yields in a 4-year period (2017-2020). Furthermore, denitrification potential of the top 1 m of the soil at both parts of the field was measured through the denitrifying enzyme activity assay, and a 1D Daisy model was utilized to capture the differences between water and nitrogen balances at WD and PD. Results indicated that on average over the 4 years, annual harvested nitrogen in the crops at PD was 14% lower compared to WD, with a significant reduction of 33% in 2017-2018, that coincided with the longest period of waterlogging at PD. Moreover, greater losses of nitrogen through leaching from drainage and other pathways were measured at the PD (109 kg N ha^-1 ya^-1) compared to the WD (95 kg N ha^-1 ya^-1). Based on the simulations, losses through preferential flow pathways to the drains dominated at PD and most of the denitrification is expected to occur within the topsoil. Future studies could significantly benefit from monitoring the redox dynamics in the top 30 cm of the PD soils, and increasing the depth of tiles drains by redrainage could reduce the N losses of poorly drained agricultural soils.

Wheat Crop under Waterlogging: Potential Soil and Plant Effects

Inundation, excessive precipitation, or inadequate field drainage can cause waterlogging of cultivated land. It is anticipated that climate change will increase the frequency, intensity, and unpredictability of flooding events. This stress affects 10-15 million hectares of wheat every year, resulting in 20-50% yield losses. Since this crop greatly sustains a population's food demands, providing ca. 20% of the world's energy and protein diets requirements, it is crucial to understand changes in soil and plant physiology under excess water conditions. Variations in redox potential, pH, nutrient availability, and electrical conductivity of waterlogged soil will be addressed, as well as their impacts in major plant responses, such as root system and plant development. Waterlogging effects at the leaf level will also be addressed, with a particular focus on gas exchanges, photosynthetic pigments, soluble sugars, membrane integrity, lipids, and oxidative stress.

Dry matter production, nitrogen yield and estimation of nitrogen fixation of legumes on vertisols of the Ethiopian highlands

Traditional land management techniques on vertisols frequently lead to soil fertility loss and land degradation. The objective of this study was to evaluate the impact of improved land preparation methods on the dry biomass and nitrogen (N) content of two legume species grown under two phosphorus fertilizer applications. The experimental design employed for these experiments was a randomized complete block design, with six treatments and four replications. Land preparation methods and phosphorus application significantly (P < 0.05) increased biomass production and N content in legumes. Over years and land preparation methods, vetch N accumulation was superior (P < 0.05) to clover and teff (Eragrostis teff). Such a large amount of N accumulation may have a positive contribution to subsequent crops when incorporated into the soil. Land preparation methods and years influenced soil mineral N accumulation, particularly under legumes. The N balance values indicated that it differed among species, land preparation methods, and P treatments over the year. The N balance of vetch +P ranged from 67.1 to 185.9 kg N ha^-1 over years and land preparation methods, whereas the comparable figure for vetch-P was 40.3-141.9 kg N ha^-1. Similarly, the N balance in clover-P ranged from 13.0 to 67.2 kg N ha^-1, and in clover +P from 13.8 to 98.6 kg N ha^-1. Teff's N balance has never exceeded 35 kg ha^-1 over the years.

Genome-wide association study reveals quantitative trait loci for waterlogging-triggered adventitious roots and aerenchyma formation in common wheat

Waterlogging severely affects wheat growth and development. Limited availability of oxygen in the root zone negatively affects the metabolism of plants. The formation of adventitious roots (ARs) and root cortical aerenchyma (RCA) are the most important adaptive trait contributing to plants' ability to survive in waterlogged soil conditions. This study used a genome-wide association study (GWAS) approach with 90K single nucleotide polymorphisms (SNPs) in a panel of 329 wheat genotypes, to reveal quantitative trait loci (QTL) conferring ARs and RCA. The wheat genotypes exposed to waterlogging were evaluated for ARs and RCA in both field and glasshouse over two consecutive years. Six and five significant marker-trait associations (MTAs) were identified for ARs and RCA formation under waterlogging, respectively. The most significant MTA for AR and RCA was found on chromosome 4B. Two wheat cultivars with contrasting waterlogging tolerance (tolerant: H-242, sensitive: H-195) were chosen to compare the development and regulation of aerenchyma in waterlogged conditions using staining methods. Results showed that under waterlogging conditions, H₂O₂ signal generated before aerenchyma formation in both sensitive and tolerant varieties with the tolerant variety accumulating more H₂O₂ and in a quicker manner compared to the sensitive one. Several genotypes which performed consistently well under different conditions can be used in breeding programs to develop waterlogging-tolerant wheat varieties.

Does land use change, waterlogging, and salinity impact on sustainability of agriculture and food security? Evidence from southwestern coastal region of Bangladesh

The United Nation's sustainable development goal is to achieve zero hunger by 2030 and achieve food security throughout the world. In this context, we analyze the anthropogenic factors such as land use and land cover change, waterlogging, and soil salinity which combinedly affecting the agricultural sustainability and threatening the food security in the southwestern region of Bangladesh. Landsat satellite images from 1991 to 2021 were used to detect the changes and identify how anthropogenic activities have altered the land cover and land use and impede the sustainability of agriculture. Terra MODIS vegetation indices from 2000 to 2020 were used to detect waterlogging. Soil salinity was measured from the soil samples and vegetation soil salinity index (VSSI) from Landsat images. Findings of the study revealed that agricultural lands have decreased because of an increase in shrimp farming. Waterlogging and soil salinity are increasing due to increased shrimp farms also for poor drainage infrastructure and human modification. The area of agricultural land in 2011 was 19,657.12 acres,12,750.14 acres, and 38,774.70 acres in Keshabpur, Abhaynagar, and Manirampur, which changed to 12,668.70 acres (-36%), 7151.27 acres (-44%), and 32,809.30 acres (-16%) in 2021. Our hotspot analysis reveals that very high vulnerability to waterlogging due to floods was highest in Manirampur (15,464.09 acres). Finally, we proposed a new framework called IDCEM designed for monitoring land-use change, salinity, and waterlogging in the interior coast, which will indirectly help to promote food security and help in achieving sustainable development goal.

Dominant and Priming Role of Waterlogging in Tomato at e[CO2] by Multivariate Analysis

The frequency of waterlogging episodes has increased due to unpredictable and intense rainfalls. However, less is known about waterlogging memory and its interaction with other climate change events, such as elevated CO₂ concentration (e[CO₂]). This study investigated the combined effects of e[CO₂] and two rounds of waterlogging stress on the growth of cultivated tomato (Solanum lycopersicum) and wild tomato (S. pimpinellifolium). The aim is to elucidate the interaction between genotypes and environmental factors and thereby to improve crop resilience to climate change. We found that two rounds of treatments appeared to induce different acclimation strategies of the two tomato genotypes. S. pimpinellifolium responded more negatively to the first-time waterlogging than S. lycopersicum, as indicated by decreased photosynthesis and biomass loss. Nevertheless, the two genotypes respond similarly when waterlogging stress recurred, showing that they could maintain a higher leaf photosynthesis compared to single stress, especially for the wild genotype. This showed that waterlogging priming played a positive role in stress memory in both tomato genotypes. Multivariate analysis showed that waterlogging played a dominant role when combined with [CO₂] for both the cultivated and wild tomato genotypes. This work will benefit agricultural production strategies by pinpointing the positive effects of e[CO₂] and waterlogging memory.

Dolit S, K. Khamis A, Abd-Aziz N, R. Azman N, A. Asli U. Regenerating Soil Microbiome: Balancing Microbial CO2 Sequestration and Emission

Soil microbiome plays a significant role in soil’s ecosystem for soils to be physically and biologically healthy. Soil health is fundamental for plant growth and crops productivity. In the introduction part, the roles and dynamics of the microbial community in soils, primarily in the cycle of soil organic carbon and CO2 release and absorption, are deliberated. Next, the impact of crop management practices and climate change on the soil carbon balance are described, as well as other issues related to soil degradation, such as unbalanced nutrient recycling and mineral weathering. In response to these issues, various approaches to soil regeneration have been developed in order to foster an efficient and active soil microbiome, thereby balancing the CO2 cycle and carbon sequestration in the soil ecosystem.

Phenotypic variation from waterlogging in multiple perennial ryegrass varieties under climate change conditions

Identifying how various components of climate change will influence ecosystems and vegetation subsistence will be fundamental to mitigate negative effects. Climate change-induced waterlogging is understudied in comparison to temperature and CO2. Grasslands are especially vulnerable through the connection with global food security, with perennial ryegrass dominating many flood-prone pasturelands in North-western Europe. We investigated the effect of long-term waterlogging on phenotypic responses of perennial ryegrass using four common varieties (one diploid and three tetraploid) grown in atmospherically controlled growth chambers during two months of peak growth. The climate treatments compare ambient climatological conditions in North-western Europe to the RCP8.5 climate change scenario in 2050 (+2°C and 550 ppm CO2). At the end of each month multiple phenotypic plant measurements were made, the plants were harvested and then allowed to grow back. Using image analysis and principal component analysis (PCA) methodologies, we assessed how multiple predictors (phenotypic, environmental, genotypic, and temporal) influenced overall plant performance, productivity and phenotypic responses. Long-term waterlogging was found to reduce leaf-color intensity, with younger plants having purple hues indicative of anthocyanins. Plant performance and yield was lower in waterlogged plants, with tetraploid varieties coping better than the diploid one. The climate change treatment was found to reduce color intensities further. Flooding was found to reduce plant productivity via reductions in color pigments and root proliferation. These effects will have negative consequences for global food security brought on by increased frequency of extreme weather events and flooding. Our imaging analysis approach to estimate effects of waterlogging can be incorporated into plant health diagnostics tools via remote sensing and drone-technology.

Modelling Waterlogging Impacts on Crop Growth: A Review of Aeration Stress Definition in Crop Models and Sensitivity Analysis of APSIM

Currently, crop physiological responses to waterlogging are considered only in a few crop models and in a limited way. Here, we examine the process bases of seven contemporary models developed to model crop growth in waterlogged conditions. The representation of plant recovery in these models is over-simplified, while plant adaptation or phenotypic plasticity due to waterlogging is often not considered. Aeration stress conceptualisation varies from the use of simple multipliers in equations describing transpiration and biomass to complex linkages of aeration-deficit factors with root growth, transpiration and nitrogen fixation. We recommend further studies investigating more holistic impacts and multiple stresses caused by plant behaviours driven by soils and climate. A sensitivity analysis using one model (a developer version of APSIM) with default parameters showed that waterlogging has the greatest impact on photosynthesis, followed by phenology and leaf expansion, suggesting a need for improved equations linking waterlogging to carbon assimilation. Future studies should compare the ability of multiple models to simulate real and in situ effects of waterlogging stress on crop growth using consistent experimental data for initialisation, calibration and validation. We conclude that future experimental and modelling studies must focus on improving the extent to which soil porosity, texture, organic carbon and nitrogen and plant-available water affect waterlogging stress, physiological plasticity and the ensuing temporal impacts on phenology, growth and yield.

Growth, Yield and Photosynthetic Performance of Winter Wheat as Affected by Co-Application of Nitrogen Fertilizer and Organic Manures

The application of organic manures was found to be beneficial, however, the integrated use of organic manures with chemical nitrogen fertilizers has proven more sustainable in increasing the photosynthetic attributes and grain yield of the winter-wheat crop. A multi-factor split-plot design was adopted, nitrogen and manure fertilizer treatments were set in the sub-plots, including nitrogen-gradient treatment of T1:0 kg N ha⁻¹, T2:100 kg N ha⁻¹, T3:200 kg N ha⁻¹, and T4:300 kg N ha⁻¹ (pure nitrogen -fertilizer application) The 25% reduction in nitrogen combined with the manure-fertilizer application includes T5:75 kg N ha⁻¹ nitrogen and 25 kg N ha⁻¹ manure, T6:150 kg N ha⁻¹ nitrogen and 50 kg N ha⁻¹ manure, and T7:225 kg N ha⁻¹ nitrogen and 75 kg N ha⁻¹ manure. The maximum results of the total chlorophyll content and photosynthetic rate were 5.73 mg/g FW and 68.13 m mol m⁻² s⁻¹, observed under T4 in Zhongmai 175, as compared to Jindong 22 at the heading stage. However, the maximum results of intercellular CO₂ concentration were 1998.47 μmol mol⁻¹, observed under T3 in Jindong 22, as compared to Zhongmai 175 at the tillering stage. The maximum results of LAI were 5.35 (cm²), observed under T7 in Jindong 22, as compared to Zhongmai 175 at the booting stage. However, the maximum results of Tr and Gs were 6.31 mmol H₂O m⁻² s⁻¹ and 0.90 H₂O mol m⁻² s⁻¹, respectively, observed under T7 in Zhongmai 175 as compared to Jindong 22 at the flowering stage. The results revealed that grain yield 8696.93 kg ha⁻¹, grains spike⁻¹ 51.33 (g), and 1000-grain weight 39.27 (g) were significantly higher, under T3 in Zhongmai 175, as compared to Jindong 22. Moreover, the spike number plot⁻¹ of 656.67 m² was significantly higher in Jindong 22, as compared to Zhongmai 175. It was concluded from the study that the combined application of nitrogen and manure fertilizers in winter wheat is significant for enhancing seed at the jointing and flowering stages. For increased grain yield and higher economic return, Zhongmai 175 outperformed the other cultivars examined. This research brings awareness toward the nitrogen-fertilizer-management approach established for farmers’ practice, which might be observed as an instruction to increase agricultural management for the winter-wheat-growth season.

Genome-Wide Association Study Reveals Marker Trait Associations (MTA) for Waterlogging-Triggered Adventitious Roots and Aerenchyma Formation in Barley

Waterlogging is an environmental stress, which severely affects barley growth and development. Limited availability of oxygen in the root zone negatively affects the metabolism of the whole plant. Adventitious roots (AR) and root cortical aerenchyma (RCA) formation are the most important adaptive traits that contribute to a plant's ability to survive in waterlogged soil conditions. This study used a genome-wide association (GWAS) approach using 18,132 single nucleotide polymorphisms (SNPs) in a panel of 697 barley genotypes to reveal marker trait associations (MTA) conferring the above adaptive traits. Experiments were conducted over two consecutive years in tanks filled with soil and then validated in field experiments. GWAS analysis was conducted using general linear models (GLM), mixed linear models (MLM), and fixed and random model circulating probability unification models (FarmCPU model), with the FarmCPU showing to be the best suited model. Six and five significant (approximately -log₁₀ (p) ≥ 5.5) MTA were identified for AR and RCA formation under waterlogged conditions, respectively. The highest -log₁₀ (p) MTA for adventitious root and aerenchyma formation were approximately 9 and 8 on chromosome 2H and 4H, respectively. The combination of different MTA showed to be more effective in forming RCA and producing more AR under waterlogging stress. Genes from major facilitator superfamily (MFS) transporter and leucine-rich repeat (LRR) families for AR formation, and ethylene responsive factor (ERF) family genes and potassium transporter family genes for RCA formation were the potential candidate genes involved under waterlogging conditions. Several genotypes, which performed consistently well under different conditions, can be used in breeding programs to develop waterlogging-tolerant varieties.

Sorghum (Sorghum bicolor L.) yield response to rainwater harvesting practices in the semi-arid farming environments of Zimbabwe: A meta-analysis

Rainwater harvesting practices are increasingly gaining recognition as viable adaptation strategies to overcome rainfall variability caused by climate change in semi-arid regions of Zimbabwe. A meta-analysis was conducted to provide a comprehensive quantitative synthesis of biophysical conditions (rainfall, soil texture, N fertility, mulch) under which basins, rippers, and tied ridges affected sorghum yields in semi-arid areas of Zimbabwe. Rainfall amount (<600 mm, 600-1000 mm), soil texture (20 % clay, 20-35 % clay), mulch (basin + mulch, ripper + mulch, tied ridges + mulch), and fertility (0-30 kg N/ha, 30-100 kg N/ha) were used to evaluate the response of sorghum grain yield to rainwater harvesting practices. Grain yield response was compared to the control (conventional practice) using the weighted mean yield difference approach. The results showed comparable sorghum grain yields in all the rainwater harvesting practices across the biophysical conditions, except under rainfall and soil textural classes. Tied ridges had a significant (p < 0.05) negative sorghum grain yield response (-0.25 t/ha) under <600 mm of rainfall, while ripper planting resulted in a substantial negative grain yield response (-0.32 t/ha) under 600-1000 mm of rainfall. Ripper planting reduced grain yield significantly (p < 0.05) (-1.06 t/ha) in soils with 20-35% clay. The results suggest that basins, rippers, and tied ridges did not improve sorghum grain yield across all agronomic conditions.

iTRAQ Proteomic Analysis of Wheat (Triticum aestivum L.) Genotypes Differing in Waterlogging Tolerance

Transient and chronic waterlogging constrains crop production in many regions of the world. Here, we invoke a novel iTRAQ-based proteomic strategy to elicit protein synthesis and regulation responses to waterlogging in tolerant (XM 55) and sensitive genotypes (YM 158). Of the 7,710 proteins identified, 16 were distinct between the two genotypes under waterlogging, partially defining a proteomic basis for waterlogging tolerance (and sensitivity). We found that 11 proteins were up-regulated and 5 proteins were down-regulated; the former included an Fe-S cluster assembly factor, heat shock cognate 70, GTP-binding protein SAR1A-like and CBS domain-containing protein. Down-regulated proteins contained photosystem II reaction center protein H, carotenoid 9, 10 (9', 10')-cleavage dioxygenase-like, psbP-like protein 1 and mitochondrial ATPase inhibitor. We showed that nine proteins responded to waterlogging with non-cultivar specificity: these included 3-isopropylmalate dehydratase large subunit, solanesyl-diphosphate synthase 2, DEAD-box ATP-dependent RNA helicase 3, and 3 predicted or uncharacterized proteins. Sixteen of the 28 selected proteins showed consistent expression patterns between mRNA and protein levels. We conclude that waterlogging stress may redirect protein synthesis, reduce chlorophyll synthesis and enzyme abundance involved in photorespiration, thus influencing synthesis of other metabolic enzymes. Collectively, these factors accelerate the accumulation of harmful metabolites in leaves in waterlogging-susceptible genotypes. The differentially expressed proteins enumerated here could be used as biological markers for enhancing waterlogging tolerance as part of future crop breeding programs.

Optimized Main Ditch Water Control for Agriculture in Northern Huaihe River Plain, Anhui Province, China, Using MODFLOW Groundwater Table Simulations

Controlled drainage by regulating the groundwater level in open ditches is necessary to ensure the normal growth of crops in Northern Huaihe River Plain, China. The groundwater model MODFLOW was calibrated and validated in a representative area, and was then conducted to simulate the groundwater under different main drainage ditch water depth control schemes during the growth period of corn and wheat. Then the scenario with highest water depth (Scenario 20) from 1989 to 2019 was simulated, and the annual cumulative drought and waterlogging intensity (ACDWI) were analyzed in each decade and in different hydrological years. The results showed that the study area was dominated by drought stress. The lowest level of drought stress was achieved under Scenario 20. The frequency of drought gradually decreased from north to south in the study area. Moreover, the ACDWI decreased with increase of precipitation during 1989 to 2019. The results indicated that it was important to store water during the dry season, while it is also necessary to control the drainage in the rainy season to drain excess water on time. The results suggested that the water depth of the main drainage ditch should be regulated by zoning and by season to alleviate crop drought and waterlogging.

Root Biomass Distribution and Soil Physical Properties of Short-Rotation Coppice American Sycamore (Platanus occidentalis L.) Grown at Different Planting Densities

Short rotation woody crops (SRWCs) provide sustainable, renewable biomass energy and offer potential ecosystem services, including increased carbon storage, reduced greenhouse gas emissions, and improved soil health. Establishing SRWCs on degraded lands has potential to enhance soil properties through root and organic matter turnover. A better understanding of SRWC planting density and its associated root turnover impacts on soil–air–water relations can improve management. In this study, we investigate the effects of planting density for a low-input American sycamore SRWC (no fertilization/irrigation) on soil physical properties for a degraded agricultural site in the North Carolina piedmont. The objectives were (1) to estimate the distributions of coarse and fine root biomass in three planting densities (10,000, 5000, and 2500 trees per hectare (tph)) and (2) to assess the effects of planting density on soil hydraulic properties and pore size distribution. Our results show that planting at 10,000 tph produced significantly higher amounts of fine root biomass than at lower planting densities (p < 0.01). In the 25,000 tph plots, there was significantly higher amounts of coarse root biomass than for higher planting densities (p < 0.05). The 10,000 tph plots had lower plant available water capacity but larger drainable porosity and saturated hydraulic conductivity compared with lower planting densities (<0.05). The 10,000 tph plots total porosity was more dominated by larger pore size fractions compared with the 5000 and 2500 tph. Generally, our findings show similar patterns of soil hydraulic properties and pore size distributions for lower planting densities. The results from 10,000 tph indicate a higher air-filled pore space at field capacity and more rapid drainage compared with lower planting densities. Both characteristics observed in the 10,000 tph are favorable for aeration and oxygen uptake, which are especially important at wet sites. Overall, the results suggest that improved soil health can be achieved from the establishment of American sycamore SRCs on marginal lands, thereby providing a green pathway to achieving environmental sustainability with woody renewable energy.

Exploration of physiological and biochemical processes of canola with exogenously applied fertilizers and plant growth regulators under drought stress

Environmental stresses may alter the nutritional profile and economic value of crops. Chemical fertilizers and phytohormones are major sources which can enhance the canola production under stressful conditions. Physio-biochemical responses of canola altered remarkably with the use of nitrogen/phosphorus/potassium (N/P/K) fertilizers and plant growth regulators (PGRs) under drought stress. The major aim of current study was to evaluate nutritional quality and physio-biochemical modulation in canola (Brassica napus L.) from early growth to seed stage with NPK and PGRs in different water regimes. To monitor biochemical and physiological processes in canola, two season field experiment was conducted as spilt plot under randomized complete block design (RCBD) with four treatments (Control, Chemical fertilizers [N (90 kg/ha), P and K (45 kg ha-1)], PGRs; indole acetic acid (IAA) 15g ha-1, gibberellic acid (GA3) 15g ha-1 and the combination of NPK and PGRs] under different irrigations regimes (60, 100, 120, 150 mm evaporations). Water stress enhanced peroxidase (POD), catalase (CAT), superoxide dismutase (SOD), polyphenol oxidase (PPO), soluble sugar, malondialdehyde (MDA), proline contents as well as leaf temperature while substantially reduced leaf water contents (21%), stomatal conductance (50%), chlorophyll contents (10-67%), membrane stability index (24%) and grain yield (30%) of canola. However, the combined application of NPK and PGR further increased the enzymatic antioxidant pool, soluble sugars, along with recovery of leaf water contents, chlorophyll contents, stomatal conductance and membrane stability index but decreased the proline contents and leaf temperature at different rate of evaporation. There is positive interaction of applied elicitors to the water stress in canola except leaf area. The outcomes depicted that the combination of NPK with PGRs improved the various morpho-physiological as well as biochemical parameters and reduced the pressure of chemical fertilizers cost about 60%. It had also reduced the deleterious effect of water limitation on the physiology and grain yield and oil contents of canola in field experiments.

Short-Term Waterlogging Depresses Early Growth of Sunflower (Helianthus annuus L.) on Saline Soils with a Shallow Water Table in the Coastal Zone of Bangladesh

Sunflower (Helianthus annuus L.), which is widely grown globally for its high-quality edible oil, is reasonably salt and drought tolerant but it is susceptible to waterlogging. In the saline coastal zone of the Ganges delta, sunflower is often exposed to sudden heavy rainfall during early growth but plant tolerance to such events is not known. Hence, we evaluated the effect of short-term soil inundation (referred to as waterlogging) for 0, 24, 48 and 72 h on sunflower at emergence, 2-leaf, and 4-leaf stages in early- and late-sown crops under field conditions (saline, clay-textured soil, and shallow groundwater). Waterlogging for 24 h did not affect sunflower at any stage but waterlogging for 48 and 72 h suppressed emergence and growth at the 2 and 4-leaf stages. Waterlogging for 72 h completely prevented the emergence for early sowing, whereas emergence was less affected for later sowing. Shoot and root dry weight were most affected at the emergence and 2-leaf stage, not at the 4-leaf stage. In conclusion, waterlogging caused by more than 24 h soil inundation at up to the 4-leaf stage severely depressed emergence and growth, indicating the need for effective drainage at sowing of sunflower in the low-lying coastal saline zone of Bangladesh.

Opportunities for Improving Waterlogging Tolerance in Cereal Crops-Physiological Traits and Genetic Mechanisms

Waterlogging occurs when soil is saturated with water, leading to anaerobic conditions in the root zone of plants. Climate change is increasing the frequency of waterlogging events, resulting in considerable crop losses. Plants respond to waterlogging stress by adventitious root growth, aerenchyma formation, energy metabolism, and phytohormone signalling. Genotypes differ in biomass reduction, photosynthesis rate, adventitious roots development, and aerenchyma formation in response to waterlogging. We reviewed the detrimental effects of waterlogging on physiological and genetic mechanisms in four major cereal crops (rice, maize, wheat, and barley). The review covers current knowledge on waterlogging tolerance mechanism, genes, and quantitative trait loci (QTL) associated with waterlogging tolerance-related traits, the conventional and modern breeding methods used in developing waterlogging tolerant germplasm. Lastly, we describe candidate genes controlling waterlogging tolerance identified in model plants Arabidopsis and rice to identify homologous genes in the less waterlogging-tolerant maize, wheat, and barley.

Flooding and Herbivory Interact to Alter Volatile Organic Compound Emissions in Two Maize Hybrids

Flooding is a major plant abiotic stress factor that is frequently experienced by plants simultaneously with other biotic stresses, including herbivory. How plant volatile emissions, which mediate interactions with a wide range of organisms, are influenced by flooding and by multiple co-occurring stress factors remains largely unexplored. Using Spodoptera frugiperda (Lepidoptera: Noctuidae) (fall armyworm) as the insect pest and two maize (Zea mays, L. Poaceae) hybrids differentially marketed for conventional and organic production, we assessed the effects of flooding, herbivory, and both stress factors on the composition of blends of emitted volatiles. Headspace volatiles were collected from all treatment combinations seven days after flooding. We documented metrics indicative of biomass allocation to determine the effects of individual and combined stressors on plant growth. We also evaluated relationships between volatile emissions and indicators of soil chemical characteristics as influenced by treatment factors. Flooding and herbivory induced the emission of volatile organic compounds (VOCs) in similar ways on both maize hybrids, but the interaction of both stress factors produced significantly larger quantities of emitted volatiles. Thirty-eight volatile compounds were identified, including green leaf volatiles, monoterpenes, an aldehyde, a benzoate ester, sesquiterpenes, a diterpene alcohol, and alkane hydrocarbons. The hybrid marketed for organic production was a stronger VOC emitter. As expected, plant biomass was detrimentally affected by flooding. Soil chemical properties were less responsive to the treatment factors. Taken together, the results suggest that flooding stress and the interactions of flooding and insect attack can shape the emission of plant volatiles and further influence insect-plant interactions.

Free Discharge of Subsurface Drainage Effluent: An Alternate Design of the Surface Drain System in Pakistan

In Pakistan, many subsurface (SS) drainage projects were launched by the Salinity Control and Reclamation Project (SCARP) to deal with twin problems (waterlogging and salinity). In some cases, sump pumps were installed for the disposal of SS effluent into surface drainage channels. Presently, sump pumps have become dysfunctional due to social and financial constraints. This study evaluates the alternate design of the Paharang drainage system that could permit the discharge of the SS drainage system in the response of gravity. The proposed design was completed after many successive trials in terms of lowering the bed level and decreasing the channel bed slope. Interconnected MS-Excel worksheets were developed to design the L-section and X-section. Design continuity of the drainage system was achieved by ensuring the bed and water levels of the receiving drain were lower than the outfalling drain. The drain cross-section was set within the present row with a few changes on the service roadside. The channel side slope was taken as 1:1.5 and the spoil bank inner and outer slopes were kept as 1:2 for the entire design. The earthwork was calculated in terms of excavation for lowering the bed level and increasing the drain section to place the excavated materials in a specific manner. The study showed that modification in the design of the Paharang drainage system is technically admissible and allows for the continuous discharge of SS drainage effluent from the area.

Long-Term Waterlogging as Factor Contributing to Hypoxia Stress Tolerance Enhancement in Cucumber: Comparative Transcriptome Analysis of Waterlogging Sensitive and Tolerant Accessions

Waterlogging (WL), excess water in the soil, is a phenomenon often occurring during plant cultivation causing low oxygen levels (hypoxia) in the soil. The aim of this study was to identify candidate genes involved in long-term waterlogging tolerance in cucumber using RNA sequencing. Here, we also determined how waterlogging pre-treatment (priming) influenced long-term memory in WL tolerant (WL-T) and WL sensitive (WL-S) i.e., DH2 and DH4 accessions, respectively. This work uncovered various differentially expressed genes (DEGs) activated in the long-term recovery in both accessions. De novo assembly generated 36,712 transcripts with an average length of 2236 bp. The results revealed that long-term waterlogging had divergent impacts on gene expression in WL-T DH2 and WL-S DH4 cucumber accessions: after 7 days of waterlogging, more DEGs in comparison to control conditions were identified in WL-S DH4 (8927) than in WL-T DH2 (5957). Additionally, 11,619 and 5007 DEGs were identified after a second waterlogging treatment in the WL-S and WL-T accessions, respectively. We identified genes associated with WL in cucumber that were especially related to enhanced glycolysis, adventitious roots development, and amino acid metabolism. qRT-PCR assay for hypoxia marker genes i.e., alcohol dehydrogenase (adh), 1-aminocyclopropane-1-carboxylate oxidase (aco) and long chain acyl-CoA synthetase 6 (lacs6) confirmed differences in response to waterlogging stress between sensitive and tolerant cucumbers and effectiveness of priming to enhance stress tolerance.

Metabolic Responses to Waterlogging Differ between Roots and Shoots and Reflect Phloem Transport Alteration in Medicago truncatula

Root oxygen deficiency that is induced by flooding (waterlogging) is a common situation in many agricultural areas, causing considerable loss in yield and productivity. Physiological and metabolic acclimation to hypoxia has mostly been studied on roots or whole seedlings under full submergence. The metabolic difference between shoots and roots during waterlogging, and how roots and shoots communicate in such a situation is much less known. In particular, the metabolic acclimation in shoots and how this, in turn, impacts on roots metabolism is not well documented. Here, we monitored changes in the metabolome of roots and shoots of barrel clover (Medicago truncatula), growth, and gas-exchange, and analyzed phloem sap exudate composition. Roots exhibited a typical response to hypoxia, such as γ-aminobutyrate and alanine accumulation, as well as a strong decline in raffinose, sucrose, hexoses, and pentoses. Leaves exhibited a strong increase in starch, sugars, sugar derivatives, and phenolics (tyrosine, tryptophan, phenylalanine, benzoate, ferulate), suggesting an inhibition of sugar export and their alternative utilization by aromatic compounds production via pentose phosphates and phosphoenolpyruvate. Accordingly, there was an enrichment in sugars and a decline in organic acids in phloem sap exudates under waterlogging. Mass-balance calculations further suggest an increased imbalance between loading by shoots and unloading by roots under waterlogging. Taken as a whole, our results are consistent with the inhibition of sugar import by waterlogged roots, leading to an increase in phloem sugar pool, which, in turn, exert negative feedback on sugar metabolism and utilization in shoots.

A nitrogenase-like enzyme system catalyzes methionine, ethylene, and methane biogenesis

Bacterial production of gaseous hydrocarbons such as ethylene and methane affects soil environments and atmospheric climate. We demonstrate that biogenic methane and ethylene from terrestrial and freshwater bacteria are directly produced by a previously unknown methionine biosynthesis pathway. This pathway, present in numerous species, uses a nitrogenase-like reductase that is distinct from known nitrogenases and nitrogenase-like reductases and specifically functions in C-S bond breakage to reduce ubiquitous and appreciable volatile organic sulfur compounds such as dimethyl sulfide and (2-methylthio)ethanol. Liberated methanethiol serves as the immediate precursor to methionine, while ethylene or methane is released into the environment. Anaerobic ethylene production by this pathway apparently explains the long-standing observation of ethylene accumulation in oxygen-depleted soils. Methane production reveals an additional bacterial pathway distinct from archaeal methanogenesis.

Root architecture and hydraulics converge for acclimation to changing water availability

Because of intense transpiration and growth, the needs of plants for water can be immense. Yet water in the soil is most often heterogeneous if not scarce due to more and more frequent and intense drought episodes. The converse context, flooding, is often associated with marked oxygen deficiency and can also challenge the plant water status. Under our feet, roots achieve an incredible challenge to meet the water demand of the plant's aerial parts under such dramatically different environmental conditions. For this, they continuously explore the soil, building a highly complex, branched architecture. On shorter time scales, roots keep adjusting their water transport capacity (their so-called hydraulics) locally or globally. While the mechanisms that directly underlie root growth and development as well as tissue hydraulics are being uncovered, the signalling mechanisms that govern their local and systemic adjustments as a function of water availability remain largely unknown. A comprehensive understanding of root architecture and hydraulics as a whole (in other terms, root hydraulic architecture) is needed to apprehend the strategies used by plants to optimize water uptake and possibly improve crops regarding this crucial trait.

Foliar Glycine Betaine or Hydrogen Peroxide Sprays Ameliorate Waterlogging Stress in Cape Gooseberry

Exogenous glycine betaine (GB) or hydrogen peroxide (H₂O₂) application has not been explored to mitigate waterlogging stress in Andean fruit trees. The objective of this study was to evaluate foliar GB or H₂O₂ application on the physiological behavior of Cape gooseberry plants under waterlogging. Two separate experiments were carried out. In the first trial, the treatment groups were: (1) plants without waterlogging and with no foliar applications, (2) plants with waterlogging and without foliar applications, and (3) waterlogged plants with 25, 50, or 100 mM of H₂O₂ or GB, respectively. The treatments in the second trial were: (1) plants without waterlogging and with no foliar applications, (2) plants with waterlogging and without foliar applications, and (3) waterlogged plants with 100 mM of H₂O₂ or GB, respectively. In the first experiment, plants with waterlogging and with exogenous GB or H₂O₂ applications at a dose of 100 mM showed higher leaf water potential (-0.5 Mpa), dry weight (1.0 g), and stomatal conductance (95 mmol·m^-2·s^-1) values. In the second experiment, exogenously supplied GB or H₂O₂ also increased the relative growth rate, and leaf photosynthesis mitigating waterlogging stress. These results show that short-term GB or H₂O₂ supply can be a tool in managing waterlogging in Cape gooseberry.

Foliar treatment of potassium nitrate modulates the fermentative and sucrose metabolizing pathways in contrasting maize genotypes under water logging stress

The effect of potassium nitrate on the status of fermentative and sucrose metabolizing pathways was studied in two maize (Zea mays L.) genotypes, viz., LM 5 (relatively susceptible to flooding) and I 167 (relatively tolerant to flooding) under water logging stress. The higher increase in pyruvate decarboxylase, alcohol dehydrogenase and aldehyde dehydrogenase activities in the hypoxic roots of I 167 seedlings over LM 5 showed the former's efficient tolerance mechanism towards anaerobic conditions. Foliar application of KNO₃ reduced these enzymatic activities in the roots of both the genotypes. The shoots of I 167 seedlings also showed a parallel increase in alcohol dehydrogenase and pyruvate decarboxylase activities under water logging stress. These enzymatic activities, however, remained unaffected in shoots of water logged LM 5 seedlings. There was a higher decrease in acid and alkaline invertase activities in the hypoxic roots of I 167 seedlings. KNO₃ treatment led to higher acid invertase activity in roots of I 167 seedlings than those of LM 5. Sucrose synthase (synthesis) and sucrose phosphate synthase activities decreased, but sucrose synthase (breakdown) activity increased in the roots of both the genotypes, during water logging. KNO₃ increased sucrose synthesizing activities with a parallel increase in the sucrose content of the roots. Sucrose synthesis was comparatively unaffected in I 167 shoots under water logging stress while LM 5 shoots showed higher reduction in its sucrose synthase (synthesis) and sucrose phosphate synthase activities. It may thus be concluded that KNO₃ induced a network of reactions for improving water logging tolerance. The nitrate ions acted as an alternate electron acceptor and thus reduced the activities of fermentative enzymes. It promoted the funneling of sugars into the glycolytic pathway by inducing the activities of acid and alkaline invertases in the roots and shoots of maize genotypes. It also directed the hexoses towards biosynthetic pathway by increasing the activities of sucrose synthesizing enzymes.