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Ramos Chevreuil L, Pessoa VA, da Silva GL, Dos Santos Gouvea PR, do Nascimento Soares LB, Sales-Campos C. Recovery of Proteases and Protease Inhibitors from Ganoderma spp. Cultivated in Amazonian Lignocellulose Wastes. Curr Protein Pept Sci 2025; 26:76-88. [PMID: 38919002 DOI: 10.2174/0113892037297181240605112831] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Revised: 05/11/2024] [Accepted: 05/15/2024] [Indexed: 06/27/2024]
Abstract
BACKGROUND Ganoderma spp. are a great source of bioactive molecules. The production and recovery of bioactive molecules vary according to strain, growth substrate, and extraction solution. Variations in protease and their inhibitors in basidiomata from a commercial strain (G. lingzhi) and an Amazonian isolate (Ganoderma sp.) cultivated in Amazonian lignocellulosic wastes and extracted with different solutions are plausible and were investigated in our study. METHODS Basidiomata from cultivation in substrates based on açaí seed, guaruba-cedro sawdust and three lots of marupá sawdust were submitted to extraction in water, Tris-HCl, and sodium phosphate. Protein content, proteases, and protease inhibitors were estimated through different assays. The samples were characterized by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and Fourier transform infrared spectroscopy with attenuated total reflectance (FTIR-ATR). RESULTS Tris-HCl provided higher protein extraction from Ganoderma sp. and higher caseinolytic, gelatinolytic, and fibrinolytic activity for G. lingzhi cultivated in açaí. Water extracts of Ganoderma sp., in general, exhibited higher trypsin and papain inhibitor activities compared to G. lingzhi. Extracts in Tris-HCl and sodium phosphate showed more intense protein bands in SDSPAGE, highlighting bands of molecular weights around 100, 50, and 30 kDa. FTIR spectra showed patterns for proteins in all extracts, with variation in transmittance according to substrate and extractor. CONCLUSION Water extract from Amazonian Ganoderma sp. cultivated in marupá wastes are promising as a source of protease inhibitors, while the Tris-HCL extract of G. lingzhi from açaí cultivation stands out as a source of proteases with fibrinolytic, caseinolytic, and gelatinolytic activities.
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Affiliation(s)
- Larissa Ramos Chevreuil
- Edible Fungi Cultivation Laboratory, National Institute for Amazonian Research, Av. André Araújo, 69067-375, Amazonas, Brazil
| | - Vitor Alves Pessoa
- Edible Fungi Cultivation Laboratory, National Institute for Amazonian Research, Av. André Araújo, 69067-375, Amazonas, Brazil
- Postgraduate Program in Biotechnology, Federal University of Amazonas, Av. General Rodrigo Octavio, 69067-005, Amazonas, Brazil
| | - Giovanna Lima da Silva
- Edible Fungi Cultivation Laboratory, National Institute for Amazonian Research, Av. André Araújo, 69067-375, Amazonas, Brazil
- Postgraduate Program in Biotechnology, Federal University of Amazonas, Av. General Rodrigo Octavio, 69067-005, Amazonas, Brazil
| | - Paula Romenya Dos Santos Gouvea
- Edible Fungi Cultivation Laboratory, National Institute for Amazonian Research, Av. André Araújo, 69067-375, Amazonas, Brazil
- Postgraduate Program in Biotechnology, Federal University of Amazonas, Av. General Rodrigo Octavio, 69067-005, Amazonas, Brazil
| | - Larissa Batista do Nascimento Soares
- Edible Fungi Cultivation Laboratory, National Institute for Amazonian Research, Av. André Araújo, 69067-375, Amazonas, Brazil
- Postgraduate Program in Biodiversity and Biotechnology of the Bionorte Network, State University of Amazonas, Av. Carvalho Leal, 69065-001, Amazonas, Brazil
| | - Ceci Sales-Campos
- Edible Fungi Cultivation Laboratory, National Institute for Amazonian Research, Av. André Araújo, 69067-375, Amazonas, Brazil
- Postgraduate Program in Biotechnology, Federal University of Amazonas, Av. General Rodrigo Octavio, 69067-005, Amazonas, Brazil
- Postgraduate Program in Biodiversity and Biotechnology of the Bionorte Network, State University of Amazonas, Av. Carvalho Leal, 69065-001, Amazonas, Brazil
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Millatina NRN, Calle JLP, Barea-Sepúlveda M, Setyaningsih W, Palma M. Detection and quantification of cocoa powder adulteration using Vis-NIR spectroscopy with chemometrics approach. Food Chem 2024; 449:139212. [PMID: 38583399 DOI: 10.1016/j.foodchem.2024.139212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Revised: 03/12/2024] [Accepted: 03/31/2024] [Indexed: 04/09/2024]
Abstract
The rising demand for cocoa powder has resulted in an upsurge in market prices, leading to the emergence of adulteration practices aimed at achieving economic benefits. This study aimed to detect and quantify cocoa powder adulteration using visible and near-infrared spectroscopy (Vis-NIRS). The adulterants used in this study were powdered carob, cocoa shell, foxtail millet, soybean, and whole wheat. The NIRS data could not be resolved using Savitzky-Golay smoothing. Nevertheless, the application of a random forest and support vector machine successfully classified the samples with 100% accuracy. Quantification of adulteration using partial least squares (PLS), Lasso, Ridge, elastic Net, and RF regressions provided R2 higher than 0.96 and root mean square error <2.6. Coupling PLS with the Boruta algorithm produced the most reliable regression model (R2 = 1, RMSE = 0.0000). Finally, an online application was prepared to facilitate the determination of adulterants in the cocoa powder.
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Affiliation(s)
- Nela Rifda Nur Millatina
- Department of Food and Agricultural Product Technology, Faculty of Agricultural Technology, Universitas Gadjah Mada, Jalan Flora, Bulaksumur, 55281 Yogyakarta, Indonesia
| | - José Luis Pérez Calle
- Department of Analytical Chemistry, Faculty of Sciences, IVAGRO, University of Cadiz, Campus de Excelencia Internacional Agroalimentario (CeiA3), Campus del Rio San Pedro, 11510, Puerto Real, Cádiz, Spain
| | - Marta Barea-Sepúlveda
- Department of Analytical Chemistry, Faculty of Sciences, IVAGRO, University of Cadiz, Campus de Excelencia Internacional Agroalimentario (CeiA3), Campus del Rio San Pedro, 11510, Puerto Real, Cádiz, Spain
| | - Widiastuti Setyaningsih
- Department of Food and Agricultural Product Technology, Faculty of Agricultural Technology, Universitas Gadjah Mada, Jalan Flora, Bulaksumur, 55281 Yogyakarta, Indonesia..
| | - Miguel Palma
- Department of Analytical Chemistry, Faculty of Sciences, IVAGRO, University of Cadiz, Campus de Excelencia Internacional Agroalimentario (CeiA3), Campus del Rio San Pedro, 11510, Puerto Real, Cádiz, Spain
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Qi G, Hao L, Xin T, Gan Y, Lou Q, Xu W, Song J. Analysis of Whole-Genome facilitates rapid and precise identification of fungal species. Front Microbiol 2024; 15:1336143. [PMID: 38500585 PMCID: PMC10946254 DOI: 10.3389/fmicb.2024.1336143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Accepted: 02/13/2024] [Indexed: 03/20/2024] Open
Abstract
Fungal identification is a cornerstone of fungal research, yet traditional molecular methods struggle with rapid and accurate onsite identification, especially for closely related species. To tackle this challenge, we introduce a universal identification method called Analysis of whole GEnome (AGE). AGE includes two key steps: bioinformatics analysis and experimental practice. Bioinformatics analysis screens candidate target sequences named Targets within the genome of the fungal species and determines specific Targets by comparing them with the genomes of other species. Then, experimental practice using sequencing or non-sequencing technologies would confirm the results of bioinformatics analysis. Accordingly, AGE obtained more than 1,000,000 qualified Targets for each of the 13 fungal species within the phyla Ascomycota and Basidiomycota. Next, the sequencing and genome editing system validated the ultra-specific performance of the specific Targets; especially noteworthy is the first-time demonstration of the identification potential of sequences from unannotated genomic regions. Furthermore, by combining rapid isothermal amplification and phosphorothioate-modified primers with the option of an instrument-free visual fluorescence method, AGE can achieve qualitative species identification within 30 min using a single-tube test. More importantly, AGE holds significant potential for identifying closely related species and differentiating traditional Chinese medicines from their adulterants, especially in the precise detection of contaminants. In summary, AGE opens the door for the development of whole-genome-based fungal species identification while also providing guidance for its application in plant and animal kingdoms.
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Affiliation(s)
- Guihong Qi
- Key Lab of Chinese Medicine Resources Conservation, State Administration of Traditional Chinese Medicine of the People’s Republic of China, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Lijun Hao
- Key Lab of Chinese Medicine Resources Conservation, State Administration of Traditional Chinese Medicine of the People’s Republic of China, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Tianyi Xin
- Key Lab of Chinese Medicine Resources Conservation, State Administration of Traditional Chinese Medicine of the People’s Republic of China, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Yutong Gan
- Key Lab of Chinese Medicine Resources Conservation, State Administration of Traditional Chinese Medicine of the People’s Republic of China, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Qian Lou
- Key Lab of Chinese Medicine Resources Conservation, State Administration of Traditional Chinese Medicine of the People’s Republic of China, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Wenjie Xu
- Key Lab of Chinese Medicine Resources Conservation, State Administration of Traditional Chinese Medicine of the People’s Republic of China, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
| | - Jingyuan Song
- Key Lab of Chinese Medicine Resources Conservation, State Administration of Traditional Chinese Medicine of the People’s Republic of China, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
- Engineering Research Center of Chinese Medicine Resource, Ministry of Education, Beijing, China
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4
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Makauki E, Mtavangu SG, Basu OD, Rwiza M, Machunda R. Facile biosynthesis of Ag-ZnO nanocomposites using Launaea cornuta leaf extract and their antimicrobial activity. DISCOVER NANO 2023; 18:142. [PMID: 37975945 PMCID: PMC10656379 DOI: 10.1186/s11671-023-03925-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Accepted: 11/14/2023] [Indexed: 11/19/2023]
Abstract
The quest to synthesize safe, non-hazardous Ag-ZnO nanoomposites (NCs) with improved physical and chemical properties has necessitated green synthesis approaches. In this research, Launaea cornuta leaf extract was proposed for the green synthesis of Ag-ZnO NCs, wherein the leaf extract was used as a reducing and capping agent. The antibacterial activity of the prepared nanoomposites was investigated against Escherichia coli and Staphylococcus aureus through the disc diffusion method. The influence of the synthesis temperature, pH, and precursor concentration on the synthesis of the Ag-ZnO NCs and antimicrobial efficacy were investigated. The nanoparticles were characterized by ATR-FTIR, XRD, UV-Vis, FESEM, and TEM. The FTIR results indicated the presence of secondary metabolites in Launaea cornuta which assisted the green synthesis of the nanoparticles. The XRD results confirmed the successful synthesis of crystalline Ag-ZnO NCs with an average particle size of 21.51 nm. The SEM and TEM images indicated the synthesized nanoparticles to be spherical in shape. The optimum synthesis conditions for Ag-ZnO NCs were at 70 °C, pH of 7, and 8% silver. Antibacterial activity results show Ag-ZnO NCs to have higher microbial inhibition on E. coli than on S. aureus with the zones of inhibition of 21 ± 1.08 and 19.67 ± 0.47 mm, respectively. Therefore, the results suggest that Launaea cornuta leaf extract can be used for the synthesis of Ag-ZnO NCs.
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Affiliation(s)
- Elizabeth Makauki
- School of Materials Energy Water and Environmental Sciences, Nelson Mandela African Institution of Science and Technology, Arusha, Tanzania.
| | - Stanslaus George Mtavangu
- Department of Chemical Engineering, Faculty of Engineering Sciences, KU Leuven, Leuven, Belgium
- Department of Chemistry, Dar es Salaam University College of Education, Dar es Salaam, Tanzania
| | - Onita D Basu
- Department of Civil and Environmental Engineering, Faculty of Engineering and Design, Carleton University, Ottawa, Canada
| | - Mwemezi Rwiza
- School of Materials Energy Water and Environmental Sciences, Nelson Mandela African Institution of Science and Technology, Arusha, Tanzania
| | - Revocatus Machunda
- School of Materials Energy Water and Environmental Sciences, Nelson Mandela African Institution of Science and Technology, Arusha, Tanzania
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Huo J, Zhang M, Wang D, S Mujumdar A, Bhandari B, Zhang L. New preservation and detection technologies for edible mushrooms: A review. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2023; 103:3230-3248. [PMID: 36700618 DOI: 10.1002/jsfa.12472] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 09/11/2022] [Accepted: 01/26/2023] [Indexed: 06/17/2023]
Abstract
Edible mushrooms are nutritious, tasty, and have medicinal value, which makes them very popular. Fresh mushrooms have a high water content and a crisp texture. They demonstrate strong metabolic activity after harvesting. However, they are prone to textural changes, microbial infestation, and nutritional and flavor loss, and they therefore require appropriate post-harvest processing and preservation. Important factors affecting safety and quality during their processing and storage include their quality, source, microbial contamination, physical damage, and chemical residues. Thus, these aspects should be tested carefully to ensure safety. In recent years, many new techniques have been used to preserve mushrooms, including electrofluidic drying and cold plasma treatment, as well as new packaging and coating technologies. In terms of detection, many new detection techniques, such as nuclear magnetic resonance (NMR), imaging technology, and spectroscopy can be used as rapid and effective means of detection. This paper reviews the new technological methods for processing and detecting the quality of mainstream edible mushrooms. It mainly introduces their working principles and application, and highlights the future direction of preservation, processing, and quality detection technologies for edible mushrooms. Adopting appropriate post-harvest processing and preservation techniques can maintain the organoleptic properties, nutrition, and flavor of mushrooms effectively. The use of rapid, accurate, and non-destructive testing methods can provide a strong assurance of food safety. At present, these new processing, preservation and testing methods have achieved good results but at the same time there are certain shortcomings. So it is recommended that they also be continuously researched and improved, for example through the use of new technologies and combinations of different technologies. © 2023 Society of Chemical Industry.
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Affiliation(s)
- Jingyi Huo
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China
- China General Chamber of Commerce Key Laboratory on Fresh Food Processing & Preservation, Jiangnan University, Wuxi, China
| | - Min Zhang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China
- Jiangsu Province International Joint Laboratory on Fresh Food Smart Processing and Quality Monitoring, Jiangnan University, Wuxi, China
| | - Dayuan Wang
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China
- China General Chamber of Commerce Key Laboratory on Fresh Food Processing & Preservation, Jiangnan University, Wuxi, China
| | - Arun S Mujumdar
- Department of Bioresource Engineering, Macdonald College, McGill University, Quebec, Canada
| | - Bhesh Bhandari
- School of Agriculture and Food Sciences, University of Queensland, Brisbane, Australia
| | - Lujun Zhang
- R&D Center, Shandong Qihe Biotechnology Co., Ltd, Zibo, China
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6
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Chen R, Liu F, Zhang C, Wang W, Yang R, Zhao Y, Peng J, Kong W, Huang J. Trends in digital detection for the quality and safety of herbs using infrared and Raman spectroscopy. FRONTIERS IN PLANT SCIENCE 2023; 14:1128300. [PMID: 37025139 PMCID: PMC10072231 DOI: 10.3389/fpls.2023.1128300] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Accepted: 02/27/2023] [Indexed: 06/19/2023]
Abstract
Herbs have been used as natural remedies for disease treatment, prevention, and health care. Some herbs with functional properties are also used as food or food additives for culinary purposes. The quality and safety inspection of herbs are influenced by various factors, which need to be assessed in each operation across the whole process of herb production. Traditional analysis methods are time-consuming and laborious, without quick response, which limits industry development and digital detection. Considering the efficiency and accuracy, faster, cheaper, and more environment-friendly techniques are highly needed to complement or replace the conventional chemical analysis methods. Infrared (IR) and Raman spectroscopy techniques have been applied to the quality control and safety inspection of herbs during the last several decades. In this paper, we generalize the current application using IR and Raman spectroscopy techniques across the whole process, from raw materials to patent herbal products. The challenges and remarks were proposed in the end, which serve as references for improving herb detection based on IR and Raman spectroscopy techniques. Meanwhile, make a path to driving intelligence and automation of herb products factories.
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Affiliation(s)
- Rongqin Chen
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, China
| | - Fei Liu
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, China
| | - Chu Zhang
- School of Information Engineering, Huzhou University, Huzhou, China
| | - Wei Wang
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, China
| | - Rui Yang
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, China
| | - Yiying Zhao
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, China
| | - Jiyu Peng
- College of Mechanical Engineering, Zhejiang University of Technology, Hangzhou, China
| | - Wenwen Kong
- College of Mathematics and Computer Science, Zhejiang A & F University, Hangzhou, China
| | - Jing Huang
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou, China
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7
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Li YF, Tian ZX, Shi B, He YB, Long MX. Synthesis and structural characterization of β -cyclodextrin butenate. Des Monomers Polym 2023; 26:132-139. [PMID: 37125223 PMCID: PMC10142337 DOI: 10.1080/15685551.2023.2205741] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/02/2023] Open
Abstract
β-cyclodextrin butenate was synthesized by using N, N'-Carbonyldiimidazole (CDI) activating reagent and 4-Dimethylaminopyridine (DMAP) as catalyst. The best preparation condition of β-CD butenate was described as below: reaction temperature was 25°C, concentration of 2-butenoic acid was 450 mmol/L, concentration of DMAP was 12.5 mmol/L and reaction time was 20 minutes and at this condition the yield of β-CD butenate was 0.83 mmol/g. According to the results of FT-IR spectrum, NMR spectroscopy and HPLC-QTof-mass spectrum of β-CD butenate, there were four types β-CD butenate synthesized, which were β-CD-2-butenoic acid monoester, β-CD-2-butenoic acid diester, β-CD-2-butenoic acid triester and β-CD-2-butenoic acid tetraester, respectively.
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Affiliation(s)
- Yong-Fu Li
- Integrated Rural Development Center, Guizhou Academy of Agricultural Science, Guiyang, Guizhou, China
- CONTACT Yong-Fu Li Integrated Rural Development Center, Guizhou Academy of Agricultural Science, Guiyang, Guizhou, China
| | - Zhu-Xi Tian
- Integrated Rural Development Center, Guizhou Academy of Agricultural Science, Guiyang, Guizhou, China
| | - Bin Shi
- Integrated Rural Development Center, Guizhou Academy of Agricultural Science, Guiyang, Guizhou, China
| | - Yang-Bo He
- Integrated Rural Development Center, Guizhou Academy of Agricultural Science, Guiyang, Guizhou, China
| | - Ming-Xiu Long
- Integrated Rural Development Center, Guizhou Academy of Agricultural Science, Guiyang, Guizhou, China
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8
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Nguyen TT, Nguyen NH, Pham GT, Vongsvivut J, Brown MH, Truong VK, Vasilev K. Synchrotron macro ATR-FTIR micro-spectroscopy to unlock silver ion-induced biochemical alterations in bacteria. MATERIALS ADVANCES 2023; 4:6342-6352. [DOI: 10.1039/d3ma00598d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/04/2025]
Abstract
The use of synchrotron macro ATR-FTIR micro-spectroscopy to reveal the antibacterial mechanism of silver ions against S. aureus and P. aeruginosa.
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Affiliation(s)
- Tien Thanh Nguyen
- College of Medicine and Pharmacy, Tra Vinh University, Tra Vinh 87000, Vietnam
- Biomedical Nanoengineering Laboratory, College of Medicine and Public Health, Flinders University, Bedford Park, SA 5042, Australia
| | - Ngoc Huu Nguyen
- Biomedical Nanoengineering Laboratory, College of Medicine and Public Health, Flinders University, Bedford Park, SA 5042, Australia
- School of Biomedical Engineering, University of Sydney, Darlington, NSW 2006, Australia
| | - Giang Tuyet Pham
- Biomedical Nanoengineering Laboratory, College of Medicine and Public Health, Flinders University, Bedford Park, SA 5042, Australia
| | - Jitraporn Vongsvivut
- Infrared Microspectroscopy Beamline, ANSTO Australian Synchrotron, Clayton, VIC 3168, Australia
| | - Melissa H. Brown
- College of Science and Engineering, Flinders University, Bedford Park, SA 5042, Australia
| | - Vi Khanh Truong
- Biomedical Nanoengineering Laboratory, College of Medicine and Public Health, Flinders University, Bedford Park, SA 5042, Australia
| | - Krasimir Vasilev
- Biomedical Nanoengineering Laboratory, College of Medicine and Public Health, Flinders University, Bedford Park, SA 5042, Australia
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9
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Asymmetrical flow field-flow fractionation combined with liquid chromatography enables rapid, quantitative, and structurally informative detection of resistant starch. Microchem J 2022. [DOI: 10.1016/j.microc.2022.107787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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10
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Mao Y, Li H, Wang Y, Fan K, Song Y, Han X, Zhang J, Ding S, Song D, Wang H, Ding Z. Prediction of Tea Polyphenols, Free Amino Acids and Caffeine Content in Tea Leaves during Wilting and Fermentation Using Hyperspectral Imaging. Foods 2022; 11:foods11162537. [PMID: 36010536 PMCID: PMC9407140 DOI: 10.3390/foods11162537] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 08/02/2022] [Accepted: 08/17/2022] [Indexed: 11/16/2022] Open
Abstract
The withering and fermentation degrees are the key parameters to measure the processing technology of black tea. The traditional methods to judge the degree of withering and fermentation are time-consuming and inefficient. Here, a monitoring model of the biochemical components of tea leaves based on hyperspectral imaging technology was established to quantitatively judge the withering and fermentation degrees of fresh tea leaves. Hyperspectral imaging technology was used to obtain the spectral data during the withering and fermentation of the raw materials. The successive projections algorithm (SPA), competitive adaptive reweighted sampling (CARS), and uninformative variable elimination (UVE) are used to select the characteristic bands. Combined with the support vector machine (SVM), random forest (RF), and partial least square (PLS) methods, the monitoring models of the tea polyphenols (TPs), free amino acids (FAA) and caffeine (CAF) contents were established. The results show that: (1) CARS performs the best among the three feature band selection methods, and PLS performs the best among the three machine learning models; (2) the optimal models for predicting the content of the TPs, FAA, and CAF are CARS-PLS, SPA-PLS, and CARS-PLS, respectively, and the coefficient of determination of the prediction set is 0.91, 0.88, and 0.81, respectively; and (3) the best models for quantitatively judging the withering and fermentation degrees are FAA-SPA-PLS and TPs-CARS-PLS, respectively. The model proposed in this study can improve the monitoring efficiency of the biochemical components of tea leaves and provide a basis for the intelligent judgment of the withering and fermentation degrees in the process of black tea processing.
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Affiliation(s)
- Yilin Mao
- Tea Research Institute, Qingdao Agricultural University, Qingdao 266109, China
| | - He Li
- Tea Research Institute, Qingdao Agricultural University, Qingdao 266109, China
| | - Yu Wang
- Tea Research Institute, Qingdao Agricultural University, Qingdao 266109, China
| | - Kai Fan
- Tea Research Institute, Qingdao Agricultural University, Qingdao 266109, China
| | - Yujie Song
- Tea Research Institute, Qingdao Agricultural University, Qingdao 266109, China
| | - Xiao Han
- Tea Research Institute, Qingdao Agricultural University, Qingdao 266109, China
| | - Jie Zhang
- Tea Research Institute, Qingdao Agricultural University, Qingdao 266109, China
| | - Shibo Ding
- Tea Research Institute, Rizhao Academy of Agricultural Sciences, Rizhao 276800, China
| | - Dapeng Song
- Tea Research Institute, Rizhao Academy of Agricultural Sciences, Rizhao 276800, China
| | - Hui Wang
- Tea Research Institute, Rizhao Academy of Agricultural Sciences, Rizhao 276800, China
| | - Zhaotang Ding
- Tea Research Institute, Qingdao Agricultural University, Qingdao 266109, China
- Tea Research Institute, Shandong Academy of Agricultural Sciences, Jinan 250100, China
- Correspondence:
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11
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Dai Y, Dai Z, Guo G, Wang B. Nondestructive Identification of Rice Varieties by the Data Fusion of Raman and Near-Infrared (NIR) Spectroscopies. ANAL LETT 2022. [DOI: 10.1080/00032719.2022.2101060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
Affiliation(s)
- Yuanfeng Dai
- Shanghai Institute of Technical Physics, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Chinese Academy of Sciences, Beijing, China
| | - Zuoxiao Dai
- Shanghai Institute of Technical Physics, Chinese Academy of Sciences, Shanghai, China
| | - Guangzhi Guo
- Shanghai Institute of Technical Physics, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Chinese Academy of Sciences, Beijing, China
| | - Boran Wang
- School of Microelectronics, Fudan University, Shanghai, China
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12
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Virtanen V, Tafintseva V, Shaikh R, Nippolainen E, Haas J, Afara I, Töyräs J, Kröger H, Solheim J, Zimmermann B, Kohler A, Mizaikoff B, Finnilä M, Rieppo L, Saarakkala S. Infrared spectroscopy is suitable for objective assessment of articular cartilage health. OSTEOARTHRITIS AND CARTILAGE OPEN 2022; 4:100250. [DOI: 10.1016/j.ocarto.2022.100250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2021] [Accepted: 02/28/2022] [Indexed: 10/18/2022] Open
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13
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Esteves CS, de Redrojo EM, Luis García Manjón J, Moreno G, Antunes FE, Montalvo García G, Ortega-Ojeda FE. Combining FTIR-ATR and OPLS-DA methods for magic mushrooms discrimination. Forensic Chem 2022. [DOI: 10.1016/j.forc.2022.100421] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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14
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Wang L, Liu H, Li T, Li J, Wang Y. Verified the rapid evaluation of the edible safety of wild porcini mushrooms, using deep learning and PLS-DA. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2022; 102:1531-1539. [PMID: 34402067 DOI: 10.1002/jsfa.11488] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Revised: 07/30/2021] [Accepted: 08/16/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND How to quickly identify poisonous mushrooms is a worldwide problem, because poisonous mushrooms and edible mushrooms have very similar appearances. Even some edible mushrooms must be processed further before they can be eaten. In addition, mushrooms from different geographical origins contain different levels of heavy metals. Eating frequent mushrooms with excessive heavy metal content can also cause food poisoning. This information is very important and needs to be informed to consumers in advance. Through the demand for the safety of porcini mushrooms in the Yunnan area we propose a hierarchical identification system based on Fourier-transform near-infrared (FT-NIR) spectroscopy to evaluate the edible safety of porcini species. RESULTS We found that deep learning is the most effective means to identify the edible safety of porcini, and the recognition accuracy was 100%, by comparing two pattern recognition tools, deep learning and partial least square discriminant analysis (PLS-DA). Although the accuracy of the PLS-DA test set is 96.10%, the poisonous porcini is not allowed to be wrongly judged. In addition, the cadmium (Cd) content of Leccinum rugosiceps in the Midu area exceeded the standard. Deep learning can trace Le. rugosiceps geographic origin with an accuracy of 100%. CONCLUSION The overall results show that deep learning methods based on FT-NIR can identify porcini that is at risk of being eaten. This has useful application prospects in food safety. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Li Wang
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming, China
- Medicinal Plants Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, China
| | - Honggao Liu
- College of Agronomy and Life Sciences, Zhaotong University, Zhaotong, China
| | - Tao Li
- College of Resources and Environment, Yuxi Normal University, Yuxi, China
| | - Jieqing Li
- College of Resources and Environment, Yunnan Agricultural University, Kunming, China
| | - Yuanzhong Wang
- Medicinal Plants Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, China
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15
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Braun CA, Nam SL, de la Mata AP, Harynuk J, Chung H, Dolez PI. Hydrothermal aging of polyimide film. J Appl Polym Sci 2022. [DOI: 10.1002/app.52183] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Christina Anna Braun
- Department of Human Ecology University of Alberta Edmonton Alberta Canada
- Department of Chemical and Materials Engineering University of Alberta Edmonton Alberta Canada
| | - Seo Lin Nam
- Department of Chemistry University of Alberta Edmonton Alberta Canada
| | | | - James Harynuk
- Department of Chemistry University of Alberta Edmonton Alberta Canada
| | - Hyun‐Joong Chung
- Department of Chemical and Materials Engineering University of Alberta Edmonton Alberta Canada
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16
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Wei Y, Li L, Liu Y, Xiang S, Zhang H, Yi L, Shang Y, Xu W. Identification techniques and detection methods of edible fungi species. Food Chem 2021; 374:131803. [PMID: 34915377 DOI: 10.1016/j.foodchem.2021.131803] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Revised: 11/12/2021] [Accepted: 12/03/2021] [Indexed: 12/15/2022]
Abstract
Edible fungi have high nutritional value and great potential. Confusion among edible fungi species, and foodborne diseases due to toadstool poisoning or death induced by inadvertent consumption exist across the world. Therefore, edible fungi must be accurately identified. Based on different substances in edible fungi, there are different detection methods, and the same method can use different identification technology. Sensory identification methods include morphological and odor methods. Instrumental analysis methods based on chemical composition include chromatographic, mass spectrometry and spectral technology. Molecular biology identification methods based on nucleic acids include molecular marker technology, sequencing technology, isothermal amplification technology and endogenous reference gene method. Method is channel, and technology is the means. The principles, advantages, disadvantages and applications of various identification techniques and detection methods were discussed in this work to provide reference for the identification research of edible fungi and technical support for preventing food safety incidents caused by toadstools.
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Affiliation(s)
- Yuanmiao Wei
- Yunnan Institute of Food Safety, Kunming University of Science and Technology, Kunming 650500, China
| | - Ling Li
- Yunnan Institute of Food Safety, Kunming University of Science and Technology, Kunming 650500, China
| | - Yao Liu
- Yunnan Institute of Food Safety, Kunming University of Science and Technology, Kunming 650500, China
| | - Shuna Xiang
- Yunnan Institute of Food Safety, Kunming University of Science and Technology, Kunming 650500, China
| | - Hanyue Zhang
- Yunnan Institute of Food Safety, Kunming University of Science and Technology, Kunming 650500, China
| | - Lunzhao Yi
- Yunnan Institute of Food Safety, Kunming University of Science and Technology, Kunming 650500, China
| | - Ying Shang
- Yunnan Institute of Food Safety, Kunming University of Science and Technology, Kunming 650500, China.
| | - Wentao Xu
- Department of Nutrition and Health, China Agricultural University, Beijing 100083, China.
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17
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Yang H, Bao L, Liu Y, Luo S, Zhao F, Chen G, Liu F. Identification and quantitative analysis of salt-adulterated honeysuckle using infrared spectroscopy coupled with multi-chemometrics. Microchem J 2021. [DOI: 10.1016/j.microc.2021.106829] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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18
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Virtanen V, Nippolainen E, Shaikh R, Afara IO, Töyräs J, Solheim J, Tafintseva V, Zimmermann B, Kohler A, Saarakkala S, Rieppo L. Infrared Fiber-Optic Spectroscopy Detects Bovine Articular Cartilage Degeneration. Cartilage 2021; 13:285S-294S. [PMID: 33615831 PMCID: PMC8804829 DOI: 10.1177/1947603521993221] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
OBJECTIVE Joint injuries may lead to degeneration of cartilage tissue and initiate development of posttraumatic osteoarthritis. Arthroscopic surgeries can be used to treat joint injuries, but arthroscopic evaluation of articular cartilage quality is subjective. Fourier transform infrared spectroscopy combined with fiber optics and attenuated total reflectance crystal could be used for the assessment of tissue quality during arthroscopy. We hypothesize that fiber-optic mid-infrared spectroscopy can detect enzymatically and mechanically induced damage similar to changes occurring during progression of osteoarthritis. DESIGN Bovine patellar cartilage plugs were extracted and degraded enzymatically and mechanically. Adjacent untreated samples were utilized as controls. Enzymatic degradation was done using collagenase and trypsin enzymes. Mechanical damage was induced by (1) dropping a weight impactor on the cartilage plugs and (2) abrading the cartilage surface with a rotating sandpaper. Fiber-optic mid-infrared spectroscopic measurements were conducted before and after treatments, and spectral changes were assessed with random forest, partial least squares discriminant analysis, and support vector machine classifiers. RESULTS All models had excellent classification performance for detecting the different enzymatic and mechanical damage on cartilage matrix. Random forest models achieved accuracies between 90.3% and 77.8%, while partial least squares model accuracies ranged from 95.8% to 84.7%, and support vector machine accuracies from 91.7% to 80.6%. CONCLUSIONS The results suggest that fiber-optic Fourier transform infrared spectroscopy attenuated total reflectance spectroscopy is a viable way to detect minor and major degeneration of articular cartilage. Objective measures provided by fiber-optic spectroscopic methods could improve arthroscopic evaluation of cartilage damage.
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Affiliation(s)
- Vesa Virtanen
- Research Unit of Medical Imaging,
Physics and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland,Vesa Virtanen, Research Unit of Medical
Imaging, Physics and Technology, Faculty of Medicine, University of Oulu,
Aapistie 5 A, Oulu, Pohjois-Pohjanmaa 90220, Finland.
| | - Ervin Nippolainen
- Department of Applied Physics,
University of Eastern Finland, Kuopio, Finland
| | - Rubina Shaikh
- Department of Applied Physics,
University of Eastern Finland, Kuopio, Finland
| | - Isaac O. Afara
- Department of Applied Physics,
University of Eastern Finland, Kuopio, Finland,School of Information Technology and
Electrical Engineering, The University of Queensland, Brisbane, Queensland,
Australia
| | - Juha Töyräs
- Department of Applied Physics,
University of Eastern Finland, Kuopio, Finland,Diagnostic Imaging Center, Kuopio
University Hospital, Kuopio, Finland,School of Information Technology and
Electrical Engineering, The University of Queensland, Brisbane, Queensland,
Australia
| | - Johanne Solheim
- Biospectroscopy and Data Modeling Group,
Faculty of Science and Technology, Norwegian University of Life Sciences, Ås,
Norway
| | - Valeria Tafintseva
- Biospectroscopy and Data Modeling Group,
Faculty of Science and Technology, Norwegian University of Life Sciences, Ås,
Norway
| | - Boris Zimmermann
- Biospectroscopy and Data Modeling Group,
Faculty of Science and Technology, Norwegian University of Life Sciences, Ås,
Norway
| | - Achim Kohler
- Biospectroscopy and Data Modeling Group,
Faculty of Science and Technology, Norwegian University of Life Sciences, Ås,
Norway
| | - Simo Saarakkala
- Research Unit of Medical Imaging,
Physics and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland,Department of Diagnostic Radiology, Oulu
University Hospital, Oulu, Finland
| | - Lassi Rieppo
- Research Unit of Medical Imaging,
Physics and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland
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19
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Yue J, Li Z, Zuo Z, Zhao Y, Zhang J, Wang Y. Study on the identification and evaluation of growth years for Paris polyphylla var. yunnanensis using deep learning combined with 2DCOS. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 261:120033. [PMID: 34111837 DOI: 10.1016/j.saa.2021.120033] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Revised: 05/23/2021] [Accepted: 05/27/2021] [Indexed: 06/12/2023]
Abstract
Paris polyphylla var. yunnanensis, as perennial plants, its quality is closely related to growth period. Different harvest years determine the dry matter accumulation of its medicinal parts and the dynamic accumulation of active ingredients, as well as its economic value and medicinal value. Therefore, it is necessary to establish a systematic evaluation method for the identification and evaluation of P. polyphylla var. yunnanensis with different growth years. Deep learning has a powerful ability in recognition. This study extends it to the identification analysis of medicinal plants from the perspective of spectrum. For the first time, two-dimensional correlation spectroscopy (2DCOS) based on the attenuated total reflection Fourier transformed infrared spectroscopy (ATR-FTIR) combined with residual neural network (Resnet) was used to identify growth years. 525 samples were collected, 4725 2DCOS images were drawn, and the dry matter accumulation in rhizomes of different growth years and different sampling sites were briefly analyzed. The results show that the eight-year-old P. polyphylla var. yunnanensis in Dali has higher economic value and medicinal value. The synchronous 2DCOS models based on ATR-FTIR can realize the identification of growth years with accuracy of 100%. Synchronous 2DCOS are more suitable for the identification of medicinal plants with complex systems. 2DCOS images with different colors and second derivative processing cannot optimize the modeling results. In summary, the method we established is innovative and feasible. It not only solved the identification of growth years, expanded the application field of deep learning, but could also be extended to further research on other medicinal plants.
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Affiliation(s)
- JiaQi Yue
- Medicinal Plants Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650200, China; College of Traditional Chinese Medicine, Yunnan University of Chinese Medicine, Kunming 650500, China
| | - ZhiMin Li
- Medicinal Plants Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650200, China
| | - ZhiTian Zuo
- Medicinal Plants Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650200, China
| | - YanLi Zhao
- Medicinal Plants Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650200, China
| | - Ji Zhang
- Medicinal Plants Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650200, China
| | - YuanZhong Wang
- Medicinal Plants Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650200, China.
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20
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Li S, Wang H, Jin L, White JF, Kingsley KL, Gou W, Cui L, Wang F, Wang Z, Wu G. Validation and analysis of the geographical origin of Angelica sinensis (Oliv.) Diels using multi-element and stable isotopes. PeerJ 2021; 9:e11928. [PMID: 34434658 PMCID: PMC8351574 DOI: 10.7717/peerj.11928] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Accepted: 07/17/2021] [Indexed: 11/20/2022] Open
Abstract
Background Place of origin is an important factor when determining the quality and authenticity of Angelica sinensis for medicinal use. It is important to trace the origin and confirm the regional characteristics of medicinal products for sustainable industrial development. Effectively tracing and confirming the material’s origin may be accomplished by detecting stable isotopes and mineral elements. Methods We studied 25 A. sinensis samples collected from three main producing areas (Linxia, Gannan, and Dingxi) in southeastern Gansu Province, China, to better identify its origin. We used inductively coupled plasma mass spectrometry (ICP-MS) and stable isotope ratio mass spectrometry (IRMS) to determine eight mineral elements (K, Mg, Ca, Zn, Cu, Mn, Cr, Al) and three stable isotopes (δ13C, δ15N, δ18O). Principal component analysis (PCA), partial least square discriminant analysis (PLS-DA) and linear discriminant analysis (LDA) were used to verify the validity of its geographical origin. Results K, Ca/Al, δ13C, δ15N and δ18O are important elements to distinguish A. sinensis sampled from Linxia, Gannan and Dingxi. We used an unsupervised PCA model to determine the dimensionality reduction of mineral elements and stable isotopes, which could distinguish the A. sinensis from Linxia. However, it could not easily distinguish A. sinensis sampled from Gannan and Dingxi. The supervised PLS-DA and LDA models could effectively distinguish samples taken from all three regions and perform cross-validation. The cross-validation accuracy of PLS-DA using mineral elements and stable isotopes was 84%, which was higher than LDA using mineral elements and stable isotopes. Conclusions The PLS-DA and LDA models provide a theoretical basis for tracing the origin of A. sinensis in three regions (Linxia, Gannan and Dingxi). This is significant for protecting consumers’ health, rights and interests.
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Affiliation(s)
- Shanjia Li
- School of Life Science and Engineering, Lanzhou University of Technology, Lanzhou, Gansu, China.,Key Laboratory of Land Surface Process and Climate Change in Cold and Arid Regions, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, Gansu, China
| | - Hui Wang
- School of Life Science and Engineering, Lanzhou University of Technology, Lanzhou, Gansu, China
| | - Ling Jin
- College of Pharmacy, Gansu University of Chinese Medicine, Lanzhou, Gansu, China
| | - James F White
- Department of Plant Biology, Rutgers University, New Brunswick, United States of America
| | - Kathryn L Kingsley
- Department of Plant Biology, Rutgers University, New Brunswick, United States of America
| | - Wei Gou
- School of Life Science and Engineering, Lanzhou University of Technology, Lanzhou, Gansu, China
| | - Lijuan Cui
- School of Life Science and Engineering, Lanzhou University of Technology, Lanzhou, Gansu, China
| | - Fuxiang Wang
- School of Life Science and Engineering, Lanzhou University of Technology, Lanzhou, Gansu, China
| | - Zihao Wang
- School of Life Science and Engineering, Lanzhou University of Technology, Lanzhou, Gansu, China
| | - Guoqiang Wu
- School of Life Science and Engineering, Lanzhou University of Technology, Lanzhou, Gansu, China
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21
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Wang L, Li J, Li T, Liu H, Wang Y. Method Superior to Traditional Spectral Identification: FT-NIR Two-Dimensional Correlation Spectroscopy Combined with Deep Learning to Identify the Shelf Life of Fresh Phlebopus portentosus. ACS OMEGA 2021; 6:19665-19674. [PMID: 34368554 PMCID: PMC8340397 DOI: 10.1021/acsomega.1c02317] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Accepted: 07/09/2021] [Indexed: 05/07/2023]
Abstract
The taste of fresh mushrooms is always appealing. Phlebopus portentosus is the only porcini that can be cultivated artificially in the world, with a daily output of up to 2 tons and a large sales market. Fresh mushrooms are very susceptible to microbial attacks when stored at 0-2 °C for more than 5 days. Therefore, the freshness of P. portentosus must be evaluated during its refrigeration to ensure food safety. According to their freshness, the samples were divided into three categories, namely, category I (1-2 days, 0-48 h, recommended for consumption), category II (3-4 days, 48-96 h, recommended for consumption), and category III (5-6 days, 96-144 h, not recommended). In our study, a fast and reliable shelf life identification method was established through Fourier transform near-infrared (FT-NIR) spectroscopy combined with a machine learning method. Deep learning (DL) is a new focus in the field of food research, so we established a deep learning classification model, traditional support-vector machine (SVM), partial least-squares discriminant analysis (PLS-DA), and an extreme learning machine (ELM) model to identify the shelf life of P. portentosus. The results showed that FT-NIR two-dimensional correlation spectroscopy (2DCOS) combined with the deep learning model was more suitable for the identification of fresh mushroom shelf life and the model had the best robustness. In conclusion, FT-NIR combined with machine learning had the advantages of being nondestructive, fast, and highly accurate in identifying the shelf life of P. portentosus. This method may become a promising rapid analysis tool, which can quickly identify the shelf life of fresh edible mushrooms.
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Affiliation(s)
- Li Wang
- College
of Agronomy and Biotechnology, Yunnan Agricultural
University, Kunming 650201, China
| | - Jieqing Li
- College
of Resources and Environment, Yunnan Agricultural
University, Kunming 650201, China
| | - Tao Li
- College
of Resources and Environment, Yuxi Normal
University, Yuxi 653199, China
| | - Honggao Liu
- College
of Agronomy and Life Sciences, Zhaotong
University, Zhaotong 657000, China
| | - Yuanzhong Wang
- Medicinal
Plants Research Institute, Yunnan Academy
of Agricultural Sciences, Kunming 650200, China
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22
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Saif FA, Yaseen SA, Alameen AS, Mane SB, Undre PB. Identification and characterization of Aspergillus species of fruit rot fungi using microscopy, FT-IR, Raman and UV-Vis spectroscopy. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 246:119010. [PMID: 33035886 DOI: 10.1016/j.saa.2020.119010] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2020] [Revised: 09/19/2020] [Accepted: 09/23/2020] [Indexed: 05/11/2023]
Abstract
During the investigation of fungal isolation from fruit, the major genera were Aspergillus, Penicillium, cladosporium, Alternaria, fusarium, Colletotrichum were found. Among them Aspergillus (15 species) was found major dominant on different fruits. Fifteen different Aspergillus species viz. Aspergillus brasiliensis, Aspergillus phoenicis, Aspergillus carbonarius, four Aspergillus flavus, Aspergillus acidus, two Aspergillus awamori, Aspergillus aculeatus, Aspergillus eucalypticola, Aspergillus oryzae and two Aspergillus Spp. have been differentiate and identify using morphology (microscopic technique), Fourier Transforms Infrared spectroscopy (FTIR), Raman Spectroscopy (RS) and UV-visible spectrophotometry (UV-vis). The fungal mass in powder form was used in present study. In FTIR the finger print region is important for the characterization of Aspergillus because this region is unique and contains peaks indicating the presence of DNA. From the results were found Fourier transform infrared (FTIR) technique and Raman spectroscopy a useful tool, sensitive, fast, economical, accurate, not require sample preparation and successfully used to identify fungi.
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Affiliation(s)
- F A Saif
- Microwave Research Laboratory, Department of Physics, Dr. Babasaheb Ambedkar Marathwada University, Aurangabad, Maharashtra 431004, India
| | - S A Yaseen
- Microwave Research Laboratory, Department of Physics, Dr. Babasaheb Ambedkar Marathwada University, Aurangabad, Maharashtra 431004, India
| | - A S Alameen
- Microwave Research Laboratory, Department of Physics, Dr. Babasaheb Ambedkar Marathwada University, Aurangabad, Maharashtra 431004, India
| | - S B Mane
- Microbical Cultural Laboratory, Department of Botany, Dr. Babasaheb Ambedkar Marathwada University, Aurangabad, Maharashtra 431004, India
| | - P B Undre
- Microwave Research Laboratory, Department of Physics, Dr. Babasaheb Ambedkar Marathwada University, Aurangabad, Maharashtra 431004, India.
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23
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Naseer B, Naik HR, Hussain SZ, Qadri T, Beigh MA. Viscothermal Behavior and Structural Characterization of Temperate Highland Himalayan Rice Cultivars. STARCH-STARKE 2020. [DOI: 10.1002/star.202000170] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Bazila Naseer
- Division of Food Science and Technology Sher‐e‐Kashmir University of Agriculture Sciences and Technology of Kashmir Shalimar Srinagar Jammu and Kashmir 190025 India
| | - Haroon Rashid Naik
- Division of Food Science and Technology Sher‐e‐Kashmir University of Agriculture Sciences and Technology of Kashmir Shalimar Srinagar Jammu and Kashmir 190025 India
| | - Syed Zameer Hussain
- Division of Food Science and Technology Sher‐e‐Kashmir University of Agriculture Sciences and Technology of Kashmir Shalimar Srinagar Jammu and Kashmir 190025 India
| | - Tahiya Qadri
- Division of Food Science and Technology Sher‐e‐Kashmir University of Agriculture Sciences and Technology of Kashmir Shalimar Srinagar Jammu and Kashmir 190025 India
| | - Mushtaq Ahmad Beigh
- Division of Food Science and Technology Sher‐e‐Kashmir University of Agriculture Sciences and Technology of Kashmir Shalimar Srinagar Jammu and Kashmir 190025 India
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24
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Authentication and Quality Assessment of Meat Products by Fourier-Transform Infrared (FTIR) Spectroscopy. FOOD ENGINEERING REVIEWS 2020. [DOI: 10.1007/s12393-020-09251-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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25
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Chhetri DR, Chhetri A, Shahi N, Tiwari S, Karna SKL, Lama D, Pokharel YR. Isaria tenuipes Peck, an entomopathogenic fungus from Darjeeling Himalaya: Evaluation of in-vitro antiproliferative and antioxidant potential of its mycelium extract. BMC Complement Med Ther 2020; 20:185. [PMID: 32527241 PMCID: PMC7291650 DOI: 10.1186/s12906-020-02973-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Accepted: 05/26/2020] [Indexed: 11/24/2022] Open
Abstract
BACKGROUND Isaria tenuipes is one of the potent species in the members of the genus Isaria, which is well reported to possess multiple bioactive substances of therapeutic importance. Therefore, an in vitro experimental study was carried to evaluate the bioactivities of the crude methanolic extract from the mycelium of this fungus. METHODS The fungus was authenticated through morphological characters and the species discrepancy was resolved using the nuclear rDNA ITS sequence. The methanolic extract was fingerprinted by FTIR. The antioxidant components in terms of total phenols and flavonoids were determined as gallic acid and quercetin equivalents respectively. Antioxidant activities of the methanolic extract was assessed using 1, 1-diphenyl-2-picrylhydrazyl (DPPH), 2, 2/-azinobis-(3-ethylbenzthiazoline-6-sulphonic acid) radical cation (ABTS0+), Fe2+chelating activity, and hydroxyl radical scavenging assays. Cytotoxicity of the extract was determined by [3-(4, 5-dimethylthiazol-2-yl)-2, 5-diphenyltetrazolium bromide] (MTT) assay on three cancer cell lines: HeLa, HepG2, and PC3. Apoptosis was further studied by propidium iodide (PI) and Annexin-V/PI staining flow cytometric analysis. Anti-proliferation capacity was studied by colony-forming assay. RESULTS In the present study total phenol content of the dried methanol extract was 148.09 ± 3.51μg gallic acid equivalent/mg and flavonoid was 9.02±0.95 μg quercetin/mg. The antioxidant activities of methanol-water extract (8:2 v/v) from cultured mycelia of I. tenuipes investigated and evaluated with 1, 1-diphenyl-2-picrylhydrazyl (DPPH) radical scavenging assay revealed IC50 value of 5.04mg/ml with an inhibition rate of 74.77% at 10mg/ml and with an iron-chelating assay the chelating ability was recorded to be 86.76% where the IC50 value was 4.43 mg/ml. In comparison among the antioxidant assays, 2,2/-azinobis-(3-ethylbenzthiazoline-6-sulphonic acid) radical cation (ABTS0+) and hydroxyl assay exhibited radical scavenging rate of 44.42% and 49.82% respectively at a concentration of 10 mg/ml. The IC50 value of the extract in MTT assay was 43.45μg/ml with HeLa cells, 119.33μg/ml with PC3 cells, and 125.55μg/ml with HepG2 cells. CONCLUSION In this study, it can be concluded that the crude methanolic extract exhibited potent antioxidant and antiproliferative activities suggesting natural antioxidative and antiproliferative agents.
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Affiliation(s)
- Dhani Raj Chhetri
- Biochemistry and Molecular Biology Lab, Department of Botany, Sikkim University, Gangtok, Sikkim, 737102, India
| | - Abhijit Chhetri
- Biochemistry and Molecular Biology Lab, Department of Botany, Sikkim University, Gangtok, Sikkim, 737102, India
| | - Nerina Shahi
- Cancer Biology Laboratory, Faculty of Life Science and Biotechnology, South Asian University, Chanakyapuri, New Delhi, 110021, India
| | - Snigdha Tiwari
- National Fungal Culture Collection of India, Biodiversity and Palaeobiology Group, MACS' Agharkar Research Institute, G.G. Agarkar Road, Pune, 411004, India
| | - Shibendra Kumar Lal Karna
- Cancer Biology Laboratory, Faculty of Life Science and Biotechnology, South Asian University, Chanakyapuri, New Delhi, 110021, India
| | - Dorjay Lama
- Department of Microbiology, St. Joseph's College, North Point, Darjeeling, West Bengal, 734104, India
| | - Yuba Raj Pokharel
- Cancer Biology Laboratory, Faculty of Life Science and Biotechnology, South Asian University, Chanakyapuri, New Delhi, 110021, India.
- Centre for Health and Disease Studies Nepal, P.O. Box No. 9503, Sankhmul, Baneshwor, Kathmandu, Nepal.
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26
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Bekiaris G, Tagkouli D, Koutrotsios G, Kalogeropoulos N, Zervakis GI. Pleurotus Mushrooms Content in Glucans and Ergosterol Assessed by ATR-FTIR Spectroscopy and Multivariate Analysis. Foods 2020; 9:foods9040535. [PMID: 32344549 PMCID: PMC7230552 DOI: 10.3390/foods9040535] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Revised: 04/15/2020] [Accepted: 04/19/2020] [Indexed: 02/07/2023] Open
Abstract
Attenuated total reflectance-Fourier transform infrared (ATR-FTIR) spectroscopy was used to monitor the infrared absorption spectra of 79 mushroom samples from 29 Pleurotus ostreatus, P. eryngii and P. nebrodensis strains cultivated on wheat straw, grape marc and/or by-products of the olive industry. The spectroscopic analysis provided a chemical insight into the mushrooms examined, while qualitative and quantitative differences in regions related to proteins, phenolic compounds and polysaccharides were revealed among the species and substrates studied. Moreover, by using advanced chemometrics, correlations of the recorded mushrooms’ spectra versus their content in glucans and ergosterol, commonly determined through traditional analytical techniques, allowed the development of models predicting such contents with a good predictive power (R2: 0.80–0.84) and accuracy (low root mean square error, low relative error and representative to the predicted compounds spectral regions used for the calibrations). Findings indicate that FTIR spectroscopy could be exploited as a potential process analytical technology tool in the mushroom industry to characterize mushrooms and to assess their content in bioactive compounds.
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Affiliation(s)
- Georgios Bekiaris
- Laboratory of General and Agricultural Microbiology, Agricultural University of Athens, 11855 Athens, Greece; (G.B.); (G.K.)
| | - Dimitra Tagkouli
- Department of Nutrition and Dietetics, School of Health Science and Education, Harokopio University of Athens, 17676 Athens, Greece; (D.T.); (N.K.)
| | - Georgios Koutrotsios
- Laboratory of General and Agricultural Microbiology, Agricultural University of Athens, 11855 Athens, Greece; (G.B.); (G.K.)
| | - Nick Kalogeropoulos
- Department of Nutrition and Dietetics, School of Health Science and Education, Harokopio University of Athens, 17676 Athens, Greece; (D.T.); (N.K.)
| | - Georgios I. Zervakis
- Laboratory of General and Agricultural Microbiology, Agricultural University of Athens, 11855 Athens, Greece; (G.B.); (G.K.)
- Correspondence: ; Tel.: +30-210-529-4341
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Shen T, Yu H, Wang YZ. Discrimination of Gentiana and Its Related Species Using IR Spectroscopy Combined with Feature Selection and Stacked Generalization. Molecules 2020; 25:molecules25061442. [PMID: 32210010 PMCID: PMC7144467 DOI: 10.3390/molecules25061442] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2020] [Revised: 03/15/2020] [Accepted: 03/20/2020] [Indexed: 01/09/2023] Open
Abstract
Gentiana, which is one of the largest genera of Gentianoideae, most of which had potential pharmaceutical value, and applied to local traditional medical treatment. Because of the phytochemical diversity and difference of bioactive compounds among species, which makes it crucial to accurately identify authentic Gentiana species. In this paper, the feasibility of using the infrared spectroscopy technique combined with chemometrics analysis to identify Gentiana and its related species was studied. A total of 180 batches of raw spectral fingerprints were obtained from 18 species of Gentiana and Tripterospermum by near-infrared (NIR: 10,000-4000 cm-1) and Fourier transform mid-infrared (MIR: 4000-600 cm-1) spectrum. Firstly, principal component analysis (PCA) was utilized to explore the natural grouping of the 180 samples. Secondly, random forests (RF), support vector machine (SVM), and K-nearest neighbors (KNN) models were built while using full spectra (including 1487 NIR variables and 1214 FT-MIR variables, respectively). The MIR-SVM model had a higher classification accuracy rate than the other models that were based on the results of the calibration sets and prediction sets. The five feature selection strategies, VIP (variable importance in the projection), Boruta, GARF (genetic algorithm combined with random forest), GASVM (genetic algorithm combined with support vector machine), and Venn diagram calculation, were used to reduce the dimensions of the data variable in order to further reduce numbers of variables for modeling. Finally, 101 NIR and 73 FT-MIR bands were selected as the feature variables, respectively. Thirdly, stacking models were built based on the optimal spectral dataset. Most of the stacking models performed better than the full spectra-based models. RF and SVM (as base learners), combined with the SVM meta-classifier, was the optimal stacked generalization strategy. For the SG-Ven-MIR-SVM model, the accuracy (ACC) of the calibration set and validation set were both 100%. Sensitivity (SE), specificity (SP), efficiency (EFF), Matthews correlation coefficient (MCC), and Cohen's kappa coefficient (K) were all 1, which showed that the model had the optimal authenticity identification performance. Those parameters indicated that stacked generalization combined with feature selection is probably an important technique for improving the classification model predictive accuracy and avoid overfitting. The study result can provide a valuable reference for the safety and effectiveness of the clinical application of medicinal Gentiana.
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Affiliation(s)
- Tao Shen
- Yunnan Herbal Laboratory, Institute of Herb Biotic Resources, School of Life and Sciences, Yunnan University, Kunming 650091, China;
- The International Joint Research Center for Sustainable Utilization of Cordyceps Bioresources in China (Yunnan) and Southeast Asia, Yunnan University, Kunming 650091, China
- College of Chemistry, Biological and Environment, Yuxi Normal University, Yu’xi 653100, China
| | - Hong Yu
- Yunnan Herbal Laboratory, Institute of Herb Biotic Resources, School of Life and Sciences, Yunnan University, Kunming 650091, China;
- The International Joint Research Center for Sustainable Utilization of Cordyceps Bioresources in China (Yunnan) and Southeast Asia, Yunnan University, Kunming 650091, China
- Correspondence: ; Tel.: +86-1370-067-6633
| | - Yuan-Zhong Wang
- Medicinal Plants Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650200, China;
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