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Wang H, Zhao Y, Tu J, Liang D, Li M, Wu F. Comparative analysis of differential gene expression reveals novel insights into the heteroblastic foliage functional traits of Pinus massoniana seedlings. Int J Biol Macromol 2024; 264:130762. [PMID: 38471608 DOI: 10.1016/j.ijbiomac.2024.130762] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Revised: 01/17/2024] [Accepted: 03/07/2024] [Indexed: 03/14/2024]
Abstract
Pinus massoniana needles, rich in medicinal polysaccharides and flavonoids, undergo heteroblastic foliage, transitioning from primary needles (PN) to secondary needles (SN) during growth, resulting in altered functional traits. Despite its significance, the molecular regulatory mechanisms governing these traits remain unclear. This study employs Iso-Seq and RNA-Seq analyses to explore differentially expressed genes (DEGs) associated with functional traits throughout the main growth season of heteroblastic foliage. Co-expression network analysis identified 34 hub genes and 17 key transcription factors (TFs) influencing light-harvesting antenna, photosystem I and II, crucial in photosynthesis regulation. Additionally, 14 genes involved in polysaccharide metabolism pathways, synthesizing sucrose, glucose, UDP sugars, and xylan, along with four genes in flavonoid biosynthesis pathways, regulating p-coumaroyl-CoA, quercetin, galangin, and myricetin production, exhibited differential expression between PN and SN. Further analysis unveils a highly interconnected network among these genes, forming a pivotal cascade of TFs and DEGs. Therefore, heteroblastic changes significantly impact needle functional traits, potentially affecting the pharmacological properties of PN and SN. Thus, these genomic insights into understanding the molecular-level differences of heteroblastic foliage, thereby establishing a foundation for advancements in the pharmaceutical industry related to needle-derived products.
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Affiliation(s)
- Haoyun Wang
- Institute for Forest Resources and Environment of Guizhou, Guizhou University, Guiyang 550025, China; Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, Guizhou University, Guiyang 550025, China; College of Forestry, Guizhou University, Guiyang 550025, China
| | - Yuanxiang Zhao
- College of Forestry, Guizhou University, Guiyang 550025, China
| | - Jingjing Tu
- College of Forestry, Guizhou University, Guiyang 550025, China
| | - Daqu Liang
- College of Forestry, Guizhou University, Guiyang 550025, China
| | - Min Li
- College of Forestry, Guizhou University, Guiyang 550025, China
| | - Feng Wu
- Institute for Forest Resources and Environment of Guizhou, Guizhou University, Guiyang 550025, China; Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, Guizhou University, Guiyang 550025, China; College of Forestry, Guizhou University, Guiyang 550025, China.
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Zhao Y, Tu J, Wang H, Xu Y, Wu F. Transcriptomic and targeted metabolomic unravelling the molecular mechanism of sugar metabolism regulating heteroblastic changes in Pinus massoniana seedlings. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 203:108029. [PMID: 37722284 DOI: 10.1016/j.plaphy.2023.108029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Revised: 09/01/2023] [Accepted: 09/08/2023] [Indexed: 09/20/2023]
Abstract
Pine seedling leaf characteristics show a distinct transition from primary to secondary needles, known as heteroblastic change. However, the underlying regulatory mechanism is poorly understood. The molecular mechanism of sugar metabolism involved in regulating heteroblastic changes in Pinus massoniana seedlings was investigated via transcriptomics and targeted metabolomics. The results identified 12 kinds of sugar metabolites in the foliage. Three types of sugar accumulated at the highest levels: sucrose, glucose and fructose. Compared to seedlings with only primary needles (PN), the contents of these soluble sugars were lower in seedlings with developing secondary needle buds (SNB). RNA-seq analysis highlighted 1086 DEGs between PN and SNB seedlings, revealing significant enrichment in KEGG pathways including starch and sucrose metabolism, plant hormone signal transduction and amino sugar and nucleic acid sugar metabolism. Combined transcriptomic and metabolomic analysis revealed that HK, MDH, and ATPase could potentially enhance sugar availability by stimulating the glycolytic/TCA cycle and oxidative phosphorylation. These processes may lead to a reduced sugar content in the foliage of SNB seedlings. We also identified 72 transcription factors, among which the expression levels of MYB, WRKY, NAC and C2H2 family genes were closely related to those of DEGs in the sugar metabolism pathway. In addition, we identified alternative splicing (AS) events in one NAC gene leading to two isoforms, PmNAC5L and PmNAC5S. PmNAC5L was significantly upregulated, while PmNAC5S was significantly downregulated in SNB seedlings. Overall, our results provide new insights into how sugar metabolism is involved in regulating heteroblastic changes in pine seedlings.
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Affiliation(s)
- Yuanxiang Zhao
- Institute for Forest Resources and Environment of Guizhou, Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, College of Forestry, Guizhou University, Guiyang, 550025, China; College of Forestry, Guizhou University, Guiyang, 550025, China
| | - Jingjing Tu
- Institute for Forest Resources and Environment of Guizhou, Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, College of Forestry, Guizhou University, Guiyang, 550025, China; College of Forestry, Guizhou University, Guiyang, 550025, China
| | - Haoyun Wang
- Institute for Forest Resources and Environment of Guizhou, Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, College of Forestry, Guizhou University, Guiyang, 550025, China; College of Forestry, Guizhou University, Guiyang, 550025, China
| | - Yingying Xu
- Institute for Forest Resources and Environment of Guizhou, Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, College of Forestry, Guizhou University, Guiyang, 550025, China; College of Forestry, Guizhou University, Guiyang, 550025, China
| | - Feng Wu
- Institute for Forest Resources and Environment of Guizhou, Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, College of Forestry, Guizhou University, Guiyang, 550025, China; College of Forestry, Guizhou University, Guiyang, 550025, China.
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Webster C, Figueroa‐Corona L, Méndez‐González ID, Álvarez‐Soto L, Neale DB, Jaramillo‐Correa JP, Wegrzyn JL, Vázquez‐Lobo A. Comparative analysis of differential gene expression indicates divergence in ontogenetic strategies of leaves in two conifer genera. Ecol Evol 2022; 12:e8611. [PMID: 35222971 PMCID: PMC8848466 DOI: 10.1002/ece3.8611] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Revised: 12/21/2021] [Accepted: 01/23/2022] [Indexed: 11/09/2022] Open
Abstract
In land plants, heteroblasty broadly refers to a drastic change in morphology during growth through ontogeny. Juniperus flaccida and Pinus cembroides are conifers of independent lineages known to exhibit leaf heteroblasty between the juvenile and adult life stage of development. Juvenile leaves of P. cembroides develop spirally on the main stem and appear decurrent, flattened, and needle‐like; whereas adult photosynthetic leaves are triangular or semi‐circular needle‐like, and grow in whorls on secondary or tertiary compact dwarf shoots. By comparison, J. flaccida juvenile leaves are decurrent and needle‐like, and adult leaves are compact, short, and scale‐like. Comparative analyses were performed to evaluate differences in anatomy and gene expression patterns between developmental phases in both species. RNA from 12 samples was sequenced and analyzed with available software. They were assembled de novo from the RNA‐Seq reads. Following assembly, 63,741 high‐quality transcripts were functionally annotated in P. cembroides and 69,448 in J. flaccida. Evaluation of the orthologous groups yielded 4140 shared gene families among the four references (adult and juvenile from each species). Activities related to cell division and development were more abundant in juveniles than adults in P. cembroides, and more abundant in adults than juveniles in J. flaccida. Overall, there were 509 up‐regulated and 81 down‐regulated genes in the juvenile condition of P. cembroides and 14 up‐regulated and 22 down‐regulated genes in J. flaccida. Gene interaction network analysis showed evidence of co‐expression and co‐localization of up‐regulated genes involved in cell wall and cuticle formation, development, and phenylpropanoid pathway, in juvenile P. cembroides leaves. Whereas in J. flaccida, differential expression and gene interaction patterns were detected in genes involved in photosynthesis and chloroplast biogenesis. Although J. flaccida and P. cembroides both exhibit leaf heteroblastic development, little overlap was detected, and unique genes and pathways were highlighted in this study.
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Affiliation(s)
- Cynthia Webster
- Department of Ecology and Evolutionary Biology University of Connecticut Storrs Connecticut USA
| | - Laura Figueroa‐Corona
- Departamento de Ecología Evolutiva Instituto de Ecología Universidad Nacional Autónoma de México Ciudad de México Mexico
| | - Iván David Méndez‐González
- Departamento de Ecología Evolutiva Instituto de Ecología Universidad Nacional Autónoma de México Ciudad de México Mexico
- Department of Biological Sciences University of Pittsburgh Pittsburgh Pennsylvania USA
| | - Lluvia Álvarez‐Soto
- Facultad de Ciencias Biológicas Universidad Autónoma del Estado de Morelos Cuernavaca México
| | - David B. Neale
- Department of Plant Sciences University of California Davis California USA
| | - Juan Pablo Jaramillo‐Correa
- Departamento de Ecología Evolutiva Instituto de Ecología Universidad Nacional Autónoma de México Ciudad de México Mexico
| | - Jill L. Wegrzyn
- Department of Ecology and Evolutionary Biology University of Connecticut Storrs Connecticut USA
| | - Alejandra Vázquez‐Lobo
- Centro de Investigación en Biodiversidad y Conservación Universidad Autónoma del Estado de Morelos Cuernavaca México
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Wang H, Wu F, Li M, Zhu X, Shi C, Shao C, Ding G. Structure and chlorophyll fluorescence of heteroblastic foliage affect first-year growth in Pinus massoniana Lamb. seedlings. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 170:206-217. [PMID: 34906903 DOI: 10.1016/j.plaphy.2021.12.006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2021] [Revised: 11/22/2021] [Accepted: 12/07/2021] [Indexed: 06/14/2023]
Abstract
Pine seedlings exhibit heteroblastic foliage (primary and secondary needles) during seedling development. However, few trials have studied how heteroblastic foliage influences pine seedling growth by seasonal variation. This study first investigated the anatomical differences between the primary and secondary needles of one-year-old Pinus massoniana seedlings. We measured chlorophyll fluorescence (ChlF) and evaluated the photoprotective mechanisms and light energy partitioning of these heteroblastic leaves from September to November. The results showed that the primary needles, as juvenile foliage, had a greater fraction of mesophyll tissue and stomata. In addition, the primary needles had two vascular bundles, and shorter distance from xylem and phloem to mesophyll cells, exhibiting a luxury growth strategy of rapidly obtaining high returns. The ChlF parameters indicated that the primary needles maintained a relatively high level of photoprotection by thermal dissipation (nonphotochemical quenching (NPQ)) and nonregulated energy dissipation (Y(NO)). The secondary needles, representing mature foliage, had greater area of xylem and phloem tissues. The contents of Chl b and carotenoids (Car) significantly increased in November, promoting φPo and photoprotection, which suggested that the secondary needles were more resistant to low temperatures. During the whole light response process of secondary needles, the increases in the electron transfer rate (ETR) and light energy utilization efficiency (α) helped to increase the actual photosynthetic quantum yield (Y(II)) by reducing energy dissipation by decreasing the proportion of regulated energy dissipation (Y(NPQ)) and Y(NO). Given the sensitivity of this heteroblastic foliage to environmental changes, the practical use and extension of P. massoniana for afforestation purposes should be carried out with caution.
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Affiliation(s)
- Haoyun Wang
- Institute for Forest Resources and Environment of Guizhou, Guizhou University, Guiyang, 550025, China; Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, Guizhou University, Guiyang, 550025, China; College of Forestry, Guizhou University, Guiyang, 550025, China
| | - Feng Wu
- Institute for Forest Resources and Environment of Guizhou, Guizhou University, Guiyang, 550025, China; Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, Guizhou University, Guiyang, 550025, China; College of Forestry, Guizhou University, Guiyang, 550025, China.
| | - Min Li
- College of Forestry, Guizhou University, Guiyang, 550025, China
| | - Xiaokun Zhu
- College of Forestry, Guizhou University, Guiyang, 550025, China
| | - Changshuang Shi
- College of Forestry, Guizhou University, Guiyang, 550025, China
| | - Changchang Shao
- College of Forestry, Guizhou University, Guiyang, 550025, China
| | - Guijie Ding
- Institute for Forest Resources and Environment of Guizhou, Guizhou University, Guiyang, 550025, China; Key Laboratory of Forest Cultivation in Plateau Mountain of Guizhou Province, Guizhou University, Guiyang, 550025, China; College of Forestry, Guizhou University, Guiyang, 550025, China.
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Zhang JL, Li XG, Xu XH, Chen HP, Li YL, Guy RD. Leaf morphology, photosynthesis and pigments change with age and light regime in savin juniper. PLANT BIOLOGY (STUTTGART, GERMANY) 2021; 23:1097-1108. [PMID: 33756015 DOI: 10.1111/plb.13256] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Accepted: 03/10/2021] [Indexed: 06/12/2023]
Abstract
Savin juniper is an excellent species for desertification control in arid and semi-arid areas, where it typically establishes under the protection of nurse plants. Ultimately, established plants emerge into full light as they grow, and this transition is accompanied by an increase in the preponderance of scale-like versus needle-like leaf forms. To test how age and variable light environments affect shade tolerance in savin juniper, we established a pot study under field conditions, with two age cohorts (1- and 4-year-old rooted scions) and three light regimes (10%, 50% and 100% light transmittance). We measured growth, leaf parameters, photosynthesis, chlorophyll fluorescence and foliar pigments on a monthly basis (seven growing months per year, from 2015 to 2017). Overall, there was little interaction among all variables, and both cohort and light regime had significant effects. Leaf form and spacing varied continuously, tending towards shorter, more closely spaced and more appressed scale leaves with higher dry leaf mass per area in older plants or under higher light. There were no clear age-related patterns in carotenoids but both cohort and light had significant effects on gas exchange and chlorophyll fluorescence variables. We conclude that savin juniper shows an intermediate tolerance to shade that changes with growth in that younger plants were less tolerant of full sun than older plants, consistent with its reliance on nurse plants for ultimate establishment in the open.
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Affiliation(s)
- J-L Zhang
- College of Forestry, Hebei Agricultural University, Baoding, China
- Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Vancouver, Canada
| | - X-G Li
- College of Forestry, Hebei Agricultural University, Baoding, China
| | - X-H Xu
- College of Forestry, Hebei Agricultural University, Baoding, China
| | - H-P Chen
- College of Forestry, Hebei Agricultural University, Baoding, China
| | - Y-L Li
- College of Forestry, Hebei Agricultural University, Baoding, China
| | - R D Guy
- Department of Forest and Conservation Sciences, Faculty of Forestry, University of British Columbia, Vancouver, Canada
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Ehmig M, Coiro M, Linder HP. Ecophysiological strategy switch through development in heteroblastic species of mediterranean ecosystems - an example in the African Restionaceae. ANNALS OF BOTANY 2019; 123:611-623. [PMID: 30475945 PMCID: PMC6417474 DOI: 10.1093/aob/mcy194] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2018] [Accepted: 10/19/2018] [Indexed: 06/09/2023]
Abstract
BACKGROUND AND AIMS Heteroblasty is a non-reversible morphological change associated with life stage change and has been linked to predictable environmental variation. It is present in several clades from mediterranean-type climates, such as African Restionaceae (restios). These have heteroblastic shoots: juvenile shoots are thin, branched and sterile (sterile shoots); adult shoots are thicker and less branched, and bear inflorescences (reproductive shoots). Ten per cent of the restios retain juvenile-like, sterile shoots as adults (neoteny). We hypothesize (1) that the two shoot types differ in ecophysiological attributes, and (2) that these shoot types (and the neoteny) are associated with different environments. METHODS We measured shoot mass per surface area (SMA), maximum photosynthetic capacity per biomass (Amass) and chlorenchyma to ground tissue ratio (CGR) of both shoot types in 14 restio species. We also calculated environmental niche overlap between neotenous and non-neotenous species using an improved multidimensional overlap function based on occurrence data, and linked shoot types with environments using a phylogenetic generalized linear model. KEY RESULTS Sterile shoots showed higher Amass, lower SMA and higher CGR than reproductive shoots. Neotenous and non-neotenous species overlapped ecologically less than expected by chance: neotenous species favoured more mesic, non-seasonal conditions. CONCLUSIONS We associate sterile shoot morphology with acquisitive ecophysiological strategies and reproductive shoots with conservative strategies. The heteroblastic switch optimizes carbon efficiency in the juvenile phase (by sterile shoots) in the mesic post-fire conditions. The adult shoots present a compromise between a more conservative strategy favourable under harsher conditions and reproductive success. Heteroblasty in seasonally arid, oligotrophic ecosystems with predictable, fire-driven shifts in water and nutrient availability might play a role in the success of restios and other species-rich lineages in mediterranean-type ecosystems. It may represent a previously unrecognized adaptation in mediterranean clades sharing similar conditions, contributing to their ecological and taxonomic dominance.
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Affiliation(s)
- Merten Ehmig
- Department of Systematic and Evolutionary Botany, University of Zurich, Zurich, Switzerland
| | - Mario Coiro
- Department of Systematic and Evolutionary Botany, University of Zurich, Zurich, Switzerland
| | - H Peter Linder
- Department of Systematic and Evolutionary Botany, University of Zurich, Zurich, Switzerland
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Costa e Silva J, Harrison PA, Wiltshire R, Potts BM. Evidence that divergent selection shapes a developmental cline in a forest tree species complex. ANNALS OF BOTANY 2018; 122:181-194. [PMID: 29788049 PMCID: PMC6025196 DOI: 10.1093/aob/mcy064] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2017] [Accepted: 04/16/2018] [Indexed: 06/01/2023]
Abstract
BACKGROUND AND AIMS Evolutionary change in developmental trajectories (heterochrony) is a major mechanism of adaptation in plants and animals. However, there are few detailed studies of the variation in the timing of developmental events among wild populations. We here aimed to identify the climatic drivers and measure selection shaping a genetic-based developmental cline among populations of an endemic tree species complex on the island of Tasmania. METHODS Seed lots from 38 native provenances encompassing the clinal transition from the heteroblastic Eucalyptus tenuiramis to the homoblastic Eucalyptus risdonii were grown in a common-garden field trial in southern Tasmania for 20 years. We used 27 climatic variables to model the provenance variation in vegetative juvenility as assessed at age 5 years. A phenotypic selection analysis was used to measure the fitness consequences of variation in vegetative juvenility based on its impact on the survival and reproductive capacity of survivors at age 20 years. KEY RESULTS Significant provenance divergence in vegetative juvenility was shown to be associated with home-site aridity, with the retention of juvenile foliage increasing with increasing aridity. Our results indicated that climate change may lead to different directions of selection across the geographic range of the complex, and in our mesic field site demonstrated that total directional selection within phenotypically variable provenances was in favour of reduced vegetative juvenility. CONCLUSIONS We provide evidence that heteroblasty is adaptive and argue that, in assessing the impacts of rapid global change, developmental plasticity and heterochrony are underappreciated processes which can contribute to populations of long-lived organisms, such as trees, persisting and ultimately adapting to environmental change.
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Affiliation(s)
- João Costa e Silva
- Centro de Estudos Florestais, Instituto Superior de Agronomia, Universidade de Lisboa, Tapada da Ajuda, Lisboa, Portugal
| | - Peter A Harrison
- School of Natural Sciences and ARC Training Centre for Forest Value, University of Tasmania, Hobart, Tasmania, Australia
| | - Robert Wiltshire
- School of Natural Sciences and ARC Training Centre for Forest Value, University of Tasmania, Hobart, Tasmania, Australia
| | - Brad M Potts
- School of Natural Sciences and ARC Training Centre for Forest Value, University of Tasmania, Hobart, Tasmania, Australia
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Kuusk V, Niinemets Ü, Valladares F. A major trade-off between structural and photosynthetic investments operative across plant and needle ages in three Mediterranean pines. TREE PHYSIOLOGY 2018; 38:543-557. [PMID: 29281105 DOI: 10.1093/treephys/tpx139] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2017] [Accepted: 10/03/2017] [Indexed: 06/07/2023]
Abstract
Pine (Pinus) species exhibit extensive variation in needle shape and size between juvenile (primary) and adult (secondary) needles (heteroblasty), but few studies have quantified the changes in needle morphological, anatomical and chemical traits upon juvenile-to-adult transition. Mediterranean pines keep juvenile needles longer than most other pines, implying that juvenile needles play a particularly significant role in seedling and sapling establishment in this environment. We studied needle anatomical, morphological and chemical characteristics in juvenile and different-aged adult needles in Mediterranean pines Pinus halepensis Mill., Pinus pinea L. and Pinus nigra J. F. Arnold subsp. salzmannii (Dunal) Franco hypothesizing that needle anatomical modifications upon juvenile-to-adult transition lead to a trade-off between investments in support and photosynthetic tissues, and that analogous changes occur with needle aging albeit to a lower degree. Compared with adult needles, juvenile needles of all species were narrower with 1.6- to 2.4-fold lower leaf dry mass per unit area, and had ~1.4-fold thinner cell walls, but needle nitrogen content per dry mass was similar among plant ages. Juvenile needles also had ~1.5-fold greater mesophyll volume fraction, ~3-fold greater chloroplast volume fraction and ~1.7-fold greater chloroplast exposed to mesophyll exposed surface area ratio, suggesting overall greater photosynthetic activity. Changes in needle traits were similar in aging adult needles, but the magnitude was generally less than the changes upon juvenile to adult transition. In adult needles, the fraction in support tissues scaled positively with known ranking of species tolerance of drought (P. halepensis > P. pinea > P. nigra). Across all species, and needle and plant ages, a negative correlation between volume fractions of mesophyll and structural tissues was observed, manifesting a trade-off between biomass investments in different needle functions. These results demonstrate that within the broad trade-off, juvenile and adult needle morphophysiotypes are separated by varying investments in support and photosynthetic functions. We suggest that the ecological advantage of the juvenile morphophysiotype is maximization of carbon gain of establishing saplings, while adult needle physiognomy enhances environmental stress tolerance of established plants.
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Affiliation(s)
- Vivian Kuusk
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 1 Tartu 51014, Estonia
| | - Ülo Niinemets
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 1 Tartu 51014, Estonia
- Estonian Academy of Sciences, Kohtu 6, 10130 Tallinn, Estonia
| | - Fernando Valladares
- LINCGlobal, Departamento de Biogeografía y Cambio Global, Museo Nacional de Ciencias Naturales, MNCN-CSIC, Serrano 115 dpdo, 28006 Madrid, Spain
- Departamento de Biología y Geología, ESCET, Universidad Rey Juan Carlos, Tulipán s/n, 28933 Móstoles, Spain
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López R, Cano FJ, Choat B, Cochard H, Gil L. Plasticity in Vulnerability to Cavitation of Pinus canariensis Occurs Only at the Driest End of an Aridity Gradient. FRONTIERS IN PLANT SCIENCE 2016; 7:769. [PMID: 27375637 PMCID: PMC4891331 DOI: 10.3389/fpls.2016.00769] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2016] [Accepted: 05/17/2016] [Indexed: 05/17/2023]
Abstract
Water availability has been considered one of the crucial drivers of species distribution. However, the increasing of temperatures and more frequent water shortages could overcome the ability of long-lived species to cope with rapidly changing conditions. Growth and survival of natural populations adapted to a given site, transferred and tested in other environments as part of provenance trials, can be interpreted as a simulation of ambient changes at the original location. We compare the intraspecific variation and the relative contribution of plasticity to adaptation of key functional traits related to drought resistance: vulnerability to cavitation, efficiency of the xylem to conduct water and biomass allocation. We use six populations of Canary Island pine growing in three provenance trials (wet, dry, and xeric). We found that the variability for hydraulic traits was largely due to phenotypic plasticity, whereas, genetic variation was limited and almost restricted to hydraulic safety traits and survival. Trees responded to an increase in climate dryness by lowering growth, and increasing leaf-specific hydraulic conductivity by means of increasing the Huber value. Vulnerability to cavitation only showed a plastic response in the driest provenance trial located in the ecological limit of the species. This trait was more tightly correlated with annual precipitation, drought length, and temperature oscillation at the origin of the populations than hydraulic efficiency or the Huber value. Vulnerability to cavitation was directly related to survival in the dry and the xeric provenance trials, illustrating its importance in determining drought resistance. In a new climatic scenario where more frequent and intense droughts are predicted, the magnitude of extreme events together with the fact that plasticity of cavitation resistance is only shown in the very dry limit of the species could hamper the capacity to adapt and buffer against environmental changes of some populations growing in dry locations.
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Affiliation(s)
- Rosana López
- Forest Genetics and Physiology Research Group, Sistemas y Recursos Naturales, School of Forest Engineering, Technical University of MadridMadrid, Spain
| | - Francisco J. Cano
- Forest Genetics and Physiology Research Group, Sistemas y Recursos Naturales, School of Forest Engineering, Technical University of MadridMadrid, Spain
| | - Brendan Choat
- Hawkesbury Institute for the Environment, University of Western SydneyRichmond, NSW, Australia
| | - Hervé Cochard
- PIAF, INRA, Université Clermont AuvergneClermont-Ferrand, France
| | - Luis Gil
- Forest Genetics and Physiology Research Group, Sistemas y Recursos Naturales, School of Forest Engineering, Technical University of MadridMadrid, Spain
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Minelli A. Species diversity vs. morphological disparity in the light of evolutionary developmental biology. ANNALS OF BOTANY 2016; 117:781-94. [PMID: 26346718 PMCID: PMC4845798 DOI: 10.1093/aob/mcv134] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2015] [Revised: 05/14/2015] [Accepted: 07/01/2015] [Indexed: 05/21/2023]
Abstract
BACKGROUND Two indicators of a clade's success are its diversity (number of included species) and its disparity (extent of morphospace occupied by its members). Many large genera show high diversity with low disparity, while others such as Euphorbia and Drosophila are highly diverse but also exhibit high disparity. The largest genera are often characterized by key innovations that often, but not necessarily, coincide with their diagnostic apomorphies. In terms of their contribution to speciation, apomorphies are either permissive (e.g. flightlessness) or generative (e.g. nectariferous spurs). SCOPE Except for Drosophila, virtually no genus among those with the highest diversity or disparity includes species currently studied as model species in developmental genetics or evolutionary developmental biology (evo-devo). An evo-devo approach is, however, potentially important to understand how diversity and disparity could rapidly increase in the largest genera currently accepted by taxonomists. The most promising directions for future research and a set of key questions to be addressed are presented in this review. CONCLUSIONS From an evo-devo perspective, the evolution of clades with high diversity and/or disparity can be addressed from three main perspectives: (1) evolvability, in terms of release from previous constraints and of the presence of genetic or developmental conditions favouring multiple parallel occurrences of a given evolutionary transition and its reversal; (2) phenotypic plasticity as a facilitator of speciation; and (3) modularity, heterochrony and a coupling between the complexity of the life cycle and the evolution of diversity and disparity in a clade. This simple preliminary analysis suggests a set of topics that deserve priority for scrutiny, including the possible role of saltational evolution in the origination of high diversity and/or disparity, the predictability of morphological evolution following release from a former constraint, and the extent and the possible causes of a positive correlation between diversity and disparity and the complexity of the life cycle.
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Alía R, Chambel R, Notivol E, Climent J, González-Martínez SC. Environment-dependent microevolution in a Mediterranean pine (Pinus pinaster Aiton). BMC Evol Biol 2014; 14:200. [PMID: 25245540 PMCID: PMC4177426 DOI: 10.1186/s12862-014-0200-5] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2014] [Accepted: 09/08/2014] [Indexed: 11/17/2022] Open
Abstract
Background A central question for understanding the evolutionary responses of plant species to rapidly changing environments is the assessment of their potential for short-term (in one or a few generations) genetic change. In our study, we consider the case of Pinus pinaster Aiton (maritime pine), a widespread Mediterranean tree, and (i) test, under different experimental conditions (growth chamber and semi-natural), whether higher recruitment in the wild from the most successful mothers is due to better performance of their offspring; and (ii) evaluate genetic change in quantitative traits across generations at two different life stages (mature trees and seedlings) that are known to be under strong selection pressure in forest trees. Results Genetic control was high for most traits (h2 = 0.137-0.876) under the milder conditions of the growth chamber, but only for ontogenetic change (0.276), total height (0.415) and survival (0.719) under the more stressful semi-natural conditions. Significant phenotypic selection gradients were found in mature trees for traits related to seed quality (germination rate and number of empty seeds). Moreover, female relative reproductive success was significantly correlated with offspring performance for specific leaf area (SLA) in the growth chamber experiment, and stem mass fraction (SMF) in the experiment under semi-natural conditions, two adaptive traits related to abiotic stress-response in pines. Selection gradients based on genetic covariance of seedling traits and responses to selection at this stage involved traits related to biomass allocation (SMF) and growth (as decomposed by a Gompertz model) or delayed ontogenetic change, depending also on the testing environment. Conclusions Despite the evidence of microevolutionary change in adaptive traits in maritime pine, directional or disruptive changes are difficult to predict due to variable selection at different life stages and environments. At mature-tree stages, higher female effective reproductive success can be explained by differences in their production of offspring (due to seed quality) and, to a lesser extent, by seemingly better adapted seedlings. Selection gradients and responses to selection for seedlings also differed across experimental conditions. The distinct processes involved at the two life stages (mature trees or seedlings) together with environment-specific responses advice caution when predicting likely evolutionary responses to environmental change in Mediterranean forest trees. Electronic supplementary material The online version of this article (doi:10.1186/s12862-014-0200-5) contains supplementary material, which is available to authorized users.
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Affiliation(s)
| | | | | | | | - Santiago C González-Martínez
- Department of Forest Ecology and Genetics, INIA-Forest Research Centre (CIFOR), Avda, A Coruña km 7,5, Madrid, Spain.
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Abstract
A change in the timing or rate of developmental events throughout ontogeny is referred to as heterochrony, and it is a major evolutionary process in plants and animals. We investigated the genetic basis for natural variation in the timing of vegetative phase change in the tree Eucalyptus globulus, which undergoes a dramatic change in vegetative morphology during the juvenile-to-adult transition. Quantitative trait loci analysis in an outcross F2 family derived from crosses between individuals from a coastal population of E. globulus with precocious vegetative phase change and individuals from populations in which vegetative phase change occurs several years later implicated the microRNA EglMIR156.5 as a potential contributor to this heterochronic difference. Additional evidence for the involvement of EglMIR156.5 was provided by its differential expression in trees with early and late phase change. Our findings suggest that changes in the expression of miR156 underlie natural variation in vegetative phase change in E. globulus, and may also explain interspecific differences in the timing of this developmental transition.
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López de Heredia U, López R, Collada C, Emerson BC, Gil L. Signatures of volcanism and aridity in the evolution of an insular pine (Pinus canariensis Chr. Sm. Ex DC in Buch). Heredity (Edinb) 2014; 113:240-9. [PMID: 24619181 DOI: 10.1038/hdy.2014.22] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2013] [Revised: 01/21/2014] [Accepted: 02/07/2014] [Indexed: 01/15/2023] Open
Abstract
Oceanic islands of volcanic origin provide useful templates for the study of evolution because they are subjected to recurrent perturbations that generate steep environmental gradients that may promote adaptation. Here we combine population genetic data from nuclear genes with the analysis of environmental variation and phenotypic data from common gardens to disentangle the confounding effects of demography and selection to identify the factors of importance for the evolution of the insular pine P. canariensis. Eight nuclear genes were partially sequenced in a survey covering the entire species range, and phenotypic traits were measured in four common gardens from contrasting environments. The explanatory power of population substrate age and environmental indices were assessed against molecular and phenotypic diversity estimates. In addition, neutral genetic variability (FST) and the genetic differentiation of phenotypic variation (QST) were compared in order to identify the evolutionary forces acting on these traits. Two key factors in the evolution of the species were identified: (1) recurrent volcanic activity has left an imprint in the genetic diversity of the nuclear genes; (2) aridity in southern slopes promotes local adaptation in the driest localities of P. canariensis, despite high levels of gene flow among populations.
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Affiliation(s)
- U López de Heredia
- Forest Genetics and Physiology Research Group, Technical University of Madrid (UPM), Ciudad Universitaria s/n, Madrid, Spain
| | - R López
- Forest Genetics and Physiology Research Group, Technical University of Madrid (UPM), Ciudad Universitaria s/n, Madrid, Spain
| | - C Collada
- Forest Genetics and Physiology Research Group, Technical University of Madrid (UPM), Ciudad Universitaria s/n, Madrid, Spain
| | - B C Emerson
- Island Ecology and Evolution Research Group, IPNA-CSIC, Tenerife, Canary Islands, Spain
| | - L Gil
- Forest Genetics and Physiology Research Group, Technical University of Madrid (UPM), Ciudad Universitaria s/n, Madrid, Spain
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López R, López de Heredia U, Collada C, Cano FJ, Emerson BC, Cochard H, Gil L. Vulnerability to cavitation, hydraulic efficiency, growth and survival in an insular pine (Pinus canariensis). ANNALS OF BOTANY 2013; 111:1167-79. [PMID: 23644361 PMCID: PMC3662524 DOI: 10.1093/aob/mct084] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2013] [Accepted: 02/26/2013] [Indexed: 05/04/2023]
Abstract
BACKGROUND AND AIMS It is widely accepted that hydraulic failure due to xylem embolism is a key factor contributing to drought-induced mortality in trees. In the present study, an attempt is made to disentangle phenotypic plasticity from genetic variation in hydraulic traits across the entire distribution area of a tree species to detect adaptation to local environments. METHODS A series of traits related to hydraulics (vulnerability to cavitation and hydraulic conductivity in branches), growth performance and leaf mass per area were assessed in eight Pinus canariensis populations growing in two common gardens under contrasting environments. In addition, the neutral genetic variability (FST) and the genetic differentiation of phenotypic variation (QST) were compared in order to identify the evolutionary forces acting on these traits. KEY RESULTS The variability for hydraulic traits was largely due to phenotypic plasticity. Nevertheless, the vulnerability to cavitation displayed a significant genetic variability (approx. 5 % of the explained variation), and a significant genetic × environment interaction (between 5 and 19 % of the explained variation). The strong correlation between vulnerability to cavitation and survival in the xeric common garden (r = -0·81; P < 0·05) suggests a role for the former in the adaptation to xeric environments. Populations from drier sites and higher temperature seasonality were less vulnerable to cavitation than those growing at mesic sites. No trade-off between xylem safety and efficiency was detected. QST of parameters of the vulnerability curve (0·365 for P50 and the slope of the vulnerability curve and 0·452 for P88) differed substantially from FST (0·091), indicating divergent selection. In contrast, genetic drift alone was found to be sufficient to explain patterns of differentiation for xylem efficiency and growth. CONCLUSIONS The ability of P. canariensis to inhabit a wide range of ecosystems seemed to be associated with high phenotypic plasticity and some degree of local adaptations of xylem and leaf traits. Resistance to cavitation conferred adaptive potential for this species to adapt successfully to xeric conditions.
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Affiliation(s)
- Rosana López
- Forest Genetics and Physiology Research Group, E.T.S. Forestry Engineering, Technical University of Madrid (UPM), Ciudad Universitaria s/n, 28040 Madrid, Spain
| | - Unai López de Heredia
- Forest Genetics and Physiology Research Group, E.T.S. Forestry Engineering, Technical University of Madrid (UPM), Ciudad Universitaria s/n, 28040 Madrid, Spain
| | - Carmen Collada
- Forest Genetics and Physiology Research Group, E.T.S. Forestry Engineering, Technical University of Madrid (UPM), Ciudad Universitaria s/n, 28040 Madrid, Spain
| | - Francisco Javier Cano
- Forest Genetics and Physiology Research Group, E.T.S. Forestry Engineering, Technical University of Madrid (UPM), Ciudad Universitaria s/n, 28040 Madrid, Spain
| | - Brent C. Emerson
- Island Ecology and Evolution Research Group, IPNA-CSIC, C/ Astrofísico Francisco Sánchez 3, 38206 La Laguna, Tenerife, Canary Islands, Spain
| | - Hervé Cochard
- INRA, UMR 547 PIAF, F-63100 Clermont-Ferrand, France
- Université Blaise Pascal, UMR 547 PIAF, F-63177, Aubière, France
| | - Luis Gil
- Forest Genetics and Physiology Research Group, E.T.S. Forestry Engineering, Technical University of Madrid (UPM), Ciudad Universitaria s/n, 28040 Madrid, Spain
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Nicotra AB, Leigh A, Boyce CK, Jones CS, Niklas KJ, Royer DL, Tsukaya H. The evolution and functional significance of leaf shape in the angiosperms. FUNCTIONAL PLANT BIOLOGY : FPB 2011; 38:535-552. [PMID: 32480907 DOI: 10.1071/fp11057] [Citation(s) in RCA: 203] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2011] [Accepted: 05/30/2011] [Indexed: 05/18/2023]
Abstract
Angiosperm leaves manifest a remarkable diversity of shapes that range from developmental sequences within a shoot and within crown response to microenvironment to variation among species within and between communities and among orders or families. It is generally assumed that because photosynthetic leaves are critical to plant growth and survival, variation in their shape reflects natural selection operating on function. Several non-mutually exclusive theories have been proposed to explain leaf shape diversity. These include: thermoregulation of leaves especially in arid and hot environments, hydraulic constraints, patterns of leaf expansion in deciduous species, biomechanical constraints, adaptations to avoid herbivory, adaptations to optimise light interception and even that leaf shape variation is a response to selection on flower form. However, the relative importance, or likelihood, of each of these factors is unclear. Here we review the evolutionary context of leaf shape diversification, discuss the proximal mechanisms that generate the diversity in extant systems, and consider the evidence for each the above hypotheses in the context of the functional significance of leaf shape. The synthesis of these broad ranging areas helps to identify points of conceptual convergence for ongoing discussion and integrated directions for future research.
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Affiliation(s)
- Adrienne B Nicotra
- Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia
| | - Andrea Leigh
- School of the Environment, University of Technology, Sydney, PO Box 123, Broadway, NSW 2007, Australia
| | - C Kevin Boyce
- Department of the Geophysical Sciences, 5734 S. Ellis Avenue, Chicago, IL 60637, USA
| | - Cynthia S Jones
- Department of Ecology and Evolutionary Biology, University of Connecticut, 75 N. Eagleville Road, Unit-3043, Storrs, CT 06269, USA
| | - Karl J Niklas
- Department of Plant Biology, Cornell University, 412 Mann Library Building, Cornell University, Ithaca, NY 14853, USA
| | - Dana L Royer
- Department of Earth and Environmental Sciences, Wesleyan University, 265 Church Street, Middletown, CT 06459, USA
| | - Hirokazu Tsukaya
- Graduate School of Science, University of Tokyo, Science Build #2, 7-3-1 Hongo, Tokyo 113-0033, Japan
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Jaya E, Kubien DS, Jameson PE, Clemens J. Vegetative phase change and photosynthesis in Eucalyptus occidentalis: architectural simplification prolongs juvenile traits. TREE PHYSIOLOGY 2010; 30:393-403. [PMID: 20100699 DOI: 10.1093/treephys/tpp128] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
To understand the effect of shoot architecture on vegetative and reproductive phase changes, seedlings of Eucalyptus occidentalis (Myrtaceae) were grown as free-branching or as single-stem plants, the latter treatment resulting from the continual removal of axillary vegetative buds. In E. occidentalis, vegetative phase change was characterized by increasing leaf length/width ratios. In contrast to the behaviour of other woody species subjected to architectural manipulation of this kind, vegetative phase change was faster in branched plants than in single-stem plants, which continued to exhibit juvenile leaf morphology throughout the duration of this study. However, the first appearance of flowers occurred approximately synchronously in both treatments after 9 months, demonstrating that vegetative phase change and floral transition are developmentally uncoupled in this species. Leaf morphological changes that characterized phase change lagged behind changes in leaf anatomy and gas exchange. In single-stem plants with juvenile leaves, leaf intercellular airspace (20.9%) was almost double that in branched plants with adult foliage (11.2%). Photosynthetic gas exchange analyses indicated that the juvenile leaves of single-stem plants had greater Rubisco and electron transport capacities than those of free-branching plants. Higher leaf N concentrations were recorded in single-stem plants than in branched plants. These observations support the hypothesis that the complexity of shoot architecture impacts the rate of vegetative phase change, but does not affect reproductive phase change in this species.
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Affiliation(s)
- Elizabeth Jaya
- Institute of Molecular BioSciences, Massey University, Private Bag 11222, Palmerston North, New Zealand
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