NEOTROPICAL XENARTHRANS: a data set of occurrence of xenarthran species in the Neotropics

Long-term preservation of established fibroblast lines from six-banded armadillos (Euphractus sexcintus, Linnaeus, 1758) by extended passage and cryopreservation

Establishing new somatic cell cultures has raised significant attention as an effective and convenient way to preserve genetic samples for different applications. Although many lines have been established in model animals, none derived from six-banded armadillo species is currently available. We report the successful isolation and characterization of fibroblasts from six-banded armadillos, evaluating the cell quality after extended culture and cryopreservation. Initially, we collected ear skin from five captive adult individuals and identified fibroblast lines by morphology, karyotyping, and immunophenotyping assays. The isolated fibroblasts were evaluated after several passages (fourth, seventh, and tenth passages) and cryopreservation by slow freezing. Cell morphology, viability, metabolism, proliferative activity, mitochondrial membrane potential, and apoptosis levels were analyzed. The skin explants had great adhesion, and cell outgrowth could be seen after 3-6 d. The cells were verified as fibroblasts at the fourth passage by vimentin expression and normal karyotype (2n = 58). The viability remained high (> 87%) and constant from the fourth to the tenth passage (p > 0.05). The passages did not change the cell morphology and metabolic and growth rates. Moreover, cryopreservation did not affect most evaluated parameters; post-thawed cells maintained their viability, growth, metabolism, and apoptosis levels. Nevertheless, cryopreservation increased mitochondrial membrane permeability and cell population doubling time compared to non-cryopreserved cells (p < 0.05). In summary, viable fibroblasts can be obtained from six-banded armadillo skin while conserving their quality as the number of passages increases and featuring few changes after cryopreservation.

Taphonomy of harpy eagle predation on primates and other mammals

The goal of this study is to provide a taphonomic analysis of bone fragments found in harpy eagle nests in the Brazilian Amazonia, utilizing the largest sample of prey remains collected to date. Harpy eagle kill samples were collected from nine nests, between June 2016 and December 2020 in Mato Grosso, Brazil. We identified the specimens, calculated the number of identified specimens (NISP) and minimum number of individuals (MNI). These metrics were used to estimate bone survivability and fragmentation. A total of 1661 specimens (NISP) were collected, representing a minimum number of 234 individuals (MNI). We identified at least nine species of primates, which represent 63.8% of the individuals in the kill sample. Harpy eagles preyed mostly on the medium-sized capuchin and bearded saki monkeys (28.2% of the MNI), and two-toed sloths (17.7% of the MNI). The large woolly monkeys also represented a significant portion of the sample (11.5% of the MNI). Three distinct patterns of bone survivability were found, one characterizing two-toed sloths, another characterizing medium-sized monkeys, and a third typical of woolly monkeys. We conclude that harpy eagle predation leaves an identifiable signature on the prey with a bone survivability pattern specific to each taxon. The intertaxon variations observed in the taphonomic signatures of harpy eagle kills should be taken into account when evaluating the potential influence of these raptors as accumulators of bone material in both paleontological and neontological assemblages.

Climate change should drive mammal defaunation in tropical dry forests

Human-induced climate change has intensified negative impacts on socioeconomic factors, the environment, and biodiversity, including changes in rainfall patterns and an increase in global average temperatures. Drylands are particularly at risk, with projections suggesting they will become hotter, drier, and less suitable for a significant portion of their species, potentially leading to mammal defaunation. We use ecological niche modelling and community ecology biodiversity metrics to examine potential geographical range shifts of non-volant mammal species in the largest Neotropical dryland, the Caatinga, and evaluate impacts of climate change on mammal assemblages. According to projections, 85% of the mammal species will lose suitable habitats, with one quarter of species projected to completely lose suitable habitats by 2060. This will result in a decrease in species richness for more than 90% of assemblages and an increase in compositional similarity to nearby assemblages (i.e., reduction in spatial beta diversity) for 70% of the assemblages. Small-sized mammals will be the most impacted and lose most of their suitable habitats, especially in highlands. The scenario is even worse in the eastern half of Caatinga where habitat destruction already prevails, compounding the threats faced by species there. While species-specific responses can vary with respect to dispersal, behavior, and energy requirements, our findings indicate that climate change can drive mammal assemblages to biotic homogenization and species loss, with drastic changes in assemblage trophic structure. For successful long-term socioenvironmental policy and conservation planning, it is critical that findings from biodiversity forecasts are considered.

Endoparasites of marsupials in fragments of the Atlantic rainforest, western Paraná State, Brazil

Knowledge of taxonomy and biodiversity of parasites is fundamental to better understand ecosystem dynamics. The objective of this study was to describe the helminth fauna of two species of marsupials in five fragments of the Atlantic rainforest in the western region of Paraná State, Brazil. In a total of 4050 trap-nights, the animals were captured using Sherman, Tomahawk, and Pitfall traps, euthanized, necropsied, and their organs inspected for helminths. After identification of the parasites, descriptors of infection, such as prevalence, mean abundance, mean intensity, and range of intensity, were calculated. Collectively, six helminth species were observed in 18 animals. The following five species were observed in Marmosa paraguayana: Viannaia hamata (58.8%), Gracilioxyuris agilisis (52.9%), Travassostrongylus sextus (17.6%), Oncicola luehei (5.9%), and Pritchardia boliviensis (5.9%). Whereas the following two species were observed in Monodelphis dimidiata: Trichohelix tuberculata (100%) and Travassostrongylus sextus (100%). This study represents a new locality record for all helminths described herein, and a new host for four helminth species. This is the first report on the helminth fauna of Monodelphis dimidiata, expanding knowledge about marsupials in the Brazilian Atlantic Forest.

Osteosarcoma in a free-living yellow armadillo (Euphractus sexcinctus)

An adult male free-living yellow armadillo (Euphractus sexcinctus) was found by hunters and referred for clinical evaluation because of a tumour-like lesion on the carapace. The animal was lethargic and weak with severe dehydration, enophthalmos and cachexia, and was euthanized because of its very poor clinical condition. Necropsy revealed a whitish, exophytic, irregular and moist mass (7 × 6.5 × 1.5 cm) in the caudal third of the carapace. On cut section, the mass was hard, compact, irregular and whitish. Histopathology revealed a densely cellular, expansive, poorly delimited neoplasm composed of malignant mesenchymal cells arranged in islands and cords, interspersed by numerous areas of irregularly mineralized osteoid matrix. Neoplastic cells were intensely immunolabelled for vimentin. The diagnosis of a high-grade osteosarcoma of osteoblastic subtype was based on the clinical, gross, histopathological and immunohistochemical findings. This first report of an osteosarcoma in an armadillo expands the list of armadillo diseases and will assist the management of these animals by veterinarians.

Habitat loss estimation for assessing terrestrial mammalian species extinction risk: an open data framework

Terrestrial mammals face a severe crisis of habitat loss worldwide. Therefore, assessing information on habitat loss throughout different time periods is crucial for assessing species' conservation statuses based on the IUCN Red List system. To support the national extinction risk assessment in Brazil (2016-2022), we developed a script that uses the MapBiomas Project 6.0 data source of land cover and land use (annual maps at 30 m scale) within the Google Earth Engine (GEE) platform to calculate habitat loss. We defined suitable habitats from the MapBiomas Project land cover classification for 190 mammalian taxa, according to each species range map and ecological characteristics. We considered a period of three generation lengths to assess habitat loss in accordance with the Red List assessment criteria. We used the script to estimate changes in available habitat throughout the analyzed period within the species' known ranges. The results indicated that habitat loss occurred within 94.3% of the analyzed taxa range, with the Carnivora order suffering the greatest habitat loss, followed by the Cingulata order. These analyses may be decisive for applying criteria, defining categories during the assessment of at least 17 species (9%), enriching discussions, and raising new questions for several other species. We considered the outcome of estimating habitat loss for various taxa when applying criterion A, which refers to population reduction, thus supporting more accurate inferences about past population declines.

Natural forest regeneration on anthropized landscapes could overcome climate change effects on the endangered maned sloth (Bradypus torquatus, Illiger 1811)

Climate change and habitat loss have been identified as the main causes of species extinction. Forest regeneration and protected areas are essential to buffer climate change impacts and to ensure quality habitats for threatened species. We assessed the current and future environmental suitability for the maned sloth, Bradypus torquatus, under both future climate and forest restoration scenarios, using ecological niche modeling. We compared environmental suitability for two Evolutionarily Significant Units (ESUnorth and ESUsouth) using two climate change scenarios for 2070, and three potential forest regeneration scenarios. Likewise, we evaluated the protection degree of the suitable areas resulting from the models, according to Brazilian law: PA—Protected Areas; PPA—Permanent Protection Areas (environmentally sensitive areas in private properties); and LR—Legal Reserves (natural vegetation areas in private properties). Finally, we calculated the deficit of PPA and LR in each ESU, considering the current forest cover. Forest regeneration might mitigate the deleterious effects of climate change by maintaining and increasing environmental suitability in future scenarios. The ESUnorth contains more suitable areas (21,570 km²) than the ESUsouth (12,386 km²), with an increase in all future scenarios (up to 45,648 km² of new suitable areas), while ESUsouth might have a significant decrease (up to 7,546 km² less). Suitable areas are mostly unprotected (ESUnorth—65.5% and ESUsouth—58.3%). Therefore, PPA and PA can maintain only a small portion of current and future suitable areas. Both ESUs present a high deficit of PPA and LR, highlighting the necessity to act in the recovery of these areas to accomplish a large-scale restoration, mitigate climate change effects, and achieve, at least, a minimum forested area to safeguard the species. Notwithstanding, a long-term conservation of B. torquatus will benefit from forest regeneration besides those minimum requirements, allied to the protection of forest areas.

Taxonomic revision of maned sloths, subgenus Bradypus (Scaeopus), Pilosa, Bradypodidae, with revalidation of Bradypus crinitus Gray, 1850

We present a taxonomic revision of maned sloths, subgenus Bradypus (Scaeopus), a taxon endemic to the Brazilian Atlantic Forest and currently composed of a single species, the vulnerable Bradypus torquatus. Our review is based on coalescent species delimitation analyses using mitochondrial and nuclear DNA, morphological analyses, and field observations. Our integrative approach demonstrates that two species of maned sloth can be recognized: the northern maned sloth (Bradypus torquatusIlliger, 1811) occurring in the Brazilian states of Bahia and Sergipe, and the southern maned sloth (Bradypus crinitusGray, 1850), occurring in Rio de Janeiro and Espirito Santo states. The two species diverged in the Early Pliocene and are allopatrically distributed. We discuss the biogeographic pattern of the two maned sloth species, comparing it with other Atlantic Forest mammals. We also suggest that the conservation status of both maned sloths needs to be reassessed after this taxonomic rearrangement.

Medium and large-sized mammals in a remnant forest in the state of Rondônia, Brazil

The Brazilian mammalian fauna is threatened by several factors, the main ones being anthropogenic origins, such as agriculture, cattle ranching, and hunting. Medium and large mammals are continually affected by these factors. In this context, we conducted an inventory and estimated the abundance of medium and large mammals in a particular peri-urban remnant forest in the city of Porto, Rondônia. Fieldwork was carried out involving 88 kilometers of census during the daytime, indirect signs research, and interviews. We recorded 21 species of mammals. Private forest reserves have the potential to conserve endangered species, and therefore, actions that favor the connection of these areas in the rural environment should be prioritized

Spatial arrangement of silo bags is key to mitigate damage by wildlife

BACKGROUND

Silo bag is a major harvest storage option in many countries worldwide. Wildlife interacts with this new element in the rural landscape. As a result, wildlife activity could generate breaks in silo bag lining, causing losses to the stored content. The aim of this study was to analyze the damage in silo bags by large hairy armadillos (Chaetophractus villosus) according to different spatial arrangements of silo bags, in order to propose a management strategy to reduce the damage. Our prediction was that silo bags arranged in a cluster would have less damage by large hairy armadillos than bags arranged in a row or than single (isolated) bags at a certain plot. In addition, we expected that in a cluster the exposed outside of the bags would show increased damage compared to the inside of the cluster.

RESULTS

We measured 294 silo bags. Damage intensity (number of breaks/100 m silo bag perimeter) in silo bags arranged in a cluster was 72% lower than in bags arranged in a row (P = 0.03), and 77% lower than in single bags (P = 0.001). Moreover, we detected that damage intensity inside was 75% lower than outside of a cluster (P = 0.001).

CONCLUSION

We propose grouping in a cluster of parallel bags instead of installing them in a row or isolated bags at plot as a strategy that could be adopted and implemented by farmers in order to reduce the damage by large hairy armadillos, the most harmful wildlife species to silo bags in Argentina. © 2021 Society of Chemical Industry.

State of knowledge and updated distribution of the northern naked-tailed armadillo Cabassous centralis Miller, 1899 (Cingulata, Chlamyphoridae)

The northern naked-tailed armadillo (Cabassous centralis) is a small, poorly known armadillo species. We update the state of knowledge on this species, provide information on its current and potential distribution, and assess its conservation status and threats. We reviewed the existing literature and obtained georeferenced records from publications, online databases, and field researchers. A total of 174 documents mentioning C. centralis have been published between 1855 and 2019, about half of which (83) provided information on its distribution. The majority of publications came from Colombia. About 10% of publications included information about its ecology, concluding that it is a rare species that mainly occurs in areas with secondary vegetation. It seems to prefer complex habitats, as it is rarely found in fragmented or modified habitats. Consequently, it is possible that its ability to adapt to land use change is low. A total of 224 confirmed records allowed us to extend the species range to the northern Lacandona Forest in Mexico, the Andes of Colombia and southwards in Ecuador. Nevertheless, a distribution model suggests that the species could be even more widely distributed. C. centralis is listed in a threatened category in two countries, whereas more than half of the range countries have not assessed its conservation status. We consider its current global listing as Data Deficient to be appropriate, as many aspects of its ecology, reproduction, population size and trend, and the degree of impact of potential threats remain unknown.

Functional or Vestigial? The Genomics of the Pineal Gland in Xenarthra

Vestigial organs are historical echoes of past phenotypes. Determining whether a specific organ constitutes a functional or vestigial structure can be a challenging task, given that distinct levels of atrophy may arise between and within lineages. The mammalian pineal gland, an endocrine organ involved in melatonin biorhythmicity, represents a classic example, often yielding contradicting anatomical observations. In Xenarthra (sloths, anteaters, and armadillos), a peculiar mammalian order, the presence of a distinct pineal organ was clearly observed in some species (i.e., Linnaeus's two-toed sloth), but undetected in other closely related species (i.e., brown-throated sloth). In the nine-banded armadillo, contradicting evidence supports either functional or vestigial scenarios. Thus, to untangle the physiological status of the pineal gland in Xenarthra, we used a genomic approach to investigate the evolution of the gene hub responsible for melatonin synthesis and signaling. We show that both synthesis and signaling compartments are eroded and were probably lost independently among Xenarthra orders. Additionally, by expanding our analysis to 157 mammal genomes, we offer a comprehensive view showing that species with very distinctive habitats and lifestyles have convergently evolved a similar phenotype: Cetacea, Pholidota, Dermoptera, Sirenia, and Xenarthra. Our findings suggest that the recurrent inactivation of melatonin genes correlates with pineal atrophy and endorses the use of genomic analyses to ascertain the physiological status of suspected vestigial structures.

Ampliación de la distribución del Armadillo Cola de Trapo Transandino Cabassous centralis (Cingulata: Chlamyphoridae), para el Alto Magdalena en Colombia

Colombia es uno de los países con mayor riqueza de armadillos al contar con seis especies, pertenecientes a tres géneros, que abarcan la mayor parte del territorio nacional, siendo Cabassous centralis la única especie trasandina. En este estudio buscamos aportar al conocimiento de la distribución brindando nuevos registros para el departamento del Tolima. Durante un muestreo nocturno de serpientes, en enero de 2019, se observó y fotografió un individuo de Cabassous centralis en el oriente del departamento, en estribaciones de la Cordillera Oriental. Este registro, junto con un espécimen preservado en la colección de mamíferos del Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, confirman la presencia de la especie en el Tolima y son los registros más al sur en su distribución dentro del Valle del Magdalena.

Closing the Gaps to Understand the Tick Transmission of Anaplasma marginale among Giant Anteaters (Myrmecophaga tridactyla) in Argentina

Anaplasma marginale, a well-known cattle pathogen of tropical and subtropical world regions, has been previously molecularly characterized in a giant anteater (Myrmecophaga tridactyla) from Corrientes, Argentina. Ticks or other hematophagous arthropod involved in the wild transmission cycle remained unknown. The aim of the present study was to analyze the simultaneous occurrence of A. marginale in blood samples and ticks from giant anteaters from Corrientes in order to investigate if ticks could be relevant in the transmission among these mammals. Blood samples from 50 giant anteaters collected in different years and 26 ticks Amblyomma dubitatum and A. sculptum were studied through the molecular amplification of two unequivocal species-specific genes from A. marginale: msp5 and msp1β. Twenty five giant anteaters and tick organs (salivary glands, gut and oviduct) from 11 ticks tested positive to the A. marginale DNA amplification. The further molecular characterization through MSP1a tandem repeats analysis revealed the presence of genotypes circulating among giant anteaters that had been previously identified in cattle blood samples from the same geographical region. These results confirm the presence of A. marginale in giant anteaters in Corrientes and suggests that A. dubitatum and A. sculptum ticks could be involved in the transmission among giant anteaters. Future studies will determine the role of these tick species in the wild transmission cycle in the study area and the eventual connection with the domestic cycle.

Registro notable de armadillo de cola desnuda, Cabassous centralis (Cingulata: Chlamyphoridae), en el estado de Chiapas, México

El 19 de abril de 2020 se observó y fotografió un individuo de Cabassous centralis capturado por trabajadores de campo en un fragmento de vegetación secundaria en el ejido Jilumil, municipio de Salto de Agua, en el norte de Chiapas, México. Este registro es actualmente el más septentrional en la distribución conocida de esta especie, el cual se ubica a 18 km del registro más cercano publicado anteriormente.