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Liu Y, Xu Y, Cui X, Zhang B, Wang X, Qin X, Wang J, Li Y, Zhang W, Liu G, Chen T, Zhang G. Temporary Survival Increasing the Diversity of Culturable Heterotrophic Bacteria in the Newly Exposed Moraine at a Glacier Snout. Biology (Basel) 2022; 11:biology11111555. [PMID: 36358257 PMCID: PMC9687651 DOI: 10.3390/biology11111555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2022] [Revised: 09/11/2022] [Accepted: 10/20/2022] [Indexed: 11/05/2022]
Abstract
Laohugou Glacier No. 12 is located on the northern slope of the western Qilian Mountains with a temperate continental wet climate and an extremely cold winter. Bacteria in a newly exposed moraine have to cope with various pressures owing to deglaciation at the glacier snout. However, limited information is available regarding the high diversity and temporary survival of culturable heterotrophic bacteria under various environmental stresses. To examine the tolerance of extremophiles against varying environmental conditions in a newly exposed moraine, we simulated environmental stress in bacterial cultures. The results showed that the isolated strains belonged to actinobacteria, Proteobacteria, Bacteroidetes, Deinococcus-Thermus, and Firmicutes. Actinobacteria was the most abundant phylum, followed by Proteobacteria, at both high and low temperatures. Pseudarthrobacter was the most abundant genus, accounting for 14.2% of the total isolates. Although several microorganisms grew at 10 °C, the proportion of microorganisms that grew at 25 °C was substantially higher. In particular, 50% of all bacterial isolates grew only at a high temperature (HT), whereas 21.4% of the isolates grew at a low temperature (LT), and 38.6% of the isolates grew at both HT and LT. In addition, many radiation-resistant extremophiles were identified, which adapted to both cold and oxidative conditions. The nearest neighbors of approximately >90% of bacteria belonged to a nonglacial environment, such as oil-contaminated soil, rocks, and black sand, instead of glacial niches. This study provides insights into the ecological traits, stress responses, and temporary survival of culturable heterotrophic bacteria in a newly exposed moraine with variable environmental conditions and the relationship of these communities with the non-glacial environment. This study may help to understand the evolution, competition, and selective growth of bacteria in the transition regions between glaciers and retreats in the context of glacier melting and retreat owing to global warming.
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Affiliation(s)
- Yang Liu
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing 100049, China
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
| | - Yeteng Xu
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing 100049, China
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
| | - Xiaowen Cui
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- College of Geography and Environment Science, Northwest Normal University, Lanzhou 730070, China
| | - Binglin Zhang
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing 100049, China
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
| | - Xinyue Wang
- University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing 100049, China
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Xiang Qin
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
| | - Jinxiu Wang
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Yanzhao Li
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing 100049, China
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
| | - Wei Zhang
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Guangxiu Liu
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- School of Stomatology, Lanzhou University, Lanzhou 730000, China
| | - Tuo Chen
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- Correspondence: (T.C.); (G.Z.)
| | - Gaosen Zhang
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- Correspondence: (T.C.); (G.Z.)
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Toubes‐Rodrigo M, Potgieter‐Vermaak S, Sen R, Oddsdóttir ES, Elliott D, Cook S. Active microbial ecosystem in glacier basal ice fuelled by iron and silicate comminution-derived hydrogen. Microbiologyopen 2021; 10:e1200. [PMID: 34459543 PMCID: PMC8289488 DOI: 10.1002/mbo3.1200] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2021] [Revised: 05/10/2021] [Accepted: 05/11/2021] [Indexed: 02/01/2023] Open
Abstract
The basal zone of glaciers is characterized by physicochemical properties that are distinct from firnified ice due to strong interactions with underlying substrate and bedrock. Basal ice (BI) ecology and the roles that the microbiota play in biogeochemical cycling, weathering, and proglacial soil formation remain poorly described. We report on basal ice geochemistry, bacterial diversity (16S rRNA gene phylogeny), and inferred ecological roles at three temperate Icelandic glaciers. We sampled three physically distinct basal ice facies (stratified, dispersed, and debris bands) and found facies dependent on biological similarities and differences; basal ice character is therefore an important sampling consideration in future studies. Based on a high abundance of silicates and Fe-containing minerals and, compared to earlier BI literature, total C was detected that could sustain the basal ice ecosystem. It was hypothesized that C-fixing chemolithotrophic bacteria, especially Fe-oxidisers and hydrogenotrophs, mutualistically support associated heterotrophic communities. Basal ice-derived rRNA gene sequences corresponding to genera known to harbor hydrogenotrophic methanogens suggest that silicate comminution-derived hydrogen can also be utilized for methanogenesis. PICRUSt-predicted metabolism suggests that methane metabolism and C-fixation pathways could be highly relevant in BI, indicating the importance of these metabolic routes. The nutrients and microbial communities release from melting basal ice may play an important role in promoting pioneering communities establishment and soil development in deglaciating forelands.
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Affiliation(s)
- Mario Toubes‐Rodrigo
- AstrobiologyOUFaculty of Science, Technology, Engineering and MathematicsThe Open UniversityMilton KeynesUK
| | - Sanja Potgieter‐Vermaak
- Department of Natural SciencesEcology and Environment Research CentreManchester Metropolitan UniversityManchesterUK
| | - Robin Sen
- Department of Natural SciencesEcology and Environment Research CentreManchester Metropolitan UniversityManchesterUK
| | | | - David Elliott
- Environmental Sustainability Research CentreUniversity of DerbyDerbyUK
| | - Simon Cook
- Geography and Environmental ScienceUniversity of DundeeDundeeUK
- UNESCO Centre for Water Law, Policy and ScienceUniversity of DundeeDundeeUK
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Bendia AG, Lemos LN, Mendes LW, Signori CN, Bohannan BJM, Pellizari VH. Metabolic potential and survival strategies of microbial communities across extreme temperature gradients on Deception Island volcano, Antarctica. Environ Microbiol 2021; 23:4054-4073. [PMID: 34245102 DOI: 10.1111/1462-2920.15649] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2020] [Revised: 06/16/2021] [Accepted: 06/20/2021] [Indexed: 11/27/2022]
Abstract
Active volcanoes in Antarctica have remarkable temperature and geochemical gradients that could select for a wide variety of microbial adaptive mechanisms and metabolic pathways. Deception Island is a stratovolcano flooded by the sea, resulting in contrasting ecosystems such as permanent glaciers and active fumaroles, which creates steep gradients that have been shown to affect microbial diversity. In this study, we used shotgun metagenomics and metagenome-assembled genomes to explore the metabolic potentials and survival strategies of microbial communities along an extreme temperature gradient in fumarole and glacier sediments on Deception Island. We observed that communities from a 98 °C fumarole were significantly enriched in genes related to hyperthermophilic (e.g. reverse gyrase, GroEL/GroES and thermosome) and oxidative stress responses, as well as genes related to sulfate reduction, ammonification and carbon fixation. Communities from <80 °C fumaroles possessed more genes related osmotic, cold- and heat-shock responses, and diverse metabolic potentials, such as those related to sulfur oxidation and denitrification, while glacier communities showed abundant metabolic potentials mainly related to heterotrophy. Through the reconstruction of genomes, we were able to reveal the metabolic potentials and different survival strategies of underrepresented taxonomic groups, especially those related to Nanoarchaeota, Pyrodictiaceae and thermophilic ammonia-oxidizing archaeal lineages.
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Affiliation(s)
- Amanda Gonçalves Bendia
- Departamento de Oceanografia Biológica, Instituto Oceanográfico, Universidade de São Paulo (USP), Praça do Oceanográfico, 191, São Paulo, SP, CEP 05508-120, Brazil
| | - Leandro Nascimento Lemos
- Laboratório de Biologia Celular e Molecular, Centro de Energia Nuclear na Agricultura, Universidade de São Paulo, Avenida Centenário 303, Piracicaba, SP, CEP 13416-00, Brazil
| | - Lucas William Mendes
- Laboratório de Biologia Celular e Molecular, Centro de Energia Nuclear na Agricultura, Universidade de São Paulo, Avenida Centenário 303, Piracicaba, SP, CEP 13416-00, Brazil
| | - Camila Negrão Signori
- Departamento de Oceanografia Biológica, Instituto Oceanográfico, Universidade de São Paulo (USP), Praça do Oceanográfico, 191, São Paulo, SP, CEP 05508-120, Brazil
| | - Brendan J M Bohannan
- Department of Biology, Institute of Ecology and Evolution, University of Oregon, Eugene, OR, USA
| | - Vivian Helena Pellizari
- Departamento de Oceanografia Biológica, Instituto Oceanográfico, Universidade de São Paulo (USP), Praça do Oceanográfico, 191, São Paulo, SP, CEP 05508-120, Brazil
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Thomas FA, Mohan M, Krishnan KP. Bacterial diversity and their metabolic profiles in the sedimentary environments of Ny-Ålesund, Arctic. Antonie Van Leeuwenhoek 2021; 114:1339-1360. [PMID: 34148162 DOI: 10.1007/s10482-021-01604-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Accepted: 06/01/2021] [Indexed: 11/26/2022]
Abstract
Sedimentary environments in the Arctic are known to harbor diverse microbial communities playing a crucial role in the remineralization of organic matter and associated biogeochemical cycles. In this study, we used a combination of culture-dependent and culture-independent approaches to understanding the bacterial community composition associated with the sediments of a terrestrial versus fjord system in the Svalbard Arctic. Community-level metabolic profiling and growth response of retrieved bacterial isolates towards different carbon substrates at varying temperatures were also studied to assess the metabolic response of communities and isolates in the system. Bacterial species belonging to Cryobacterium and Psychrobacter dominated the terrestrial and fjord sediment retrievable fraction. Amplicon sequencing analysis revealed higher bacterial diversity in the terrestrial sediments (Shannon index; 8.135 and 7.935) as compared to the fjord sediments (4.5-5.37). Phylum Proteobacteria and Bacteroidetes dominated both terrestrial and fjord sediments. Phylum Verrucomicrobia and Cyanobacteria were abundant in terrestrial sediments while Epsilonbacteraeota and Fusobacteriia dominated the fjord sediments. Significant differences were observed in the carbon substrate utilization profiles between the terrestrial and fjord sediments at both 4 °C and 20 °C incubations (p < 0.005). Utilization of N-acetyl-D-glucosamine, D-mannitol and Tween-80 by the sediment communities and bacterial isolates from both systems, irrespective of their temperature incubations implies the affinity of bacteria for such substrates as energy sources and for their survival in cold environments. Our results suggest the ability of sediment bacterial communities to adjust their substrate utilization profiles according to condition changes in the ecosystems and are found to be less influenced by their phylogenetic relatedness.
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Affiliation(s)
- Femi Anna Thomas
- National Centre for Polar and Ocean Research, Ministry of Earth Sciences, Headland Sada, Vasco da Gama, Goa, 403804, India
- School of Earth, Ocean and Atmospheric Sciences, Goa University, Taleigao Plateau Goa, 403206, India
| | - Mahesh Mohan
- School of Environmental Sciences, Mahatma Gandhi University, Kottayam, Kerala, 686560, India
| | - K P Krishnan
- National Centre for Polar and Ocean Research, Ministry of Earth Sciences, Headland Sada, Vasco da Gama, Goa, 403804, India.
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Kohler TJ, Vinšová P, Falteisek L, Žárský JD, Yde JC, Hatton JE, Hawkings JR, Lamarche-Gagnon G, Hood E, Cameron KA, Stibal M. Patterns in Microbial Assemblages Exported From the Meltwater of Arctic and Sub-Arctic Glaciers. Front Microbiol 2020; 11:669. [PMID: 32351489 PMCID: PMC7174618 DOI: 10.3389/fmicb.2020.00669] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2019] [Accepted: 03/24/2020] [Indexed: 01/14/2023] Open
Abstract
Meltwater streams connect the glacial cryosphere with downstream ecosystems. Dissolved and particulate matter exported from glacial ecosystems originates from contrasting supraglacial and subglacial environments, and exported microbial cells have the potential to serve as ecological and hydrological indicators for glacial ecosystem processes. Here, we compare exported microbial assemblages from the meltwater of 24 glaciers from six (sub)Arctic regions – the southwestern Greenland Ice Sheet, Qeqertarsuaq (Disko Island) in west Greenland, Iceland, Svalbard, western Norway, and southeast Alaska – differing in their lithology, catchment size, and climatic characteristics, to investigate spatial and environmental factors structuring exported meltwater assemblages. We found that 16S rRNA gene sequences of all samples were dominated by the phyla Proteobacteria, Bacteroidetes, and Actinobacteria, with Verrucomicrobia also common in Greenland localities. Clustered OTUs were largely composed of aerobic and anaerobic heterotrophs capable of degrading a wide variety of carbon substrates. A small number of OTUs dominated all assemblages, with the most abundant being from the genera Polaromonas, Methylophilus, and Nitrotoga. However, 16–32% of a region’s OTUs were unique to that region, and rare taxa revealed unique metabolic potentials and reflected differences between regions, such as the elevated relative abundances of sulfur oxidizers Sulfuricurvum sp. and Thiobacillus sp. at Svalbard sites. Meltwater alpha diversity showed a pronounced decrease with increasing latitude, and multivariate analyses of assemblages revealed significant regional clusters. Distance-based redundancy and correlation analyses further resolved associations between whole assemblages and individual OTUs with variables primarily corresponding with the sampled regions. Interestingly, some OTUs indicating specific metabolic processes were not strongly associated with corresponding meltwater characteristics (e.g., nitrification and inorganic nitrogen concentrations). Thus, while exported assemblage structure appears regionally specific, and probably reflects differences in dominant hydrological flowpaths, OTUs can also serve as indicators for more localized microbially mediated processes not captured by the traditional characterization of bulk meltwater hydrochemistry. These results collectively promote a better understanding of microbial distributions across the Arctic, as well as linkages between the terrestrial cryosphere habitats and downstream ecosystems.
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Affiliation(s)
- Tyler J Kohler
- Department of Ecology, Faculty of Science, Charles University, Prague, Czechia.,Stream Biofilm and Ecosystem Research Laboratory, School of Architecture, Civil and Environmental Engineering, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
| | - Petra Vinšová
- Department of Ecology, Faculty of Science, Charles University, Prague, Czechia
| | - Lukáš Falteisek
- Department of Ecology, Faculty of Science, Charles University, Prague, Czechia
| | - Jakub D Žárský
- Department of Ecology, Faculty of Science, Charles University, Prague, Czechia
| | - Jacob C Yde
- Department of Environmental Sciences, Western Norway University of Applied Sciences, Sogndal, Norway
| | - Jade E Hatton
- School of Earth Sciences, University of Bristol, Bristol, United Kingdom
| | - Jon R Hawkings
- National High Magnetic Field Laboratory, Department of Earth, Ocean & Atmospheric Science, Florida State University, Tallahassee, FL, United States.,GFZ German Research Centre for Geosciences, Potsdam, Germany
| | | | - Eran Hood
- Department of Natural Sciences, University of Alaska Southeast, Juneau, AK, United States
| | - Karen A Cameron
- Institute of Biological, Environmental and Rural Sciences, Faculty of Earth and Life Sciences, Aberystwyth University, Aberystwyth, United Kingdom
| | - Marek Stibal
- Department of Ecology, Faculty of Science, Charles University, Prague, Czechia
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Sharma Ghimire P, Tripathee L, Zhang Q, Guo J, Ram K, Huang J, Sharma CM, Kang S. Microbial mercury methylation in the cryosphere: Progress and prospects. Sci Total Environ 2019; 697:134150. [PMID: 32380618 DOI: 10.1016/j.scitotenv.2019.134150] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2019] [Revised: 08/20/2019] [Accepted: 08/26/2019] [Indexed: 06/11/2023]
Abstract
Mercury (Hg) is one of the most toxic heavy metals, and its cycle is mainly controlled by oxidation-reduction reactions carried out by photochemical or microbial process under suitable conditions. The deposition and accumulation of methylmercury (MeHg) in various ecosystems, including the cryospheric components such as snow, meltwater, glaciers, and ice sheet, and subsequently in the food chain pose serious health concerns for living beings. Unlike the abundance of knowledge about the processes of MeHg production over land and oceans, little is known about the sources and production/degradation rate of MeHg in cryosphere systems. In addition, processes controlling the concentration of Hg and MeHg in the cryosphere remains poorly understood, and filling this scientific gap has been challenging. Therefore, it is essential to study and review the deposition and accumulation by biological, physical, and chemical mechanisms involved in Hg methylation in the cryosphere. This review attempts to address knowledge gaps in understanding processes, especially biotic and abiotic, applicable for Hg methylation in the cryosphere. First, we focus on the variability in Hg concentration and mechanisms of Hg methylation, including physical, chemical, microbial, and biological processes, and transportation in the cryosphere. Then, we elaborate on the mechanism of redox reactions and biotic and abiotic factors controlling Hg methylation and biogeochemistry of Hg in the cryosphere. We also present possible mechanisms of Hg methylation with an emphasis on microbial transformation and molecular function to understand variability in Hg concentration in the cryosphere. Recent advancements in the genetic and physicochemical mechanisms of Hg methylation are also presented. Finally, we summarize and propose a method to study the unsolved issues of Hg methylation in the cryosphere.
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Affiliation(s)
- Prakriti Sharma Ghimire
- State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-environment and Resources, Chinese Academy of Sciences (CAS), Lanzhou 730000, China; Himalayan Environment Research Institute (HERI), Kathmandu, Nepal
| | - Lekhendra Tripathee
- State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-environment and Resources, Chinese Academy of Sciences (CAS), Lanzhou 730000, China; Himalayan Environment Research Institute (HERI), Kathmandu, Nepal.
| | - Qianggong Zhang
- Key Laboratory of Tibetan Environment Changes and Land Surface Processes, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China; CAS Center for Excellence in Tibetan Plateau Earth Sciences, Beijing 100085, China
| | - Junming Guo
- State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-environment and Resources, Chinese Academy of Sciences (CAS), Lanzhou 730000, China
| | - Kirpa Ram
- Institute of Environment and Sustainable Development, Banaras Hindu University, Varanasi, India
| | - Jie Huang
- CAS Center for Excellence in Tibetan Plateau Earth Sciences, Beijing 100085, China; Key Laboratory of Tibetan Environment Changes and Land Surface Processes, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China
| | - Chhatra Mani Sharma
- Himalayan Environment Research Institute (HERI), Kathmandu, Nepal; Central Department of Environmental Science, Tribhuvan University, Kathmandu, Nepal
| | - Shichang Kang
- State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-environment and Resources, Chinese Academy of Sciences (CAS), Lanzhou 730000, China; CAS Center for Excellence in Tibetan Plateau Earth Sciences, Beijing 100085, China.
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Burns R, Wynn PM, Barker P, McNamara N, Oakley S, Ostle N, Stott AW, Tuffen H, Zhou Z, Tweed FS, Chesler A, Stuart M. Direct isotopic evidence of biogenic methane production and efflux from beneath a temperate glacier. Sci Rep 2018; 8:17118. [PMID: 30459433 DOI: 10.1038/s41598-018-35253-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2018] [Accepted: 10/18/2018] [Indexed: 11/08/2022] Open
Abstract
The base of glaciers and ice sheets provide environments suitable for the production of methane. High pressure conditions beneath the impermeable 'cap' of overlying ice promote entrapment of methane reserves that can be released to the atmosphere during ice thinning and meltwater evacuation. However, contemporary glaciers and ice sheets are rarely accounted for as methane contributors through field measurements. Here, we present direct field-based evidence of methane production and release from beneath the Icelandic glacier Sólheimajökull, where geothermal activity creates sub-oxic conditions suited to methane production and preservation along the meltwater flow path. Methane production at the glacier bed (48 tonnes per day, or 39 mM CH4 m-2 day-1), and evasion to the atmosphere from the proglacial stream (41 tonnes per day, or 32 M CH4 m-2 day-1) indicates considerable production and release to the atmosphere during the summer melt season. Isotopic signatures (-60.2‰ to -7.6‰ for δ13CCH4 and -324.3‰ to +161.1‰ for DCH4), support a biogenic signature within waters emerging from the subglacial environment. Temperate glacial methane production and release may thus be a significant and hitherto unresolved contributor of a potent greenhouse gas to the atmosphere.
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Žárský JD, Kohler TJ, Yde JC, Falteisek L, Lamarche-Gagnon G, Hawkings JR, Hatton JE, Stibal M. Prokaryotic assemblages in suspended and subglacial sediments within a glacierized catchment on Qeqertarsuaq (Disko Island), west Greenland. FEMS Microbiol Ecol 2018; 94:5017442. [DOI: 10.1093/femsec/fiy100] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2018] [Accepted: 05/27/2018] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jakub D Žárský
- Department of Ecology, Faculty of Science, Charles University, Prague, Vinicna 7, 128 44 Prague 2, Czechia
| | - Tyler J Kohler
- Department of Ecology, Faculty of Science, Charles University, Prague, Vinicna 7, 128 44 Prague 2, Czechia
| | - Jacob C Yde
- Department of Environment Sciences, Western Norway University of Applied Sciences, Royrgata 6, 6856 Sogndal, Norway
| | - Lukáš Falteisek
- Department of Ecology, Faculty of Science, Charles University, Prague, Vinicna 7, 128 44 Prague 2, Czechia
| | - Guillaume Lamarche-Gagnon
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, Bristol BS8 1SS, UK
| | - Jon R Hawkings
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, Bristol BS8 1SS, UK
| | - Jade E Hatton
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, Bristol BS8 1SS, UK
| | - Marek Stibal
- Department of Ecology, Faculty of Science, Charles University, Prague, Vinicna 7, 128 44 Prague 2, Czechia
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Ma H, Yan W, Xiao X, Shi G, Li Y, Sun B, Dou Y, Zhang Y. Ex Situ Culturing Experiments Revealed Psychrophilic Hydrogentrophic Methanogenesis Being the Potential Dominant Methane-Producing Pathway in Subglacial Sediment in Larsemann Hills, Antarctic. Front Microbiol 2018. [PMID: 29515536 PMCID: PMC5826372 DOI: 10.3389/fmicb.2018.00237] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
Abstract
It was recognized only recently that subglacial ecosystems support considerable methanogenic activity, thus significantly contributing the global methane production. However, only limited knowledge is available on the physiological characteristics of this kind of methanogenic community because of the technical constraints associated with sampling and cultivation under corresponding environmental conditions. To elucidate methanogenesis beneath the glacial margin in East Antarctic Ice Sheet, we took an integrated approach that included cultivation of microbes associated with the sediment samples in the lab and analysis of mcrA gene therein. After 7 months of incubation, the highest rate of methanogenesis [398 (pmol/day)/gram] was observed at 1°C on a supply of H2. The rates of methanogenesis were lower on acetate or unamended substrate than on H2. The rates on these two substrates increased when the temperature was raised. Methanomicrobiales predominated before and after prolonged incubation, regardless whether H2, acetate, or unamended substrate were the energy source. Therefore, it was inferred that psychrophilic hydrogenotrophic methanogenesis was the primary methane-producing pathway in the subglacial ecosystem we sampled. These findings highlight the effects of temperature and substrate on potential methanogenesis in the subglacial sediment of this area, and may help us for a better estimation on the Antarctica methane production in a changing climate.
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Affiliation(s)
- Hongmei Ma
- SOA Key Laboratory for Polar Science, Polar Research Institute of China, Shanghai, China
| | - Wenkai Yan
- School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China
| | - Xiang Xiao
- School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China
| | - Guitao Shi
- SOA Key Laboratory for Polar Science, Polar Research Institute of China, Shanghai, China
| | - Yuansheng Li
- SOA Key Laboratory for Polar Science, Polar Research Institute of China, Shanghai, China
| | - Bo Sun
- SOA Key Laboratory for Polar Science, Polar Research Institute of China, Shanghai, China
| | - Yinke Dou
- College of Electrical and Power Engineering, Taiyuan University of Technology, Taiyuan, China
| | - Yu Zhang
- State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, Shanghai, China.,Institute of Oceanography, Shanghai Jiao Tong University, Shanghai, China
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Cameron KA, Stibal M, Olsen NS, Mikkelsen AB, Elberling B, Jacobsen CS. Potential Activity of Subglacial Microbiota Transported to Anoxic River Delta Sediments. Microb Ecol 2017; 74:6-9. [PMID: 28070677 PMCID: PMC5486838 DOI: 10.1007/s00248-016-0926-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/19/2016] [Accepted: 12/26/2016] [Indexed: 06/06/2023]
Abstract
The Watson River drains a portion of the SW Greenland ice sheet, transporting microbial communities from subglacial environments to a delta at the head of Søndre Strømfjord. This study investigates the potential activity and community shifts of glacial microbiota deposited and buried under layers of sediments within the river delta. A long-term (12-month) incubation experiment was established using Watson River delta sediment under anaerobic conditions, with and without CO2/H2 enrichment. Within CO2/H2-amended incubations, sulphate depletion and a shift in the microbial community to a 52% predominance of Desulfosporosinus meridiei by day 371 provides evidence for sulphate reduction. We found evidence of methanogenesis in CO2/H2-amended incubations within the first 5 months, with production rates of ~4 pmol g-1 d-1, which was likely performed by methanogenic Methanomicrobiales- and Methanosarcinales-related organisms. Later, a reduction in methane was observed to be paired with the depletion of sulphate, and we hypothesise that sulphate reduction out competed hydrogenotrophic methanogenesis. The structure and diversity of the original CO2/H2-amended incubation communities changed dramatically with a major shift in predominant community members and a decline in diversity and cell abundance. These results highlight the need for further investigations into the fate of subglacial microbiota within downstream environments.
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Affiliation(s)
- Karen A Cameron
- Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Øster Voldgade 10, DK-1350, Copenhagen, Denmark.
- Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark.
- Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University, Penglais, Aberystwyth, SY23 3FL, UK.
| | - Marek Stibal
- Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Øster Voldgade 10, DK-1350, Copenhagen, Denmark
- Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark
- Department of Ecology, Faculty of Science, Charles University, Viničná 7, 128 43, Prague, Czech Republic
| | - Nikoline S Olsen
- Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Øster Voldgade 10, DK-1350, Copenhagen, Denmark
- Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark
| | - Andreas B Mikkelsen
- Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark
| | - Bo Elberling
- Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark
| | - Carsten S Jacobsen
- Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Øster Voldgade 10, DK-1350, Copenhagen, Denmark
- Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark
- Department of Environmental Science, Aarhus University, Frederiksborgvej 399, DK-4000, Roskilde, Denmark
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11
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de Menezes GCA, Godinho VM, Porto BA, Gonçalves VN, Rosa LH. Antarctomyces pellizariae sp. nov., a new, endemic, blue, snow resident psychrophilic ascomycete fungus from Antarctica. Extremophiles 2017; 21:259-69. [DOI: 10.1007/s00792-016-0895-x] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2016] [Accepted: 11/18/2016] [Indexed: 11/27/2022]
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12
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Achberger AM, Christner BC, Michaud AB, Priscu JC, Skidmore ML, Vick-Majors TJ. Microbial Community Structure of Subglacial Lake Whillans, West Antarctica. Front Microbiol 2016; 7:1457. [PMID: 27713727 PMCID: PMC5032586 DOI: 10.3389/fmicb.2016.01457] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Accepted: 08/31/2016] [Indexed: 11/13/2022] Open
Abstract
Subglacial Lake Whillans (SLW) is located beneath ∼800 m of ice on the Whillans Ice Stream in West Antarctica and was sampled in January of 2013, providing the first opportunity to directly examine water and sediments from an Antarctic subglacial lake. To minimize the introduction of surface contaminants to SLW during its exploration, an access borehole was created using a microbiologically clean hot water drill designed to reduce the number and viability of microorganisms in the drilling water. Analysis of 16S rRNA genes (rDNA) amplified from samples of the drilling and borehole water allowed an evaluation of the efficacy of this approach and enabled a confident assessment of the SLW ecosystem inhabitants. Based on an analysis of 16S rDNA and rRNA (i.e., reverse-transcribed rRNA molecules) data, the SLW community was found to be bacterially dominated and compositionally distinct from the assemblages identified in the drill system. The abundance of bacteria (e.g., Candidatus Nitrotoga, Sideroxydans, Thiobacillus, and Albidiferax) and archaea (Candidatus Nitrosoarchaeum) related to chemolithoautotrophs was consistent with the oxidation of reduced iron, sulfur, and nitrogen compounds having important roles as pathways for primary production in this permanently dark ecosystem. Further, the prevalence of Methylobacter in surficial lake sediments combined with the detection of methanogenic taxa in the deepest sediment horizons analyzed (34–36 cm) supported the hypothesis that methane cycling occurs beneath the West Antarctic Ice Sheet. Large ratios of rRNA to rDNA were observed for several operational taxonomic units abundant in the water column and sediments (e.g., Albidiferax, Methylobacter, Candidatus Nitrotoga, Sideroxydans, and Smithella), suggesting a potentially active role for these taxa in the SLW ecosystem. Our findings are consistent with chemosynthetic microorganisms serving as the ecological foundation in this dark subsurface environment, providing new organic matter that sustains a microbial ecosystem beneath the West Antarctic Ice Sheet.
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Affiliation(s)
- Amanda M Achberger
- Department of Biological Sciences, Louisiana State University, Baton Rouge LA, USA
| | - Brent C Christner
- Department of Biological Sciences, Louisiana State University, Baton RougeLA, USA; Department of Microbiology and Cell Science, University of Florida, GainesvilleFL, USA; Biodiversity Institute, University of Florida, GainesvilleFL, USA
| | - Alexander B Michaud
- Department of Land Resources and Environmental Science, Montana State University, Bozeman MT, USA
| | - John C Priscu
- Department of Land Resources and Environmental Science, Montana State University, Bozeman MT, USA
| | - Mark L Skidmore
- Department of Earth Sciences, Montana State University, Bozeman MT, USA
| | - Trista J Vick-Majors
- Department of Land Resources and Environmental Science, Montana State University, Bozeman MT, USA
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13
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Cameron KA, Stibal M, Hawkings JR, Mikkelsen AB, Telling J, Kohler TJ, Gözdereliler E, Zarsky JD, Wadham JL, Jacobsen CS. Meltwater export of prokaryotic cells from the Greenland ice sheet. Environ Microbiol 2016; 19:524-534. [PMID: 27489963 DOI: 10.1111/1462-2920.13483] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2016] [Accepted: 07/31/2016] [Indexed: 11/26/2022]
Abstract
Microorganisms are flushed from the Greenland Ice Sheet (GrIS) where they may contribute towards the nutrient cycling and community compositions of downstream ecosystems. We investigate meltwater microbial assemblages as they exit the GrIS from a large outlet glacier, and as they enter a downstream river delta during the record melt year of 2012. Prokaryotic abundance, flux and community composition was studied, and factors affecting community structures were statistically considered. The mean concentration of cells exiting the ice sheet was 8.30 × 104 cells mL-1 and we estimate that ∼1.02 × 1021 cells were transported to the downstream fjord in 2012, equivalent to 30.95 Mg of carbon. Prokaryotic microbial assemblages were dominated by Proteobacteria, Bacteroidetes, and Actinobacteria. Cell concentrations and community compositions were stable throughout the sample period, and were statistically similar at both sample sites. Based on our observations, we argue that the subglacial environment is the primary source of the river-transported microbiota, and that cell export from the GrIS is dependent on discharge. We hypothesise that the release of subglacial microbiota to downstream ecosystems will increase as freshwater flux from the GrIS rises in a warming world.
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Affiliation(s)
- Karen A Cameron
- Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Øster Voldgade 10, DK-1350, Copenhagen, Denmark.,Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark
| | - Marek Stibal
- Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Øster Voldgade 10, DK-1350, Copenhagen, Denmark.,Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark.,Department of Ecology, Faculty of Science, Charles University, Viničná 7, 128 43, Prague, Czech Republic
| | - Jon R Hawkings
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, BS8 1SS, Bristol, UK
| | - Andreas B Mikkelsen
- Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark
| | - Jon Telling
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, BS8 1SS, Bristol, UK
| | - Tyler J Kohler
- Department of Ecology, Faculty of Science, Charles University, Viničná 7, 128 43, Prague, Czech Republic
| | - Erkin Gözdereliler
- Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Øster Voldgade 10, DK-1350, Copenhagen, Denmark.,Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark
| | - Jakub D Zarsky
- Department of Ecology, Faculty of Science, Charles University, Viničná 7, 128 43, Prague, Czech Republic
| | - Jemma L Wadham
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, BS8 1SS, Bristol, UK
| | - Carsten S Jacobsen
- Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark.,Department of Environmental Science, Aarhus University, Frederiksborgvej 399, DK-4000, Roskilde, Denmark
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14
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He S, Ding LL, Xu K, Geng JJ, Ren HQ. Effect of low temperature on highly unsaturated fatty acid biosynthesis in activated sludge. Bioresour Technol 2016; 211:494-501. [PMID: 27035483 DOI: 10.1016/j.biortech.2016.03.069] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2016] [Revised: 03/09/2016] [Accepted: 03/13/2016] [Indexed: 06/05/2023]
Abstract
Low temperature is a limiting factor for the microbial activity of activated sludge for sewage treatment plant in winter. Highly unsaturated fatty acid (UFA) biosynthesis, phospholipid fatty acid (PLFA) constituents and microbial structure in activated sludge at low temperature were investigated. Over 12 gigabases of metagenomic sequence data were generated with the Illumina HiSeq 2000 platform. The result showed 43.11% of phospholipid fatty acid (PLFA) in the activated sludge participated in UFA biosynthesis, and γ-Linolenic could be converted to Arachidonic acid at low temperature. The highly UFA biosynthesis in activated sludge was n-6 highly UFA biosynthesis, rather than n-3 highly UFA biosynthesis. The microbial community structures of activated sludge were analyzed by PLFA and high-throughput sequencing (HiSeq) simultaneously. Acidovorax, Pseudomonas, Flavobacterium and Polaromonas occupied higher percentage at 5°C, and genetic changes of highly UFA biosynthesis derived from microbial community structures change.
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Affiliation(s)
- Su He
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, Jiangsu, PR China
| | - Li-Li Ding
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, Jiangsu, PR China
| | - Ke Xu
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, Jiangsu, PR China
| | - Jin-Ju Geng
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, Jiangsu, PR China
| | - Hong-Qiang Ren
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing 210023, Jiangsu, PR China.
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15
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Andam CP, Choudoir MJ, Vinh Nguyen A, Sol Park H, Buckley DH. Contributions of ancestral inter-species recombination to the genetic diversity of extant Streptomyces lineages. ISME J 2016; 10:1731-41. [PMID: 26849310 DOI: 10.1038/ismej.2015.230] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2015] [Revised: 10/27/2015] [Accepted: 11/06/2015] [Indexed: 11/10/2022]
Abstract
Streptomyces species produce many important antibiotics and have a crucial role in soil nutrient cycling. However, their evolutionary history remains poorly characterized. We have evaluated the impact of homologous recombination on the evolution of Streptomyces using multi-locus sequence analysis of 234 strains that represent at least 11 species clusters. Evidence of inter-species recombination is widespread but not uniform within the genus and levels of mosaicism vary between species clusters. Most phylogenetically incongruent loci are monophyletic at the scale of species clusters and their subclades, suggesting that these recombination events occurred in shared ancestral lineages. Further investigation of two mosaic species clusters suggests that genes acquired by inter-species recombination may have become fixed in these lineages during periods of demographic expansion; implicating a role for phylogeography in determining contemporary patterns of genetic diversity. Only by examining the phylogeny at the scale of the genus is apparent that widespread phylogenetically incongruent loci in Streptomyces are derived from a far smaller number of ancestral inter-species recombination events.
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Affiliation(s)
- Cheryl P Andam
- Soil and Crop Sciences, School of Integrative Plant Sciences, Cornell University, Ithaca, NY USA
| | - Mallory J Choudoir
- Soil and Crop Sciences, School of Integrative Plant Sciences, Cornell University, Ithaca, NY USA
| | - Anh Vinh Nguyen
- Soil and Crop Sciences, School of Integrative Plant Sciences, Cornell University, Ithaca, NY USA
| | - Han Sol Park
- Soil and Crop Sciences, School of Integrative Plant Sciences, Cornell University, Ithaca, NY USA
| | - Daniel H Buckley
- Soil and Crop Sciences, School of Integrative Plant Sciences, Cornell University, Ithaca, NY USA
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16
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Abstract
Snow and ice environments cover up to 21% of the Earth's surface. They have been regarded as extreme environments because of their low temperatures, high UV irradiation, low nutrients and low water availability, and thus, their microbial activity has not been considered relevant from a global microbial ecology viewpoint. In this review, we focus on why snow and ice habitats might not be extreme from a microbiological perspective. Microorganisms interact closely with the abiotic conditions imposed by snow and ice habitats by having diverse adaptations, that include genetic resistance mechanisms, to different types of stresses in addition to inhabiting various niches where these potential stresses might be reduced. The microbial communities inhabiting snow and ice are not only abundant and taxonomically diverse, but complex in terms of their interactions. Altogether, snow and ice seem to be true ecosystems with a role in global biogeochemical cycles that has likely been underestimated. Future work should expand past resistance studies to understanding the function of these ecosystems.
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Affiliation(s)
- Lorrie Maccario
- Environmental Microbial Genomics, Laboratoire Ampère, CNRS UMR 5005, Université de Lyon, Ecole Centrale de Lyon, 36 Avenue Guy de Collongue, 69134 Ecully, France
| | - Laura Sanguino
- Environmental Microbial Genomics, Laboratoire Ampère, CNRS UMR 5005, Université de Lyon, Ecole Centrale de Lyon, 36 Avenue Guy de Collongue, 69134 Ecully, France
| | - Timothy M Vogel
- Environmental Microbial Genomics, Laboratoire Ampère, CNRS UMR 5005, Université de Lyon, Ecole Centrale de Lyon, 36 Avenue Guy de Collongue, 69134 Ecully, France
| | - Catherine Larose
- Environmental Microbial Genomics, Laboratoire Ampère, CNRS UMR 5005, Université de Lyon, Ecole Centrale de Lyon, 36 Avenue Guy de Collongue, 69134 Ecully, France.
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17
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Abstract
The Earth's cryosphere comprises those regions that are cold enough for water to turn into ice. Recent findings show that the icy realms of polar oceans, glaciers and ice sheets are inhabited by microorganisms of all three domains of life, and that temperatures below 0 °C are an integral force in the diversification of microbial life. Cold-adapted microorganisms maintain key ecological functions in icy habitats: where sunlight penetrates the ice, photoautotrophy is the basis for complex food webs, whereas in dark subglacial habitats, chemoautotrophy reigns. This Review summarizes current knowledge of the microbial ecology of frozen waters, including the diversity of niches, the composition of microbial communities at these sites and their biogeochemical activities.
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Affiliation(s)
- Antje Boetius
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany.,Max Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359 Bremen, Germany
| | - Alexandre M Anesio
- Bristol Glaciology Center, School of Geographical Sciences, University of Bristol, BS8 1SS, UK
| | - Jody W Deming
- School of Oceanography, Box 357940, University of Washington, Seattle, Washington 98195, USA
| | - Jill A Mikucki
- Department of Biology, 276 Bicentennial Way, Middlebury College, Middlebury, Vermont 05753, USA
| | - Josephine Z Rapp
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany.,Max Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359 Bremen, Germany
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Algora C, Vasileiadis S, Wasmund K, Trevisan M, Krüger M, Puglisi E, Adrian L. Manganese and iron as structuring parameters of microbial communities in Arctic marine sediments from the Baffin Bay. FEMS Microbiol Ecol 2015; 91:fiv056. [PMID: 25994158 DOI: 10.1093/femsec/fiv056] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/14/2015] [Indexed: 11/14/2022] Open
Abstract
The Arctic Baffin Bay between Canada and Greenland is sea ice-covered during the majority of the year, restricting primary production to the summer months. Sediments receive low amounts of mostly terrestrial- and less marine-derived organic matter. To study microbial communities constrained by physicochemical conditions changing with distance from land and ocean depth, we applied high-throughput 16S rRNA gene sequencing and compared sequence diversity with biogeochemical parameters in 40 different sediment samples. Samples originated from seven cores down to 470 cm below seafloor along a shelf-to-basin transect. Bacterial diversity decreased faster with depth in basin than in shelf sediments, suggesting higher organic matter content sustained diversity into greater depths. All samples were dominated by Betaproteobacteria (mostly order Burkholderiales), which were especially abundant in basin sediments with low organic carbon and high Mn and Fe pore water concentrations. Strong statistical correlations between concentrations of reduced Mn and/or Fe and the relative abundances of Betaproteobacteria suggest that this group is involved in metal reduction in Baffin Bay sediments. Dehalococcoidia (phylum Chloroflexi) were abundant in all samples, especially in shelf sediments with high organic content. This study indicates that Mn and/or Fe play important roles structuring microbial communities in Arctic sediments poor in organic matter.
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Affiliation(s)
- Camelia Algora
- Department of Isotope Biogeochemistry, Helmholtz Centre for Environmental Research - UFZ, Permoserstraße 15, 04318 Leipzig, Germany
| | - Sotirios Vasileiadis
- Istituto di Chimica Agraria ed Ambientale, Università Cattolica del Sacro Cuore, Via Emilia Parmense 84, 29122 Piacenza, Italy
| | - Kenneth Wasmund
- Department of Isotope Biogeochemistry, Helmholtz Centre for Environmental Research - UFZ, Permoserstraße 15, 04318 Leipzig, Germany
| | - Marco Trevisan
- Istituto di Chimica Agraria ed Ambientale, Università Cattolica del Sacro Cuore, Via Emilia Parmense 84, 29122 Piacenza, Italy
| | - Martin Krüger
- Department of Resource Geochemistry, Germany Federal Institute for Geosciences and Natural Resources (BGR), Stilleweg 2, 30655 Hannover; Germany
| | - Edoardo Puglisi
- Istituto di Microbiologia, Università Cattolica del Sacro Cuore, Via Emilia Parmense 84, 29122 Piacenza, Italy
| | - Lorenz Adrian
- Department of Isotope Biogeochemistry, Helmholtz Centre for Environmental Research - UFZ, Permoserstraße 15, 04318 Leipzig, Germany
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Dieser M, Broemsen ELJE, Cameron KA, King GM, Achberger A, Choquette K, Hagedorn B, Sletten R, Junge K, Christner BC. Molecular and biogeochemical evidence for methane cycling beneath the western margin of the Greenland Ice Sheet. ISME J 2014; 8:2305-16. [PMID: 24739624 PMCID: PMC4992074 DOI: 10.1038/ismej.2014.59] [Citation(s) in RCA: 93] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2013] [Revised: 03/08/2014] [Accepted: 03/14/2014] [Indexed: 11/08/2022]
Abstract
Microbial processes that mineralize organic carbon and enhance solute production at the bed of polar ice sheets could be of a magnitude sufficient to affect global elemental cycles. To investigate the biogeochemistry of a polar subglacial microbial ecosystem, we analyzed water discharged during the summer of 2012 and 2013 from Russell Glacier, a land-terminating outlet glacier at the western margin of the Greenland Ice Sheet. The molecular data implied that the most abundant and active component of the subglacial microbial community at these marginal locations were bacteria within the order Methylococcales (59-100% of reverse transcribed (RT)-rRNA sequences). mRNA transcripts of the particulate methane monooxygenase (pmoA) from these taxa were also detected, confirming that methanotrophic bacteria were functional members of this subglacial ecosystem. Dissolved methane ranged between 2.7 and 83 μM in the subglacial waters analyzed, and the concentration was inversely correlated with dissolved oxygen while positively correlated with electrical conductivity. Subglacial microbial methane production was supported by δ(13)C-CH4 values between -64‰ and -62‰ together with the recovery of RT-rRNA sequences that classified within the Methanosarcinales and Methanomicrobiales. Under aerobic conditions, >98% of the methane in the subglacial water was consumed over ∼30 days incubation at ∼4 °C and rates of methane oxidation were estimated at 0.32 μM per day. Our results support the occurrence of active methane cycling beneath this region of the Greenland Ice Sheet, where microbial communities poised in oxygenated subglacial drainage channels could serve as significant methane sinks.
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Affiliation(s)
- Markus Dieser
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA
| | - Erik L J E Broemsen
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA
| | - Karen A Cameron
- Applied Physics Laboratory, Polar Science Center, University of Washington, Seattle, WA, USA
| | - Gary M King
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA
| | - Amanda Achberger
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA
| | - Kyla Choquette
- Applied Science Engineering and Technology Laboratory, Environment and Natural Resources Institute, University of Alaska Anchorage, Anchorage, AK, USA
| | - Birgit Hagedorn
- Applied Science Engineering and Technology Laboratory, Environment and Natural Resources Institute, University of Alaska Anchorage, Anchorage, AK, USA
| | - Ron Sletten
- Department of Earth and Space Sciences, University of Washington, Seattle, WA, USA
| | - Karen Junge
- Applied Physics Laboratory, Polar Science Center, University of Washington, Seattle, WA, USA
| | - Brent C Christner
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA
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Boyd ES, Hamilton TL, Havig JR, Skidmore ML, Shock EL. Chemolithotrophic primary production in a subglacial ecosystem. Appl Environ Microbiol 2014; 80:6146-53. [PMID: 25085483 DOI: 10.1128/AEM.01956-14] [Citation(s) in RCA: 72] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Glacial comminution of bedrock generates fresh mineral surfaces capable of sustaining chemotrophic microbial communities under the dark conditions that pervade subglacial habitats. Geochemical and isotopic evidence suggests that pyrite oxidation is a dominant weathering process generating protons that drive mineral dissolution in many subglacial systems. Here, we provide evidence correlating pyrite oxidation with chemosynthetic primary productivity and carbonate dissolution in subglacial sediments sampled from Robertson Glacier (RG), Alberta, Canada. Quantification and sequencing of ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO) transcripts suggest that populations closely affiliated with Sideroxydans lithotrophicus, an iron sulfide-oxidizing autotrophic bacterium, are abundant constituents of microbial communities at RG. Microcosm experiments indicate sulfate production during biological assimilation of radiolabeled bicarbonate. Geochemical analyses of subglacial meltwater indicate that increases in sulfate levels are associated with increased calcite and dolomite dissolution. Collectively, these data suggest a role for biological pyrite oxidation in driving primary productivity and mineral dissolution in a subglacial environment and provide the first rate estimate for bicarbonate assimilation in these ecosystems. Evidence for lithotrophic primary production in this contemporary subglacial environment provides a plausible mechanism to explain how subglacial communities could be sustained in near-isolation from the atmosphere during glacial-interglacial cycles.
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21
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Stibal M, Bælum J, Holben WE, Sørensen SR, Jensen A, Jacobsen CS. Microbial degradation of 2,4-dichlorophenoxyacetic acid on the Greenland ice sheet. Appl Environ Microbiol 2012; 78:5070-6. [PMID: 22582066 DOI: 10.1128/AEM.00400-12] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The Greenland ice sheet (GrIS) receives organic carbon (OC) of anthropogenic origin, including pesticides, from the atmosphere and/or local sources, and the fate of these compounds in the ice is currently unknown. The ability of supraglacial heterotrophic microbes to mineralize different types of OC is likely a significant factor determining the fate of anthropogenic OC on the ice sheet. Here we determine the potential of the microbial community from the surface of the GrIS to mineralize the widely used herbicide 2,4-dichlorophenoxyacetic acid (2,4-D). Surface ice cores were collected and incubated for up to 529 days in microcosms simulating in situ conditions. Mineralization of side chain- and ring-labeled [(14)C]2,4-D was measured in the samples, and quantitative PCR targeting the tfdA genes in total DNA extracted from the ice after the experiment was performed. We show that the supraglacial microbial community on the GrIS contains microbes that are capable of degrading 2,4-D and that they are likely present in very low numbers. They can mineralize 2,4-D at a rate of up to 1 nmol per m(2) per day, equivalent to ∼26 ng C m(-2) day(-1). Thus, the GrIS should not be considered a mere reservoir of all atmospheric contaminants, as it is likely that some deposited compounds will be removed from the system via biodegradation processes before their potential release due to the accelerated melting of the ice sheet.
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