Enzymes, Manganese, or Iron? Drivers of Oxidative Organic Matter Decomposition in Soils

Ectomycorrhizal fungi enhance pine growth by stimulating iron-dependent mechanisms with trade-offs in symbiotic performance

Iron (Fe) is crucial for metabolic functions of living organisms. Plants access occluded Fe through interactions with rhizosphere microorganisms and symbionts. Yet, the interplay between Fe addition and plant-mycorrhizal interactions, especially the molecular mechanisms underlying mycorrhiza-assisted Fe processing in plants, remains largely unexplored. We conducted mesocosms in Pinus plants inoculated with different ectomycorrhizal fungi (EMF) Suillus species under conditions with and without Fe coatings. Meta-transcriptomic, biogeochemical, and X-ray fluorescence imaging analyses were applied to investigate early-stage mycorrhizal roots. While Fe addition promoted Pinus growth, it concurrently reduced mycorrhiza formation rate, symbiosis-related metabolites in plant roots, and aboveground plant carbon and macronutrient content. This suggested potential trade-offs between Fe-enhanced plant growth and symbiotic performance. However, the extent of this trade-off may depend on interactions between host plants and EMF species. Interestingly, dual EMF species were more effective at facilitating plant Fe uptake by inducing diverse Fe-related functions than single-EMF species. This subsequently triggered various Fe-dependent physiological and biochemical processes in Pinus roots, significantly contributing to Pinus growth. However, this resulted in a greater carbon allocation to roots, relatively reducing the aboveground plant carbon content. Our study offers critical insights into how EMF communities rebalance benefits of Fe-induced effects on symbiotic partners.

Mineral-mediated stability of organic carbon in soil and relevant interaction mechanisms

Soil, the largest terrestrial carbon reservoir, is central to climate change and relevant feedback to environmental health. Minerals are the essential components that contribute to over 60% of soil carbon storage. However, how the interactions between minerals and organic carbon shape the carbon transformation and stability remains poorly understood. Herein, we critically review the primary interactions between organic carbon and soil minerals and the relevant mechanisms, including sorption, redox reaction, co-precipitation, dissolution, polymerization, and catalytic reaction. These interactions, highly complex with the combination of multiple processes, greatly affect the stability of organic carbon through the following processes: (1) formation or deconstruction of the mineral-organic carbon association; (2) oxidative transformation of the organic carbon with minerals; (3) catalytic polymerization of organic carbon with minerals; and (4) varying association stability of organic carbon according to the mineral transformation. Several pieces of evidence related to the carbon turnover and stability during the interaction with soil minerals in the real eco-environment are then demonstrated. We also highlight the current research gaps and outline research priorities, which may map future directions for a deeper mechanisms-based understanding of the soil carbon storage capacity considering its interactions with minerals.

Land Use Change from Natural Tropical Forests to Managed Ecosystems Reduces Gross Nitrogen Production Rates and Increases the Soil Microbial Nitrogen Limitation

Understanding the underlying mechanisms of soil microbial nitrogen (N) utilization under land use change is critical to evaluating soil N availability or limitation and its environmental consequences. A combination of soil gross N production and ecoenzymatic stoichiometry provides a promising avenue for nutrient limitation assessment in soil microbial metabolism. Gross N production via 15N tracing and ecoenzymatic stoichiometry through the vector and threshold element ratio (Vector-TER) model were quantified to evaluate the soil microbial N limitation in response to land use changes. We used tropical soil samples from a natural forest ecosystem and three managed ecosystems (paddy, rubber, and eucalyptus sites). Soil extracellular enzyme activities were significantly lower in managed ecosystems than in a natural forest. The Vector-TER model results indicated microbial carbon (C) and N limitations in the natural forest soil, and land use change from the natural forest to managed ecosystems increased the soil microbial N limitation. The soil microbial N limitation was positively related to gross N mineralization (GNM) and nitrification (GN) rates. The decrease in microbial biomass C and N as well as hydrolyzable ammonium N in managed ecosystems led to the decrease in N-acquiring enzymes, inhibiting GNM and GN rates and ultimately increasing the microbial N limitation. Soil GNM was also positively correlated with leucine aminopeptidase and β-N-acetylglucosaminidase. The results highlight that converting tropical natural forests to managed ecosystems can increase the soil microbial N limitation through reducing the soil microbial biomass and gross N production.

Synchrotron science for sustainability: life cycle of metals in the environment

The movement of metals through the environment links together a wide range of scientific fields: from earth sciences and geology as weathering releases minerals; to environmental sciences as metals are mobilized and transformed, cycling through soil and water; to biology as living things take up metals from their surroundings. Studies of these fundamental processes all require quantitative analysis of metal concentrations, locations, and chemical states. Synchrotron X-ray tools can address these requirements with high sensitivity, high spatial resolution, and minimal sample preparation. This perspective describes the state of fundamental scientific questions in the lifecycle of metals, from rocks to ecosystems, from soils to plants, and from environment to animals. Key X-ray capabilities and facility infrastructure for future synchrotron-based analytical resources serving these areas are summarized, and potential opportunities for future experiments are explored.

Association between soil organic carbon and calcium in acidic grassland soils from Point Reyes National Seashore, CA

Organo-mineral and organo-metal associations play an important role in the retention and accumulation of soil organic carbon (SOC). Recent studies have demonstrated a positive correlation between calcium (Ca) and SOC content in a range of soil types. However, most of these studies have focused on soils that contain calcium carbonate (pH > 6). To assess the importance of Ca-SOC associations in lower pH soils, we investigated their physical and chemical interaction in the grassland soils of Point Reyes National Seashore (CA, USA) at a range of spatial scales. Multivariate analyses of our bulk soil characterisation dataset showed a strong correlation between exchangeable Ca (CaExch; 5-8.3 c.molc kg-1) and SOC (0.6-4%) content. Additionally, linear combination fitting (LCF) of bulk Ca K-edge X-ray absorption near-edge structure (XANES) spectra revealed that Ca was predominantly associated with organic carbon across all samples. Scanning transmission X-ray microscopy near-edge X-ray absorption fine structure spectroscopy (STXM C/Ca NEXAFS) showed that Ca had a strong spatial correlation with C at the microscale. The STXM C NEXAFS K-edge spectra indicated that SOC had a higher abundance of aromatic/olefinic and phenolic C functional groups when associated with Ca, relative to C associated with Fe. In regions of high Ca-C association, the STXM C NEXAFS spectra were similar to the spectrum from lignin, with moderate changes in peak intensities and positions that are consistent with oxidative C transformation. Through this association, Ca thus seems to be preferentially associated with plant-like organic matter that has undergone some oxidative transformation, at depth in acidic grassland soils of California. Our study highlights the importance of Ca-SOC complexation in acidic grassland soils and provides a conceptual model of its contribution to SOC preservation, a research area that has previously been unexplored.

Supplementary Information

The online version contains supplementary material available at 10.1007/s10533-023-01059-2.

Involvement of Bacterial and Fungal Extracellular Products in Transformation of Manganese-Bearing Minerals and Its Environmental Impact

Manganese oxides are considered an essential component of natural geochemical barriers due to their redox and sorptive reactivity towards essential and potentially toxic trace elements. Despite the perception that they are in a relatively stable phase, microorganisms can actively alter the prevailing conditions in their microenvironment and initiate the dissolution of minerals, a process that is governed by various direct (enzymatic) or indirect mechanisms. Microorganisms are also capable of precipitating the bioavailable manganese ions via redox transformations into biogenic minerals, including manganese oxides (e.g., low-crystalline birnessite) or oxalates. Microbially mediated transformation influences the (bio)geochemistry of manganese and also the environmental chemistry of elements intimately associated with its oxides. Therefore, the biodeterioration of manganese-bearing phases and the subsequent biologically induced precipitation of new biogenic minerals may inevitably and severely impact the environment. This review highlights and discusses the role of microbially induced or catalyzed processes that affect the transformation of manganese oxides in the environment as relevant to the function of geochemical barriers.

Hematite-mediated Mn(II) abiotic oxidation under oxic conditions: pH effect and mineralization

Interactions between manganese (Mn) and iron (Fe) are widespread processes in soils and sediments, however, the abiotic transformation mechanisms are not fully understood. Herein, Mn(II) oxidation on hematite were investigated at various pH under oxic condition. Mn(II) oxidation rates increased from 3 × 10^-4 to 8 × 10^-2 h^-1 as pH increased from 7.0 to 9.0, whereas hematite enhanced Mn(II) oxidation rates to 1 h^-1. During oxidation process, high pH could promote the oxidation of Mn(II) into Mn minerals, resulting in the rapid consumption of the newly-formed H⁺, and high pH facilitated Mn(II) adsorption and oxidation by altering Mn(II) reactivity and speciation. Only granule-like hausmannite was found on the hematite surface at pH 7.0, whereas hausmannite particles and feitknechtite and manganite nanowires were formed at pH from 7.5 to 9.0. Moreover, a co-shell structured nanowire composed of manganite and feitknechtite was observed owing to autocatalytic reactions. Specifically, electron transfers between Mn(II) and O₂ occurred on the surface or through bulk phase of hematite, and direct electron transfers in the O₂-Mn(II) complex and indirect electron transfers in the O₂-Fe(II/III)-Mn(II) complex may both have contribution to the overall reactions. The findings provide a comprehensive interpretation of Fe-Mn interaction and have implications for the formation of soil Fe-Mn oxyhydroxides with unique properties in controlling element cycling.

Methylmercury Degradation by Trivalent Manganese

Methylmercury (MeHg) is a potent neurotoxin and has great adverse health impacts on humans. Organisms and sunlight-mediated demethylation are well-known detoxification pathways of MeHg, yet whether abiotic environmental components contribute to MeHg degradation remains poorly known. Here, we report that MeHg can be degraded by trivalent manganese (Mn(III)), a naturally occurring and widespread oxidant. We found that 28 ± 4% MeHg could be degraded by Mn(III) located on synthesized Mn dioxide (MnO_2-x) surfaces during the reaction of 0.91 μg·L^-1 MeHg and 5 g·L^-1 mineral at an initial pH of 6.0 for 12 h in 10 mM NaNO₃ at 25 °C. The presence of low-molecular-weight organic acids (e.g., oxalate and citrate) substantially enhances MeHg degradation by MnO_2-x via the formation of soluble Mn(III)-ligand complexes, leading to the cleavage of the carbon-Hg bond. MeHg can also be degraded by reactions with Mn(III)-pyrophosphate complexes, with apparent degradation rate constants comparable to those by biotic and photolytic degradation. Thiol ligands (cysteine and glutathione) show negligible effects on MeHg demethylation by Mn(III). This research demonstrates potential roles of Mn(III) in degrading MeHg in natural environments, which may be further explored for remediating heavily polluted soils and engineered systems containing MeHg.

Aerobic Denitrification Enhanced by Immobilized Slow-Released Iron/Activated Carbon Aquagel Treatment of Low C/N Micropolluted Water: Denitrification Performance, Denitrifying Bacterial Community Co-occurrence, and Implications

The key limiting factors in the treatment of low C/N micropolluted water bodies are deficient essential electron donors for nitrogen removal processes. An iron/activated carbon aquagel (IACA) was synthesized as a slowly released inorganic electron donor to enhance aerobic denitrification performance in low C/N micropolluted water treatment. The denitrification efficiency in IACA reactors was enhanced by more than 56.72% and the highest of 94.12% was accomplished compared with those of the control reactors. Moreover, the COD_Mn removal efficiency improved by more than 34.32% in IACA reactors. The Illumina MiSeq sequencing consequence explained that the denitrifying bacteria with facultative denitrification, iron oxidation, and iron reduction function were located in the dominant species niches in the IACA reactors (e.g., Pseudomonas, Leptothrix, and Comamonas). The diversity and richness of the denitrifying bacterial communities were enhanced in the IACA reactors. Network analysis indicated that aerobic denitrifying bacterial consortia in IACA reactors presented a more complicated co-occurrence structure. The IACA reactors presented the potential for long-term denitrification operation. This study affords a pathway to utilize IACA, promoting aerobic denitrification during low C/N micropolluted water body treatment.

Hydrodynamic and geochemical controls on soil carbon mineralization upon entry into aquatic systems

Erosion is the most widespread form of soil degradation and an important pathway of carbon transfer from land into aquatic systems, with significant impact on water quality and carbon cycle. However, it remains debatable whether erosion induces a carbon source or sink, and the fate of eroded soil carbon in aquatic systems remains poorly constrained. Here, we collect 41 representative soils from seven erosion-influenced basins and conduct microcosm simulation experiments to examine the fate of soil carbon under three different scenarios. We showed that soil carbon mineralization was generally promoted (by up to 10 times) in water under turbulence relative to in soils, but suppressed under static conditions upon entering into aquatic systems. Moreover, the enhancement of mineralization in turbulent systems is primarily related to soil aggregate content, while suppression in static systems positively relates to macromolecule abundance, indicating that soil geochemistry affects the magnitude of hydrodynamic effects on carbon mineralization. Random forest model further predicts that erosion may induce significant carbon sources in basins dominated by turbulent waters and aggregate-rich soils. Our findings demonstrate hydrodynamic and geochemical controls on soil carbon mineralization upon delivery into aquatic systems, which is a non-negligible part of the boundless carbon cycle and must be considered when making region-specific conservation strategies to reduce CO₂ emissions from inland waters.

Effects of C/Mn Ratios on the Sorption and Oxidative Degradation of Small Organic Molecules on Mn-Oxides

Manganese (Mn) oxides have a high surface area and redox potential that facilitate sorption and/or oxidation of organic carbon (OC), but their role in regulating soil C storage is relatively unexplored. Small OC compounds with distinct structures were reacted with Mn(III/IV)-oxides to investigate the effects of OC/Mn molar ratios on Mn-OC interaction mechanisms. Dissolved and solid-phase OC and Mn were measured to quantify the OC sorption to and/or the redox reaction with Mn-oxides. Mineral transformation was evaluated using X-ray diffraction and X-ray absorption spectroscopy. Higher OC/Mn ratios resulted in higher sorption and/or redox transformation; however, interaction mechanisms differed at low or high OC/Mn ratios for some OC. Citrate, pyruvate, ascorbate, and catechol induced Mn-oxide dissolution. The average oxidation state of Mn in the solid phase did not change during the reaction with citrate, suggesting ligand-promoted mineral dissolution, but decreased significantly during reactions with the other compounds, suggesting reductive dissolution mechanisms. Phthalate primarily sorbed on Mn-oxides with no detectable formation of redox products. Mn-OC interactions led primarily to C loss through OC oxidation into inorganic C, except phthalate, which was predominantly immobilized in the solid phase. Together, these results provided detailed fundamental insights into reactions happening at organo-mineral interfaces in soils.

Manganese Oxidation States in Volcanic Soils across Annual Rainfall Gradients

Manganese (Mn) exists as Mn(II), Mn(III), or Mn(IV) in soils, and the Mn oxidation state controls the roles of Mn in numerous environmental processes. However, the variations of Mn oxidation states with climate remain unknown. We determined the Mn oxidation states in highly weathered bulk volcanic soils (primary minerals free) across two rainfall gradients covering mean annual precipitation (MAP) of 0.25-5 m in the Hawaiian Islands. With increasing MAP, the soil redox conditions generally shifted from oxic to suboxic and to anoxic despite fluctuating at each site; concurrently, the proportions of Mn(IV) and Mn(II) decreased and increased, respectively. Mn(III) was low at both low and high MAP, but accumulated substantially, up to 80% of total Mn, in soils with prevalent suboxic conditions at intermediate MAP. Mn(III) was likely hosted in Mn(III,IV) and iron(III) oxides or complexed with organic matter, and its distribution among these hosts varied with soil redox potentials and soil pH. Soil redox conditions and rainfall-driven leaching jointly controlled exchangeable Mn(II) in soils, with its concentration peaking at intermediate MAP. The Mn redox chemistry was at disequilibrium, with the oxidation states correlating with long-term average soil redox potentials better than with soil pH. The soil redox conditions likely fluctuated between oxic and anoxic conditions more frequently at intermediate than at low and high MAP, creating biogeochemical hot spots where Mn, Fe, and other redox-sensitive elements may be actively cycled.

Bioenergetic control of soil carbon dynamics across depth

Soil carbon dynamics is strongly controlled by depth globally, with increasingly slow dynamics found at depth. The mechanistic basis remains however controversial, limiting our ability to predict carbon cycle-climate feedbacks. Here we combine radiocarbon and thermal analyses with long-term incubations in absence/presence of continuously ¹³C/¹⁴C-labelled plants to show that bioenergetic constraints of decomposers consistently drive the depth-dependency of soil carbon dynamics over a range of mineral reactivity contexts. The slow dynamics of subsoil carbon is tightly related to both its low energy density and high activation energy of decomposition, leading to an unfavourable 'return-on-energy-investment' for decomposers. We also observe strong acceleration of millennia-old subsoil carbon decomposition induced by roots ('rhizosphere priming'), showing that sufficient supply of energy by roots is able to alleviate the strong energy limitation of decomposition. These findings demonstrate that subsoil carbon persistence results from its poor energy quality together with the lack of energy supply by roots due to their low density at depth.

Distribution of Mn Oxidation States in Grassland Soils and Their Relationships with Soil Pores

Manganese (Mn) is known to be an active contributor to processing and cycling of soil organic carbon (C), yet the exact mechanisms behind its interactions with C are poorly understood. Plant diversity in terrestrial ecosystems drives feedback links between plant C inputs and soil pores, where the latter, in turn, impact the redox environment and Mn. This study examined associations between soil pores (>36 μm Ø) and Mn within intact soils from two grassland ecosystems, after their >6-year implementation in a replicated field experiment. We used μ-XRF imaging and XANES spectroscopy to explore spatial distribution patterns of Mn oxidation states, combined with X-ray computed microtomography and 2D zymography. A high plant diversity system (restored prairie) increased soil C and modified spatial distribution patterns of soil pores as compared to a single species system (monoculture switchgrass). In switchgrass, the abundance of oxidized and reduced Mn oxidation states varied with distance from pores consistently with anticipated O₂ diffusion, while in the soil from restored prairie, the spatial patterns suggested that biological activity played a greater role in influencing Mn distributions. Based on the findings, we propose a hypothesis that Mn transformations promote C gains in soils of high plant diversity grasslands.

Salt-tolerant plant moderates the effect of salinity on soil organic carbon mineralization in a subtropical tidal wetland

Although salinization is widely known to affect cycling of soil carbon (C) in tidal freshwater wetlands, the role of the presence or absence of plants in mediating the responses of soil organic carbon (SOC) mineralization to salinization is poorly understood. In this study, we translocated soils collected from a tidal freshwater wetland to sites with varying salinities along a subtropical estuarine gradient and established unplanted and planted (with the salt-tolerant plant Cyperus malaccensis Lam.) mesocosms at each site. We simultaneously investigated cumulative soil CO₂ emissions, C-acquiring enzyme activities, availability of labile organic C (LOC), and structures of bacterial and fungal communities. Overall, in the planted mesocosm, the soil LOC content and the activities of β-1,4-glucosidase, cellobiohydrolase, phenol oxidase, and peroxidase increased with salinization. However, in the unplanted mesocosm, soil LOC content decreased with increasing salinity, whereas all the C-acquiring enzyme activities did not change. In addition, salinization favored the dominance of bacterial and fungal copiotrophs (e.g., γ-Proteobacteria, Bacteroidetes, Firmicutes, and Ascomycota) in the planted mesocosms. Contrarily, in the unplanted mesocosms salinization favored bacterial and fungal oligotrophs (e.g., α-Proteobacteria, Chloroflexi, Acidobacteria, and Basidiomycota). In both planted and unplanted mesocosms, cumulative soil CO₂ emissions were affected by soil LOC content, activities of C-acquiring enzymes, and microbial C-use trophic strategies. Overall, cumulative soil CO₂ emissions increased by 35% with increasing salinity in the planted mesocosm but decreased by 37% as salinity increased in the unplanted mesocosm. Our results demonstrate that the presence or absence of salt-tolerant plants can moderate the effect of salinity on SOC mineralization in tidal wetland soils. Future C prediction models should embed both planted and unplanted modules to accurately simulate cycling of soil C in tidal wetlands under sea level rise.

Oxygen Limitation Accelerates Regeneration of Active Sites on a MnO2 Surface: Promoting Transformation of Organic Matter and Carbon Preservation

Birnessite (δ-MnO₂) is a layered manganese oxide widely present in the environment and actively participates in the transformation of natural organic matter (NOM) in biogeochemical processes. However, the effect of oxygen on the dynamic interface processes of NOM and δ-MnO₂ remains unclear. This study systematically investigated the interactions between δ-MnO₂ and fulvic acid (FA) under both aerobic and anaerobic conditions. FA was transformed by δ-MnO₂ via direct electron transfer and the generated reactive oxygen species (ROS). During the 32-day reaction, 79.8% of total organic carbon (TOC) in solution was removed under anaerobic conditions, unexpectedly higher than that under aerobic conditions (69.8%), suggesting that oxygen limitation was more conducive to the oxidative transformation of FA by δ-MnO₂. The oxygen vacancies (O_V) on the surface of δ-MnO₂ were more exposed under anaerobic conditions, thus promoting the adsorption and transformation of FA as well as regeneration of the active sites. Additionally, the reaction of FA with δ-MnO₂ weakened the strongly bonded lattice oxygen (O_latt), and the released O_latt was an important source of ROS. Interestingly, a part of organic carbon (OC) was preserved by forming MnCO₃, which might be a novel mechanism for carbon preservation. These findings contribute to an improved understanding of the dynamic interface processes between MnO₂ and NOM and provide new insights into the effects of oxygen limitation on the cycling and preservation of OC.

Influence of Organic Ligands on the Redox Properties of Fe(II) as Determined by Mediated Electrochemical Oxidation

Fe(II) has been extensively studied due to its importance as a reductant in biogeochemical processes and contaminant attenuation. Previous studies have shown that ligands can alter aqueous Fe(II) redox reactivity but their data interpretation is constrained by the use of probe compounds. Here, we employed mediated electrochemical oxidation (MEO) as an approach to directly quantify the extent of Fe(II) oxidation in the absence and presence of three model organic ligands (citrate, nitrilotriacetic acid, and ferrozine) across a range of potentials (E_H) and pH, thereby manipulating oxidation over a broad range of fixed thermodynamic conditions. Fe(III)-stabilizing ligands enhanced Fe(II) reactivity in thermodynamically unfavorable regions (i.e., low pH and E_H) while an Fe(II) stabilizing ligand (ferrozine) prevented oxidation across all thermodynamic regions. We experimentally derived apparent standard redox potentials, E_H^ϕ, for these and other (oxalate, oxalate₂, NTA₂, EDTA, and OH₂) Fe-ligand redox couples via oxidative current integration. Preferential stabilization of Fe(III) over Fe(II) decreased E_H^ϕ values, and a Nernstian correlation between E_H^ϕ and log(K_Fe(III)/K_Fe(II)) exists across a wide range of potentials and stability constants. We used this correlation to estimate log(K_Fe(III)/K_Fe(II)) for a natural organic matter isolate, demonstrating that MEO can be used to measure iron stability constant ratios for unknown ligands.

Both specific plant functional type loss and vegetation change influence litter metallic element release in an alpine treeline ecotone

Climate warming changes the plant community composition and biodiversity. Dominate species or plant functional types (PFTs) loss may influence alpine ecosystem processes, but much uncertainty remains. This study tested whether loss of specific PFTs and vegetation variation would impact the metallic element release of mixed litter in an alpine treeline ecotone. Six representative PFTs in the alpine ecosystem on the eastern Tibetan Plateau were selected. Litterbags were used to determine the release of potassium, calcium, magnesium, sodium, manganese, zinc, copper, iron, and aluminum from litter loss of specific PFTs after 669 days of decomposition in coniferous forest (CF) and alpine shrubland (AS). The results showed that potassium, sodium, magnesium, and copper were net released, while aluminum, iron, and manganese were accumulated after 669 days. Functional type mixtures promoted the release of potassium, sodium, aluminum, and zinc (synergistic effect), while inhibiting the release of calcium, magnesium, and iron (antagonistic effect). Further, loss of specific plant functional type significantly affected the aluminum and iron release rates and the relatively mixed effects of the potassium, aluminum, and iron release rates. The synergistic effects on potassium, sodium, and aluminum in AS were greater than those in CF, while the antagonistic effect of manganese release in AS was lower than that in CF. Therefore, increased altitude may further promote the synergistic effect of potassium, sodium, and aluminum release and alleviate the antagonistic effect of manganese in mixed litter. Finally, the initial stoichiometric ratios regulate the mixed effects of elemental release rates, with the nitrogen-related stoichiometric ratios playing the most important role. The regulation of elements release by stoichiometric ratios requires more in-depth and systematic studies, which will help us to understand the influence mechanism of decomposition more comprehensively.

Long-Term Effects of Climate and Litter Chemistry on Rates and Stable Fractions of Decomposing Scots Pine and Norway Spruce Needle Litter—A Synthesis

We have reviewed information on early-, late- and limit-value decomposition stages for litter of Norway spruce (Picea abies) and Scots pine (Pinus silvestris). This synthesis covers c 16 studies/papers made along a climatic gradient; range in mean annual temperature (MAT) from −1 to +7 °C and mean annual precipitation (MAP) from 425 to 1070 mm. Scots pine has an early stage dominated by carbohydrate decomposition and a late stage dominated by decomposition of lignin; Norway spruce has just one stage dominated by lignin decomposition. We used data for annual mass loss to identify rate-regulating factors in both stages; climate data, namely, MAT and MAP, as well as substrate properties, namely, nitrogen (N), acid unhydrolyzable residue (AUR), manganese (Mn). Early-stage decomposition for Scots pine litter was dominated positively by MAT; the late stage was dominated negatively by MAT, N, and AUR, changing with decomposition stage; there was no effect of Mn. Norway spruce litter had no early stage; decomposition in the lignin-dominated stage was mainly negative to MAP, a negative relationship to AUR and non-significant relationships to N and MAT. Mn had a positive relationship. Limit values for decomposition, namely, the accumulated mass loss at which decomposition is calculated to be zero, were related positively to Mn and AUR for Scots pine litter and negatively to AUR for Norway spruce litter. With different sets of rate-regulating factors as well as different compounds/elements related to the limit values, the decomposition patterns or pathways are different.

Micronutrients in Food Production: What Can We Learn from Natural Ecosystems?

Soil micronutrients limit crop productivity in many regions worldwide, and micronutrient deficiencies affect over two billion people globally. Microbial biofertilizers could combat these issues by inoculating arable soils with microorganisms that mobilize micronutrients, increasing their availability to crop plants in an environmentally sustainable and cost-effective manner. However, the widespread application of biofertilizers is limited by complex micronutrient–microbe–plant interactions, which reduce their effectiveness under field conditions. Here, we review the current state of seven micronutrients in food production. We examine the mechanisms underpinning microbial micronutrient mobilization in natural ecosystems and synthesize the state-of-knowledge to improve our overall understanding of biofertilizers in food crop production. We demonstrate that, although soil micronutrient concentrations are strongly influenced by soil conditions, land management practices can also substantially affect micronutrient availability and uptake by plants. The effectiveness of biofertilizers varies, but several lines of evidence indicate substantial benefits in co-applying biofertilizers with conventional inorganic or organic fertilizers. Studies of micronutrient cycling in natural ecosystems provide examples of microbial taxa capable of mobilizing multiple micronutrients whilst withstanding harsh environmental conditions. Research into the mechanisms of microbial nutrient mobilization in natural ecosystems could, therefore, yield effective biofertilizers to improve crop nutrition under global changes.

Active Iron Phases Regulate the Abiotic Transformation of Organic Carbon during Redox Fluctuation Cycles of Paddy Soil

Iron (Fe) phases are tightly linked to the preservation rather than the loss of organic carbon (OC) in soil; however, during redox fluctuations, OC may be lost due to Fe phase-mediated abiotic processes. This study examined the role of Fe phases in driving hydroxyl radical (^•OH) formation and OC transformation during redox cycles in paddy soils. Chemical probes, sequential extraction, and Mössbauer analyses showed that the active Fe species, such as exchangeable and surface-bound Fe and Fe in low-crystalline minerals (e.g., green rust-like Fe phases), predominantly regulated ^•OH formation during redox cycles. The ^•OH oxidation strongly induced the oxidative transformation of OC, which accounted for 15.1-30.8% of CO₂ production during oxygenation. Microbial processes contributed 7.3-12.1% of CO₂ production, as estimated by chemical quenching and γ-irradiation experiments. After five redox cycles, 30.1-71.9% of the OC associated with active Fe species was released, whereas 5.2-7.1% was stabilized by high-crystalline Fe phases due to the irreversible transformation of these active Fe species during redox cycles. Collectively, our findings might unveil the under-appreciated role of active Fe phases in driving more loss than conservation of OC in soil redox fluctuation events.

A Critical Review on the Multiple Roles of Manganese in Stabilizing and Destabilizing Soil Organic Matter

Manganese (Mn) is a biologically important and redox-active metal that may exert a poorly recognized control on carbon (C) cycling in terrestrial ecosystems. Manganese influences ecosystem C dynamics by mediating biochemical pathways that include photosynthesis, serving as a reactive intermediate in the breakdown of organic molecules, and binding and/or oxidizing organic molecules through organo-mineral associations. However, the potential for Mn to influence ecosystem C storage remains unresolved. Although substantial research has demonstrated the ability of Fe- and Al-oxides to stabilize organic matter, there is a scarcity of similar information regarding Mn-oxides. Furthermore, Mn-mediated reactions regulate important litter decomposition pathways, but these processes are poorly constrained across diverse ecosystems. Here, we discuss the ecological roles of Mn in terrestrial environments and synthesize existing knowledge on the multiple pathways by which biogeochemical Mn and C cycling intersect. We demonstrate that Mn has a high potential to degrade organic molecules through abiotic and microbially mediated oxidation and to stabilize organic molecules, at least temporarily, through organo-mineral associations. We outline research priorities needed to advance understanding of Mn-C interactions, highlighting knowledge gaps that may address key uncertainties in soil C predictions.

Biogeochemical Mobility of Contaminants from a Replica Radioactive Waste Trench in Response to Rainfall-Induced Redox Oscillations

Results of investigations into factors influencing contaminant mobility in a replica trench located adjacent to a legacy radioactive waste site are presented in this study. The trench was filled with nonhazardous iron- and organic matter (OM)-rich components, as well as three contaminant analogues strontium, cesium, and neodymium to examine contaminant behavior. Imposed redox/water-level oscillations, where oxygen-laden rainwater was added to the anoxic trench, resulted in marked biogeochemical changes including the removal of aqueous Fe(II) and circulation of dissolved carbon, along with shifts to microbial communities involved in cycling iron (Gallionella, Sideroxydans) and methane generation (Methylomonas, Methylococcaceae). Contaminant mobility depended upon element speciation and rainfall event intensity. Strontium remained mobile, being readily translocated under hydrological perturbations. Strong ion-exchange reactions and structural incorporation into double-layer clay minerals were likely responsible for greater retention of Cs, which, along with Sr, was unaffected by redox oscillations. Neodymium was initially immobilized within the anoxic trenches, due to either secondary mineral (phosphate) precipitation or via the chemisorption of organic- and carbonate-Nd complexes onto variably charged solid phases. Oxic rainwater intrusions altered Nd mobility via competing effects. Oxidation of Fe(II) led to partial retention of Nd within highly sorbing Fe(III)/OM phases, whereas pH decreases associated with rainwater influxes resulted in a release of adsorbed Nd to solution with both pH and OM presumed to be the key factors controlling Nd attenuation. Collectively, the behavior of simulated contaminants within this replica trench provided unique insights into trench water biogeochemistry and contaminant cycling in a redox oscillatory environment.

Influences of temperature and moisture on abiotic and biotic soil CO2 emission from a subtropical forest

BACKGROUND

Soil CO₂ efflux is considered to mainly derive from biotic activities, while potential contribution of abiotic processes has been mostly neglected especially in productive ecosystems with highly active soil biota. We collected a subtropical forest soil to sterilize for incubation under different temperature (20 and 30 °C) and moisture regimes (30%, 60 and 90% of water holding capacity), aiming to quantify contribution of abiotic and biotic soil CO₂ emission under changing environment scenarios.

MAIN FINDINGS

Results showed that abiotic processes accounted for a considerable proportion (15.6-60.0%) of CO₂ emission in such a biologically active soil under different temperature and moisture conditions, and the abiotic soil CO₂ emission was very likely to derive from degradation of soil organic carbon via thermal degradation and oxidation of reactive oxygen species. Furthermore, compared with biotically driving decomposition processes, abiotic soil CO₂ emission was less sensitive to changes in temperature and moisture, causing reductions in proportion of the abiotic to total soil CO₂ emission as temperature and moisture increased.

CONCLUSIONS

These observations highlight that abiotic soil CO₂ emission is unneglectable even in productive ecosystems with high biological activities, and different responses of the abiotic and biotic processes to environmental changes could increase the uncertainty in predicting carbon cycling.

A widespread mechanism in ectomycorrhizal fungi to access nitrogen from mineral-associated proteins

A large fraction of nitrogen (N) in forest soils is present in mineral-associated proteinaceous compounds. The strong association between proteins and minerals limits microbial accessibility to this source, which is a relatively stable reservoir of soil N. We have shown that the ectomycorrhizal (ECM) fungus Paxillus involutus can acquire N from iron oxide-associated proteins. Using tightly controlled isotopic, spectroscopic and chromatographic experiments, we demonstrated that the capacity to access N from iron oxide-associated bovine serum albumin (BSA) is shared with the ECM fungi Hebeloma cylindrosporum and Piloderma olivaceum. Despite differences in evolutionary history, growth rates, exploration types and the decomposition mechanisms of organic matter, their N acquisition mechanisms were similar to those described for P. involutus. The fungi released N from mineral-associated BSA by direct action of extracellular aspartic proteases on the mineral-associated BSA, without initial desorption of the protein. Hydrolysis was suppressed by the adsorption of proteases to minerals, but this adverse effect was counteracted by the secretion of compounds that conditioned the mineral surface. These data suggest that the enzymatic exudate-driven mechanism to access N from mineral-associated proteins is found in ECM fungi of multiple lineages and exploration types.