Homogenization and impoverishment of taxonomic and functional diversity of ants in Eucalyptus plantations

Forest disturbance increases functional diversity but decreases phylogenetic diversity of an arboreal tropical ant community

Tropical rainforest trees host a diverse arthropod fauna that can be characterised by their functional diversity (FD) and phylogenetic diversity (PD). Human disturbance degrades tropical forests, often coinciding with species invasion and altered assembly that leads to a decrease in FD and PD. Tree canopies are thought to be particularly vulnerable, but rarely investigated. Here, we studied the effects of forest disturbance on an ecologically important invertebrate group, the ants, in a lowland rainforest in New Guinea. We compared an early successional disturbed plot (secondary forest) to an old-growth plot (primary forest) by exhaustively sampling their ant communities in a total of 852 trees. We expected that for each tree community (1) disturbance would decrease FD and PD in tree-dwelling ants, mediated through species invasion. (2) Disturbance would decrease ant trait variation due to a more homogeneous environment. (3) The main drivers behind these changes would be different contributions of true tree-nesting species and visiting species. We calculated FD and PD based on a species-level phylogeny and 10 ecomorphological traits. Furthermore, we assessed by data exclusion the influence of species, which were not nesting in individual trees (visitors) or only nesting species (nesters), and of non-native species on FD and PD. Primary forests had higher ant species richness and PD than secondary forest. However, we consistently found increased FD in secondary forest. This pattern was robust even if we decoupled functional and phylogenetic signals, or if non-native ant species were excluded from the data. Visitors did not contribute strongly to FD, but they increased PD and their community weighted trait means often varied from nesters. Moreover, all community-weighted trait means changed after forest disturbance. Our finding of contradictory FD and PD patterns highlights the importance of integrative measures of diversity. Our results indicate that the tree community trait diversity is not negatively affected, but possibly even enhanced by disturbance. Therefore, the functional diversity of arboreal ants is relatively robust when compared between old-growth and young trees. However, further study with higher plot-replication is necessary to solidify and generalise our findings.

Induced drought strongly affects richness and composition of ground-dwelling ants in the eastern Amazon

Species loss in tropical regions is forecast to occur under environmental change scenarios of low precipitation. One of the main questions is how drought will affect invertebrates, a key group for ecosystem functioning. We use 1 year of data from a long-term rainwater exclusion experiment in primary Amazonian rainforest to test whether induced water stress and covarying changes in soil moisture, soil respiration, and tree species richness, diversity, size, and total biomass affected species richness and composition (relative abundance) of ground-dwelling ants. Data on ant abundance and environmental variables were collected at two sites (control and experimental) in the Eastern Amazon. Since 2002, drought has been induced in the experimental plot by excluding 50% of normal rainfall. Ant species richness in the experiment plot was reduced and some generalist species responded positively. Ant species richness also increased in the experimental plot with increasing diversity of the plant species of the leaf litter. The relative abundance of ants differed between plots. The experimental plot was characterized by a higher frequency of generalist and other species that appeared to be favored by the reduction in rainfall. Between-plot comparisons suggested loss and changes in ant species composition in tropical forests were affected by increasing dryness. These changes could ultimately lead to cascading effects on ecosystem processes and the services they mediate.

The role of morphological traits in predicting the functional ecology of arboreal and ground ants in the Cerrado-Amazon transition

There is often a vertical stratification of the vegetation in tropical forests, where each forest stratum has a unique set of environmental conditions, including marked differences in habitat heterogeneity, physical complexity, and microclimate. Additionally, many tropical forests are highly seasonal, and we need to consider the temporal variation in environmental conditions when assessing the functional aspects of their organisms. Here, we tested the hypothesis that vertical stratification and seasonality shape tropical ants' functional ecology and that there are differences in the functional trait diversity and composition between arboreal and ground-dwelling ant communities. We collected ants in the arboreal and ground strata in the rainy and dry seasons in six different areas, measuring seven morphological traits to characterize their functional ecology and diversity. Irrespective of the season, we found a distinct functional composition between arboreal and ground-dwelling ants and a higher functional richness on the ground. However, ground ants were more functionally redundant than arboreal ants. The differences in functional richness and redundancy between ant inhabiting strata and season could also be observed in the community-weighted mean traits: arboreal and ground ant traits can be distinguished in Weber's length, mandible length, eye length, and eye position on the head capsule. The differences in these functional traits are mainly related to the ants' feeding habits and the complexity of their foraging substrates. Overall, by providing the first systematic comparison of continuous traits between arboreal and ground-dwelling ants, our study opens new investigation paths, indicating important axes of functional diversification of tropical ants.

Spatial patterns of macrobenthos taxonomic and functional diversity throughout the ecotones from river to lake: A case study in Northern China

Macrobenthos taxonomic and functional diversity are key indicators of ecosystem health. River–lake ecotones are key macrobenthos habitats. However, we don’t fully understand macrobenthos biodiversity patterns in these ecotones. We studied water environment, sediment heavy metal contents, and macrobenthos community, which we sampled simultaneously from 29 sampling sites along the Fu River–Baiyangdian Lake gradient in Northern China with five field surveys from 2018 to 2019. Six trait classes resolved into 25 categories were allocated to macrobenthos through a binary coding system. We used the RLQ framework (R, environmental variables; L, species of taxa; Q, traits) and fourth-corner analyses to evaluate the relationship between environmental variables and macrobenthos traits. Finally, we carried out variance partitioning to assess the contributions of environmental variables to variation of macrobenthos diversities. As the results, TN and TP contents in the river and lake mouths were lower than those in the adjacent river and lake, indicating that the river–lake ecotones played a role in purifying the water and buffering pollution. High taxonomic diversity of macrobenthos in the lake mouth and the presence of unique taxa in the two ecotones revealed edge effects, but the macrobenthos abundance and biomass were extremely low compared with those in the adjacent river and lake. We found no significant correlation between the taxonomic and functional diversity indices in the river and lake mouths. Water depth, water transparency, TN, and TP were the main water environmental drivers of macrobenthos taxonomic and functional diversity, explaining up to 45.5% and 56.2% of the variation, respectively. Sediment Cd, Cr, Cu, Pb, and Zn contents explained 15.1% and 32.8%, respectively, of macrobenthos taxonomic and functional diversity. Our results suggest that functional diversity approaches based on biological traits can complement taxonomic approaches in river–lake ecotones. Furthermore, improving water depth, transparency, eutrophication, and heavy metal pollution will improve macrobenthos diversity in these ecotones and maintain ecosystem health.

Biodiversity and Ecosystem Functions Across an Afro-Tropical Forest Biodiversity Hotspot

Ecosystem functions are important for the resilience of ecosystems and for human livelihood quality. Intact habitats and heterogeneous environments are known to provide a large variety of ecosystem functions. Natural and near natural ecosystems surrounding agroecosystems may positively support crop growing conditions and thus facilitate crop yields. In contrast, monocultures of crops and trees as well as degraded landscapes are known to provide less ecosystem functions. The Taita Hills in southern Kenya are part of the Eastern Afromontane biodiversity hotspot, and represent a habitat mosaic consisting of largely intact cloud forests, agroecosystems and plantations of exotic trees. In this region, subsistence farmers rely on ecosystem functions provided by natural ecosystems. In this study, we analyze three proxies of biodiversity and ecosystem functions, namely pollination activity, predation rates, and arthropod diversity in tree canopies. We set study plots along forest-agroecosystem-gradients, covering cloud forest, forest edge and agricultural fields, as well as plantations of exotic trees. We assessed environmental conditions, to evaluate the extent to which local environmental factors influence ecosystem functions. Based on these data we investigate potential spill over of ecosystem functions from forest into adjoining agroecosystems. For predation rates we found trends of spill over effects from forest interior into the agroecosystem. The expression of ecosystem functions differed among habitat types, with comparatively high predation rates in the forest, high pollinator activity in the open agricultural areas, and highest arthropod diversity along the forest edge. Eucalyptus plantations showed reduced ecosystem functions and lowest arthropod diversity. Local factors such as vegetation cover and flower supply positively influence pollinator activity. Our study show that natural ecosystems may positively contribute ecosystem functions such as predation, while the homogenization of biota through planting of invasive exotic tree species significantly reduce biodiversity and ecosystem functions. Transition habitats such as forest margins, and small-scale ecological enhancement positively influences biodiversity and ecosystem functions.

Assessing assemblage-wide mammal responses to different types of habitat modification in Amazonian forests

Tropical forests are being heavily modified by varying intensities of land use ranging from structural degradation to complete conversion. While ecological responses of vertebrate assemblages to habitat modification are variable, such understanding is critical to appropriate conservation planning of anthropogenic landscapes. We assessed the responses of medium/large-bodied mammal assemblages to the ecological impacts of reduced impact logging, secondary regrowth, and eucalyptus and oil palm plantations in Eastern Brazilian Amazonia. We used within-landscape paired baseline-treatment comparisons to examine the impact of different types of habitat modification in relation to adjacent primary forest. We examined assemblage-wide metrics including the total number of species, number of primary forest species retained in modified habitats, abundance, species composition, and community integrity. We ranked all types of habitat modification along a gradient of assemblage-wide impact intensity, with oil palm and eucalyptus plantations exerting the greatest impact, followed by secondary regrowth, and selectively logging. Selectively-logged and secondary forests did not experience discernible biodiversity loss, except for the total number of primary forest species retained. Secondary forests further experienced pronounced species turnover, with loss of community integrity. Considering the biodiversity retention capacity of anthropogenic habitats, this study reinforces the landscape-scale importance of setting aside large preserved areas.

Different land-use types equally impoverish but differentially preserve grassland species and functional traits of spider assemblages

Land-use change is one of the major drivers of biodiversity loss by introducing environmental modifications, which excludes native species unable to adapt to the novel conditions. Grasslands are among the most threatened biomes; understanding the influence of different land-use types on native species is crucial to achieving sustainable management policies. We hypothesized that land-use types that partially conserve the original vegetation cover would show higher taxonomic and functional diversity and similarity with native assemblages than land-use types that replace the original vegetation cover. We compared the taxonomic and functional alpha and beta diversity of spider assemblages between soybean crops, eucalypt plantations, and cattle fields with seminatural grasslands. Through null models, we assessed the standardized effect sizes to test differences in the strength of environmental filtering among land-use types. Environmental changes introduced by different land-use types resulted in assemblages differentiated in species and trait composition, taxonomically and functionally impoverished with respect to seminatural grasslands. All land-use types drove species replacement and trait loss and replacement of grassland spiders. Each land-use showed a characteristic species and trait composition. Most of the grassland traits were not lost but were under or over-represented according to the land-use type. Only in soybean crops the formation of spider communities would be mainly driven by environmental filtering. Changes in land-use decreased species diversity and modified the composition of spider species and functional traits leading to differentiated spider assemblages. As spider species and traits varied among land-uses, a mitigation measure against grasslands biodiversity loss could be the development of productive landscapes with a mosaic of land-use types, as each of them would provide microhabitats for species with different requirements. Because land-use types mainly led to the rearrangement of grassland functional trait values, most of spider functions might be conserved in mosaics of land-use types.

Erosion of global functional diversity across the tree of life

Although one-quarter of plant and vertebrate species are threatened with extinction, little is known about the potential effect of extinctions on the global diversity of ecological strategies. Using trait and phylogenetic information for more than 75,000 species of vascular plants, mammals, birds, reptiles, amphibians, and freshwater fish, we characterized the global functional spectra of each of these groups. Mapping extinction risk within these spectra showed that larger species with slower pace of life are universally threatened. Simulated extinction scenarios exposed extensive internal reorganizations in the global functional spectra, which were larger than expected by chance for all groups, and particularly severe for mammals and amphibians. Considering the disproportionate importance of the largest species for ecological processes, our results emphasize the importance of actions to prevent the extinction of the megabiota.

Environmental heterogeneity and population density affect the functional diversity of personality traits in small mammal populations

Understanding factors affecting the functional diversity of ecological communities is an important goal for ecologists and conservationists. Previous work has largely been conducted at the community level; however, recent studies have highlighted the critical importance of considering intraspecific functional diversity (i.e. the functional diversity of phenotypic traits among conspecifics). Further, a major limitation of existing literature on this topic is the lack of empirical studies examining functional diversity of behavioural phenotypes-including animal personalities. This is a major shortcoming because personality traits can affect the fitness of individuals, and the composition of personalities in a population can have important ecological consequences. Our study aims to contribute to filling this knowledge gap by investigating factors affecting the functional diversity of personality traits in wild animal populations. Specifically, we predicted that the richness, divergence and evenness associated with personality traits would be impacted by key components of forest structure and would vary between contrasting forest types. To achieve our objective we conducted a fully replicated large-scale field experiment over a 4 year period using small mammal populations as a model system. We found that greater heterogeneity in the cover of shrubs, coarse woody debris and canopy cover was associated with a greater richness, lower divergence and lower evenness in personality traits. Greater population density was associated with greater functional richness and lower functional divergence and evenness of personality traits. To maintain a behaviourally diverse population and its associated functions, managers may promote heterogeneity in vegetation and increased population density, which we found to be the most important determinants driving functional diversity of personality traits.

Gaps in terrestrial soundscape research: It's time to focus on tropical wildlife

There has been a body of research examining the sounds produced in landscapes. These sounds are commonly defined as soundscapes, however, the term is often used in different contexts. To understand the various meanings attributed to soundscapes, we identified how soundscapes are represented in the scientific literature and identified current knowledge gaps in soundscape research focusing on terrestrial environments. We conducted a quantitative review of published papers with the keyword soundscape available at Web of Science and Scopus databases. A total of 1309 abstracts and a subset of about 5% (N = 68) complete papers and reviews published from 1985 to 2017 were read and analysed, identifying types of sound, types of environment and focal species studied, as well as study regions and climates. By identifying the current focus of research, we also identified gaps and research opportunities. Research was biased towards temperate regions, terrestrial environments, and the impacts on humans in urban areas. Although most of the world's biodiversity is concentrated in tropical wilderness areas, these regions had fewer studies attributed to them. Given the importance of tropical landscapes for biodiversity conservation, we strongly suggest that more research should be undertaken in the tropics, with a particular focus on wildlife in these regions. Furthermore, soundscape research (methods and tools) should increasingly target the anthropogenic impacts on wildlife, including behavioural and physiological changes, alongside the current focus on human-sound interactions and the approach used by bioacoustics methods.

Trait probability density (TPD): measuring functional diversity across scales based on TPD with R

Functional diversity (FD) has the potential to address many ecological questions, from impacts of global change on biodiversity to ecological restoration. There are several methods estimating the different components of FD. However, most of these methods can only be computed at limited spatial scales and cannot account for intraspecific trait variability (ITV), despite its significant contribution to FD. Trait probability density (TPD) functions (which explicitly account for ITV) reflect the probabilistic nature of niches. By doing so, the TPD approach reconciles existing methods for estimating FD within a unifying framework, allowing FD to be partitioned seamlessly across multiple scales (from individuals to species, and from local to global scales), and accounting for ITV. We present methods to estimate TPD functions at different spatial scales and probabilistic implementations of several FD concepts, including the primary components of FD (functional richness, evenness, and divergence), functional redundancy, functional rarity, and solutions to decompose beta FD into nested and unique components. The TPD framework has the potential to unify and expand analyses of functional ecology across scales, capturing the probabilistic and multidimensional nature of FD. The R package TPD (https://CRAN.R-project.org/package=TPD) will allow users to achieve more comparative results across regions and case studies.

Human-modified landscapes alter mammal resource and habitat use and trophic structure

The broad negative consequences of habitat degradation on biodiversity have been studied, but the complex effects of natural-agricultural landscape matrices remain poorly understood. Here we used stable carbon and nitrogen isotopes to detect changes in mammal resource and habitat use and trophic structure between preserved areas and human-modified landscapes (HMLs) in a biodiversity hot spot in South America. We classified mammals into trophic guilds and compared resource use (in terms of C3- and C4-derived carbon), isotopic niches, and trophic structure across the 2 systems. In HMLs, approximately one-third of individuals fed exclusively on items from the agricultural matrix (C4), while in preserved areas, ∼68% depended on forest remnant resources (C3). Herbivores, omnivores, and carnivores were the guilds that most incorporated C4 carbon in HMLs. Frugivores maintained the same resource use between systems (C3 resources), while insectivores showed no significant difference. All guilds in HMLs except insectivores presented larger isotopic niches than those in preserved areas. We observed a complex trophic structure in preserved areas, with increasing δ15N values from herbivores to insectivores and carnivores, differing from that in HMLs. This difference is partially explained by species loss and turnover and mainly by the behavioral plasticity of resilient species that use nitrogen-enriched food items. We concluded that the landscape cannot be seen as a habitat/nonhabitat dichotomy because the agricultural landscape matrix in HMLs provides mammal habitat and opportunities for food acquisition. Thus, favorable management of the agricultural matrix and slowing the conversion of forests to agriculture are important for conservation in this region.

Trait-based ecology of terrestrial arthropods

In focusing on how organisms' generalizable functional properties (traits) interact mechanistically with environments across spatial scales and levels of biological organization, trait-based approaches provide a powerful framework for attaining synthesis, generality and prediction. Trait-based research has considerably improved understanding of the assembly, structure and functioning of plant communities. Further advances in ecology may be achieved by exploring the trait-environment relationships of non-sessile, heterotrophic organisms such as terrestrial arthropods, which are geographically ubiquitous, ecologically diverse, and often important functional components of ecosystems. Trait-based studies and trait databases have recently been compiled for groups such as ants, bees, beetles, butterflies, spiders and many others; however, the explicit justification, conceptual framework, and primary-evidence base for the burgeoning field of 'terrestrial arthropod trait-based ecology' have not been well established. Consequently, there is some confusion over the scope and relevance of this field, as well as a tendency for studies to overlook important assumptions of the trait-based approach. Here we aim to provide a broad and accessible overview of the trait-based ecology of terrestrial arthropods. We first define and illustrate foundational concepts in trait-based ecology with respect to terrestrial arthropods, and justify the application of trait-based approaches to the study of their ecology. Next, we review studies in community ecology where trait-based approaches have been used to elucidate how assembly processes for terrestrial arthropod communities are influenced by niche filtering along environmental gradients (e.g. climatic, structural, and land-use gradients) and by abiotic and biotic disturbances (e.g. fire, floods, and biological invasions). We also review studies in ecosystem ecology where trait-based approaches have been used to investigate biodiversity-ecosystem function relationships: how the functional diversity of arthropod communities relates to a host of ecosystem functions and services that they mediate, such as decomposition, pollination and predation. We then suggest how future work can address fundamental assumptions and limitations by investigating trait functionality and the effects of intraspecific variation, assessing the potential for sampling methods to bias the traits and trait values observed, and enhancing the quality and consolidation of trait information in databases. A roadmap to guide observational trait-based studies is also presented. Lastly, we highlight new areas where trait-based studies on terrestrial arthropods are well positioned to advance ecological understanding and application. These include examining the roles of competitive, non-competitive and (multi-)trophic interactions in shaping coexistence, and macro-scaling trait-environment relationships to explain and predict patterns in biodiversity and ecosystem functions across space and time. We hope this review will spur and guide future applications of the trait-based framework to advance ecological insights from the most diverse eukaryotic organisms on Earth.

Habitats shape taxonomic and functional composition of Neotropical ant assemblages

Determining assembly rules of co-occurring species persists as a fundamental goal in community ecology. At local scales, the relative importance of environmental filtering vs. competitive exclusion remains a subject of debate. In this study, we assessed the relative importance of habitat filtering and competition in structuring understory ant communities in tropical forests of French Guiana. Leaf-litter ants were collected using pitfall and Winkler traps across swamp, slope and plateau forests near Saül, French Guiana. We used a combination of univariate and multivariate analyses to evaluate trait response of ants to habitat characteristics. Null model analyses were used to investigate the effects of habitat filtering and competitive interactions on community assembly at the scale of assemblages and sampling points, respectively. Swamp forests presented a much lower taxonomic and functional richness compared to slope and plateau forests. Furthermore, marked differences in taxonomic and functional composition were observed between swamp forests and slope or plateau forests. We found weak evidence for competitive exclusion based on null models. Nevertheless, the contrasting trait composition observed between habitats revealed differences in the ecological attributes of the species in the different forest habitats. Our analyses suggest that competitive interactions may not play an important role in structuring leaf-litter ant assemblages locally. Rather, habitats are responsible for driving both taxonomic and functional composition of ant communities.