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Cunning R, Bay RA, Gillette P, Baker AC, Traylor-Knowles N. Comparative analysis of the Pocillopora damicornis genome highlights role of immune system in coral evolution. Sci Rep 2018; 8:16134. [PMID: 30382153 PMCID: PMC6208414 DOI: 10.1038/s41598-018-34459-8] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2018] [Accepted: 10/19/2018] [Indexed: 12/22/2022] Open
Abstract
Comparative analysis of the expanding genomic resources for scleractinian corals may provide insights into the evolution of these organisms, with implications for their continued persistence under global climate change. Here, we sequenced and annotated the genome of Pocillopora damicornis, one of the most abundant and widespread corals in the world. We compared this genome, based on protein-coding gene orthology, with other publicly available coral genomes (Cnidaria, Anthozoa, Scleractinia), as well as genomes from other anthozoan groups (Actiniaria, Corallimorpharia), and two basal metazoan outgroup phlya (Porifera, Ctenophora). We found that 46.6% of P. damicornis genes had orthologs in all other scleractinians, defining a coral ‘core’ genome enriched in basic housekeeping functions. Of these core genes, 3.7% were unique to scleractinians and were enriched in immune functionality, suggesting an important role of the immune system in coral evolution. Genes occurring only in P. damicornis were enriched in cellular signaling and stress response pathways, and we found similar immune-related gene family expansions in each coral species, indicating that immune system diversification may be a prominent feature of scleractinian coral evolution at multiple taxonomic levels. Diversification of the immune gene repertoire may underlie scleractinian adaptations to symbiosis, pathogen interactions, and environmental stress.
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Affiliation(s)
- R Cunning
- Department of Marine Biology and Ecology, University of Miami Rosenstiel School of Marine and Atmospheric Science, 4600 Rickenbacker Causeway, Miami, FL, 33149, USA. .,Daniel P. Haerther Center for Conservation and Research, John G. Shedd Aquarium, 1200 South Lake Shore Drive, Chicago, IL, 60605, USA.
| | - R A Bay
- Department of Evolution and Ecology, University of California Davis, One Shields Ave, Davis, CA, 95616, USA
| | - P Gillette
- Department of Marine Biology and Ecology, University of Miami Rosenstiel School of Marine and Atmospheric Science, 4600 Rickenbacker Causeway, Miami, FL, 33149, USA
| | - A C Baker
- Department of Marine Biology and Ecology, University of Miami Rosenstiel School of Marine and Atmospheric Science, 4600 Rickenbacker Causeway, Miami, FL, 33149, USA
| | - N Traylor-Knowles
- Department of Marine Biology and Ecology, University of Miami Rosenstiel School of Marine and Atmospheric Science, 4600 Rickenbacker Causeway, Miami, FL, 33149, USA.
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Cunning R, Silverstein RN, Baker AC. Investigating the causes and consequences of symbiont shuffling in a multi-partner reef coral symbiosis under environmental change. Proc Biol Sci 2016; 282:20141725. [PMID: 26041354 DOI: 10.1098/rspb.2014.1725] [Citation(s) in RCA: 83] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023] Open
Abstract
Dynamic symbioses may critically mediate impacts of climate change on diverse organisms, with repercussions for ecosystem persistence in some cases. On coral reefs, increases in heat-tolerant symbionts after thermal bleaching can reduce coral susceptibility to future stress. However, the relevance of this adaptive response is equivocal owing to conflicting reports of symbiont stability and change. We help reconcile this conflict by showing that change in symbiont community composition (symbiont shuffling) in Orbicella faveolata depends on the disturbance severity and recovery environment. The proportion of heat-tolerant symbionts dramatically increased following severe experimental bleaching, especially in a warmer recovery environment, but tended to decrease if bleaching was less severe. These patterns can be explained by variation in symbiont performance in the changing microenvironments created by differentially bleached host tissues. Furthermore, higher proportions of heat-tolerant symbionts linearly increased bleaching resistance but reduced photochemical efficiency, suggesting that any change in community structure oppositely impacts performance and stress tolerance. Therefore, even minor symbiont shuffling can adaptively benefit corals, although fitness effects of resulting trade-offs are difficult to predict. This work helps elucidate causes and consequences of dynamism in symbiosis, which is critical to predicting responses of multi-partner symbioses such as O. faveolata to environmental change.
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Affiliation(s)
- R Cunning
- Department of Marine Biology and Ecology, Rosenstiel School of Marine and Atmospheric Science, University of Miami, 4600 Rickenbacker Causeway, Miami, FL 33149, USA
| | - R N Silverstein
- Department of Marine Biology and Ecology, Rosenstiel School of Marine and Atmospheric Science, University of Miami, 4600 Rickenbacker Causeway, Miami, FL 33149, USA Miami Waterkeeper, 12568 N. Kendall Dr., Miami, FL 33185, USA
| | - A C Baker
- Department of Marine Biology and Ecology, Rosenstiel School of Marine and Atmospheric Science, University of Miami, 4600 Rickenbacker Causeway, Miami, FL 33149, USA Wildlife Conservation Society, Marine Program, 2300 Southern Boulevard, Bronx, NY 10460, USA
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Cunning R, Vaughan N, Gillette P, Capo TR, Matté JL, Baker AC. Dynamic regulation of partner abundance mediates response of reef coral symbioses to environmental change. Ecology 2015; 96:1411-20. [PMID: 26236853 DOI: 10.1890/14-0449.1] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Regulating partner abunclance may allow symmotic organisms to mediate interaction outcomes, facilitating adaptive responses to environmental change. To explore the capacity for-adaptive regulation in an ecologically important endosymbiosis, we studied the population dynamics of symbiotic algae in reef-building corals under different abiotic contexts. We found high natural variability in symbiont abundance in corals across reefs, but this variability converged to different symbiont-specific abundances when colonies were maintained under constant conditions. When conditions changed seasonally, symbiont abundance readjusted to new equilibria. We explain these patterns using an a priori model of symbiotic costs and benefits to the coral host, which shows that the observed changes in symbiont abundance are consistent with the maximization of interaction benefit under different environmental conditions. These results indicate that, while regulating symbiont abundance helps hosts sustain maximum benefit in a dynamic environment, spatiotemporal variation in abiotic factors creates a broad range of symbiont abundances (and interaction outcomes) among corals that may account for observed natural variability in performance (e.g., growth rate) and stress tolerance (e.g., bleaching susceptibility). This cost or benefit framework provides a new perspective on the dynamic regulation of reef coral symbioses and illustrates that the dependence of interaction outcomes on biotic and abiotic contexts may be important in understanding how diverse mutualisms respond to environmental change.
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Serrano X, Baums IB, O'Reilly K, Smith TB, Jones RJ, Shearer TL, Nunes FLD, Baker AC. Geographic differences in vertical connectivity in the Caribbean coralMontastraea cavernosadespite high levels of horizontal connectivity at shallow depths. Mol Ecol 2014; 23:4226-40. [DOI: 10.1111/mec.12861] [Citation(s) in RCA: 106] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2013] [Revised: 07/04/2014] [Accepted: 07/11/2014] [Indexed: 01/02/2023]
Affiliation(s)
- X. Serrano
- Department of Marine Biology and Ecology; Rosenstiel School of Marine and Atmospheric Science; University of Miami; 4600 Rickenbacker Causeway Miami FL 33149 USA
| | - I. B. Baums
- Department of Biology; The Pennsylvania State University; 208 Mueller Laboratory University Park PA 16802 USA
| | - K. O'Reilly
- Department of Marine Biology and Ecology; Rosenstiel School of Marine and Atmospheric Science; University of Miami; 4600 Rickenbacker Causeway Miami FL 33149 USA
| | - T. B. Smith
- Center for Marine and Environmental Studies; University of the Virgin Islands; #2 John Brewer's Bay St. Thomas USVI 00802-9990 USA
| | - R. J. Jones
- Australian Institute of Marine Science; The UWA Oceans Institute; 35 Stirling Highway Crawley WA 6009 Australia
| | - T. L. Shearer
- School of Biology; Georgia Institute of Technology; 310 Ferst Dr. Atlanta GA 30332 USA
| | - F. L. D. Nunes
- Laboratory of Artificial and Natural Evolution; Department of Genetics & Evolution; University of Geneva; Sciences III, 30 quai Ernest Ansermet 1211 Geneva 4 Switzerland
- Laboratoire des Sciences de l'Environnement Marin; Institut Universitaire Européen de la Mer; Université de Bretagne Occidentale; Technopole Brest Iroise 29280 Plouzané France
| | - A. C. Baker
- Department of Marine Biology and Ecology; Rosenstiel School of Marine and Atmospheric Science; University of Miami; 4600 Rickenbacker Causeway Miami FL 33149 USA
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Toque C, Milodowski AE, Baker AC. The corrosion of depleted uranium in terrestrial and marine environments. J Environ Radioact 2014; 128:97-105. [PMID: 24315120 DOI: 10.1016/j.jenvrad.2013.01.001] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2009] [Revised: 01/03/2013] [Accepted: 01/03/2013] [Indexed: 06/02/2023]
Abstract
Depleted Uranium alloyed with titanium is used in armour penetrating munitions that have been fired in a number of conflict zones and testing ranges including the UK ranges at Kirkcudbright and Eskmeals. The study presented here evaluates the corrosion of DU alloy cylinders in soil on these two UK ranges and in the adjacent marine environment of the Solway Firth. The estimated mean initial corrosion rates and times for complete corrosion range from 0.13 to 1.9 g cm(-2) y(-1) and 2.5-48 years respectively depending on the particular physical and geochemical environment. The marine environment at the experimental site was very turbulent. This may have caused the scouring of corrosion products and given rise to a different geochemical environment from that which could be easily duplicated in laboratory experiments. The rate of mass loss was found to vary through time in one soil environment and this is hypothesised to be due to pitting increasing the surface area, followed by a build up of corrosion products inhibiting further corrosion. This indicates that early time measurements of mass loss or corrosion rate may be poor indicators of late time corrosion behaviour, potentially giving rise to incorrect estimates of time to complete corrosion. The DU alloy placed in apparently the same geochemical environment, for the same period of time, can experience very different amounts of corrosion and mass loss, indicating that even small variations in the corrosion environment can have a significant effect. These effects are more significant than other experimental errors and variations in initial surface area.
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Affiliation(s)
- C Toque
- Defence Science and Technology Laboratory, MBG23, Institute of Naval Medicine, Crescent Road, Alverstoke, Gosport, Hampshire PO12 2DL, UK
| | - A E Milodowski
- British Geological Survey, British Geological Survey, Kingsley Dunham Centre, Keyworth, Nottingham NG12 5GG, United Kingdom
| | - A C Baker
- Defence Science and Technology Laboratory, i-SAT F, 102, Building 5, DSTL Porton Down, Salisbury, Wiltshire SP5 OJQ, UK.
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Hume B, D'Angelo C, Burt J, Baker AC, Riegl B, Wiedenmann J. Corals from the Persian/Arabian Gulf as models for thermotolerant reef-builders: prevalence of clade C3 Symbiodinium, host fluorescence and ex situ temperature tolerance. Mar Pollut Bull 2013; 72:313-22. [PMID: 23352079 DOI: 10.1016/j.marpolbul.2012.11.032] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2012] [Revised: 11/09/2012] [Accepted: 11/17/2012] [Indexed: 05/03/2023]
Abstract
Corals in the Arabian/Persian Gulf endure summer temperatures of up to 36°C, making them ideal subjects to study the mechanisms underlying thermal tolerance. Unexpectedly, we found the "generalist" Symbiodinium clade C3 to be the prevalent symbiont among seven coral species from Abu Dhabi (UAE) waters. Moreover, C3 represented the only dominant symbiont type in Porites spp. from this region. The "thermotolerant" symbionts D1a and C15 were not encountered, indicating that the association with these symbionts cannot be the sole reason for the heat tolerance of Gulf corals. The association of Porites lobata with specific symbiont types (C3 vs. C15) in samples from habitats with very different temperature regimes (Abu Dhabi vs. Fiji) remained unaffected by laboratory culture. During temperature stress experiments specimens from both locations strongly downregulated green fluorescent protein (GFP)-like pigments. However, the Abu Dhabi samples were less prone to bleaching and showed lower mortality.
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Affiliation(s)
- B Hume
- National Oceanography Centre, Southampton (NOCS), University of Southampton, European Way, SO143ZH Southampton, UK
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Abstract
During the first half of the twentieth century, radium, mixed with other components, was used to luminise many items, including watches, clocks, dials and meters. On many sites, and in particular MoD sites, luminised instruments and paint were disposed of by burning and burial. This paper presents a review of the potential for radium from such sites to migrate in the environment. The most likely mechanisms of migration of radium from former luminising sites in the UK are surface-water erosion and transport, and the action of animals and people. Plant uptake or rainsplash followed by cropping of the plants is another possible mechanism, but the extent of impact is uncertain. The migration of significant quantities of radium through soils or rocks, or due to landsliding or wind transport, is considered to be of minimal importance to most UK sites. A low pH, high salinity (in particular of group II metals) or reducing groundwater would need to be present for migration through soils/rocks to occur and such conditions are unlikely to be present in most shallow aquifer systems in the UK. To reduce the potential for migration to occur it is recommended that luminising wastes at ground surface are removed or covered, that controls are put in place to limit animal activity and that human entry to former luminising sites is restricted.
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Affiliation(s)
- A C Baker
- Dstl Environmental Sciences, Porton Down, Salisbury, Wiltshire SP4 0JQ, UK.
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Affiliation(s)
- A C Baker
- Wildlife Conservation Society, Osborn Laboratories of Marine Science, Brooklyn, New York 11224, USA.
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Abstract
A new method of treatment for infertility caused by polycystic ovarian syndrome (PCOS) using thermal lesion formation by high intensity ultrasound has been suggested. Current options for PCOS therapy and the achievements of focused ultrasound surgery technique are reviewed and discussed. A prototype of a low-cost commercial device for the treatment of PCOS has been designed and tested to prove the feasibility of the method. A transducer with curvature radius of 36 mm and aperture diameter of 36 mm, operating at 0.97 MHz, was designed and tested. It provided a maximum acoustic power output of 180 W. Well-defined tissue damage was obtained within 10 s in a pig's liver in vitro at 3 cm depth within an area 5 mm in diameter and 12 mm in length without damaging the surrounding tissue. Evaluation of the size of the lesions produced at different frequencies, sonication times and output power has been carried out by visual inspection of the colour changes in cut tissue sections. Results demonstrate that a surgical tool based on the method suggested should be feasible and warrants further investigation.
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Affiliation(s)
- L O Gostin
- Georgetown University Law Center, Washington, DC 20001, USA
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11
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Abstract
Knowledge of the spatial distribution of intensity loss from an ultrasonic beam is vital to bioeffect predictions such as heating and streaming. A method for calculating the distribution of intensity loss over a finite-amplitude ultrasonic beam is described. The technique demonstrates that the location of peak intensity loss varies considerably with drive level for a plane circular source, as does the overall distribution of intensity loss across the beam. The effects are shown to be less pronounced but still significant for a focused source.
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Affiliation(s)
- A C Baker
- School of Physics, University of Bath, UK
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12
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Ward B, Baker AC, Humphrey VF. Nonlinear propagation applied to the improvement of resolution in diagnostic medical ultrasound. J Acoust Soc Am 1997; 101:143-154. [PMID: 9000731 DOI: 10.1121/1.417977] [Citation(s) in RCA: 93] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Medical B-mode scanners operating under conditions typically encountered during clinical work produce ultrasonic wave fields that undergo nonlinear distortion. In general, the resulting harmonic beams are narrower and have lower sidelobe levels than the fundamental beam, making them ideal for imaging purposes. This work demonstrates the feasibility of nonlinear harmonic imaging in medical scanners using a simple broadband imaging arrangement in water. The ultrasonic system comprises a 2.25-MHz circular transducer with a diameter of 38 mm, a membrane hydrophone, also with a diameter of 38 mm, and a polymer lens with a focal length of 262 mm. These components are arranged coaxially giving an imaging geometry similar to that used in many commercial B-scanners, but with a receiver bandwidth sufficient to record the first four harmonics. A series of continuous wave and pulse-echo measurements are performed on a wire phantom to give 1-D transverse pressure profiles and 2-D B-mode images, respectively. The reflected beamwidths wn decrease as wn/W1 = 1/n0.78, where n is the harmonic number, and the reflected sidelobe levels fall off quickly with increasing n. In imaging terms, these effects correspond to a large improvement in lateral resolution and signal-to-clutter ratio for the higher harmonics.
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Affiliation(s)
- B Ward
- School of Physics, University of Bath, Claverton Down, United Kingdom
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13
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Stock WD, Wienand KT, Baker AC. Impacts of invading N 2-fixing Acacia species on patterns of nutrient cycling in two Cape ecosystems: evidence from soil incubation studies and 15N natural abundance values. Oecologia 1995; 101:375-382. [PMID: 28307060 DOI: 10.1007/bf00328825] [Citation(s) in RCA: 144] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/1994] [Accepted: 10/16/1994] [Indexed: 10/26/2022]
Abstract
This study examines the impacts of woody, N2-fixing invasive Acacia spp. on the patterns of nutrient cycling in two invaded ecosystems of differing nutrient status in the Cape floristic region. Patterns of soil nutrient mineralization were measured by a field incubation method while the significance of the fixation process in altering nutrient cycling was assessed by the δ15N natural abundance technique. The results confirm earlier reports that invasion by woody shrubs results in organic matter and nutrient enrichment of surface soils of both ecosystems. However, patterns of nutrient availability (phosphorus and nitrogen) were not necessarily enhanced. In the more fertile strandveld both phosphorus and nitrogen (significant at P<0.10) showed trends towards enhanced annual mineralization rates upon invasion, while in the low nutrient fynbos system only phosphorus followed this trend. It is unclear whether this differential response is a consequence of plant- or soil-derived feedbacks on the decomposition processes in each system. The δ15N values of the soils from the invaded sites of both ecosystems indicated a strong influence of the alien species on the soil nitrogen component. However, as with other studies of natural ecosystems, the contribution of nitrogen from fixation could not be readily quantified with the δ15N natural abundance method because of problems in selecting suitable non-N2-fixing reference plants. A technique of disrupting nodule structure and function, by fumigation with O2, to obtain the δ15N value of a non-N2-fixing speciment of the study species was tried and found to overcome some of the problems associated with the lack of suitable reference plants. With this technique it was possible to detect the almost total dependence of A. saligna on N2-fixation in the fynbos soils with their low nitrogen mineralization rates. In the strandveld ecosystem with much higher soil nitrogen release rates A. cyclops was only partly dependent on fixation (about half) for its nitrogen. The nutrient enrichment of both ecosystems and trends towards enhanced rates of nutrient mineralization could have profound implications on the long-term success of alien invader clearing operations and the restoration of the indigenous flora at these sites.
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Affiliation(s)
- W D Stock
- Department of Botany, University of Cape Town, 7700, Rondebosch, South Africa
| | - K T Wienand
- Department of Botany, University of Cape Town, 7700, Rondebosch, South Africa
| | - A C Baker
- Department of Botany, University of Cape Town, 7700, Rondebosch, South Africa
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Baker AC. Issues of human rights and HIV. Guest commentary. AIDSlink 1994:6. [PMID: 12346134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/26/2023]
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Abstract
Clinicians have no yardstick to help them choose the most efficient lithotriptor. Their leading priority is a system allowing complete disintegration of the stone with the minimum number of shocks and a low re-treatment rate. One of the prerequisites of this system is a powerful shock wave generator. "Power" is as yet ill defined in lithotripsy. Therefore clinicians' choice depends upon other factors. Acoustic output measurements were recorded on 3 commercial lithotriptors representing the 3 main shock wave generating systems. These were the Dornier MPL 9000 (standard and X-155 electrodes), the Siemens (Lithostar, Lithostar Plus and System C) and the Wolf Piezolith 2300. The shock wave measurements were correlated to the capability of the lithotriptors to disintegrate standard stone models in vitro. Two factors were identified. The pulse intensity integral in the focus and the size of the focal zone proved to be the most important factors to assess and compare the efficacy or "power" of different lithotriptors. Together they can help clinicians to identify and choose the most efficient shock wave generating systems.
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Affiliation(s)
- S F Mishriki
- Lithotriptor Unit, Southmead Hospital, Westbury-on-Trym, Bristol
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16
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Abstract
To determine the effect of the presence of a spouse on the stroke patient's adaptation, a retrospective chart review of stroke patients who had completed rehabilitation was conducted. The convenience sample comprised 67 stroke patients of a family practice service who received rehabilitation at Pitt County Memorial Hospital Rehabilitation Center in Greenville, NC, over a 45-month period. Roy's Adaptation Model was the theoretical framework for the inquiry. The Barthel Index measured the functioning level, or adaptation, of the patients on discharge from rehabilitation. It was hypothesized that patients who had a stroke and completed a rehabilitation program would achieve a higher level of adaptation if they had a spouse than would comparable patients without a spouse. This hypothesis was supported by the findings; the average Barthel Index score on discharge was 7.5 points higher in patients who had a spouse (Wilcoxon chi-square = 4.17, p < .05). The implications for nurses are presented.
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Lamont RF, Neave S, Baker AC, Steer PJ. Intrauterine pressures in labours induced by amniotomy and oxytocin or vaginal prostaglandin gel compared with spontaneous labour. Int J Gynaecol Obstet 1992. [DOI: 10.1016/0020-7292(92)90743-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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18
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Blass JP, Rex Sheu KF, Ko LW, Bancher CL, Wisniewski HM, Bouvier M, Duffy JT, Baker AC. Presence of low amounts of "neuronal" antigens in cultured human skin fibroblasts. J Neurol Sci 1992; 107:223-32. [PMID: 1564522 DOI: 10.1016/0022-510x(92)90293-t] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
To explore the utility of cultured skin fibroblasts in investigating diseases of the nervous system in which constituents characteristic of neurons are involved, sensitive immunochemical methods were used to test for the presence in skin fibroblasts of low amounts of proteins normally used as neuronal markers. The presence of each of the neurofilament triplet proteins and of neuron-specific enolase was demonstrated by immunoblotting and by immunocytochemistry, and of an 86-kDa synapsin-like material by immunoblotting. These observations agree with previous suggestions that readily available cultured fibroblasts may be useful in investigations of disorders in which molecules are involved which are typically associated with neurons in vivo, such as Alzheimer's disease.
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Affiliation(s)
- J P Blass
- Altschul Laboratory for Dementia Research, Cornell University Medical College, Burke Medical Research Institute, White Plains, NY 10605
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19
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Abstract
There is a well established requirement for making output measurements on medical ultrasound equipment, in particular for safety and calibration purposes. In addition there is a need for non-linear propagation models to allow predictions to be made for in vivo pressure fields of systems ranging from lithotripters to diagnostic imaging sets. In the past it has been shown that good agreement can be found between experiment and theory for transducers that behave as perfect pistons but little work has been published on comparisons for 'real' medical ultrasound systems. This paper compares experiment with theory for a medical ultrasound system operating in water. Pressure field measurements are presented for a Philips 3.5 MHz, 13 mm diameter, 'long internal focus' (LIF) transducer. The measurements were made using a membrane hydrophone in water. Initially the transducer was driven continuously with a function generator at low amplitude so that the effective aperture radius and focal length could be determined. The transducer was then driven by a Philips 'sono-Diagnost B' imaging system which produced a short finite amplitude pulse. The results are compared with a finite difference model based on the parabolic approximation to the non-linear wave equation. Reasonable agreement (typically 10-15%) is shown for spectral magnitudes although some difficulty was encountered in accurately characterizing the transducer in terms of its geometry and drive waveform.
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Affiliation(s)
- A C Baker
- School of Physics, University of Bath, UK
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20
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Abstract
Lithotripsy is now the method of choice for the treatment of renal calculi. The mechanism of destruction is not clearly understood, and detailed knowledge of the shock-wave characteristics at the calculus would aid understanding of the phenomenon. Current methods of measuring the pressure pulse by observing it through a water path are not well characterized, and the results may not represent the actual pressure fluctuations produced in vivo. In order to determine the actual pressure pulse experienced at the site of the calculus, measurements have been made through a variety of biological media. The results show that there are considerable differences between measurements taken through a water path and through biological media. This paper describes the pressure fluctuations in the time domain. The implications of the results for lithotripsy are discussed.
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Affiliation(s)
- R Finney
- Department of Clinical Engineering and Medical Physics, Southmead Hospital, Westbury on Trym, Bristol, UK
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21
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Abstract
When cultured skin fibroblasts were exposed to culture conditions designed to favor the expression of neuronal antigens, cells from each of 19 patients with Alzheimer's disease reacted immunocytochemically with antibodies to paired helical filaments, Alz-50, or both compared with only a small fraction of cells from 19 identically treated age-matched control cultures. Immunoblots confirmed the presence of soluble material reacting with Alz-50 antibody in the Alzheimer fibroblasts. Ultrastructurally, fascicles of 10-nm filaments were seen that occasionally twisted around each other, but no structures were seen that were identical to paired helical filaments. Thus, cultured skin fibroblasts from patients with Alzheimer's disease developed greater immunocytochemical reactivity with antibodies raised to paired helical filaments than did fibroblasts from control subjects, when cultured under the specified conditions.
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Affiliation(s)
- J P Blass
- Altschul Laboratory for Dementia Research, Cornell University Medical College, Burke Medical Research Institute, White Plains, NY 10605
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22
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Lamont RF, Neave S, Baker AC, Steer PJ. Intrauterine pressures in labours induced by amniotomy and oxytocin or vaginal prostaglandin gel compared with spontaneous labour. Br J Obstet Gynaecol 1991; 98:441-7. [PMID: 2059589 DOI: 10.1111/j.1471-0528.1991.tb10337.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Uterine activity during the first stage of labour was measured by an intrauterine transducer in 22 women induced with intravaginal PGE2 gel, in 37 induced by amniotomy and intravenous oxytocin, and in nine women in spontaneous labour. The nulliparous women in the PGE2 gel group had a significantly longer pre-established phase of labour and a significantly shorter established phase than nulliparae induced by amniotomy and oxytocin. The mean levels of total uterine activity (kPas) during labour and the uterine activity integrals (kPas/15 min) were significantly lower in nulliparae induced with PGE2 gel than in those induced by amniotomy and oxytocin. These findings suggest that PGE2 gel has a positive, beneficial effect on cervical compliance during the pre-established phase, resulting in less myometrial effort during established labour. These effects were less evident in parous women, probably because of an innate lower cervical resistance due to their previous labours. Uterine activity patterns during the 4 h leading to full cervical dilatation in nulliparae were similar in labours induced with PGE2 gel and spontaneous labours, whereas labours induced by amniotomy and oxytocin exhibited a significantly different pattern. Expulsion of the fetus during normal labour is a function of both uterine contractions and a decrease in the cervical resistance and the data suggest that induction by PGE2 gel more closely mimics spontaneous labour, whereas the predominant effect of oxytocin is to stimulate myometrial activity.
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Affiliation(s)
- R F Lamont
- Department of Obstetrics and Gynaecology, University of Southampton Medical School
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23
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Abstract
Since previous studies have suggested that the coupling of oxidation to phosphorylation is impaired in Alzheimer brain and fibroblasts, the effects of carbonyl cyanide m-chlorophenylhydrazone, a hydrazone known to uncouple mitochondrial oxidative phosphorylation, were tested on the development of immunoreactivity with antibodies to "Alzheimer antigens" in cultured fibroblasts from cognitively intact subjects. The fibroblasts were exposed for 10 to 14 days to a medium (DMd) modeled on media that favor neuronal differentiation in fetal brain cultures. The addition of a 10-microns concentration of carbonyl cyanide m-chlorophenylhydrazone to the DMd culture medium increased by more than 10-fold the proportion of cells reacting immunocytochemically with antibodies to paired helical filaments and by 157-fold the proportion of cells reacting with the Alz-50 monoclonal antibody. These observations suggest that the oxidative abnormalities previously described in tissues from patients with Alzheimer's disease may contribute to the accumulation of abnormal cytoskeletal materials in this disorder.
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Affiliation(s)
- J P Blass
- Altschul Laboratory for Dementia Research, Burke Rehabilitation Center, White Plains, NY
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24
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Abstract
Two easily measured abnormal properties of fibroblasts from patients with Alzheimer's disease have been utilized to develop an in vitro test system for screening novel therapeutic agents for Alzheimer's disease. The abnormal properties selected for study were increased isoproterenol-stimulated cyclic adenosine monophosphate production and decreased pH (measured by the weak-acid distribution method). L-Carnitine was tested as a potential therapeutic agent, since it has been used to treat a variety of experimental metabolic encephalopathies. The addition of L-carnitine normalized both of these properties in the Alzheimer cells. Tissue culture may aid as a preliminary screen for identifying novel approaches to the treatment of Alzheimer's disease.
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Affiliation(s)
- B A Malow
- Altschul Laboratory for Dementia Research, Cornell University Medical College, White Plains, NY
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25
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Abstract
Non-linear propagation models are required to predict the fields from medical ultrasonic equipment, particularly diagnostic devices and lithotripters. This need arises because of the requirement to know the safety and effectiveness of these instruments. Several theoretical models have been developed to take account of non-linear propagation as well as diffraction, focusing and attenuation, but little work has been done to validate them. This paper compares two theoretical models with each other and with measurements in the field of a 3.5 MHz focused transducer. One model uses an approximation based on modelling the beam profile with a Gaussian function, whereas the other utilises a full three-dimensional finite difference method, using a uniform transducer excitation function. Comparisons are made in the time and frequency domain at the focus for four different source levels and in general the results agree to within about 10%. However, an important conclusion is that the finite amplitude field of a real transducer may differ significantly from that of an ideal piston source, particularly for the weakly focused beams used in diagnostic ultrasound.
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Affiliation(s)
- D R Bacon
- Division of Radiation Science and Acoustics, National Physical Laboratory, Teddington, Middlesex, UK
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26
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Hinman LM, Sheu KF, Baker AC, Kim YT, Blass JP. Deficiency of pyruvate dehydrogenase complex (PDHC) in Leigh's disease fibroblasts: an abnormality in lipoamide dehydrogenase affecting PDHC activation. Neurology 1989; 39:70-5. [PMID: 2909916 DOI: 10.1212/wnl.39.1.70] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
Abstract
Several groups have reported abnormalities of the pyruvate dehydrogenase complex (PDHC) in cultured cells or other tissues from patients with Leigh's disease (subacute necrotizing encephalomyelopathy). We therefore undertook studies to elucidate the molecular basis of the defect of PDHC in cultured skin fibroblasts from two patients with Leigh's disease. The deficit of total PDHC activity in homogenates of Leigh's disease fibroblasts could be restored by adding exogenous lipoamide dehydrogenase (LAD, E3), the third component of PDHC. The LAD in these Leigh's disease cells had a markedly reduced ability (less than 20% of normal LAD) to reconstitute with other PDHC components to form active enzyme complex. A polyclonal antibody to pig heart LAD inhibited LAD activity in control cells more efficiently than in Leigh's disease cells. Other mitochondrial enzyme activities and growth of these two Leigh's disease cells appeared normal. These results suggest that the deficiency of PDHC in these two patients with Leigh's disease was due to a structural abnormality of the LAD component of PDHC.
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Affiliation(s)
- L M Hinman
- Department of Neurology, Cornell University Medical College, Burke Rehabilitation Center, White Plains, NY
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27
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Abstract
Cultured skin fibroblasts from four patients with Alzheimer's disease had life spans comparable to those of six age-sex matched controls, whether measured by passages to phase-out, cumulative population doublings to phase out, or percentage of nuclei incorporating [3H]thymidine (Cristofalo index). These results provide direct experimental evidence that Alzheimer's disease is not simply a form of accelerated aging. They suggest that the abnormalities, described by several groups, in Alzheimer fibroblasts reflect the disease rather than the physiological age of the donor, making the cultured cell a valid tool for studying the cellular pathophysiology of this disorder. Together with other data, these observations raise the possibility that some forms of Alzheimer's disease may represent inborn error(s) of metabolism of late clinical onset.
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Affiliation(s)
- A K Balin
- Laboratory for Investigative Dermatology, Rockefeller University, New York, NY 10021
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28
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Massil HY, Baker AC, O'Brien PM. A comparison of oral prostaglandin E2 tablets with intravenous oxytocin for stimulation of labor after premature rupture of membranes at term. Acta Obstet Gynecol Scand 1988; 67:703-9. [PMID: 3250183 DOI: 10.3109/00016349809004293] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Sixty-nine patients (48 primigravidae and 21 multigravidae) with 12 hours of spontaneous premature rupture of membranes (PROM) after 36 weeks gestation were randomly allocated to receive either prostaglandin E2 (PGE2) oral tablets or intravenous oxytocin to stimulate labor. The two treatments were compared regarding stimulation - delivery interval (SDI), analgesic requirements, maternal and fetal side effects, and patient acceptability. The mean SDI was shorter in the oxytocin group, but without statistical significance. Analgesic requirements and fetal side effects were similar in the two groups, but there was a higher incidence of nausea and vomiting in those patients receiving the maximum dose (1 mg hourly) of PGE2. On subjective assessment, clinicians considered oxytocin to be more effective (p less than 0.05), while midwives felt both regimes to be equally helpful. PGE2 oral tablets were significantly (p less than 0.05) more acceptable to the patients, who preferred the convenience of oral dosing, the absence of an i.v. line and the increased mobility. It is concluded that PGE2 tablets are a safe and effective method of stimulating labor following PROM, and highly acceptable to parturients. In those women in whom labor has not been established within 8 h of initiating PGE2 therapy, or in whom gastric side effects are troublesome, intravenous oxytocin should be substituted.
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Affiliation(s)
- H Y Massil
- Academic Depart. Obstetrics & Gynaecology, Royal Free Hospital, London
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29
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Hinman LM, Ksiezak-Reding H, Baker AC, Blass JP. Pigeon liver phosphoprotein phosphatase: an effective activator of pyruvate dehydrogenase in tissue homogenates. Arch Biochem Biophys 1986; 246:381-90. [PMID: 3008658 DOI: 10.1016/0003-9861(86)90483-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
A fluoride-insensitive, non-metal-requiring pyruvate dehydrogenase phosphatase has been purified 730-fold from pigeon liver acetone powder and proven to be a convenient reagent for studies of pyruvate dehydrogenase complex and its activation (phosphorylation) state in brain and other tissues. This phosphatase is a cytoplasmic enzyme (Mr = 80,000), and fits the functional definition of a type 1 phosphoprotein phosphatase. The pigeon liver phosphatase can be used to activate pyruvate dehydrogenase complex in vitro in brain and other crude tissue homogenates. Addition of the cytoplasmic pigeon liver phosphatase to a homogenate from rat or mouse brain frozen in situ activated pyruvate dehydrogenase to levels comparable to that found in ischemic brain. The fluoride insensitivity of this phosphatase was used to develop a convenient technique for stopping the pyruvate dehydrogenase activation state in situ in cultured skin fibroblasts and then fully activating the complex in vitro in 5 min. The use of this phosphatase as a reagent can facilitate the study of pyruvate dehydrogenase activation defects in mammalian tissues including cultured cells in normal and disease states.
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Baker AC. THE PRACTICAL SIGNIFICANCE OF THE REVOLUTION OF THE EMBRYO IN APHID EGGS. Science 1921; 54:133-5. [PMID: 17777155 DOI: 10.1126/science.54.1389.133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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37
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Baker AC. The Correct Name for Our Apple-Grain Aphis. Science 1917; 46:410-1. [PMID: 17758540 DOI: 10.1126/science.46.1191.410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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38
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Affiliation(s)
- A. C. Baker
- Laboratory Deciduous Fruit Insect Investigations, Bureau of Entomology, Vienna, Va
| | - W. F. Turner
- Laboratory Deciduous Fruit Insect Investigations, Bureau of Entomology, Vienna, Va
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39
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Baker AC, Turner WF. THE BROWN GRAPE APHID. Science 1915; 41:834. [PMID: 17835991 DOI: 10.1126/science.41.1066.834] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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