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Abstract
Aquaculture is the fastest growing food production sector and it contributes significantly to global food security. Based on Food and Agriculture Organization (FAO) of the United Nations, aquaculture production must increase significantly to meet the future global demand for aquatic foods in 2050. According to Intergovernmental Panel on Climate Change (IPCC) and FAO, climate change may result in global warming, sea level rise, changes of ocean productivity, freshwater shortage, and more frequent extreme climate events. Consequently, climate change may affect aquaculture to various extents depending on climatic zones, geographical areas, rearing systems, and species farmed. There are 2 major challenges for aquaculture caused by climate change. First, the current fish, adapted to the prevailing environmental conditions, may be suboptimal under future conditions. Fish species are often poikilothermic and, therefore, may be particularly vulnerable to temperature changes. This will make low sensitivity to temperature more important for fish than for livestock and other terrestrial species. Second, climate change may facilitate outbreaks of existing and new pathogens or parasites. To cope with the challenges above, 3 major adaptive strategies are identified. First, general 'robustness' will become a key trait in aquaculture, whereby fish will be less vulnerable to current and new diseases while at the same time thriving in a wider range of temperatures. Second, aquaculture activities, such as input power, transport, and feed production contribute to greenhouse gas emissions. Selection for feed efficiency as well as defining a breeding goal that minimizes greenhouse gas emissions will reduce impacts of aquaculture on climate change. Finally, the limited adoption of breeding programs in aquaculture is a major concern. This implies inefficient use of resources for feed, water, and land. Consequently, the carbon footprint per kg fish produced is greater than when fish from breeding programs would be more heavily used. Aquaculture should use genetically improved and robust organisms not suffering from inbreeding depression. This will require using fish from well-managed selective breeding programs with proper inbreeding control and breeding goals. Policymakers and breeding organizations should provide incentives to boost selective breeding programs in aquaculture for more robust fish tolerating climatic change.
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Sae-Lim P, Kause A, Mulder HA, Olesen I. BREEDING AND GENETICS SYMPOSIUM: Climate change and selective breeding in aquaculture. J Anim Sci 2017. [DOI: 10.2527/jas2016.1066] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Janhunen M, Kause A, Vehviläinen H, Nousiainen A, Koskinen H. Accounting for early rearing density effects on growth in the genetic evaluation of rainbow trout, Oncorhynchus mykiss1. J Anim Sci 2013; 91:5144-52. [DOI: 10.2527/jas.2013-6683] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- M. Janhunen
- MTT Agrifood Research Finland, Biotechnology and Food Research, Biometrical Genetics, Myllytie 1, FI-31600 Jokioinen, Finl
| | - A. Kause
- MTT Agrifood Research Finland, Biotechnology and Food Research, Biometrical Genetics, Myllytie 1, FI-31600 Jokioinen, Finl
| | - H. Vehviläinen
- MTT Agrifood Research Finland, Biotechnology and Food Research, Biometrical Genetics, Myllytie 1, FI-31600 Jokioinen, Finl
| | - A. Nousiainen
- Finnish Game and Fisheries Research Institute, Tervo Fisheries Research and Aquaculture, Huuhtajantie 160, FI-72210 Tervo, Finl
| | - H. Koskinen
- Finnish Game and Fisheries Research Institute, Tervo Fisheries Research and Aquaculture, Huuhtajantie 160, FI-72210 Tervo, Finl
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Sae-Lim P, Kause A, Mulder HA, Martin KE, Barfoot AJ, Parsons JE, Davidson J, Rexroad CE, van Arendonk JAM, Komen H. Genotype-by-environment interaction of growth traits in rainbow trout (Oncorhynchus mykiss): a continental scale study. J Anim Sci 2013; 91:5572-81. [PMID: 24085417 DOI: 10.2527/jas.2012-5949] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Rainbow trout is a globally important fish species for aquaculture. However, fish for most farms worldwide are produced by only a few breeding companies. Selection based solely on fish performance recorded at a nucleus may lead to lower-than-expected genetic gains in other production environments when genotype-by-environment (G × E) interaction exists. The aim was to quantify the magnitude of G × E interaction of growth traits (tagging weight; BWT, harvest weight; BWH, and growth rate; TGC) measured across 4 environments, located in 3 different continents, by estimating genetic correlations between environments. A total of 100 families, of at least 25 in size, were produced from the mating 58 sires and 100 dams. In total, 13,806 offspring were reared at the nucleus (selection environment) in Washington State (NUC) and in 3 other environments: a recirculating aquaculture system in Freshwater Institute (FI), West Virginia; a high-altitude farm in Peru (PE), and a cold-water farm in Germany (GER). To account for selection bias due to selective mortality, a multitrait multienvironment animal mixed model was applied to analyze the performance data in different environments as different traits. Genetic correlation (rg) of a trait measured in different environments and rg of different traits measured in different environments were estimated. The results show that heterogeneity of additive genetic variances was mainly found for BWH measured in FI and PE. Additive genetic coefficient of variation for BWH in NUC, FI, PE, and GER were 7.63, 8.36, 8.64, and 9.75, respectively. Genetic correlations between the same trait in different environments were low, indicating strong reranking (BWT: rg = 0.15 to 0.37, BWH: rg = 0.19 to 0.48, TGC: rg = 0.31 to 0.36) across environments. The rg between BWT in NUC and BWH in both FI (0.31) and GER (0.36) were positive, which was also found between BWT in NUC and TGC in both FI (0.10) and GER (0.20). However, rg were negative between BWT in NUC and both BWH (-0.06) and TGC (-0.20) in PE. Correction for selection bias resulted in higher additive genetic variances. In conclusion, strong G × E interaction was found for BWT, BWH, and TGC. Accounting for G × E interaction in the breeding program, either by using sib information from testing stations or environment-specific breeding programs, would increase genetic gains for environments that differ significantly from NUC.
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Affiliation(s)
- P Sae-Lim
- Animal Breeding and Genomics Centre, Wageningen University, P.O. Box 338, 6700 AH, Wageningen, the Netherlands
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Rose G, Kause A, Mulder HA, van der Werf JHJ, Thompson AN, Ferguson MB, van Arendonk JAM. Merino ewes can be bred for body weight change to be more tolerant to uncertain feed supply. J Anim Sci 2013; 91:2555-65. [PMID: 23508033 DOI: 10.2527/jas.2012-5539] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Sheep in Australia experience periods with different feed supply causing them to gain and lose BW during the year. It is more efficient if ewes lose less BW during periods of poor nutrition and gain more BW during periods of good nutrition. We investigated whether BW loss during periods of poor nutrition and BW gain during periods of good nutrition are genetically different traits. We used BW measurements from 2,336 adult Merino ewes managed over 5 yr in a Mediterranean climate in Katanning, Australia. Body weight loss is the difference between 2 BW measured 42 d apart during mating, a period of poor nutrition. Body weight gain is the difference between 2 BW measured 131 d apart during a period of good nutrition between prelambing and weaning. We estimated variance compnents of BW change using 3 methods: 1) as a trait calculated by subtracting the first BW from the second, 2) multivariate analysis of BW traits, and 3) random regression analysis of BW. The h(2) and genetic correlations (rg) estimated using the multivariate analysis of BW and the BW change trait were very similar whereas the random regression analysis estimated lower heritabilities and more extreme negative genetic correlations between BW loss and gain. The multivariate model fitted the data better than random regression based on Akaike and Bayesian information criterion so we considered the results of the multivariate model to be more reliable. The heritability of BW loss (h(2) = 0.05-0.16) was smaller than that of BW gain (h(2) = 0.14-0.37). Body weight loss and gain can be bred for independently at 2 and 4 yr of age (rg = 0.03 and -0.04) whereas at 3 yr of age ewes that genetically lost more BW gained more BW (rg = -0.41). Body weight loss is genetically not the same trait at different ages (rg range 0.13-0.39). Body weight gain at age 3 yr is genetically the same trait at age 4 yr (rg = 0.99) but is different between age 2 yr and the older ages (rg = 0.53 and 0.51). These results suggest that as the ewes reach their mature BW, BW gain at different ages becomes the same trait. This does not apply to BW loss. We conclude that BW change could be included in breeding programs to breed adult Merino ewes that are more tolerant to variation in feed supply.
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Affiliation(s)
- G Rose
- Animal Breeding and Genomics Centre, Wageningen University, PO Box 338, 6700 AH, Wageningen, The Netherlands.
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Bloemhof S, Kause A, Knol EF, Van Arendonk JAM, Misztal I. Heat stress effects on farrowing rate in sows: genetic parameter estimation using within-line and crossbred models. J Anim Sci 2012; 90:2109-19. [PMID: 22267000 DOI: 10.2527/jas.2011-4650] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The pork supply chain values steady and undisturbed piglet production. Fertilization and maintaining gestation in warm and hot climates is a challenge that can be potentially improved by selection. The objective of this study was to estimate 1) genetic variation for farrowing rate of sows in 2 dam lines and their reciprocal cross; 2) genetic variation for farrowing rate heat tolerance, which can be defined as the random regression slope of farrowing rate against increasing temperature at day of insemination, and the genetic correlation between farrowing rate and heat tolerance; 3) genetic correlation between farrowing rate in purebreds and crossbreds; and 4) genetic correlation between heat tolerance in purebreds and crossbreds. The estimates were based on 93,969 first insemination records per cycle from 24,456 sows inseminated between January 2003 and July 2008. These sows originated from a Dutch purebred Yorkshire dam line (D), an International purebred Large White dam line (ILW), and from their reciprocal crosses (RC) raised in Spain and Portugal. Within-line and crossbred models were used for variance component estimation. Heritability estimates for farrowing rate were 0.06, 0.07, and 0.02 using within-line models for D, ILW, and RC, respectively, and 0.07, 0.07, and 0.10 using the crossbred model, respectively. For farrowing rate, purebred-crossbred genetic correlations were 0.57 between D and RC and 0.50 between ILW and RC. When including heat tolerance in the within-line model, heritability estimates for farrowing rate were 0.05, 0.08, and 0.03 for D, ILW, and RC, respectively. Heritability for heat tolerance at 29.3°C was 0.04, 0.02, and 0.05 for D, ILW, and RC, respectively. Genetic correlations between farrowing rate and heat tolerance tended to be negative in crossbreds and ILW-line sows, implying selection for increased levels of production traits, such as growth and reproductive output, is likely to increase environmental sensitivity. This study shows that genetic selection for farrowing rate and heat tolerance is possible. However, when this selection is based solely on purebred information, the expected genetic progress on farrowing rate and heat tolerance in crossbreds (commercial animals) would be inconsequential.
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Affiliation(s)
- S Bloemhof
- TOPIGS Research Center IPG, P.O. Box 43, 6640 AA Beuningen, the Netherlands. Saskia.B
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Sae-Lim P, Komen H, Kause A, van Arendonk JAM, Barfoot AJ, Martin KE, Parsons JE. Defining desired genetic gains for rainbow trout breeding objective using analytic hierarchy process. J Anim Sci 2011; 90:1766-76. [PMID: 22178851 DOI: 10.2527/jas.2011-4267] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Distributing animals from a single breeding program to a global market may not satisfy all producers, as they may differ in market objectives and farming environments. Analytic hierarchy process (AHP) is used to estimate preferences, which can be aggregated to consensus preference values using weighted goal programming (WGP). The aim of this study was to use an AHP-WGP based approach to derive desired genetic gains for rainbow trout breeding and to study whether breeding trait preferences vary depending on commercial products and farming environments. Two questionnaires were sent out. Questionnaire-A (Q-A) was distributed to 178 farmers from 5 continents and used to collect information on commercial products and farming environments. In this questionnaire, farmers were asked to rank the 6 most important traits for genetic improvement from a list of 13 traits. Questionnaire B (Q-B) was sent to all farmers who responded to Q-A (53 in total). For Q-B, preferences of the 6 traits were obtained using pairwise comparison. Preference intensity was given to quantify (in % of a trait mean; G%) the degree to which 1 trait is preferred over the other. Individual preferences, social preferences, and consensus preferences (Con-P) were estimated using AHP and WGP. Desired gains were constructed by multiplying Con-P by G%. The analysis revealed that the 6 most important traits were thermal growth coefficient (TGC), survival (Surv), feed conversion ratio (FCR), condition factor (CF), fillet percentage (FIL%), and late maturation (LMat). Ranking of traits based on average Con-P values were Surv (0.271), FCR (0.246), TGC (0.246), LMat (0.090), FIL% (0.081), and CF (0.067). Corresponding desired genetic gains (in % of trait mean) were 1.63, 1.87, 1.67, 1.29, 0.06, and 0.33%, respectively. The results from Con-P values show that trait preferences may vary for different types of commercial production or farming environments. This study demonstrated that combination of AHP and WGP can be used to derive desired gains for a breeding program and to quantify differences due to variations market demand or production environment.
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Affiliation(s)
- P Sae-Lim
- Animal Breeding and Genomics Centre, Wageningen University, Wageningen, the Netherlands.
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Kause A, Quinton C, Airaksinen S, Ruohonen K, Koskela J. Quality and production trait genetics of farmed European whitefish, Coregonus lavaretus1. J Anim Sci 2011; 89:959-71. [DOI: 10.2527/jas.2010-2981] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Varkoohi S, Pakdel A, Moradi Shahr Babak M, Nejati Javaremi A, Kause A, Zaghari M. Genetic parameters for feed utilization traits in Japanese quail. Poult Sci 2011; 90:42-7. [PMID: 21177442 DOI: 10.3382/ps.2010-01072] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Feed costs substantially affect the efficiency of poultry operations, justifying genetic improvement of feed utilization by selection. The current research was conducted to estimate genetic variance for the 4-wk feed conversion ratio (FCR) and its genetic correlations with BW, BW gain (WG), feed intake (FI), and residual feed intake (RFI) in Japanese quail. The data analyzed originated from a line selected for low FCR for 3 generations. In each generation, 35 sires and 70 dams were used as parents for the next generation. Body weight and WG were recorded on a total of 1,226 individuals, whereas FCR, RFI, and FI were recorded on 505 family groups. The results showed that heritability estimates (±SE) of BW at 28 d of age and WG between 7 and 28 d of age were 0.22 ± 0.05 and 0.28 ± 0.06, respectively. For FI, FCR, and RFI, significant genetic variances were estimated. Genetic correlations of FCR between 7 and 28 d of age with WG and FI between 7 and 28 d of age were -0.45 ± 0.09 and 0.24 ± 0.08, respectively. This implies that a low FCR is genetically related to a high WG and low FI. The genetic correlation between FCR from 7 to 28 d of age and RFI from 7 to 28 d of age was 0.26 ± 0.08, indicating that the 2 alternative feed efficiency traits are genetically different traits, and that the correlated genetic response in one of them in response to selection on the other is likely to be only moderate. Genetic correlations of RFI from 7 to 28 d of age with WG and FI between 7 and 28 d of age were 0.08 ± 0.04 and 0.74 ± 0.11, respectively. This reflects the fact that RFI is phenotypically independent of WG, which tends to make the genetic correlation between RFI and WG low as well. In conclusion, all the traits analyzed displayed significant genetic variance, allowing their genetic improvement by selection, yet the alternative feed utilization traits, FCR and RFI, displayed different genetic characteristics.
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Affiliation(s)
- S Varkoohi
- Department of Animal Science, University College of Agriculture and Natural Resources, University of Tehran, Karaj, Iran.
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Varkoohi S, Moradi Shahr Babak M, Pakdel A, Nejati Javaremi A, Zaghari M, Kause A. Erratum to “Response to selection for feed conversion ratio in Japanese quail” (Poult. Sci. 89:1590–1598). Poult Sci 2011. [DOI: 10.3382/ps.2011-90-1-0295] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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Varkoohi S, Moradi Shahr Babak M, Pakdel A, Nejati Javaremi A, Zaghari M, Kause A. Response to selection for feed conversion ratio in Japanese quail. Poult Sci 2010; 89:1590-8. [PMID: 20634511 DOI: 10.3382/ps.2010-00744] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
We investigated the effect of selection for 4-wk feed conversion ratio (FCR) on genetic improvement of FCR, BW, weight gain (WG), feed intake (FI), and residual FI (RFI) in Japanese quail. The F line was selected for reduced FCR and the C line was maintained as a randombred control. In each generation, 35 sires and 70 dams were used as parents for the next generation. Three generations of selection were performed. Realized heritability for FCR was calculated as the ratio of cumulative selection response to the cumulative selection differential, and additionally, genetic response was quantified as the difference between the means of selection and control lines. The results showed that realized heritability for FCR after 3 generations of selection was 0.67. The mean FCR in F line and C line in the last generation was 2.13 and 2.61, respectively. This is 18.4% cumulative genetic improvement, or 6.1% improvement per generation. In the last generation, the means of F and C lines were 193 and 166 g for BW at age 28 d (16.4% total increase, or 5.5% per generation), 184 and 158 g for WG (17.2% total higher gain and 5.7% per generation), 393 and 413 g for FI (4.9% total higher consumption and 1.6% per generation), and -24.5 and 10.2 for RFI (-34.7 g of cumulative gain; -11.6 g per generation), respectively. These results show that selection to decrease FCR increases BW and WG and decreases FI and RFI as a correlated response.
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Affiliation(s)
- S Varkoohi
- Department of Animal Science, University College of Agriculture and Natural Resources, University of Tehran, PO Box 4111, Karaj, Iran. [corrected]
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Kuukka-Anttila H, Peuhkuri N, Kolari I, Paananen T, Kause A. Quantitative genetic architecture of parasite-induced cataract in rainbow trout, Oncorhynchus mykiss. Heredity (Edinb) 2010; 104:20-7. [PMID: 19773806 DOI: 10.1038/hdy.2009.123] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
Parasites impose costs on their hosts. The capability to fight against them is of great advantage, but may also be traded off with other traits. Although often observed at the phenotypic level, our knowledge of the extent to which such trade-offs are genetically determined is relatively poor. We tested this possibility with a farmed rainbow trout population suffering from natural Diplostomum spp. infections that cause cataracts in fish. We estimated the heritability of cataract severity and examined phenotypic and genetic correlations between cataract and a set of performance traits measured three times during a 3-year rearing period. A cataract score was used as an indicator of the host's capability to resist and/or tolerate the parasite. Our results showed moderate heritability for the cataract. Nevertheless, we found no evidence for a genetic or phenotypic trade-off between parasite resistance/tolerance and the measured performance traits. Initial body weight was not correlated with the cataract score. Phenotypic and genetic correlations of cataract severity with body mass and condition measured in the second and third year were strongly negative, indicating reduced growth and condition in fish with a high cataract score. The reduced body size and condition in cataract-bearing fish were probably reflected in the phenotypic association between a high cataract score and delayed maturity age in females. Put together, our study did not provide evidence of genetic or phenotypic trade-offs between Diplostomum resistance/tolerance and a number of performance traits. Therefore, selection for lessened Diplostomum-caused cataracts is unlikely to have a negative impact on the studied performance traits.
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Affiliation(s)
- H Kuukka-Anttila
- Department of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland.
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Kause A, Stien L, Rungruangsak-Torrissen K, Ritola O, Ruohonen K, Kiessling A. Image analysis as a tool to facilitate selective breeding of quality traits in rainbow trout. Livest Sci 2008. [DOI: 10.1016/j.livsci.2007.05.016] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Quinton CD, Kause A, Ruohonen K, Koskela J. Genetic relationships of body composition and feed utilization traits in European whitefish (Coregonus lavaretus L.) and implications for selective breeding in fishmeal- and soybean meal-based diet environments. J Anim Sci 2007; 85:3198-208. [PMID: 17709787 DOI: 10.2527/jas.2006-792] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Body composition traits have potential use in fish breeding programs as indicator traits for selective improvement of feed efficiency. Moreover, feed companies are increasingly replacing traditional fish meal (FM) based ingredients in feeds for carnivorous farmed fish with plant protein ingredients. Therefore, genetic relationships of composition and feed utilization traits need to be quantified for both current FM-based and future plant-based aquaculture feeds. Individual whole-body lipid% and protein%, daily gain (DG), ADFI, and G:F (daily gain/daily feed intake) were measured on 1,505 European whitefish (Coregonus lavaretus) from 70 half/full-sib families reared in a split-family design with either a typical FM or a novel soybean meal (SBM) based diet. Diet-specific genetic parameters were estimated with multiple-trait animal models. Lipid% was significantly greater in the FM diet group than in the SBM group, even independent of final BW or total feed intake. In both diets, lipid% showed moderate heritability (0.12 to 0.22) and had positive phenotypic and genetic correlations with DG (0.37 to 0.82) and ADFI (0.36 to 0.88). Therefore, selection against lipid% can be used to indirectly select for lower feed intake. Protein% showed low heritability (0.05 to 0.07), and generally very weak or zero correlations with DG and ADFI. In contrast to many previous studies on terrestrial livestock, lipid% showed zero or very weak phenotypic and genetic correlations with G:F. However, selection index calculations demonstrated that simultaneous selection for high DG and reduced lipid% could be used to indirectly increase G:F; this strategy increased absolute genetic response in G:F by a factor of 1.5 to 1.6 compared with selection on DG alone. Lipid% and protein% were not greatly affected by genotype-diet environment interactions, and therefore, selection strategies for improving body composition within current FM diets should also improve populations for future SBM diets.
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Affiliation(s)
- C D Quinton
- MTT Agrifood Research Finland, Biotechnology and Food Research, Biometrical Genetics, FI-31600 Jokioinen, Finland
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Kause A, Paananen T, Ritola O, Koskinen H. Direct and indirect selection of visceral lipid weight, fillet weight, and fillet percentage in a rainbow trout breeding program. J Anim Sci 2007; 85:3218-27. [PMID: 17709780 DOI: 10.2527/jas.2007-0332] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
We assessed whether visceral lipid weight, fillet weight, and percentage fillet from BW, 3 traits laborious to record, could be genetically improved by indirect selection on more easily measured traits in farmed rainbow trout. Visceral lipid is discarded as waste during slaughter, influencing production efficiency and production costs. Fillet weight and fillet percentage directly influence economic returns in trout production. The study comprised 3 steps. First, we assessed the degree to which selection on percentage of visceral weight from BW indirectly changes visceral lipid weight and the size of intestines and internal organs. The phenotypic analysis of weights of viscera, intestines, visceral lipid, liver, and gonads measured from 40 fish revealed that phenotypic selection against visceral weight was most strongly directed to visceral lipid, and to a lesser degree to intestines and gonads. Because genetic relationships among these traits were not established, it is not known whether indirect selection leads to genetic responses. Second, we examined whether direct selection for the fillet traits could be replaced by indirect selection on BW, eviscerated BW, visceral weight, visceral percentage, head volume, and relative head volume (head volume relative to BW). The selection index calculations based on the quantitative genetic parameters obtained from multigenerational pedigree data showed that genetic improvement of fillet percentage through direct selection (selection accuracy, r(TI) = 0.54) was equally efficient compared with indirect selection on visceral percentage ( r(TI) = 0.54). Genetic improvement of fillet weight through direct selection (r(TI) = 0.56) was always more efficient than indirect selection, yet indirect selection for eviscerated BW ( r(TI) = 0.50) was almost as efficient as direct selection. Third, the expected genetic responses to alternative selection indices showed that improved fillet percentage was mainly a result of a moderate decrease in visceral weight rather than of a major increase in absolute fillet weight. Moreover, fillet percentage is challenging to improve, even if it exhibits moderate heritability (h(2) = 0.29). This is because fillet percentage displays low phenotypic variation. In conclusion, fillet weight and fillet percentage can be increased by indirect selection against visceral percentage and for high eviscerated BW.
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Affiliation(s)
- A Kause
- MTT Agrifood Research Finland, Biotechnology and Food Research, Biometrical Genetics, FI-31600 Jokioinen, Finland.
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Kause A, Tobin D, Houlihan DF, Martin SAM, Mäntysaari EA, Ritola O, Ruohonen K. Feed efficiency of rainbow trout can be improved through selection: Different genetic potential on alternative diets1. J Anim Sci 2006; 84:807-17. [PMID: 16543557 DOI: 10.2527/2006.844807x] [Citation(s) in RCA: 67] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
To assess the genetic potential for selection of increased feed efficiency in rainbow trout (Oncorhynchus mykiss), we estimated the heritabilities and correlations for BW, daily weight gain (DG), and daily feed intake (DFI). Body weight was recorded 5 times, and DG and DFI 3 times during a feeding trial lasting 22 mo. To test the hypothesis that phenotypic and genetic parameters were influenced by a nutritional environment, fish were fed either a modern normal protein diet (NP, 40 to 45% protein and 30 to 33% lipid) or an alternative high protein diet (HP, 50 to 56% protein, 20 to 24% lipid) in a split-family design. Results showed that there were no large differences in heritabilities between the diets. Average heritability for DFI over both diets and different fish ages was low (average h2 = 0.10), indicating that modest genetic changes in response to selection can be obtained. Average heritabilities for BW and DG over both diets and different fish ages were 0.28 and 0.33, respectively. The NP diet enabled fish to express a wide range of BW, as shown by the increased coefficients of phenotypic variation for BW. Fish fed the HP diet showed increased phenotypic variation for DFI in > 750-g fish. On the NP diet, genetic correlations of DFI with DG and BW were very strong for 750- to 2,000-g fish. In contrast, on the HP diet, the respective correlations were moderate to low, revealing more genetic potential to change growth and feed intake simultaneously in opposite directions. An analysis of the predicted selection responses showed that selection solely for high DG improved feed efficiency as a correlated genetic response. Simultaneous selection for high DG and reduced DFI, in turn, may increase genetic gain in feed efficiency by a factor of 1.2 compared with selection solely for DG. However, variation for growth and feed intake and the relationships between these traits were different in different nutritional environments, leading to divergent genetic responses on the alternative diets.
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Affiliation(s)
- A Kause
- MTT Agrifood Research Finland, Animal Production Research, Animal Breeding, FIN-31600 Jokioinen, Finland.
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Serenius T, Sevon-Aimónen ML, Kause A, Mäntysaari EA, Mäki-Tanila A. Genetic associations of prolificacy with performance, carcass, meat quality, and leg conformation traits in the Finnish Landrace and Large White pig populations. J Anim Sci 2004; 82:2301-6. [PMID: 15318728 DOI: 10.2527/2004.8282301x] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The objective of this study was to estimate genetic associations of prolificacy traits with other traits under selection in the Finnish Landrace and Large White populations. The prolificacy traits evaluated were total number of piglets born, number of stillborn piglets, piglet mortality during suckling, age at first farrowing, and first farrowing interval. Genetic correlations were estimated with two performance traits (ADG and feed:gain ratio), with two carcass traits (lean percent and fat percent), with four meat quality traits (pH and L* values in longissimus dorsi and semimembranosus muscles), and with two leg conformation traits (overall leg action and buck-kneed forelegs). The data contained prolificacy information on 12,525 and 10,511 sows in the Finnish litter recording scheme and station testing records on 10,372 and 9,838 pigs in Landrace and Large White breeds, respectively. The genetic correlations were estimated by the restricted maximum likelihood method. The most substantial correlations were found between age at first farrowing and lean percent (0.19 in Landrace and 0.27 in Large White), and fat percent (-0.26 in Landrace and -0.18 in Large White), and between number of stillborn piglets and ADG (-0.38 in Landrace and -0.25 in Large White) and feed:gain (0.27 in Landrace and 0.12 in Large White). The correlations are indicative of the benefits of superior growth for piglets already at birth. Similarly, the correlations indicate that age at first farrowing is increasing owing to selection for carcass lean content. There was also clear favorable correlation between performance traits and piglet mortality from birth to weaning in Large White (r(g) was -0.43 between piglet mortality and ADG, and 0.42 between piglet mortality and feed:gain), but not in Landrace (corresponding correlations were 0.26 and -0.22). There was a general tendency that prolificacy traits were favorably correlated with performance traits, and unfavorably with carcass lean and fat percents, whereas there were no clear associations between prolificacy and meat quality or leg conformation. In conclusion, accuracy of estimated breeding values may be improved by accounting for genetic associations between prolificacy, carcass, and performance traits in a multitrait analysis.
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Affiliation(s)
- T Serenius
- MTT Agrifood Research Finland, Animal Production Research, Jokioinen, Finland.
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Serenius T, Sevón-aimonen ML, Kause A, Mäntysaari E, Mäki-tanila A. Selection potential of different prolificacy traits in the finnish landrace and large white populations. ACTA AGR SCAND A-AN 2004. [DOI: 10.1080/09064700310019082] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Kause A, Saloniemi I, Morin JP, Haukioja E, Hanhimäki S, Ruohomäki K. Seasonally varying diet quality and the quantitative genetics of development time and body size in birch feeding insects. Evolution 2001; 55:1992-2001. [PMID: 11761060 DOI: 10.1111/j.0014-3820.2001.tb01316.x] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Genetic variance-covariance structures (G), describing genetic constraints on microevolutionary changes of populations, have a central role in the current theories of life-history evolution. However, the evolution of Gs in natural environments has been poorly documented. Resource quality and quantity for many animals and plants vary seasonally, which may shape genetic architectures of their life histories. In the mountain birch-insect herbivore community, leaf quality of birch for insect herbivores declines profoundly during both leaf growth and senescence, but remains stable during midsummer. Using six sawfly species specialized on the mountain birch foliage, we tested the ways in which the seasonal variation in foliage quality of birch is related to the genetic architectures of larval development time and body size. In the species consuming mature birch leaves of stable quality, that is, without diet-imposed time constraints for development time, long development led to high body mass. This was revealed by the strongly positive phenotypic and genetic correlations between the traits. In the species consuming growing or senescing leaves, on the other hand, the rapidly deteriorating leaf quality prevented the larvae from gaining high body mass after long development. In these species, the phenotypic and genetic correlations between development time and final mass were negative or zero. In the early-summer species with strong selection for rapid development, genetic variation in development time was low. These results show that the intuitively obvious positive genetic relationship between development time and final body mass is a probable outcome only when the constraints for long development are relaxed. Our study provides the first example of a modification in guild-wide patterns in the genetic architectures brought about by seasonal variation in resource quality.
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Affiliation(s)
- A Kause
- University of Turku, Department of Biology, Section of Ecology, Finland.
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Abstract
We tested, using the sawfly Priophorus pallipes feeding on leaves of mountain birch, whether the expression of genetic (co)variation of larval development time and body size can be altered by exposing larvae to diets with differential seasonal changes in quality. In nature, larvae feed mainly on mature leaves, but occasionally they are forced to consume senescing leaves. Sixty families were assayed on three experimentally simulated diets: mature leaves of high quality, senescing leaves of rapidly declining quality, and senesced leaves of low quality. The intuitively obvious positive phenotypic and genetic correlations between development time and final mass were observed when the larvae consumed leaves of stable high quality, but low and declining food quality prevented long-growing individuals and families from achieving high final mass, switching the correlations to close to zero or negative in these treatments. The amount of genetic variation for body size showed a non-linear change across the diet quality gradient, whereas genetic variation for development time increased with decreasing diet quality. The among-trait difference in the degree reaction norms crossed along the diet gradient caused the changes in the expression of genetic (co)variation within the environments. Our results show that seasonally varying diet quality induces dramatic changes in the genetic (co)variation of development time and body size, and that simultaneous analysis of reaction norms and environment-specific expression of genetic (co)variation is necessary for the understanding of the genetic characteristics underlying the construction of phenotypes in heterogeneous environments.
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Affiliation(s)
- A Kause
- Section of Ecology, Department of Biology, University of Turku, FIN-20014 Turku, Finland.
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Abstract
Sex allocation theory predicts that in a population with a biased operational sex ratio (OSR), parents will increase their fitness by adjusting the sex ratio of their progeny towards the rarer sex, until OSR has reached a level where the overproduction of either sex no longer increases a parent's probability of having grandchildren. Furthermore, in a monogamous mating system, a biased OSR is expected to lead to lowered mean fecundity among individuals of the more abundant sex. We studied the influence of OSR on the sex ratio of newborns and on the population birth rate using an extensive data set (n = 14,420 births) from pre-industrial (1775-1850) Finland. The overall effect of current OSR on sex ratio at birth was significant, and in the majority of the 21 parishes included in this study, more sons were produced when males were rarer than females. This suggests that humans adjusted the sex ratio of their offspring in response to the local OSR to maximize the reproductive success of their progeny. Birth rate and, presumably, also population growth rate increased when the sex ratio (males:females) among reproductive age classes approached equality. However, the strength of these patterns varied across the parishes, suggesting that factors other than OSR (e.g. socioeconomic or environmental factors may also have influenced the sex ratio at birth and the birth rate.
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Affiliation(s)
- V Lummaa
- Department of Biology, University of Turku, Finland.
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