1
|
Leeuwerik AF, van Merendonk LN, de Boer MA, Wilhelm AJ, Kolkman A, Bet PM. A new approach to drug intravenous compatibility research: the case of obstetric parenteral drugs. Eur J Hosp Pharm 2023:ejhpharm-2022-003577. [PMID: 36931718 DOI: 10.1136/ejhpharm-2022-003577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Accepted: 03/07/2023] [Indexed: 03/19/2023] Open
Abstract
OBJECTIVES The product information and literature does not provide confirmation of compatibility for co-administration of all commonly used drug pairs in obstetrics. However, there is a need for co-administration of these drugs over one lumen for this group of patients. Therefore, this study focuses on Y-site compatibility. Since different conditions between clinical and laboratory settings can lead to discrepancies in results, a novel approach for drug intravenous compatibility testing was designed to reflect clinical conditions. The aim was to study the compatibility of nine commonly used drug pairs in obstetrics and to evaluate the clinical value of the designed method. METHODS The clinical situation was reflected by using different temperature ranges (20°C and 37°C), actual Y-site flow ratios, clinically relevant drug pairs and an observation time of 120 min. The clinically relevant drugs pairs include atosiban, nicardipine, amoxicillin/clavulanic acid, oxytocin, remifentanil, labetalol and magnesium sulpfate. Drug pairs were visually assessed according to the European Pharmacopoeia (Ph. Eur.) and pH was measured. When incompatibility of a drug pair seemed likely based on literature review or observed abnormalities during visual assessment, subvisual analysis was performed using a particle counter. Y-site compatibility applied for drug pairs when no visual changes occurred or when no additional particles were formed during the observation time. RESULTS Eight of the nine combinations showed no visual changes or noticeable changes in pH during the observation time. The amoxicillin/clavulanic-acid-oxytocin combination showed a colour change at 37°C at the actual Y-site flow ratio. However, subvisual particle counting showed no formation of additional particles. CONCLUSIONS Y-site compatibility was established for all tested drug pairs. The new clinical approach for analysing Y-site compatibility provides a high certainty of outcomes for clinical practice. In this way, clinical complications and use of several additional intravenous catheters can be avoided.
Collapse
Affiliation(s)
- A F Leeuwerik
- Department of Clinical Pharmacology and Pharmacy, Amsterdam University Medical Center, Amsterdam, Netherlands
| | - L N van Merendonk
- Department of Clinical Pharmacology and Pharmacy, Amsterdam University Medical Center, Amsterdam, Netherlands
| | - M A de Boer
- Department of Obstetrics and Gynaecology, Amsterdam University Medical Center, Amsterdam, Netherlands.,Reproduction and Development Research Institute, Amsterdam UMC, Amsterdam, The Netherlands
| | - A J Wilhelm
- Department of Clinical Pharmacology and Pharmacy, Amsterdam University Medical Center, Amsterdam, Netherlands
| | - A Kolkman
- Laboratory of the Dutch Pharmacists, The Royal Dutch Pharmacists Association (KNMP), The Hague, Netherlands
| | - P M Bet
- Department of Clinical Pharmacology and Pharmacy, Amsterdam University Medical Center, Amsterdam, Netherlands
| |
Collapse
|
2
|
Brunner AM, Bertelkamp C, Dingemans MML, Kolkman A, Wols B, Harmsen D, Siegers W, Martijn BJ, Oorthuizen WA, Ter Laak TL. Integration of target analyses, non-target screening and effect-based monitoring to assess OMP related water quality changes in drinking water treatment. Sci Total Environ 2020; 705:135779. [PMID: 31818566 DOI: 10.1016/j.scitotenv.2019.135779] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Revised: 11/22/2019] [Accepted: 11/24/2019] [Indexed: 05/27/2023]
Abstract
The ever-increasing production and use of chemicals lead to the occurrence of organic micro-pollutants (OMPs) in drinking water sources, and consequently the need for their removal during drinking water treatment. Due to the sheer number of OMPs, monitoring using targeted chemical analyses alone is not sufficient to assess drinking water quality as well as changes thereof during treatment. High-resolution mass spectrometry (HRMS) based non-target screening (NTS) as well as effect-based monitoring using bioassays are promising monitoring tools for a more complete assessment of water quality and treatment performance. Here, we developed a strategy that integrates data from chemical target analyses, NTS and bioassays. We applied it to the assessment of OMP related water quality changes at three drinking water treatment pilot installations. These installations included advanced oxidation processes, ultrafiltration in combination with reverse osmosis, and granular activated carbon filtration. OMPs relevant for the drinking water sector were spiked into the water treated in these installations. Target analyses, NTS and bioassays were performed on samples from all three installations. The NTS data was screened for predicted and known transformation products of the spike-in compounds. In parallel, trend profiles of NTS features were evaluated using multivariate analysis methods. Through integration of the chemical data with the biological effect-based results potential toxicity was accounted for during prioritization. Together, the synergy of the three analytical methods allowed the monitoring of OMPs and transformation products, as well as the integrative biological effects of the mixture of chemicals. Through efficient analysis, visualization and interpretation of complex data, the developed strategy enabled to assess water quality and the impact of water treatment from multiple perspectives. Such information could not be obtained by any of the three methods alone. The developed strategy thereby provides drinking water companies with an integrative tool for comprehensive water quality assessment.
Collapse
Affiliation(s)
| | | | | | | | - Bas Wols
- KWR Water Research Institute, Nieuwegein, the Netherlands
| | - Danny Harmsen
- KWR Water Research Institute, Nieuwegein, the Netherlands
| | - Wolter Siegers
- KWR Water Research Institute, Nieuwegein, the Netherlands
| | | | | | - Thomas L Ter Laak
- KWR Water Research Institute, Nieuwegein, the Netherlands; Univerisity of Amsterdam, Amsterdam, the Netherlands
| |
Collapse
|
3
|
Vaudevire E, Radmanesh F, Kolkman A, Vughs D, Cornelissen E, Post J, van der Meer W. Fate and removal of trace pollutants from an anion exchange spent brine during the recovery process of natural organic matter and salts. Water Res 2019; 154:34-44. [PMID: 30771705 DOI: 10.1016/j.watres.2019.01.042] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2018] [Revised: 12/21/2018] [Accepted: 01/28/2019] [Indexed: 06/09/2023]
Abstract
The results of this sampling campaign on pilot scale processes aim to evaluate the occurrence and behavior of trace organic micro-pollutants and metal elements during anion exchange treatment of surface water and the subsequent treatment of generated spent brine with two types of electrodialysis membrane pairs. This knowledge is relevant to assess the quality and reusability of secondary products created during brine treatment; specifically the excess of sodium chloride to be recycled onsite and the natural organic matter, mostly consisting of humic substances, which find multiple applications in the agricultural industry. This study highlights that (1) the attachment mechanism of organic micro-pollutants to anion exchange resin occurs through electrostatic interaction and the subsequent transfer through ion exchange membranes is restricted by size exclusion; and (2) the complexation of trace metals compounds with the natural organic matter partly explains their removal by anion exchange. Complexes remain stable during treatment of the brine with electrodialysis.
Collapse
Affiliation(s)
- Elisabeth Vaudevire
- PWN Technologies, Dijkweg 1, 1916HA, Andijk, the Netherlands; Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA, Leeuwarden, the Netherlands; Department of Biotechnologies, TU Delft, Van der Maasweg 9, 2629 HZ, Delft, the Netherlands.
| | - Farzaneh Radmanesh
- University of Twente, Faculty of Science and Technology, De Horst 2, 7522LW, Enschede, the Netherlands
| | - Annemieke Kolkman
- KWR Water Cycle Research Institute, Groningenhaven 7, 3433 PE, Nieuwegein, the Netherlands
| | - Dennis Vughs
- KWR Water Cycle Research Institute, Groningenhaven 7, 3433 PE, Nieuwegein, the Netherlands
| | - Emile Cornelissen
- KWR Water Cycle Research Institute, Groningenhaven 7, 3433 PE, Nieuwegein, the Netherlands; Particle and Interfacial Technology Group, Ghent University, Coupure Links 653, B-9000, Ghent, Belgium; Singapore Membrane Technology Centre, Nanyang Environment and Water Research Institute, Nanyang Technological University, Singapore, 637141, Singapore
| | - Jan Post
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9, 8911 MA, Leeuwarden, the Netherlands
| | - Walter van der Meer
- University of Twente, Faculty of Science and Technology, De Horst 2, 7522LW, Enschede, the Netherlands; Oasen NV, Nieuwe Gouwe O.Z. 3, 2801 SB, Gouda, the Netherlands
| |
Collapse
|
4
|
Brunner AM, Vughs D, Siegers W, Bertelkamp C, Hofman-Caris R, Kolkman A, Ter Laak T. Monitoring transformation product formation in the drinking water treatments rapid sand filtration and ozonation. Chemosphere 2019; 214:801-811. [PMID: 30296768 DOI: 10.1016/j.chemosphere.2018.09.140] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2018] [Revised: 07/30/2018] [Accepted: 09/24/2018] [Indexed: 06/08/2023]
Abstract
Transformation products (TPs) can be formed from organic micropollutants in the water cycle through both biological and technological processes. Despite the TPs' potentially altered toxicity compared to their parent compounds, transformation processes are not routinely monitored, and in particular those induced by drinking water treatment remain elusive. This lack of information is mainly due to the technical challenges in analyzing TPs, which are often unknown compounds occurring in low concentrations. Their analysis requires sophisticated analytical techniques such as non-target screening (NTS) based on high-resolution tandem mass spectrometry (HRMS/MS) methods combined with novel data analysis approaches. Here, we addressed the challenges of TP analysis and the scarcity of TP research concerning studies in drinking water. We performed lab-scale experiments to monitor TP formation of three organic micropollutants prevalent in drinking water sources, i.e. carbamazepine, clofibric acid and metolachlor, during rapid sand filtration and ozonation, two readily applied biotic and abiotic drinking water treatments, respectively. To facilitate TP identification in the NTS data, halogenated and/or isotopically labeled parent compounds were used, revealing potential TPs through their isotopic patterns. The experimental results showed that degradation of the parent compounds and TP formation were treatment and compound specific. In silico TP prediction and literature mining enabled suspect screening of the non-target data and thereby significantly enhanced TP identification. Overall, the developed workflow enables an efficient and more comprehensive assessment of drinking water quality changes during water treatment.
Collapse
Affiliation(s)
- Andrea Mizzi Brunner
- KWR Watercycle Research Institute, P.O. Box 1072, 3430 BB Nieuwegein, the Netherlands.
| | - Dennis Vughs
- KWR Watercycle Research Institute, P.O. Box 1072, 3430 BB Nieuwegein, the Netherlands
| | - Wolter Siegers
- KWR Watercycle Research Institute, P.O. Box 1072, 3430 BB Nieuwegein, the Netherlands
| | - Cheryl Bertelkamp
- KWR Watercycle Research Institute, P.O. Box 1072, 3430 BB Nieuwegein, the Netherlands
| | - Roberta Hofman-Caris
- KWR Watercycle Research Institute, P.O. Box 1072, 3430 BB Nieuwegein, the Netherlands
| | - Annemieke Kolkman
- KWR Watercycle Research Institute, P.O. Box 1072, 3430 BB Nieuwegein, the Netherlands
| | - Thomas Ter Laak
- KWR Watercycle Research Institute, P.O. Box 1072, 3430 BB Nieuwegein, the Netherlands
| |
Collapse
|
5
|
Tousova Z, Oswald P, Slobodnik J, Blaha L, Muz M, Hu M, Brack W, Krauss M, Di Paolo C, Tarcai Z, Seiler TB, Hollert H, Koprivica S, Ahel M, Schollée JE, Hollender J, Suter MJF, Hidasi AO, Schirmer K, Sonavane M, Ait-Aissa S, Creusot N, Brion F, Froment J, Almeida AC, Thomas K, Tollefsen KE, Tufi S, Ouyang X, Leonards P, Lamoree M, Torrens VO, Kolkman A, Schriks M, Spirhanzlova P, Tindall A, Schulze T. Corrigendum to "European demonstration program on the effect-based and chemical identification and monitoring of organic pollutants in European surface waters" [Sci. Total Environ. 601-602 (2017) 1849-1868]. Sci Total Environ 2018; 635:1620-1621. [PMID: 29739659 DOI: 10.1016/j.scitotenv.2018.04.356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Affiliation(s)
- Zuzana Tousova
- Environmental Institute (EI), Okruzna 784/42, 972 41 Kos, Slovak Republic; Masaryk University, Faculty of Science, RECETOX, Kamenice 753/5, 625 00 Brno, Czech Republic
| | - Peter Oswald
- Environmental Institute (EI), Okruzna 784/42, 972 41 Kos, Slovak Republic
| | - Jaroslav Slobodnik
- Environmental Institute (EI), Okruzna 784/42, 972 41 Kos, Slovak Republic
| | - Ludek Blaha
- Masaryk University, Faculty of Science, RECETOX, Kamenice 753/5, 625 00 Brno, Czech Republic
| | - Melis Muz
- UFZ Helmholtz-Centre for Environmental Research, Permoserstrasse 15, 04318 Leipzig, Germany; RWTH Aachen University, Inst. for Environmental Research (Biology V), Department of Ecosystem Analysis, Worringerweg 1, 52074 Aachen, Germany
| | - Meng Hu
- UFZ Helmholtz-Centre for Environmental Research, Permoserstrasse 15, 04318 Leipzig, Germany; RWTH Aachen University, Inst. for Environmental Research (Biology V), Department of Ecosystem Analysis, Worringerweg 1, 52074 Aachen, Germany
| | - Werner Brack
- UFZ Helmholtz-Centre for Environmental Research, Permoserstrasse 15, 04318 Leipzig, Germany; RWTH Aachen University, Inst. for Environmental Research (Biology V), Department of Ecosystem Analysis, Worringerweg 1, 52074 Aachen, Germany
| | - Martin Krauss
- UFZ Helmholtz-Centre for Environmental Research, Permoserstrasse 15, 04318 Leipzig, Germany
| | - Carolina Di Paolo
- RWTH Aachen University, Inst. for Environmental Research (Biology V), Department of Ecosystem Analysis, Worringerweg 1, 52074 Aachen, Germany
| | - Zsolt Tarcai
- RWTH Aachen University, Inst. for Environmental Research (Biology V), Department of Ecosystem Analysis, Worringerweg 1, 52074 Aachen, Germany
| | - Thomas-Benjamin Seiler
- RWTH Aachen University, Inst. for Environmental Research (Biology V), Department of Ecosystem Analysis, Worringerweg 1, 52074 Aachen, Germany
| | - Henner Hollert
- RWTH Aachen University, Inst. for Environmental Research (Biology V), Department of Ecosystem Analysis, Worringerweg 1, 52074 Aachen, Germany
| | - Sanja Koprivica
- Rudjer Boskovic Institute, Bijenicka cesta 54, 10000 Zagreb, Croatia
| | - Marijan Ahel
- Rudjer Boskovic Institute, Bijenicka cesta 54, 10000 Zagreb, Croatia
| | - Jennifer E Schollée
- Eawag, Ueberlandstrasse 133, 8600 Dubendorf, Switzerland; Institute of Biogeochemistry and Pollutant Dynamics, ETH Zurich, 8092 Zurich, Switzerland
| | - Juliane Hollender
- Eawag, Ueberlandstrasse 133, 8600 Dubendorf, Switzerland; Institute of Biogeochemistry and Pollutant Dynamics, ETH Zurich, 8092 Zurich, Switzerland
| | - Marc J-F Suter
- Eawag, Ueberlandstrasse 133, 8600 Dubendorf, Switzerland; Institute of Biogeochemistry and Pollutant Dynamics, ETH Zurich, 8092 Zurich, Switzerland
| | - Anita O Hidasi
- Eawag, Ueberlandstrasse 133, 8600 Dubendorf, Switzerland; EPF Lausanne, School of Architecture, Civil and Environmental Engineering, 1015 Lausanne, Switzerland
| | - Kristin Schirmer
- Eawag, Ueberlandstrasse 133, 8600 Dubendorf, Switzerland; Institute of Biogeochemistry and Pollutant Dynamics, ETH Zurich, 8092 Zurich, Switzerland; EPF Lausanne, School of Architecture, Civil and Environmental Engineering, 1015 Lausanne, Switzerland
| | - Manoj Sonavane
- Institut National de l'Environnement Industriel et des Risques (INERIS), Unité ECOT, Parc ALATA - BP2, 60550 Verneuil-en-Halatte, France
| | - Selim Ait-Aissa
- Institut National de l'Environnement Industriel et des Risques (INERIS), Unité ECOT, Parc ALATA - BP2, 60550 Verneuil-en-Halatte, France
| | - Nicolas Creusot
- Institut National de l'Environnement Industriel et des Risques (INERIS), Unité ECOT, Parc ALATA - BP2, 60550 Verneuil-en-Halatte, France
| | - Francois Brion
- Institut National de l'Environnement Industriel et des Risques (INERIS), Unité ECOT, Parc ALATA - BP2, 60550 Verneuil-en-Halatte, France
| | - Jean Froment
- UFZ Helmholtz-Centre for Environmental Research, Permoserstrasse 15, 04318 Leipzig, Germany; Norwegian Institute for Water Research (NIVA), Ecotoxicology and Risk Assessment, Gaustadallèen 21, NO-0349 Oslo, Norway
| | - Ana Catarina Almeida
- Norwegian Institute for Water Research (NIVA), Ecotoxicology and Risk Assessment, Gaustadallèen 21, NO-0349 Oslo, Norway
| | - Kevin Thomas
- Norwegian Institute for Water Research (NIVA), Ecotoxicology and Risk Assessment, Gaustadallèen 21, NO-0349 Oslo, Norway; Queensland Alliance for Environmental Health Sciences (QAEHS), The University of Queensland, 39 Keesels Road, Coopers Plains 4108, Australia
| | - Knut Erik Tollefsen
- Norwegian Institute for Water Research (NIVA), Ecotoxicology and Risk Assessment, Gaustadallèen 21, NO-0349 Oslo, Norway; Norwegian University of Life Sciences (NMBU), Faculty of Environmental Science & Technology, Dept. for Environmental Sciences, Post box 5003, N-1432 Ås, Norway
| | - Sara Tufi
- Vrije Universiteit Amsterdam, Department Environment & Health, De Boelelaan 1087, 1081 HV, Amsterdam, The Netherlands
| | - Xiyu Ouyang
- Vrije Universiteit Amsterdam, Department Environment & Health, De Boelelaan 1087, 1081 HV, Amsterdam, The Netherlands
| | - Pim Leonards
- Vrije Universiteit Amsterdam, Department Environment & Health, De Boelelaan 1087, 1081 HV, Amsterdam, The Netherlands
| | - Marja Lamoree
- Vrije Universiteit Amsterdam, Department Environment & Health, De Boelelaan 1087, 1081 HV, Amsterdam, The Netherlands
| | - Victoria Osorio Torrens
- KWR, Watercycle Research Institute, Department of Chemical Water, Quality and Health, P.O. Box 1072, 3430 BB Nieuwegein, The Netherlands
| | - Annemieke Kolkman
- KWR, Watercycle Research Institute, Department of Chemical Water, Quality and Health, P.O. Box 1072, 3430 BB Nieuwegein, The Netherlands
| | - Merijn Schriks
- KWR, Watercycle Research Institute, Department of Chemical Water, Quality and Health, P.O. Box 1072, 3430 BB Nieuwegein, The Netherlands; Vitens drinking water company, P.O Box 1205, 8001 BE Zwolle, The Netherlands
| | | | - Andrew Tindall
- WatchFrog S. A., 1 rue Pierre Fontaine, 91000 Evry, France
| | - Tobias Schulze
- UFZ Helmholtz-Centre for Environmental Research, Permoserstrasse 15, 04318 Leipzig, Germany.
| |
Collapse
|
6
|
Osorio V, Schriks M, Vughs D, de Voogt P, Kolkman A. A novel sample preparation procedure for effect-directed analysis of micro-contaminants of emerging concern in surface waters. Talanta 2018; 186:527-537. [DOI: 10.1016/j.talanta.2018.04.058] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2018] [Revised: 04/13/2018] [Accepted: 04/19/2018] [Indexed: 10/17/2022]
|
7
|
Emke E, Vughs D, Kolkman A, de Voogt P. Wastewater-based epidemiology generated forensic information: Amphetamine synthesis waste and its impact on a small sewage treatment plant. Forensic Sci Int 2018; 286:e1-e7. [PMID: 29602535 DOI: 10.1016/j.forsciint.2018.03.019] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2017] [Revised: 01/18/2018] [Accepted: 03/09/2018] [Indexed: 11/27/2022]
Abstract
Chemical analysis of domestic wastewater can reveal the presence of illicit drugs either consumed by a population or directly discharged into the sewer system. In the search for causes of a recent malfunctioning of a small domestic wastewater treatment plant aberrantly high loads of amphetamine were observed in the influent of the plant. Direct discharges of chemical waste from illegal production sites were suspected to be the cause. Illegal manufacturing of amphetamines creates substantial amounts of chemical waste. Here we show that fly-tipping of chemical waste originating from an amphetamine synthesis in the catchment of a small sewage treatment plant resulted in failure of the treatment process. Target analysis of drugs of abuse and non-target screening using high resolution mass spectrometry provided evidence for the presence of amphetamine produced from the precursor 1-phenylpropan-2-one by the Leuckart process through specific synthesis markers. Furthermore the identity and presence of the pre-precursor 3-oxo-2-phenylbutanamide was confirmed and a route specific marker was proposed. This is the first study that demonstrates that non-target screening of wastewater can identify intermediates, impurities and by products of the synthesis routes used in illegal manufacturing of amphetamine. The profiles of chemicals thus obtained can be used in tracking productions sites within the corresponding sewer catchment.
Collapse
Affiliation(s)
- Erik Emke
- KWR Watercycle Research Institute, Chemical Water Quality and Health, P.O. Box 1072, 3430 BB Nieuwegein, The Netherlands.
| | - Dennis Vughs
- KWR Watercycle Research Institute, Laboratory for Materials Research and Chemical Analysis, P.O. Box 1072, 3430 BB Nieuwegein, The Netherlands
| | - Annemieke Kolkman
- KWR Watercycle Research Institute, Laboratory for Materials Research and Chemical Analysis, P.O. Box 1072, 3430 BB Nieuwegein, The Netherlands
| | - Pim de Voogt
- KWR Watercycle Research Institute, Chemical Water Quality and Health, P.O. Box 1072, 3430 BB Nieuwegein, The Netherlands; Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, P.O. Box 94248, 1090 GE Amsterdam, The Netherlands
| |
Collapse
|
8
|
Vughs D, Baken KA, Kolkman A, Martijn AJ, de Voogt P. Application of effect-directed analysis to identify mutagenic nitrogenous disinfection by-products of advanced oxidation drinking water treatment. Environ Sci Pollut Res Int 2018; 25:3951-3964. [PMID: 27447472 DOI: 10.1007/s11356-016-7252-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2016] [Accepted: 07/14/2016] [Indexed: 05/09/2023]
Abstract
Advanced oxidation processes are important barriers for organic micropollutants in (drinking) water treatment. It is however known that medium pressure UV/H2O2 treatment may lead to mutagenicity in the Ames test, which is no longer present after granulated activated carbon (GAC) filtration. Many nitrogen-containing disinfection by-products (N-DBPs) result from the reaction of photolysis products of nitrate with (photolysis products of) natural organic material (NOM) during medium pressure UV treatment of water. Identification of the N-DBPs and the application of effect-directed analysis to combine chemical screening results with biological activity would provide more insight into the relation of specific N-DBPs with the observed mutagenicity and was the subject of this study. To this end, fractions of medium pressure UV-treated and untreated water extracts were prepared using preparative HPLC and tested using the Ames fluctuation test. In addition, high-resolution mass spectrometry was performed on all fractions to assess the presence of N-DBPs. Based on toxicity data and read across analysis, we could identify five N-DBPs that are potentially genotoxic and were present in relatively high concentrations in the fractions in which mutagenicity was observed. The results of this study offer opportunities to further evaluate the identity and potential health concern of N-DBPs formed during advanced oxidation UV drinking water treatment.
Collapse
Affiliation(s)
- D Vughs
- KWR Watercycle Research Institute, P.O. Box 1072, 3430 BB, Nieuwegein, The Netherlands
| | - K A Baken
- KWR Watercycle Research Institute, P.O. Box 1072, 3430 BB, Nieuwegein, The Netherlands.
| | - A Kolkman
- KWR Watercycle Research Institute, P.O. Box 1072, 3430 BB, Nieuwegein, The Netherlands
| | - A J Martijn
- PWN Water Supply Company North Holland, P.O. Box 2100, 1990 AC, Velserbroek, The Netherlands
| | - P de Voogt
- KWR Watercycle Research Institute, P.O. Box 1072, 3430 BB, Nieuwegein, The Netherlands
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, P.O. Box 94248, 1090 GE, Amsterdam, The Netherlands
| |
Collapse
|
9
|
Tousova Z, Oswald P, Slobodnik J, Blaha L, Muz M, Hu M, Brack W, Krauss M, Di Paolo C, Tarcai Z, Seiler TB, Hollert H, Koprivica S, Ahel M, Schollée JE, Hollender J, Suter MJF, Hidasi AO, Schirmer K, Sonavane M, Ait-Aissa S, Creusot N, Brion F, Froment J, Almeida AC, Thomas K, Tollefsen KE, Tufi S, Ouyang X, Leonards P, Lamoree M, Torrens VO, Kolkman A, Schriks M, Spirhanzlova P, Tindall A, Schulze T. European demonstration program on the effect-based and chemical identification and monitoring of organic pollutants in European surface waters. Sci Total Environ 2017. [PMID: 28629112 DOI: 10.1016/j.scitotenv.2017.06.032] [Citation(s) in RCA: 112] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Growing concern about the adverse environmental and human health effects of a wide range of micropollutants requires the development of novel tools and approaches to enable holistic monitoring of their occurrence, fate and effects in the aquatic environment. A European-wide demonstration program (EDP) for effect-based monitoring of micropollutants in surface waters was carried out within the Marie Curie Initial Training Network EDA-EMERGE. The main objectives of the EDP were to apply a simplified protocol for effect-directed analysis, to link biological effects to target compounds and to estimate their risk to aquatic biota. Onsite large volume solid phase extraction of 50 L of surface water was performed at 18 sampling sites in four European river basins. Extracts were subjected to effect-based analysis (toxicity to algae, fish embryo toxicity, neurotoxicity, (anti-)estrogenicity, (anti-)androgenicity, glucocorticoid activity and thyroid activity), to target analysis (151 organic micropollutants) and to nontarget screening. The most pronounced effects were estrogenicity, toxicity to algae and fish embryo toxicity. In most bioassays, major portions of the observed effects could not be explained by target compounds, especially in case of androgenicity, glucocorticoid activity and fish embryo toxicity. Estrone and nonylphenoxyacetic acid were identified as the strongest contributors to estrogenicity, while herbicides, with a minor contribution from other micropollutants, were linked to the observed toxicity to algae. Fipronil and nonylphenol were partially responsible for the fish embryo toxicity. Within the EDP, 21 target compounds were prioritized on the basis of their frequency and extent of exceedance of predicted no effect concentrations. The EDP priority list included 6 compounds, which are already addressed by European legislation, and 15 micropollutants that may be important for future monitoring of surface waters. The study presents a novel simplified protocol for effect-based monitoring and draws a comprehensive picture of the surface water status across Europe.
Collapse
Affiliation(s)
- Zuzana Tousova
- Environmental Institute (EI), Okruzna 784/42, 972 41 Kos, Slovak Republic; Masaryk University, Faculty of Science, RECETOX, Kamenice 753/5, 625 00 Brno, Czech Republic
| | - Peter Oswald
- Environmental Institute (EI), Okruzna 784/42, 972 41 Kos, Slovak Republic
| | - Jaroslav Slobodnik
- Environmental Institute (EI), Okruzna 784/42, 972 41 Kos, Slovak Republic
| | - Ludek Blaha
- Masaryk University, Faculty of Science, RECETOX, Kamenice 753/5, 625 00 Brno, Czech Republic
| | - Melis Muz
- UFZ Helmholtz Centre for Environmental Research GmbH, Permoserstrasse 15, 04318 Leipzig, Germany; RWTH Aachen University, Institute for Environmental Research (Biology V), Department of Ecosystem Analysis, Worringerweg 1, 52074 Aachen, Germany
| | - Meng Hu
- UFZ Helmholtz Centre for Environmental Research GmbH, Permoserstrasse 15, 04318 Leipzig, Germany; RWTH Aachen University, Institute for Environmental Research (Biology V), Department of Ecosystem Analysis, Worringerweg 1, 52074 Aachen, Germany
| | - Werner Brack
- UFZ Helmholtz Centre for Environmental Research GmbH, Permoserstrasse 15, 04318 Leipzig, Germany; RWTH Aachen University, Institute for Environmental Research (Biology V), Department of Ecosystem Analysis, Worringerweg 1, 52074 Aachen, Germany
| | - Martin Krauss
- UFZ Helmholtz Centre for Environmental Research GmbH, Permoserstrasse 15, 04318 Leipzig, Germany
| | - Carolina Di Paolo
- RWTH Aachen University, Institute for Environmental Research (Biology V), Department of Ecosystem Analysis, Worringerweg 1, 52074 Aachen, Germany
| | - Zsolt Tarcai
- RWTH Aachen University, Institute for Environmental Research (Biology V), Department of Ecosystem Analysis, Worringerweg 1, 52074 Aachen, Germany
| | - Thomas-Benjamin Seiler
- RWTH Aachen University, Institute for Environmental Research (Biology V), Department of Ecosystem Analysis, Worringerweg 1, 52074 Aachen, Germany
| | - Henner Hollert
- RWTH Aachen University, Institute for Environmental Research (Biology V), Department of Ecosystem Analysis, Worringerweg 1, 52074 Aachen, Germany
| | - Sanja Koprivica
- Rudjer Boskovic Institute, Bijenicka cesta 54, 10000 Zagreb, Croatia
| | - Marijan Ahel
- Rudjer Boskovic Institute, Bijenicka cesta 54, 10000 Zagreb, Croatia
| | - Jennifer E Schollée
- Eawag, Überlandstrasse 133, 8600 Dübendorf, Switzerland; Institute of Biogeochemistry and Pollutant Dynamics, ETH Zürich, 8092 Zürich, Switzerland
| | - Juliane Hollender
- Eawag, Überlandstrasse 133, 8600 Dübendorf, Switzerland; Institute of Biogeochemistry and Pollutant Dynamics, ETH Zürich, 8092 Zürich, Switzerland
| | - Marc J-F Suter
- Eawag, Überlandstrasse 133, 8600 Dübendorf, Switzerland; Institute of Biogeochemistry and Pollutant Dynamics, ETH Zürich, 8092 Zürich, Switzerland
| | - Anita O Hidasi
- Eawag, Überlandstrasse 133, 8600 Dübendorf, Switzerland; EPF Lausanne, School of Architecture, Civil and Environmental Engineering, 1015 Lausanne, Switzerland
| | - Kristin Schirmer
- Eawag, Überlandstrasse 133, 8600 Dübendorf, Switzerland; Institute of Biogeochemistry and Pollutant Dynamics, ETH Zürich, 8092 Zürich, Switzerland; EPF Lausanne, School of Architecture, Civil and Environmental Engineering, 1015 Lausanne, Switzerland
| | - Manoj Sonavane
- Institut National de l'Environnement Industriel et des Risques (INERIS), Unité ECOT, Parc ALATA - BP2, 60550 Verneuil-en-Halatte, France
| | - Selim Ait-Aissa
- Institut National de l'Environnement Industriel et des Risques (INERIS), Unité ECOT, Parc ALATA - BP2, 60550 Verneuil-en-Halatte, France
| | - Nicolas Creusot
- Institut National de l'Environnement Industriel et des Risques (INERIS), Unité ECOT, Parc ALATA - BP2, 60550 Verneuil-en-Halatte, France
| | - Francois Brion
- Institut National de l'Environnement Industriel et des Risques (INERIS), Unité ECOT, Parc ALATA - BP2, 60550 Verneuil-en-Halatte, France
| | - Jean Froment
- UFZ Helmholtz Centre for Environmental Research GmbH, Permoserstrasse 15, 04318 Leipzig, Germany; Norwegian Institute for Water Research (NIVA), Ecotoxicology and Risk Assessment, Gaustadallèen 21, NO-0349 Oslo, Norway
| | - Ana Catarina Almeida
- Norwegian Institute for Water Research (NIVA), Ecotoxicology and Risk Assessment, Gaustadallèen 21, NO-0349 Oslo, Norway
| | - Kevin Thomas
- Norwegian Institute for Water Research (NIVA), Ecotoxicology and Risk Assessment, Gaustadallèen 21, NO-0349 Oslo, Norway; Queensland Alliance for Environmental Health Sciences (QAEHS), The University of Queensland, 39 Keesels Road, Coopers Plains 4108, Australia
| | - Knut Erik Tollefsen
- Norwegian Institute for Water Research (NIVA), Ecotoxicology and Risk Assessment, Gaustadallèen 21, NO-0349 Oslo, Norway; Norwegian University of Life Sciences (NMBU), Faculty of Environmental Science & Technology, Dept. for Environmental Sciences, Post Box 5003, N-1432 Ås, Norway
| | - Sara Tufi
- Vrije Universiteit Amsterdam, Department Environment & Health, De Boelelaan 1087, 1081 HV Amsterdam, The Netherlands
| | - Xiyu Ouyang
- Vrije Universiteit Amsterdam, Department Environment & Health, De Boelelaan 1087, 1081 HV Amsterdam, The Netherlands
| | - Pim Leonards
- Vrije Universiteit Amsterdam, Department Environment & Health, De Boelelaan 1087, 1081 HV Amsterdam, The Netherlands
| | - Marja Lamoree
- Vrije Universiteit Amsterdam, Department Environment & Health, De Boelelaan 1087, 1081 HV Amsterdam, The Netherlands
| | - Victoria Osorio Torrens
- KWR, Watercycle Research Institute, Department of Chemical Water, Quality and Health, P.O. Box 1072, 3430 BB Nieuwegein, The Netherlands
| | - Annemieke Kolkman
- KWR, Watercycle Research Institute, Department of Chemical Water, Quality and Health, P.O. Box 1072, 3430 BB Nieuwegein, The Netherlands
| | - Merijn Schriks
- KWR, Watercycle Research Institute, Department of Chemical Water, Quality and Health, P.O. Box 1072, 3430 BB Nieuwegein, The Netherlands; Vitens drinking water company, P.O Box 1205, 8001 BE Zwolle, The Netherlands
| | | | - Andrew Tindall
- WatchFrog S. A., 1 rue Pierre Fontaine, 91000 Evry, France
| | - Tobias Schulze
- UFZ Helmholtz Centre for Environmental Research GmbH, Permoserstrasse 15, 04318 Leipzig, Germany.
| |
Collapse
|
10
|
Kolkman A, Martijn BJ, Vughs D, Baken KA, van Wezel AP. Tracing nitrogenous disinfection byproducts after medium pressure UV water treatment by stable isotope labeling and high resolution mass spectrometry. Environ Sci Technol 2015; 49:4458-4465. [PMID: 25760315 DOI: 10.1021/es506063h] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Advanced oxidation processes are important barriers for organic micropollutants (e.g., pharmaceuticals, pesticides) in (drinking) water treatment. Studies indicate that medium pressure (MP) UV/H2O2 treatment leads to a positive response in Ames mutagenicity tests, which is then removed after granulated activated carbon (GAC) filtration. The formed potentially mutagenic substances were hitherto not identified and may result from the reaction of photolysis products of nitrate with (photolysis products of) natural organic material (NOM). In this study we present an innovative approach to trace the formation of disinfection byproducts (DBPs) of MP UV water treatment, based on stable isotope labeled nitrate combined with high resolution mass spectrometry. It was shown that after MP UV treatment of artificial water containing NOM and nitrate, multiple nitrogen containing substances were formed. In total 84 N-DBPs were detected at individual concentrations between 1 to 135 ng/L bentazon-d6 equivalents, with a summed concentration of 1.2 μg/L bentazon-d6 equivalents. The chemical structures of three byproducts were confirmed. Screening for the 84 N-DBPs in water samples from a full-scale drinking water treatment plant based on MP UV/H2O2 treatment showed that 22 of the N-DBPs found in artificial water were also detected in real water samples.
Collapse
Affiliation(s)
- Annemieke Kolkman
- †KWR Watercycle Research Institute, P.O. Box 1072, 3430 BB Nieuwegein, The Netherlands
| | - Bram J Martijn
- ‡PWN Water Supply Company North Holland, P.O. Box 2046, 1990 AA, Velserbroek, The Netherlands
| | - Dennis Vughs
- †KWR Watercycle Research Institute, P.O. Box 1072, 3430 BB Nieuwegein, The Netherlands
| | - Kirsten A Baken
- †KWR Watercycle Research Institute, P.O. Box 1072, 3430 BB Nieuwegein, The Netherlands
| | - Annemarie P van Wezel
- †KWR Watercycle Research Institute, P.O. Box 1072, 3430 BB Nieuwegein, The Netherlands
- §Copernicus Institute of Sustainable Development, Utrecht University, Heidelberglaan 2, 3584 CS, Utrecht, The Netherlands
| |
Collapse
|
11
|
Kolkman A, Schriks M, Brand W, Bäuerlein PS, van der Kooi MME, van Doorn RH, Emke E, Reus AA, van der Linden SC, de Voogt P, Heringa MB. Sample preparation for combined chemical analysis and in vitro bioassay application in water quality assessment. Environ Toxicol Pharmacol 2013; 36:1291-1303. [PMID: 24216068 DOI: 10.1016/j.etap.2013.10.009] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2013] [Revised: 10/09/2013] [Accepted: 10/13/2013] [Indexed: 06/02/2023]
Abstract
The combination of in vitro bioassays and chemical screening can provide a powerful toolbox to determine biologically relevant compounds in water extracts. In this study, a sample preparation method is evaluated for the suitability for both chemical analysis and in vitro bioassays. A set of 39 chemicals were spiked to surface water, which were extracted using Oasis MCX cartridges. The extracts were chemically analyzed by liquid chromatography linear ion trap Orbitrap analysis and recoveries appeared to be on average 61% Compounds with logK(ow) values in the range between 0 and 4 are recovered well using this method. In a next step, the same extracts were tested for genotoxic activity using the Comet assay and Ames fluctuation test and for specific endocrine receptor activation using a panel of CALUX assays, for estrogenic (ER), androgenic (AR), glucocorticoid (GR), progestagenic (PR), and thyroidogenic (TR) agonistic activities. The results of the genotoxicity assays indicated that spiked genotoxic compounds were preserved during sample preparation. The measured responses of the GR CALUX and ER CALUX assays were similar to the predicted responses. The measured responses in the AR CALUX and PR CALUX assays were much lower than expected from the analytical concentration, probably due to antagonistic effects of some spiked compounds. Overall, the presented sample preparation method seems to be suitable for both chemical analysis and specific in vitro bioassay applications.
Collapse
Affiliation(s)
- Annemieke Kolkman
- KWR Watercycle Research Institute, P.O. Box 1072, 3430 BB Nieuwegein, The Netherlands.
| | | | | | | | | | | | | | | | | | | | | |
Collapse
|
12
|
Kolkman A, Emke E, Bäuerlein PS, Carboni A, Tran DT, ter Laak TL, van Wezel AP, de Voogt P. Analysis of (Functionalized) Fullerenes in Water Samples by Liquid Chromatography Coupled to High-Resolution Mass Spectrometry. Anal Chem 2013; 85:5867-74. [DOI: 10.1021/ac400619g] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Annemieke Kolkman
- KWR Watercycle Research Institute, P.O.
Box 1072, 3430 BB Nieuwegein, The Netherlands
| | - Erik Emke
- KWR Watercycle Research Institute, P.O.
Box 1072, 3430 BB Nieuwegein, The Netherlands
| | - Patrick S. Bäuerlein
- KWR Watercycle Research Institute, P.O.
Box 1072, 3430 BB Nieuwegein, The Netherlands
| | - Andrea Carboni
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Sciencepark 904, 1098 XH Amsterdam,
The Netherlands
| | - Diem Truc Tran
- KWR Watercycle Research Institute, P.O.
Box 1072, 3430 BB Nieuwegein, The Netherlands
| | - Thomas L. ter Laak
- KWR Watercycle Research Institute, P.O.
Box 1072, 3430 BB Nieuwegein, The Netherlands
| | | | - Pim de Voogt
- KWR Watercycle Research Institute, P.O.
Box 1072, 3430 BB Nieuwegein, The Netherlands
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Sciencepark 904, 1098 XH Amsterdam,
The Netherlands
| |
Collapse
|
13
|
ter Laak TL, Puijker LM, van Leerdam JA, Raat KJ, Kolkman A, de Voogt P, van Wezel AP. Broad target chemical screening approach used as tool for rapid assessment of groundwater quality. Sci Total Environ 2012; 427-428:308-313. [PMID: 22551937 DOI: 10.1016/j.scitotenv.2012.04.013] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2011] [Revised: 03/31/2012] [Accepted: 04/04/2012] [Indexed: 05/31/2023]
Abstract
The chemical water quality is often assessed by screening for a limited set of target chemicals. This 'conventional' target analysis approach inevitably misses chemicals present in the samples. In this study a 'broad' target screening approach for water quality assessment using high resolution and accurate mass spectrometry (HR MS) was applied to detect a wide variety of organic chemicals in 42 groundwater samples. In this approach, both known and unidentified chemicals observed in previous samples define the training set for the analysis of future samples and, additionally, new samples can be used to extend the training set. Nearly 400 chemicals were observed in the samples, of which 82 were known and more than 313 are of unknown identity. The obtained results were interpreted in relation to the source characteristics and land use. Groundwater that was affected by landfills showed the highest total MS response (ion counts) and most individual chemicals and was therefore considered most contaminated. Furthermore, river bank filtrated water was generally more contaminated than phreatic groundwater and groundwater from (semi)confined aquifers was most pristine. Additionally, industrial chemicals were more frequently observed in river bank filtrated water and pesticides were more frequently observed in water originating from rural areas. The 'broad' target screening approach for both known and unidentified chemicals does provide more information on the over-all water quality than 'conventional' target analysis.
Collapse
Affiliation(s)
- Thomas L ter Laak
- KWR Watercycle Research Institute, P.O. Box 1072, 3430 BB, Nieuwegein, The Netherlands.
| | | | | | | | | | | | | |
Collapse
|
14
|
Hah N, Kolkman A, Ruhl DD, Pijnappel WWMP, Heck AJR, Timmers HTM, Kraus WL. A role for BAF57 in cell cycle-dependent transcriptional regulation by the SWI/SNF chromatin remodeling complex. Cancer Res 2010; 70:4402-11. [PMID: 20460533 DOI: 10.1158/0008-5472.can-09-2767] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The SWI/SNF complex is an ATP-dependent chromatin remodeling complex that plays pivotal roles in gene regulation and cell cycle control. In the present study, we explored the molecular functions of the BAF57 subunit of SWI/SNF in cell cycle control via transcriptional regulation of cell cycle-related genes. We affinity purified SWI/SNF from HeLa cells stably expressing FLAG-tagged BAF47/Ini1 with or without stable short hairpin RNA-mediated knockdown of BAF57. The subunit composition of the holo-SWI/SNF and BAF57-depleted SWI/SNF complexes from these cells was determined using a quantitative SILAC (stable isotope labeling by amino acids in cell culture)-based proteomic approach. Depletion of BAF57 resulted in a significant codepletion of BAF180 from the SWI/SNF complex without decreasing total cellular BAF180 levels. In biochemical assays of SWI/SNF activity, the holo-SWI/SNF and BAF57/BAF180-depleted SWI/SNF complexes exhibited similar activities. However, in cell proliferation assays using HeLa cells, knockdown of BAF57 resulted in an accumulation of cells in the G(2)-M phase, inhibition of colony formation, and impaired growth in soft agar. Knockdown of BAF57 also caused transcriptional misregulation of various cell cycle-related genes, especially genes involved in late G(2). Collectively, our results have identified a new role for BAF57 within the SWI/SNF complex that is required for (a) maintaining the proper subunit composition of the complex and (b) cell cycle progression through the transcriptional regulation of a subset of cell cycle-related genes.
Collapse
Affiliation(s)
- Nasun Hah
- Department of Molecular Biology and Genetics and Graduate Field of Biochemistry, Molecular and Cell Biology, Cornell University, Ithaca, NY 14853, USA
| | | | | | | | | | | | | |
Collapse
|
15
|
Pijnappel WP, Kolkman A, Baltissen MP, Heck AJ, Timmers HM. Quantitative mass spectrometry of TATA binding protein-containing complexes and subunit phosphorylations during the cell cycle. Proteome Sci 2009; 7:46. [PMID: 20034391 PMCID: PMC2804597 DOI: 10.1186/1477-5956-7-46] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2009] [Accepted: 12/24/2009] [Indexed: 12/26/2022] Open
Abstract
BACKGROUND Progression through the cell cycle is accompanied by tightly controlled regulation of transcription. On one hand, a subset of genes is expressed in a cell cycle-dependent manner. On the other hand, a general inhibition of transcription occurs during mitosis. Genetic and genome-wide studies suggest cell cycle regulation at the level of transcription initiation by protein complexes containing the common DNA-binding subunit TATA binding protein (TBP). TBP is a key player in regulating transcription by all three nuclear RNA polymerases. It forms at least four distinct protein complexes with TBP-associated factors (TAFs): SL1, B-TFIID, TFIID, and TFIIIB. Some TAFs are known to remain associated with TBP during the cell cycle. Here we analyze all TAFs and their phosphorylation status during the cell cycle using a quantitative mass spectrometry approach. RESULTS TBP protein complexes present in human cells at the G2/M and G1/S transitions were analyzed by combining affinity purification with quantitative mass spectrometry using stable isotope labeling with amino acids in cell culture (SILAC). Phosphorylations were mapped and quantified after enrichment of tryptic peptides by titanium dioxide. This revealed that subunit stoichiometries of TBP complexes remained intact, but their relative abundances in nuclear extracts changed during the cell cycle. Several novel phosphorylations were detected on subunits of the TBP complexes TFIID and SL1. G2/M-specific phosphorylations were detected on TAF1, TAF4, TAF7, and TAFI41/TAF1D, and G1/S-specific dephosphorylations were detected on TAF3. Many phosphorylated residues were evolutionary conserved from human to zebrafish and/or drosophila, and were present in conserved regions suggesting important regulatory functions. CONCLUSIONS This study provides the first quantitative proteomic analysis of human TBP containing protein complexes at the G2/M and G1/S transitions, and identifies new cell cycle-dependent phosphorylations on TAFs present in their protein complex. We speculate that phosphorylation of complex-specific subunits may be involved in regulating the activities of TBP protein complexes during the cell cycle.
Collapse
Affiliation(s)
- Wwm Pim Pijnappel
- Netherlands Proteomics Centre, Department of Physiological Chemistry, University Medical Center Utrecht, Universiteitsweg 100, 3584 CG Utrecht, the Netherlands
| | - Annemieke Kolkman
- Netherlands Proteomics Centre, Biomolecular Mass Spectrometry and Proteomics Group, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Faculty of Science, Padualaan 8, 3584 CH Utrecht, the Netherlands
| | - Marijke Pa Baltissen
- Netherlands Proteomics Centre, Department of Physiological Chemistry, University Medical Center Utrecht, Universiteitsweg 100, 3584 CG Utrecht, the Netherlands
| | - Albert Jr Heck
- Netherlands Proteomics Centre, Biomolecular Mass Spectrometry and Proteomics Group, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Faculty of Science, Padualaan 8, 3584 CH Utrecht, the Netherlands
| | - Ht Marc Timmers
- Netherlands Proteomics Centre, Department of Physiological Chemistry, University Medical Center Utrecht, Universiteitsweg 100, 3584 CG Utrecht, the Netherlands
| |
Collapse
|
16
|
Mousson F, Kolkman A, Pijnappel WWMP, Timmers HTM, Heck AJR. Quantitative proteomics reveals regulation of dynamic components within TATA-binding protein (TBP) transcription complexes. Mol Cell Proteomics 2007; 7:845-52. [PMID: 18087068 DOI: 10.1074/mcp.m700306-mcp200] [Citation(s) in RCA: 66] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Affinity purification in combination with isotope labeling of proteins has proven to be a powerful method to discriminate specific from nonspecific interactors. However, in the standard SILAC (stable isotope labeling by amino acids in cell culture) approach dynamic components may easily be assigned as nonspecific. We compared two affinity purification protocols, which in combination revealed information on the dynamics of protein complexes. We focused on the central component in eukaryotic transcription, the human TATA-binding protein, which is involved in different complexes. All known TATA-binding protein-associated factors (TAFs) were detected as specific interactors. Interestingly one of them, BTAF1, exchanged significantly in cell extracts during the affinity purification. The other TAFs did not display this behavior. Cell cycle synchronization showed that BTAF1 exchange was regulated during mitosis. The combination of the two affinity purification protocols allows a quantitative approach to identify transient components in any protein complex.
Collapse
Affiliation(s)
- Florence Mousson
- Department of Physiological Chemistry, University Medical Centre Utrecht, Universiteitsweg 100, 3584CG Utrecht, The Netherlands
| | | | | | | | | |
Collapse
|
17
|
Kolkman A, Daran-Lapujade P, Fullaondo A, Olsthoorn MMA, Pronk JT, Slijper M, Heck AJR. Proteome analysis of yeast response to various nutrient limitations. Mol Syst Biol 2006; 2:2006.0026. [PMID: 16738570 PMCID: PMC1681501 DOI: 10.1038/msb4100069] [Citation(s) in RCA: 105] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2005] [Accepted: 04/05/2006] [Indexed: 12/04/2022] Open
Abstract
We compared the response of Saccharomyces cerevisiae to carbon (glucose) and nitrogen (ammonia) limitation in chemostat cultivation at the proteome level. Protein levels were differentially quantified using unlabeled and 15N metabolically labeled yeast cultures. A total of 928 proteins covering a wide range of isoelectric points, molecular weights and subcellular localizations were identified. Stringent statistical analysis identified 51 proteins upregulated in response to glucose limitation and 51 upregulated in response to ammonia limitation. Under glucose limitation, typical glucose-repressed genes encoding proteins involved in alternative carbon source utilization, fatty acids β-oxidation and oxidative phosphorylation displayed an increased protein level. Proteins upregulated in response to nitrogen limitation were mostly involved in scavenging of alternative nitrogen sources and protein degradation. Comparison of transcript and protein levels clearly showed that upregulation in response to glucose limitation was mainly transcriptionally controlled, whereas upregulation in response to nitrogen limitation was essentially controlled at the post-transcriptional level by increased translational efficiency and/or decreased protein degradation. These observations underline the need for multilevel analysis in yeast systems biology.
Collapse
Affiliation(s)
- Annemieke Kolkman
- Department of Biomolecular Mass Spectrometry, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands
| | - Pascale Daran-Lapujade
- Kluyver Laboratory of Biotechnology, Delft University of Technology, Delft, The Netherlands
| | - Asier Fullaondo
- Department of Genetics, Physical Anthropology and Animal Physiology, Faculty of Medicine and Dentistry, UPV-EHU, Leioa (Bizkaia) Spain
| | | | - Jack T Pronk
- Kluyver Laboratory of Biotechnology, Delft University of Technology, Delft, The Netherlands
| | - Monique Slijper
- Department of Biomolecular Mass Spectrometry, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands
| | - Albert J R Heck
- Department of Biomolecular Mass Spectrometry, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands
- Department of Biomolecular Mass Spectrometry, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Sorbonnelaan 16, CA 3584 Utrecht, The Netherlands. Tel.: +31 30 253 6797; Fax +31 30 251 8219; E-mail:
| |
Collapse
|
18
|
Kolkman A, Slijper M, Heck AJR. Development and application of proteomics technologies in Saccharomyces cerevisiae. Trends Biotechnol 2005; 23:598-604. [PMID: 16202464 DOI: 10.1016/j.tibtech.2005.09.004] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2005] [Revised: 07/18/2005] [Accepted: 09/19/2005] [Indexed: 11/21/2022]
Abstract
Proteomics research focuses on the identification and quantification of "all" proteins present in cells, organisms or tissue. Proteomics is technically complicated because it encompasses the characterization and functional analysis of all proteins that are expressed by a genome. Moreover, because the expression levels of proteins strongly depend on complex regulatory systems, the proteome is highly dynamic. This review focuses on the two major proteomics methodologies, one based on 2D gel electrophoresis and the other based on liquid chromatography coupled to mass spectrometry. The recent developments of these methodologies and their application to quantitative proteomics are described. The model system Saccharomyces cerevisiae is considered to be the optimal vehicle for proteomics and we review studies investigating yeast adaptation to changes in (nutritional) environment.
Collapse
Affiliation(s)
- Annemieke Kolkman
- Department of Biomolecular Mass Spectrometry, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Sorbonnelaan 16, 3584 CA Utrecht, The Netherlands.
| | | | | |
Collapse
|
19
|
Spelbrink REJ, Kolkman A, Slijper M, Killian JA, de Kruijff B. Detection and Identification of Stable Oligomeric Protein Complexes in Escherichi coli Inner Membranes. J Biol Chem 2005; 280:28742-8. [PMID: 15919657 DOI: 10.1074/jbc.m501617200] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
In this study we present a new technology to detect stable oligomeric protein complexes in membranes. The technology is based on the ability of small membrane-active alcohols to dissociate the highly stable homotetrameric potassium channel KcsA. It is shown via a proteomics approach, using diagonal electrophoresis and nano-flow liquid chromatography coupled to tandem mass spectrometry, that a large number of both integral and peripheral Escherichia coli inner membrane proteins are part of stable oligomeric complexes that can be dissociated by small alcohols. This study gives insight into the composition and stability of these complexes.
Collapse
Affiliation(s)
- Robin E J Spelbrink
- Department Biochemistry of Membranes, Institute of Biomembranes and Bijvoet Center for Biomolecular Research, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.
| | | | | | | | | |
Collapse
|
20
|
Abstract
Quantitative protein expression profiling is a crucial part of proteomics and requires methods that are able to efficiently provide accurate and reproducible differential expression values for proteins in two or more biological samples. In this report we evaluate in a direct comparative assessment two state-of-the-art quantitative proteomic approaches, namely difference in gel electrophoresis (DiGE) and metabolic stable isotope labeling. Therefore, Saccharomyces cerevisiae was grown under well defined experimental conditions in chemostats under two single nutrient-limited growth conditions using (14)N- or (15)N-labeled ammonium sulfate as the single nitrogen source. Following lysis and protein extraction from the two yeast samples, the proteins were fluorescently labeled using different fluorescent CyDyes. Subsequently, the yeast samples were mixed, and the proteins were separated by two-dimensional gel electrophoresis. Following in-gel digestion, the resulting peptides were analyzed by mass spectrometry using a MALDI-TOF mass spectrometer. Relative ratios in protein expression between these two yeast samples were determined using both DiGE and metabolic stable isotope labeling. Focusing on a small, albeit representative, set of proteins covering the whole gel range, including some protein isoforms and ranging from low to high abundance, we observe that the correlation between these two methods of quantification is good with the differential ratios determined following the equation R(Met.Lab.) = 0.98R(DiGE) with r(2) = 0.89. Although the correlation between DiGE and metabolic stable isotope labeling is exceptionally good, we do observe and discuss (dis)advantages of both methods as well as in relation to other (quantitative) approaches.
Collapse
Affiliation(s)
- Annemieke Kolkman
- Department of Biomolecular Mass Spectrometry, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Sorbonnelaan 16, 3584 CA Utrecht, The Netherlands
| | | | | | | |
Collapse
|
21
|
Kolkman A, Olsthoorn MMA, Heeremans CEM, Heck AJR, Slijper M. Comparative Proteome Analysis of Saccharomyces cerevisiae Grown in Chemostat Cultures Limited for Glucose or Ethanol. Mol Cell Proteomics 2005; 4:1-11. [PMID: 15502163 DOI: 10.1074/mcp.m400087-mcp200] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
The use of chemostat culturing enables investigation of steady-state physiological characteristics and adaptations to nutrient-limited growth, while all other relevant growth conditions are kept constant. We examined and compared the proteomic response of wild-type Saccharomyces cerevisiae CEN.PK113-7D to growth in aerobic chemostat cultures limited for carbon sources being either glucose or ethanol. To obtain a global overview of changes in the proteome, we performed triplicate analyses using two-dimensional gel electrophoresis and identified proteins of interest using MS. Relative quantities of about 400 proteins were obtained and analyzed statistically to determine which protein steady-state expression levels changed significantly under glucose- or ethanol-limited conditions. Interestingly, only enzymes involved in central carbon metabolism showed a significant change in steady-state expression, whereas expression was only detected in one of both carbon source-limiting conditions for 15 of these enzymes. Side effects that were previously reported for batch cultivation conditions, such as responses to continuous variation of specific growth rate, to carbon-catabolite repression, and to accumulation of toxic substrates, were not observed. Moreover, by comparing our proteome data with corresponding mRNA data, we were able to unravel which processes in the central carbon metabolism were regulated at the level of the proteome, and which processes at the level of transcriptome. Importantly, we show here that the combined approach of chemostat cultivation and comprehensive proteome analysis allowed us to study the primary effect of single limiting conditions on the yeast proteome.
Collapse
Affiliation(s)
- Annemieke Kolkman
- Department of Biomolecular Mass Spectrometry, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, 3584 CA Utrecht, The Netherlands
| | | | | | | | | |
Collapse
|