1
|
Liang W, Nunes R, Leong JV, Carvalho APS, Müller CJ, Braby MF, Pequin O, Hoshizaki S, Morinaka S, Peggie D, Badon JAT, Mohagan AB, Beaver E, Hsu YF, Inayoshi Y, Monastyrskii A, Vlasanek P, Toussaint EFA, Benítez HA, Kawahara AY, Pierce NE, Lohman DJ. To and fro in the archipelago: Repeated inter-island dispersal and New Guinea's orogeny affect diversification of Delias, the world's largest butterfly genus. Mol Phylogenet Evol 2024; 194:108022. [PMID: 38325534 DOI: 10.1016/j.ympev.2024.108022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2023] [Revised: 01/20/2024] [Accepted: 01/28/2024] [Indexed: 02/09/2024]
Abstract
The world's largest butterfly genus Delias, commonly known as Jezebels, comprises ca. 251 species found throughout Asia, Australia, and Melanesia. Most species are endemic to islands in the Indo-Australian Archipelago or to New Guinea and nearby islands in Melanesia, and many species are restricted to montane habitats over 1200 m. We inferred an extensively sampled and well-supported molecular phylogeny of the group to better understand the spatial and temporal dimensions of its diversification. The remarkable diversity of Delias evolved in just ca. 15-16 Myr (crown age). The most recent common ancestor of a clade with most of the species dispersed out of New Guinea ca. 14 Mya, but at least six subsequently diverging lineages dispersed back to the island. Diversification was associated with frequent dispersal of lineages among the islands of the Indo-Australian Archipelago, and the divergence of sister taxa on a single landmass was rare and occurred only on the largest islands, most notably on New Guinea. We conclude that frequent inter-island dispersal during the Neogene-likely facilitated by frequent sea level change-sparked much diversification during that period. Many extant New Guinea lineages started diversifying 5 Mya, suggesting that orogeny facilitated their diversification. Our results largely agree with the most recently proposed species group classification system, and we use our large taxon sample to extend this system to all described species. Finally, we summarize recent insights to speculate how wing pattern evolution, mimicry, and sexual selection might also contribute to these butterflies' rapid speciation and diversification.
Collapse
Affiliation(s)
- Weijun Liang
- Department of Biology, City College of New York, City University of New York, USA
| | - Renato Nunes
- Department of Biology, City College of New York, City University of New York, USA; PhD Program in Biology, Graduate Center, City University of New York, New York, NY, USA
| | - Jing V Leong
- Department of Biology, City College of New York, City University of New York, USA; Biology Centre of the Czech Academy of Sciences, Branisovska 31, Ceske Budejovice, Czech Republic; Faculty of Science, Department of Zoology, University of South Bohemia, Ceske Budejovice, Czech Republic
| | - Ana Paula S Carvalho
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | | | - Michael F Braby
- Division of Ecology and Evolution, Research School of Biology, The Australian National University, Acton, ACT, Australia; Australian National Insect Collection, Canberra, ACT, Australia
| | | | - Sugihiko Hoshizaki
- Department of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi, Bunkyo-ku, Tokyo, Japan
| | | | - Djunijanti Peggie
- Museum Zoologicum Bogoriense, Research Center for Biosystematics and Evolution, National Research and Innovation Agency, Cibinong-Bogor, Indonesia
| | - Jade Aster T Badon
- Animal Biology Division, Institute of Biological Sciences, University of the Philippines Los Baños, Laguna, Philippines
| | - Alma B Mohagan
- Department of Biology, College of Arts and Sciences, and Center for Biodiversity Research & Extension in Mindanao, Central Mindanao University, Musuan, Maramag, Bukidnon, Philippines
| | - Ethan Beaver
- Division of Ecology and Evolution, Research School of Biology, The Australian National University, Acton, ACT, Australia; Australian National Insect Collection, Canberra, ACT, Australia
| | - Yu-Feng Hsu
- College of Life Science, National Taiwan Normal University, Taipei, Taiwan
| | - Yutaka Inayoshi
- Sritana Condominium 2, 96/173, Huay Kaeo Rd. T. Suthep, A. Muang, Chiang Mai, Thailand
| | - Alexander Monastyrskii
- Vietnam National Museum of Nature, Vietnam Academy of Science and Technology, Cau Giay, Hanoi, Viet Nam
| | - Petr Vlasanek
- T.G. Masaryk Water Research Institute, Prague, Czech Republic
| | | | - Hugo A Benítez
- Laboratorio de Ecología y Morfometría Evolutiva, Centro de Investigación de Estudios Avanzados del Maule, Universidad Católica del Maule, Talca, Chile
| | - Akito Y Kawahara
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA; Entomology & Nematology Department and Department of Biology, University of Florida, Gainesville, FL, USA
| | - Naomi E Pierce
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - David J Lohman
- Department of Biology, City College of New York, City University of New York, USA; PhD Program in Biology, Graduate Center, City University of New York, New York, NY, USA; Entomology Section, National Museum of Natural History, Manila, Philippines.
| |
Collapse
|
2
|
Carvalho APS, Owens HL, St Laurent RA, Earl C, Dexter KM, Messcher RL, Willmott KR, Aduse-Poku K, Collins SC, Homziak NT, Hoshizaki S, Hsu YF, Kizhakke AG, Kunte K, Martins DJ, Mega NO, Morinaka S, Peggie D, Romanowski HP, Sáfián S, Vila R, Wang H, Braby MF, Espeland M, Breinholt JW, Pierce NE, Kawahara AY, Lohman DJ. Comprehensive phylogeny of Pieridae butterflies reveals strong correlation between diversification and temperature. iScience 2024; 27:109336. [PMID: 38500827 PMCID: PMC10945170 DOI: 10.1016/j.isci.2024.109336] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 10/28/2023] [Accepted: 02/21/2024] [Indexed: 03/20/2024] Open
Abstract
Temperature is thought to be a key factor influencing global species richness patterns. We investigate the link between temperature and diversification in the butterfly family Pieridae by combining next generation DNA sequences and published molecular data with fine-grained distribution data. We sampled nearly 600 pierid butterfly species to infer the most comprehensive molecular phylogeny of the family and curated a distribution dataset of more than 800,000 occurrences. We found strong evidence that species in environments with more stable daily temperatures or cooler maximum temperatures in the warm seasons have higher speciation rates. Furthermore, speciation and extinction rates decreased in tandem with global temperatures through geological time, resulting in a constant net diversification.
Collapse
Affiliation(s)
- Ana Paula S. Carvalho
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, Gainesville, FL, USA
| | - Hannah L. Owens
- Center for Global Mountain Biodiversity, Globe Institute, University of Copenhagen, Copenhagen, Denmark
- Center for Macroecology, Evolution, and Climate, Globe Institute, University of Copenhagen, Copenhagen, Denmark
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Ryan A. St Laurent
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, Gainesville, FL, USA
- Department of Entomology, Smithsonian Institution, National Museum of Natural History, Washington, DC, USA
| | - Chandra Earl
- Department of Natural Sciences, Bernice Pauahi Bishop Museum, Honolulu, HI, USA
| | - Kelly M. Dexter
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, Gainesville, FL, USA
| | - Rebeccah L. Messcher
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, Gainesville, FL, USA
| | - Keith R. Willmott
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, Gainesville, FL, USA
| | | | | | - Nicholas T. Homziak
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, Gainesville, FL, USA
- Department of Entomology and Nematology, University of Florida, Gainesville, FL, USA
| | - Sugihiko Hoshizaki
- Department of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
| | - Yu-Feng Hsu
- Department of Life Science, National Taiwan Normal University, Taipei, Taiwan, R.O.C
| | - Athulya G. Kizhakke
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, GKVK Campus, Bengaluru, India
| | - Krushnamegh Kunte
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, GKVK Campus, Bengaluru, India
| | - Dino J. Martins
- Turkana Basin Institute, Stony Brook University, Stony Brook, NY, USA
- Insect Committee of Nature Kenya, The East Africa Natural History Society, Nairobi, Kenya
| | - Nicolás O. Mega
- Programa de Pós-Graduação em Biologia Animal, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil
| | - Sadaharu Morinaka
- Saitama Study Center, The Open University of Japan, Omiya-ku, Saitama City, Japan
| | - Djunijanti Peggie
- Museum Zoologi Bogor, Research Center for Biosystematics and Evolution, Research Organization for Life Sciences and Environment, National Research and Innovation Agency, Cibinong, Bogor, Indonesia
| | - Helena P. Romanowski
- Laboratório de Ecologia de Insetos, Departamento de Zoologia, Instituto de Biociências, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil
| | - Szabolcs Sáfián
- African Butterfly Research Institute, Karen, Nairobi, Kenya
- Institute of Silviculture and Forest Protection, University of Sopron, Sopron, Hungary
| | - Roger Vila
- Institut de Biologia Evolutiva (CSIC-Univ. Pompeu Fabra), Barcelona, Spain
| | - Houshuai Wang
- Department of Entomology, College of Plant Protection, South China Agricultural University, Guangzhou, China
| | - Michael F. Braby
- Division of Ecology and Evolution, Research School of Biology, The Australian National University, Acton, ACT, Australia
- Australian National Insect Collection, National Research Collections Australia, Canberra, ACT, Australia
| | - Marianne Espeland
- Leibniz Institute for the Analysis of Biodiversity Change, Museum Koenig, Bonn, Germany
| | - Jesse W. Breinholt
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, Gainesville, FL, USA
- Intermountain Healthcare, Intermountain Precision Genomics, St. George, UT, USA
| | - Naomi E. Pierce
- Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - Akito Y. Kawahara
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, Gainesville, FL, USA
- Department of Entomology and Nematology, University of Florida, Gainesville, FL, USA
- Department of Biology, University of Florida, Gainesville, FL, USA
| | - David J. Lohman
- Department of Biology, City University of New York, New York, NY, USA
- PhD Program in Biology, Graduate Center, City University of New York, New York, NY, USA
- Entomology Section, National Museum of Natural History, Manila, Philippines
| |
Collapse
|
3
|
Chimeno C, Schmidt S, Hamid H, Narakusumo RP, Peggie D, Balke M, Cancian de Araujo B. DNA barcoding data release for the Phoridae (Insecta, Diptera) of the Halimun-Salak National Park (Java, Indonesia). Biodivers Data J 2023; 11:e104942. [PMID: 37448693 PMCID: PMC10336553 DOI: 10.3897/bdj.11.e104942] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Accepted: 06/02/2023] [Indexed: 07/15/2023] Open
Abstract
Launched in 2015, the large-scale initiative Indonesian Biodiversity Discovery and Information System (IndoBioSys) is a multidisciplinary German-Indonesian collaboration with the main goal of establishing a standardised framework for species discovery and all associated steps. One aspect of the project includes the application of DNA barcoding for species identification and biodiversity assessments. In this framework, we conducted a large-scale assessment of the insect fauna of the Mount Halimun-Salak National Park which is one of the largest tropical rain-forest ecosystems left in West Java. In this study, we present the results of processing 5,034 specimens of Phoridae (scuttle flies) via DNA barcoding. Despite limited sequencing success, we obtained more than 500 clusters using different algorithms (RESL, ASAP, SpeciesIdentifier). Moreover, Chao statistics indicated that we drastically undersampled all trap sites, implying that the true diversity of Phoridae is, in fact, much higher. With this data release, we hope to shed some light on the hidden diversity of this megadiverse group of flies.
Collapse
Affiliation(s)
- Caroline Chimeno
- SNSB-Zoologische Staatssammlung München, München, GermanySNSB-Zoologische Staatssammlung MünchenMünchenGermany
| | - Stefan Schmidt
- SNSB-Zoologische Staatssammlung München, München, GermanySNSB-Zoologische Staatssammlung MünchenMünchenGermany
| | - Hasmiandy Hamid
- Department of Plant Protection, Faculty of Agriculture, Universitas Andalas, Padang, IndonesiaDepartment of Plant Protection, Faculty of Agriculture, Universitas AndalasPadangIndonesia
| | - Raden Pramesa Narakusumo
- Museum Zoologicum Bogoriense, Research Center for Biosystematics and Evolution, National Research and Innovation Agency (BRIN), Cibinong, IndonesiaMuseum Zoologicum Bogoriense, Research Center for Biosystematics and Evolution, National Research and Innovation Agency (BRIN)CibinongIndonesia
| | - Djunijanti Peggie
- Museum Zoologicum Bogoriense, Research Center for Biosystematics and Evolution, National Research and Innovation Agency (BRIN), Cibinong, IndonesiaMuseum Zoologicum Bogoriense, Research Center for Biosystematics and Evolution, National Research and Innovation Agency (BRIN)CibinongIndonesia
| | - Michael Balke
- SNSB-Zoologische Staatssammlung München, München, GermanySNSB-Zoologische Staatssammlung MünchenMünchenGermany
| | - Bruno Cancian de Araujo
- SNSB-Zoologische Staatssammlung München, München, GermanySNSB-Zoologische Staatssammlung MünchenMünchenGermany
- LaBI-UFES, Laboratório de Biodiversidade de Insetos, Universidade Federal do Espírito Santo, Vitória, BrazilLaBI-UFES, Laboratório de Biodiversidade de Insetos, Universidade Federal do Espírito SantoVitóriaBrazil
| |
Collapse
|
4
|
Watung JF, Darmawan D, Suwito A, Narakusumo RP, Nugroho H, Encilia E, Qodri A, Peggie D, Ubaidillah R, Sutrisno H. The genus Agrioglypta Meyrick (Lepidoptera: Crambidae, Spilomelinae) from Indonesia with descriptions of three new species. Zootaxa 2023; 5297:569-578. [PMID: 37518778 DOI: 10.11646/zootaxa.5297.4.6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Indexed: 08/01/2023]
Abstract
Inventory studies on the genus Agrioglypta Meyrick, 1932 have been conducted in Java, Sulawesi, and Papua during 2007-2011. This study also aims to explore the diversity of Agrioglypta in Indonesia, and the possible apomorphic characteristics, especially genitalic characters, that support the monophyly of the genus. Three new species were discovered, A. hastantiae sp. nov., A. ubaidillahi sp. nov., and A. halimunensis sp. nov., for a total of nine species of the genus recorded in Indonesia. Images of adults and genitalia are provided for all new species.
Collapse
Affiliation(s)
- Jackson F Watung
- Faculty of Agriculture; Sam Ratulangi University; Manado; 95115; Indonesia.
| | - Darmawan Darmawan
- Museum Zoologicum Bogoriense; Research Center for Biosystematics and Evolution; National Research and Innovation Agency. Jl. Raya Jakarta-Bogor Km 46; Cibinong 16911; Indonesia.
| | - Awit Suwito
- Museum Zoologicum Bogoriense; Research Center for Biosystematics and Evolution; National Research and Innovation Agency. Jl. Raya Jakarta-Bogor Km 46; Cibinong 16911; Indonesia.
| | - Raden Pramesa Narakusumo
- Museum Zoologicum Bogoriense; Research Center for Biosystematics and Evolution; National Research and Innovation Agency. Jl. Raya Jakarta-Bogor Km 46; Cibinong 16911; Indonesia.
| | - Hari Nugroho
- Museum Zoologicum Bogoriense; Research Center for Biosystematics and Evolution; National Research and Innovation Agency. Jl. Raya Jakarta-Bogor Km 46; Cibinong 16911; Indonesia.
| | - Encilia Encilia
- Museum Zoologicum Bogoriense; Research Center for Biosystematics and Evolution; National Research and Innovation Agency. Jl. Raya Jakarta-Bogor Km 46; Cibinong 16911; Indonesia.
| | - Agmal Qodri
- Museum Zoologicum Bogoriense; Research Center for Biosystematics and Evolution; National Research and Innovation Agency. Jl. Raya Jakarta-Bogor Km 46; Cibinong 16911; Indonesia.
| | - Djunijanti Peggie
- Museum Zoologicum Bogoriense; Research Center for Biosystematics and Evolution; National Research and Innovation Agency. Jl. Raya Jakarta-Bogor Km 46; Cibinong 16911; Indonesia.
| | - Rosichon Ubaidillah
- Museum Zoologicum Bogoriense; Research Center for Biosystematics and Evolution; National Research and Innovation Agency. Jl. Raya Jakarta-Bogor Km 46; Cibinong 16911; Indonesia.
| | - Hari Sutrisno
- Museum Zoologicum Bogoriense; Research Center for Biosystematics and Evolution; National Research and Innovation Agency. Jl. Raya Jakarta-Bogor Km 46; Cibinong 16911; Indonesia.
| |
Collapse
|
5
|
Kawahara AY, Storer C, Carvalho APS, Plotkin DM, Condamine FL, Braga MP, Ellis EA, St Laurent RA, Li X, Barve V, Cai L, Earl C, Frandsen PB, Owens HL, Valencia-Montoya WA, Aduse-Poku K, Toussaint EFA, Dexter KM, Doleck T, Markee A, Messcher R, Nguyen YL, Badon JAT, Benítez HA, Braby MF, Buenavente PAC, Chan WP, Collins SC, Rabideau Childers RA, Dankowicz E, Eastwood R, Fric ZF, Gott RJ, Hall JPW, Hallwachs W, Hardy NB, Sipe RLH, Heath A, Hinolan JD, Homziak NT, Hsu YF, Inayoshi Y, Itliong MGA, Janzen DH, Kitching IJ, Kunte K, Lamas G, Landis MJ, Larsen EA, Larsen TB, Leong JV, Lukhtanov V, Maier CA, Martinez JI, Martins DJ, Maruyama K, Maunsell SC, Mega NO, Monastyrskii A, Morais ABB, Müller CJ, Naive MAK, Nielsen G, Padrón PS, Peggie D, Romanowski HP, Sáfián S, Saito M, Schröder S, Shirey V, Soltis D, Soltis P, Sourakov A, Talavera G, Vila R, Vlasanek P, Wang H, Warren AD, Willmott KR, Yago M, Jetz W, Jarzyna MA, Breinholt JW, Espeland M, Ries L, Guralnick RP, Pierce NE, Lohman DJ. A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins. Nat Ecol Evol 2023; 7:903-913. [PMID: 37188966 PMCID: PMC10250192 DOI: 10.1038/s41559-023-02041-9] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2022] [Accepted: 03/16/2023] [Indexed: 05/17/2023]
Abstract
Butterflies are a diverse and charismatic insect group that are thought to have evolved with plants and dispersed throughout the world in response to key geological events. However, these hypotheses have not been extensively tested because a comprehensive phylogenetic framework and datasets for butterfly larval hosts and global distributions are lacking. We sequenced 391 genes from nearly 2,300 butterfly species, sampled from 90 countries and 28 specimen collections, to reconstruct a new phylogenomic tree of butterflies representing 92% of all genera. Our phylogeny has strong support for nearly all nodes and demonstrates that at least 36 butterfly tribes require reclassification. Divergence time analyses imply an origin ~100 million years ago for butterflies and indicate that all but one family were present before the K/Pg extinction event. We aggregated larval host datasets and global distribution records and found that butterflies are likely to have first fed on Fabaceae and originated in what is now the Americas. Soon after the Cretaceous Thermal Maximum, butterflies crossed Beringia and diversified in the Palaeotropics. Our results also reveal that most butterfly species are specialists that feed on only one larval host plant family. However, generalist butterflies that consume two or more plant families usually feed on closely related plants.
Collapse
Affiliation(s)
- Akito Y Kawahara
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA.
- Entomology and Nematology Department, University of Florida, Gainesville, FL, USA.
- Department of Biology, University of Florida, Gainesville, FL, USA.
| | - Caroline Storer
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Ana Paula S Carvalho
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - David M Plotkin
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Entomology and Nematology Department, University of Florida, Gainesville, FL, USA
| | - Fabien L Condamine
- CNRS, Institut des Sciences de l'Evolution de Montpellier (Université de Montpellier), Montpellier, France
| | - Mariana P Braga
- Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden
- Department of Biology, Washington University in St. Louis, St. Louis, MO, USA
| | - Emily A Ellis
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Ryan A St Laurent
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
| | - Xuankun Li
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Center for Biodiversity Research, Department of Biological Sciences, University of Memphis, Memphis, TN, USA
| | - Vijay Barve
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Liming Cai
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
- Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA, USA
| | - Chandra Earl
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Paul B Frandsen
- Department of Plant and Wildlife Sciences, Brigham Young University, Provo, UT, USA
| | - Hannah L Owens
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Center for Global Mountain Biodiversity, Globe Institute, University of Copenhagen, Copenhagen, Denmark
- Center for Macroecology, Evolution, and Climate, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark
| | - Wendy A Valencia-Montoya
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - Kwaku Aduse-Poku
- Biology Department, City College of New York, City University of New York, New York, NY, USA
- Department of Life and Earth Sciences, Perimeter College, Georgia State University, Decatur, GA, USA
| | - Emmanuel F A Toussaint
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Department of Entomology, Natural History Museum of Geneva, Geneva, Switzerland
| | - Kelly M Dexter
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Tenzing Doleck
- Biology Department, City College of New York, City University of New York, New York, NY, USA
- PhD Program in Biology, Graduate Center, City University of New York, New York, NY, USA
| | - Amanda Markee
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Rebeccah Messcher
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Y-Lan Nguyen
- Biology Department, City College of New York, City University of New York, New York, NY, USA
| | - Jade Aster T Badon
- Animal Biology Division, Institute of Biological Sciences, University of the Philippines Los Baños, Laguna, Philippines
| | - Hugo A Benítez
- Laboratorio de Ecología y Morfometría Evolutiva, Centro de Investigación de Estudios Avanzados del Maule, Universidad Católica del Maule, Talca, Chile
- Millennium Institute Biodiversity of Antarctic and Subantarctic Ecosystems (BASE), Santiago, Chile
| | - Michael F Braby
- Division of Ecology and Evolution, Research School of Biology, The Australian National University, Acton, Canberra, Australian Capital Territory, Australia
- Australian National Insect Collection, Canberra, Australian Capital Territory, Australia
| | | | - Wei-Ping Chan
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | | | - Richard A Rabideau Childers
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - Even Dankowicz
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - Rod Eastwood
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - Zdenek F Fric
- Biology Centre CAS, České Budějovice, Czech Republic
| | - Riley J Gott
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Entomology and Nematology Department, University of Florida, Gainesville, FL, USA
| | - Jason P W Hall
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
| | - Winnie Hallwachs
- Department of Biology, University of Pennsylvania, Philadelphia, PA, USA
| | - Nate B Hardy
- Department of Entomology and Plant Pathology, Auburn University, Auburn, AL, USA
| | - Rachel L Hawkins Sipe
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - Alan Heath
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
- Iziko South African Museum, Cape Town, South Africa
| | - Jomar D Hinolan
- Botany and National Herbarium Division, National Museum of the Philippines, Manila, Philippines
| | - Nicholas T Homziak
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Entomology and Nematology Department, University of Florida, Gainesville, FL, USA
| | - Yu-Feng Hsu
- College of Life Science, National Taiwan Normal University, Taipei, Taiwan
| | | | - Micael G A Itliong
- Biology Department, City College of New York, City University of New York, New York, NY, USA
| | - Daniel H Janzen
- Department of Biology, University of Pennsylvania, Philadelphia, PA, USA
| | | | - Krushnamegh Kunte
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru, India
| | - Gerardo Lamas
- Museo de Historia Natural, Universidad Nacional Mayor de San Marcos, Lima, Peru
| | - Michael J Landis
- Department of Biology, Washington University in St. Louis, St. Louis, MO, USA
| | - Elise A Larsen
- Department of Biology, Georgetown University, Washington, DC, USA
| | | | - Jing V Leong
- Biology Department, City College of New York, City University of New York, New York, NY, USA
- Biology Centre CAS, České Budějovice, Czech Republic
- Faculty of Science, Department of Zoology, University of South Bohemia, České Budějovice, Czech Republic
| | - Vladimir Lukhtanov
- Department of Karyosystematics, Zoological Institute of Russian Academy of Sciences, St. Petersburg, Russia
| | - Crystal A Maier
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - Jose I Martinez
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Entomology and Nematology Department, University of Florida, Gainesville, FL, USA
| | - Dino J Martins
- Turkana Basin Institute, Stony Brook University, Stony Brook, NY, USA
| | | | - Sarah C Maunsell
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - Nicolás Oliveira Mega
- Departamento de Zoologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
| | - Alexander Monastyrskii
- Vietnam Programme, Fauna & Flora International, Hanoi, Vietnam
- Vietnam National Museum of Nature, Vietnam Academy of Science and Technology, Hanoi, Vietnam
| | - Ana B B Morais
- Centro de Ciências Naturais e Exatas, Pós-Graduação em Biodiversidade Animal, Universidade Federal de Santa Maria, Santa Maria, Brazil
| | | | - Mark Arcebal K Naive
- Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, China
- University of Chinese Academy of Sciences, Beijing, China
- College of Arts and Sciences, Jose Rizal Memorial State University, Tampilisan, Philippines
| | | | - Pablo Sebastián Padrón
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Entomology Laboratory, Museo de Zoología, Universidad del Azuay, Cuenca, Ecuador
| | - Djunijanti Peggie
- Research Center for Biosystematics and Evolution, National Research and Innovation Agency (BRIN), Cibinong-Bogor, Indonesia
| | | | - Szabolcs Sáfián
- Institute of Silviculture and Forest Protection, University of West Hungary, Sopron, Hungary
| | - Motoki Saito
- The Research Institute of Evolutionary Biology (Insect Study Division), Setagaya, Japan
| | | | - Vaughn Shirey
- Department of Biology, Georgetown University, Washington, DC, USA
| | - Doug Soltis
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Pamela Soltis
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Andrei Sourakov
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Gerard Talavera
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
- Institut Botànic de Barcelona (IBB, CSIC-Ajuntament de Barcelona), Barcelona, Spain
| | - Roger Vila
- Institut de Biologia Evolutiva (CSIC-Univ. Pompeu Fabra), Barcelona, Spain
| | - Petr Vlasanek
- T.G. Masaryk Water Research Institute, Prague, Czech Republic
| | - Houshuai Wang
- Department of Entomology, College of Plant Protection, South China Agricultural University, Guangzhou, China
| | - Andrew D Warren
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Keith R Willmott
- McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Masaya Yago
- The University Museum, The University of Tokyo, Tokyo, Japan
| | - Walter Jetz
- Department of Ecology & Evolutionary Biology, Yale University, New Haven, CT, USA
- Center for Biodiversity and Global Change, Yale University, New Haven, CT, USA
| | - Marta A Jarzyna
- Department of Ecology & Evolutionary Biology, Yale University, New Haven, CT, USA
- Translational Data Analytics Institute, The Ohio State University, Columbus, OH, USA
- Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Columbus, OH, USA
| | - Jesse W Breinholt
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- RAPiD Genomics, Gainesville, FL, USA
| | - Marianne Espeland
- Leibniz Institute for the Analysis of Biodiversity Change, Zoological Research Museum Alexander Koenig, Bonn, Germany
| | - Leslie Ries
- Department of Biology, Georgetown University, Washington, DC, USA
| | - Robert P Guralnick
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
| | - Naomi E Pierce
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA.
| | - David J Lohman
- Biology Department, City College of New York, City University of New York, New York, NY, USA.
- PhD Program in Biology, Graduate Center, City University of New York, New York, NY, USA.
- Entomology Section, National Museum of Natural History, Manila, Philippines.
| |
Collapse
|
6
|
Gianvincenzo FD, Peggie D, Mackie M, Granzotto C, Higgitt C, Cappellini E. Palaeoproteomics guidelines to identify proteinaceous binders in artworks following the study of a 15th-century painting by Sandro Botticelli's workshop. Sci Rep 2022; 12:10638. [PMID: 35739140 PMCID: PMC9226190 DOI: 10.1038/s41598-022-14109-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2022] [Accepted: 06/01/2022] [Indexed: 11/09/2022] Open
Abstract
Undertaking the conservation of artworks informed by the results of molecular analyses has gained growing importance over the last decades, and today it can take advantage of state-of-the-art analytical techniques, such as mass spectrometry-based proteomics. Protein-based binders are among the most common organic materials used in artworks, having been used in their production for centuries. However, the applications of proteomics to these materials are still limited. In this work, a palaeoproteomic workflow was successfully tested on paint reconstructions, and subsequently applied to micro-samples from a 15th-century panel painting, attributed to the workshop of Sandro Botticelli. This method allowed the confident identification of the protein-based binders and their biological origin, as well as the discrimination of the binder used in the ground and paint layers of the painting. These results show that the approach is accurate, highly sensitive, and broadly applicable in the cultural heritage field, due to the limited amount of starting material required. Accordingly, a set of guidelines are suggested, covering the main steps of the data analysis and interpretation of protein sequencing results, optimised for artworks.
Collapse
Affiliation(s)
| | - D Peggie
- National Gallery Scientific Department, London, UK
| | - M Mackie
- Globe Institute, University of Copenhagen, Copenhagen, Denmark.,Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Copenhagen, Denmark
| | - C Granzotto
- Globe Institute, University of Copenhagen, Copenhagen, Denmark.,Department of Conservation and Science, Art Institute of Chicago, Chicago, IL, USA
| | - C Higgitt
- National Gallery Scientific Department, London, UK
| | - E Cappellini
- Globe Institute, University of Copenhagen, Copenhagen, Denmark.
| |
Collapse
|
7
|
Ruttenberg DM, VanKuren NW, Nallu S, Yen SH, Peggie D, Lohman DJ, Kronforst MR. The evolution and genetics of sexually dimorphic 'dual' mimicry in the butterfly Elymnias hypermnestra. Proc Biol Sci 2021; 288:20202192. [PMID: 33434461 DOI: 10.1098/rspb.2020.2192] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
Abstract
Sexual dimorphism is a major component of morphological variation across the tree of life, but the mechanisms underlying phenotypic differences between sexes of a single species are poorly understood. We examined the population genomics and biogeography of the common palmfly Elymnias hypermnestra, a dual mimic in which female wing colour patterns are either dark brown (melanic) or bright orange, mimicking toxic Euploea and Danaus species, respectively. As males always have a melanic wing colour pattern, this makes E. hypermnestra a fascinating model organism in which populations vary in sexual dimorphism. Population structure analysis revealed that there were three genetically distinct E. hypermnestra populations, which we further validated by creating a phylogenomic species tree and inferring historical barriers to gene flow. This species tree demonstrated that multiple lineages with orange females do not form a monophyletic group, and the same is true of clades with melanic females. We identified two single nucleotide polymorphisms (SNPs) near the colour patterning gene WntA that were significantly associated with the female colour pattern polymorphism, suggesting that this gene affects sexual dimorphism. Given WntA's role in colour patterning across Nymphalidae, E. hypermnestra females demonstrate the repeatability of the evolution of sexual dimorphism.
Collapse
Affiliation(s)
- Dee M Ruttenberg
- Department of Ecology and Evolution, The University of Chicago, Chicago, IL 60637, USA
| | - Nicholas W VanKuren
- Department of Ecology and Evolution, The University of Chicago, Chicago, IL 60637, USA
| | - Sumitha Nallu
- Department of Ecology and Evolution, The University of Chicago, Chicago, IL 60637, USA
| | - Shen-Horn Yen
- Department of Biological Sciences, National Sun Yat-Sen University, Kaohsiung 80424, Taiwan
| | - Djunijanti Peggie
- Museum Zoologicum Bogoriense, Research Center for Biology, Indonesian Institute of Sciences (LIPI), Cibinong-Bogor 16911, Indonesia
| | - David J Lohman
- Biology Department, City College of New York, City University of New York, New York, NY 10031, USA.,PhD Program in Biology, Graduate Center, City University of New York, New York, NY 10016, USA.,Entomology Section, National Museum of Natural History, Manila 1000, Philippines
| | - Marcus R Kronforst
- Department of Ecology and Evolution, The University of Chicago, Chicago, IL 60637, USA
| |
Collapse
|
8
|
Floren A, von Rintelen T, Hebert PDN, de Araujo BC, Schmidt S, Balke M, Narakusumo RP, Peggie D, Ubaidillah R, von Rintelen K, Müller T. Integrative ecological and molecular analysis indicate high diversity and strict elevational separation of canopy beetles in tropical mountain forests. Sci Rep 2020; 10:16677. [PMID: 33028881 PMCID: PMC7541450 DOI: 10.1038/s41598-020-73519-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2018] [Accepted: 09/16/2020] [Indexed: 11/18/2022] Open
Abstract
Tropical mountain forests contribute disproportionately to terrestrial biodiversity but little is known about insect diversity in the canopy and how it is distributed between tree species. We sampled tree-specific arthropod communities from 28 trees by canopy fogging and analysed beetle communities which were first morphotyped and then identified by their DNA barcodes. Our results show that communities from forests at 1100 and 1700 m a.s.l. are almost completely distinct. Diversity was much lower in the upper forest while community structure changed from many rare, less abundant species to communities with a pronounced dominance structure. We also found significantly higher beta-diversity between trees at the lower than higher elevation forest where community similarity was high. Comparisons on tree species found at both elevations reinforced these results. There was little species overlap between sites indicating limited elevational ranges. Furthermore, we exploited the advantage of DNA barcodes to patterns of haplotype diversity in some of the commoner species. Our results support the advantage of fogging and DNA barcodes for community studies and underline the need for comprehensive research aimed at the preservation of these last remaining pristine forests.
Collapse
Affiliation(s)
- Andreas Floren
- Department of Animal Ecology and Tropical Biology, Biocenter, University of Würzburg, Hans-Martin-Weg 5, 97074, Würzburg, Germany. .,Bavarian State Collection of Zoology, Münchhausenstr. 21, 81247, Munich, Germany. .,Department of Bioinformatics, Biocenter, University of Würzburg, Am Hubland, 97074, Würzburg, Germany.
| | - Thomas von Rintelen
- Museum für Naturkunde-Leibniz Institute for Evolution and Biodiversity Science, Invalidenstraße 43, 10115, Berlin, Germany
| | - Paul D N Hebert
- Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, N1G 2W1, Canada
| | | | - Stefan Schmidt
- Bavarian State Collection of Zoology, Münchhausenstr. 21, 81247, Munich, Germany
| | - Michael Balke
- Bavarian State Collection of Zoology, Münchhausenstr. 21, 81247, Munich, Germany
| | - Raden Pramesa Narakusumo
- Zoology Division (Museum Zoologicum Bogoriense), Research Center for Biology, Indonesian Institute of Sciences, Jl. Raya Jakarta-Bogor KM 46, Cibinong, Bogor, 16911, Indonesia.,Museum of Natural History Karlsruhe, Erbprinzenstr. 13, 76133, Karlsruhe, Germany
| | - Djunijanti Peggie
- Zoology Division (Museum Zoologicum Bogoriense), Research Center for Biology, Indonesian Institute of Sciences, Jl. Raya Jakarta-Bogor KM 46, Cibinong, Bogor, 16911, Indonesia
| | - Rosichon Ubaidillah
- Zoology Division (Museum Zoologicum Bogoriense), Research Center for Biology, Indonesian Institute of Sciences, Jl. Raya Jakarta-Bogor KM 46, Cibinong, Bogor, 16911, Indonesia
| | - Kristina von Rintelen
- Museum für Naturkunde-Leibniz Institute for Evolution and Biodiversity Science, Invalidenstraße 43, 10115, Berlin, Germany
| | - Tobias Müller
- Department of Bioinformatics, Biocenter, University of Würzburg, Am Hubland, 97074, Würzburg, Germany
| |
Collapse
|
9
|
Cancian de Araujo B, Schmidt S, Schmidt O, von Rintelen T, von Rintelen K, Floren A, Ubaidillah R, Peggie D, Balke M. DNA barcoding data release for Coleoptera from the Gunung Halimun canopy fogging workpackage of the Indonesian Biodiversity Information System (IndoBioSys) project. Biodivers Data J 2019:e31432. [PMID: 30686928 PMCID: PMC6342863 DOI: 10.3897/bdj.7.e31432] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2018] [Accepted: 12/19/2018] [Indexed: 11/13/2022] Open
Abstract
We present the results of a DNA barcoding pipeline that was established as part of the German-Indonesian IndobioSys project - Indonesian Biodiversity Information System. Our data release provides the first large-scale diversity assessment of Indonesian coleoptera obtained by canopy fogging. The project combined extensive fieldwork with databasing, DNA barcode based species delineation and the release of results in collaboration with Indonesian counterparts, aimed at supporting further analyses of the data. Canopy fogging on 28 trees was undertaken at two different sites, Cikaniki and Gunung Botol, in the south-eastern area of the Gunung Halimun-Salak National Park in West Java, Indonesia. In total, 7,447 specimens of Coleoptera were processed, of which 3,836 specimens produced DNA barcode sequences that were longer than 300 bp. A total of 3,750 specimens were assigned a Barcode Index Number (BIN), including 2,013 specimens from Cikaniki and 1,737 specimens from Gunung Botol. The 747 BINs, that were obtained, represented 39 families of Coleoptera. The distribution of specimens with BINs per tree was quite heterogeneous in both sites even in terms of the abundance of specimens or diversity of BINs. The specimen distribution per taxon was heterogeneous as well. Some 416 specimens could not be identified to family level, corresponding to 72 BINs that lack a family level identification. The data have shown a large heterogeneity in terms of abundance and distribution of BINs between sites, trees and families of Coleoptera. From the total of 747 BINs that were recovered, 421 (56%) are exclusive from a single tree. Although the two study sites were in close proximity and separated by a distance of only about five kilometres, the number of shared BINs between sites is low, with 81 of the 747 BINs. With this data release, we expect to shed some light on the largely hidden diversity in the canopy of tropical forests in Indonesia and elsewhere.
Collapse
Affiliation(s)
- Bruno Cancian de Araujo
- SNSB-Zoologische Staatssammlung München, Munich, Germany SNSB-Zoologische Staatssammlung München Munich Germany
| | - Stefan Schmidt
- SNSB-Zoologische Staatssammlung München, Munich, Germany SNSB-Zoologische Staatssammlung München Munich Germany
| | - Olga Schmidt
- SNSB-Zoologische Staatssammlung München, Munich, Germany SNSB-Zoologische Staatssammlung München Munich Germany
| | | | | | - Andreas Floren
- The Biocenter of the University of Würzburg, Würzburg, Germany The Biocenter of the University of Würzburg Würzburg Germany
| | - Rosichon Ubaidillah
- Museum Zoologicum Bogoriense, Research Center for Biology, Indonesian Institute of Sciences, Cibinong, Indonesia Museum Zoologicum Bogoriense, Research Center for Biology, Indonesian Institute of Sciences Cibinong Indonesia
| | - Djunijanti Peggie
- Museum Zoologicum Bogoriense, Research Center for Biology, Indonesian Institute of Sciences, Cibinong, Indonesia Museum Zoologicum Bogoriense, Research Center for Biology, Indonesian Institute of Sciences Cibinong Indonesia
| | - Michael Balke
- SNSB-Zoologische Staatssammlung München, Munich, Germany SNSB-Zoologische Staatssammlung München Munich Germany
| |
Collapse
|
10
|
Schmidt O, Hausmann A, Cancian de Araujo B, Sutrisno H, Peggie D, Schmidt S. A streamlined collecting and preparation protocol for DNA barcoding of Lepidoptera as part of large-scale rapid biodiversity assessment projects, exemplified by the Indonesian Biodiversity Discovery and Information System (IndoBioSys). Biodivers Data J 2017:e20006. [PMID: 29134041 PMCID: PMC5676197 DOI: 10.3897/bdj.5.e20006] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2017] [Accepted: 10/30/2017] [Indexed: 11/12/2022] Open
Abstract
Here we present a general collecting and preparation protocol for DNA barcoding of Lepidoptera as part of large-scale rapid biodiversity assessment projects, and a comparison with alternative preserving and vouchering methods. About 98% of the sequenced specimens processed using the present collecting and preparation protocol yielded sequences with more than 500 base pairs. The study is based on the first outcomes of the Indonesian Biodiversity Discovery and Information System (IndoBioSys). IndoBioSys is a German-Indonesian research project that is conducted by the Museum für Naturkunde in Berlin and the Zoologische Staatssammlung München, in close cooperation with the Research Center for Biology – Indonesian Institute of Sciences (RCB-LIPI, Bogor).
Collapse
Affiliation(s)
- Olga Schmidt
- SNSB - Zoologische Staatssammlung München, Munich, Germany
| | - Axel Hausmann
- SNSB - Zoologische Staatssammlung München, Munich, Germany
| | | | - Hari Sutrisno
- Division of Zoology, Research Center for Biology, Indonesian Institute of Sciences, Cibinong, Indonesia
| | - Djunijanti Peggie
- Division of Zoology, Research Center for Biology, Indonesian Institute of Sciences, Cibinong, Indonesia
| | - Stefan Schmidt
- SNSB - Zoologische Staatssammlung München, Munich, Germany
| |
Collapse
|
11
|
Wei CH, Lohman DJ, Peggie D, Yen SH. An illustrated checklist of the genus Elymnias Hübner, 1818 (Nymphalidae, Satyrinae). Zookeys 2017:47-152. [PMID: 28769686 PMCID: PMC5523206 DOI: 10.3897/zookeys.676.12579] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2017] [Accepted: 04/19/2017] [Indexed: 11/12/2022] Open
Abstract
We review the genus Elymnias Hübner, 1818, a morphologically diverse satyrine butterfly clade involved in multifarious Batesian mimicry relationships throughout Asia and Africa. A variety of different model species are mimicked, and many Elymnias species are sexually dimorphic mimics, with males and females resembling different model species. We revise species and subspecies delimitations in light of an integrative taxonomic investigation using external morphology, male and female genital morphology, and a multi-locus molecular phylogeny. There is little interspecific genitalic variation among species in this group, and previous taxonomists therefore relied almost entirely on wing patterns. Our molecular phylogenetic analysis reveals several examples of polymorphism or wing pattern divergence within a single species currently classified as two or more different species. We also found examples of wing pattern convergence among disparate lineages that mimic the same widespread model species. Frequently, two or more phenotypically similar species were classified as a single species. This comprehensive checklist reviews all names associated with Elymnias to align its taxonomy with the evolutionary history of the group. All available information on nomenclature, type localities, repositories of type specimens, and geographical distributions is summarized, and images of adult specimens and genitalia are provided along with distribution maps of all species and selected subspecies. We identify 2 species incertae sedis, establish 15 monophyletic species groups (including 1 species unplaced in any species group), and make 49 taxonomic changes, including 35 new synonyms, 7 new combinations (2 of which have new status), 1 resurrected combination, 1 resurrected subspecies, and 7 status changes.
Collapse
Affiliation(s)
- Chia-Hsuan Wei
- Department of Biological Sciences, National Sun Yat-Sen University, Kaohsiung, 80424, Taiwan
| | - David J Lohman
- Department of Biology, City College of New York, City University of New York, New York, NY, 10031, USA.,Ph.D. Program in Biology, Graduate Center, City University of New York, New York, NY, 10016, USA.,Entomology Section, National Museum of the Philippines, Manila, 1000, Philippines
| | - Djunijanti Peggie
- Division of Zoology, Research Centre for Biology-LIPI, Cibinong-Bogor, 16911, Indonesia
| | - Shen-Horn Yen
- Department of Biological Sciences, National Sun Yat-Sen University, Kaohsiung, 80424, Taiwan
| |
Collapse
|
12
|
Rusman R, Atmowidi T, Peggie D. Butterflies (Lepidoptera: Papilionoidea) of Mount Sago, West Sumatra: Diversity and Flower Preference. HAYATI Journal of Biosciences 2016. [DOI: 10.1016/j.hjb.2016.12.001] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
|
13
|
Lohman DJ, Peggie D, Pierce NE, Meier R. Phylogeography and genetic diversity of a widespread Old World butterfly, Lampides boeticus (Lepidoptera: Lycaenidae). BMC Evol Biol 2008; 8:301. [PMID: 18973689 PMCID: PMC2613918 DOI: 10.1186/1471-2148-8-301] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2008] [Accepted: 10/30/2008] [Indexed: 11/13/2022] Open
Abstract
BACKGROUND Evolutionary genetics provides a rich theoretical framework for empirical studies of phylogeography. Investigations of intraspecific genetic variation can uncover new putative species while allowing inference into the evolutionary origin and history of extant populations. With a distribution on four continents ranging throughout most of the Old World, Lampides boeticus (Lepidoptera: Lycaenidae) is one of the most widely distributed species of butterfly. It is placed in a monotypic genus with no commonly accepted subspecies. Here, we investigate the demographic history and taxonomic status of this widespread species, and screen for the presence or absence of the bacterial endosymbiont Wolbachia. RESULTS We performed phylogenetic, population genetic, and phylogeographic analyses using 1799 bp of mitochondrial sequence data from 57 specimens collected throughout the species' range. Most of the samples (>90%) were nearly genetically identical, with uncorrected pairwise sequence differences of 0-0.5% across geographic distances >9,000 km. However, five samples from central Thailand, Madagascar, northern Australia and the Moluccas formed two divergent clades differing from the majority of samples by uncorrected pairwise distances ranging from 1.79-2.21%. Phylogenetic analyses suggest that L. boeticus is almost certainly monophyletic, with all sampled genes coalescing well after the divergence from three closely related taxa included for outgroup comparisons. Analyses of molecular diversity indicate that most L. boeticus individuals in extant populations are descended from one or two relatively recent population bottlenecks. CONCLUSION The combined analyses suggest a scenario in which the most recent common ancestor of L. boeticus and its sister taxon lived in the African region approximately 7 Mya; extant lineages of L. boeticus began spreading throughout the Old World at least 1.5 Mya. More recently, expansion after population bottlenecks approximately 1.4 Mya seem to have displaced most of the ancestral polymorphism throughout its range, though at least two early-branching lineages still persist. One of these lineages, in northern Australia and the Moluccas, may have experienced accelerated differentiation due to infection with the bacterial endosymbiont Wolbachia, which affects reproduction. Examination of a haplotype network suggests that Australia has been colonized by the species several times. While there is little evidence for the existence of morphologically cryptic species, these results suggest a complex history affected by repeated dispersal events.
Collapse
Affiliation(s)
- David J Lohman
- Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore 117543, Republic of Singapore
| | - Djunijanti Peggie
- Division of Zoology, Research Centre for Biology-LIPI, Jl. Raya Jakarta-Bogor Km. 46, Cibinong-Bogor 16911, Indonesia
| | - Naomi E Pierce
- Museum of Comparative Zoology, Harvard University, 26 Oxford St., Cambridge, Massachusetts 02138, USA
| | - Rudolf Meier
- Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore 117543, Republic of Singapore
| |
Collapse
|
14
|
Sutcliffe OL, Thomas CD, Peggie D. Area-dependent migration by ringlet butterflies generates a mixture of patchy population and metapopulation attributes. Oecologia 1997; 109:229-234. [DOI: 10.1007/s004420050077] [Citation(s) in RCA: 68] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
|