1
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Graham S, Vu QD, Jahanifar M, Weigert M, Schmidt U, Zhang W, Zhang J, Yang S, Xiang J, Wang X, Rumberger JL, Baumann E, Hirsch P, Liu L, Hong C, Aviles-Rivero AI, Jain A, Ahn H, Hong Y, Azzuni H, Xu M, Yaqub M, Blache MC, Piégu B, Vernay B, Scherr T, Böhland M, Löffler K, Li J, Ying W, Wang C, Snead D, Raza SEA, Minhas F, Rajpoot NM. CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting. Med Image Anal 2024; 92:103047. [PMID: 38157647 DOI: 10.1016/j.media.2023.103047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Revised: 09/19/2023] [Accepted: 11/29/2023] [Indexed: 01/03/2024]
Abstract
Nuclear detection, segmentation and morphometric profiling are essential in helping us further understand the relationship between histology and patient outcome. To drive innovation in this area, we setup a community-wide challenge using the largest available dataset of its kind to assess nuclear segmentation and cellular composition. Our challenge, named CoNIC, stimulated the development of reproducible algorithms for cellular recognition with real-time result inspection on public leaderboards. We conducted an extensive post-challenge analysis based on the top-performing models using 1,658 whole-slide images of colon tissue. With around 700 million detected nuclei per model, associated features were used for dysplasia grading and survival analysis, where we demonstrated that the challenge's improvement over the previous state-of-the-art led to significant boosts in downstream performance. Our findings also suggest that eosinophils and neutrophils play an important role in the tumour microevironment. We release challenge models and WSI-level results to foster the development of further methods for biomarker discovery.
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Affiliation(s)
- Simon Graham
- Tissue Image Analytics Centre, University of Warwick, Coventry, United Kingdom; Histofy Ltd, Birmingham, United Kingdom.
| | - Quoc Dang Vu
- Tissue Image Analytics Centre, University of Warwick, Coventry, United Kingdom; Histofy Ltd, Birmingham, United Kingdom
| | - Mostafa Jahanifar
- Tissue Image Analytics Centre, University of Warwick, Coventry, United Kingdom
| | - Martin Weigert
- Institute of Bioengineering, School of Life Sciences, EPFL, Lausanne, Switzerland
| | | | - Wenhua Zhang
- The Department of Computer Science, The University of Hong Kong, Hong Kong
| | | | - Sen Yang
- College of Biomedical Engineering, Sichuan University, Chengdu, China
| | - Jinxi Xiang
- Department of Precision Instruments, Tsinghua University, Beijing, China
| | - Xiyue Wang
- College of Computer Science, Sichuan University, Chengdu, China
| | - Josef Lorenz Rumberger
- Max-Delbrueck-Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany; Humboldt University of Berlin, Faculty of Mathematics and Natural Sciences, Berlin, Germany; Charité University Medicine, Berlin, Germany
| | | | - Peter Hirsch
- Max-Delbrueck-Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany; Humboldt University of Berlin, Faculty of Mathematics and Natural Sciences, Berlin, Germany
| | - Lihao Liu
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, United Kingdom
| | - Chenyang Hong
- Department of Computer Science and Engineering, Chinese University of Hong Kong, Hong Kong
| | - Angelica I Aviles-Rivero
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, United Kingdom
| | - Ayushi Jain
- Softsensor.ai, Bridgewater, NJ, United States of America; PRR.ai, TX, United States of America
| | - Heeyoung Ahn
- Department of R&D Center, Arontier Co. Ltd, Seoul, Republic of Korea
| | - Yiyu Hong
- Department of R&D Center, Arontier Co. Ltd, Seoul, Republic of Korea
| | - Hussam Azzuni
- Computer Vision Department, Mohamed Bin Zayed University of Artificial Intelligence, Abu Dhabi, United Arab Emirates
| | - Min Xu
- Computer Vision Department, Mohamed Bin Zayed University of Artificial Intelligence, Abu Dhabi, United Arab Emirates
| | - Mohammad Yaqub
- Computer Vision Department, Mohamed Bin Zayed University of Artificial Intelligence, Abu Dhabi, United Arab Emirates
| | | | - Benoît Piégu
- CNRS, IFCE, INRAE, Université de Tours, PRC, 3780, Nouzilly, France
| | - Bertrand Vernay
- Institut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch, France; Centre National de la Recherche Scientifique, UMR7104, Illkirch, France; Institut National de la Santé et de la Recherche Médicale, INSERM, U1258, Illkirch, France; Université de Strasbourg, Strasbourg, France
| | - Tim Scherr
- Institute for Automation and Applied Informatics Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
| | - Moritz Böhland
- Institute for Automation and Applied Informatics Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
| | - Katharina Löffler
- Institute for Automation and Applied Informatics Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
| | - Jiachen Li
- School of software engineering, South China University of Technology, Guangzhou, China
| | - Weiqin Ying
- School of software engineering, South China University of Technology, Guangzhou, China
| | - Chixin Wang
- School of software engineering, South China University of Technology, Guangzhou, China
| | - David Snead
- Histofy Ltd, Birmingham, United Kingdom; Department of Pathology, University Hospitals Coventry and Warwickshire NHS Trust, Coventry, United Kingdom; Division of Biomedical Sciences, Warwick Medical School, University of Warwick, Coventry, United Kingdom
| | - Shan E Ahmed Raza
- Tissue Image Analytics Centre, University of Warwick, Coventry, United Kingdom
| | - Fayyaz Minhas
- Tissue Image Analytics Centre, University of Warwick, Coventry, United Kingdom
| | - Nasir M Rajpoot
- Tissue Image Analytics Centre, University of Warwick, Coventry, United Kingdom; Histofy Ltd, Birmingham, United Kingdom; Department of Pathology, University Hospitals Coventry and Warwickshire NHS Trust, Coventry, United Kingdom
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2
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Abermann J, Vandecrux B, Scher S, Löffler K, Schalamon F, Trügler A, Fausto R, Schöner W. Learning from Alfred Wegener's pioneering field observations in West Greenland after a century of climate change. Sci Rep 2023; 13:7583. [PMID: 37221260 DOI: 10.1038/s41598-023-33225-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Accepted: 04/10/2023] [Indexed: 05/25/2023] Open
Abstract
The cryosphere in Greenland is currently undergoing strong changes. While remote sensing improves our understanding of spatial and temporal changes across scales, particularly our knowledge of conditions during the pre-satellite era is fragmented. Therefore, high-quality field data from that period can be particularly valuable to better understand changes of the cryosphere in Greenland at climate time scales. At Graz University, the last work-place of Alfred Wegener we have access to the extensive expedition results from their epic 1929-1931 expedition to Greenland. The expedition coincides with the warmest phase of the Arctic early twentieth century warm period. We present an overview of the main findings of the Wegener expedition archive and set it into context with further monitoring activities that occurred since, as well as the results from reanalysis products and satellite imagery. We find that firn temperatures have increased significantly, while snow and firn densities and have remained similar or decreased since. Local conditions at the Qaamarujup Sermia have changed strongly, with a reduction in length of more than 2 km, in thickness by up to 120 m and a rise in terminus position of approximately 300 m. The elevation of the snow line of the years 1929 and 1930 was similar to the one from the extreme years 2012 and 2019. Compared to the satellite era, we find that during the time of the Wegener expedition fjord ice extent was smaller in early spring and larger in late spring. We demonstrate that a well-documented snapshot of archival data can provide a local and regional context for contemporary climate change and that it can serve as the basis for process-based studies on the atmospheric drivers of glacier changes.
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Affiliation(s)
- J Abermann
- Department of Geography and Regional Sciences, University of Graz, Heinrichstraße 36, 8010, Graz, Austria.
| | - B Vandecrux
- Department of Glaciology and Climate, Geological Survey of Denmark and Greenland (GEUS), Øster Voldgade 10, 1350, Copenhagen, Denmark
| | - S Scher
- Know-Center, Research Center for Trustworthy AI and Data, Sandgasse 36, 8010, Graz, Austria
| | - K Löffler
- Department of Geography and Regional Sciences, University of Graz, Heinrichstraße 36, 8010, Graz, Austria
| | - F Schalamon
- Department of Geography and Regional Sciences, University of Graz, Heinrichstraße 36, 8010, Graz, Austria
| | - A Trügler
- Department of Geography and Regional Sciences, University of Graz, Heinrichstraße 36, 8010, Graz, Austria
- Know-Center, Research Center for Trustworthy AI and Data, Sandgasse 36, 8010, Graz, Austria
- Institute of Interactive Systems and Data Science, Graz University of Technology, Sandgasse 36/3, 8010, Graz, Austria
| | - R Fausto
- Department of Glaciology and Climate, Geological Survey of Denmark and Greenland (GEUS), Øster Voldgade 10, 1350, Copenhagen, Denmark
| | - W Schöner
- Department of Geography and Regional Sciences, University of Graz, Heinrichstraße 36, 8010, Graz, Austria
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3
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Maška M, Ulman V, Delgado-Rodriguez P, Gómez-de-Mariscal E, Nečasová T, Guerrero Peña FA, Ren TI, Meyerowitz EM, Scherr T, Löffler K, Mikut R, Guo T, Wang Y, Allebach JP, Bao R, Al-Shakarji NM, Rahmon G, Toubal IE, Palaniappan K, Lux F, Matula P, Sugawara K, Magnusson KEG, Aho L, Cohen AR, Arbelle A, Ben-Haim T, Raviv TR, Isensee F, Jäger PF, Maier-Hein KH, Zhu Y, Ederra C, Urbiola A, Meijering E, Cunha A, Muñoz-Barrutia A, Kozubek M, Ortiz-de-Solórzano C. The Cell Tracking Challenge: 10 years of objective benchmarking. Nat Methods 2023:10.1038/s41592-023-01879-y. [PMID: 37202537 PMCID: PMC10333123 DOI: 10.1038/s41592-023-01879-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Accepted: 04/13/2023] [Indexed: 05/20/2023]
Abstract
The Cell Tracking Challenge is an ongoing benchmarking initiative that has become a reference in cell segmentation and tracking algorithm development. Here, we present a significant number of improvements introduced in the challenge since our 2017 report. These include the creation of a new segmentation-only benchmark, the enrichment of the dataset repository with new datasets that increase its diversity and complexity, and the creation of a silver standard reference corpus based on the most competitive results, which will be of particular interest for data-hungry deep learning-based strategies. Furthermore, we present the up-to-date cell segmentation and tracking leaderboards, an in-depth analysis of the relationship between the performance of the state-of-the-art methods and the properties of the datasets and annotations, and two novel, insightful studies about the generalizability and the reusability of top-performing methods. These studies provide critical practical conclusions for both developers and users of traditional and machine learning-based cell segmentation and tracking algorithms.
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Affiliation(s)
- Martin Maška
- Centre for Biomedical Image Analysis, Faculty of Informatics, Masaryk University, Brno, Czech Republic
| | - Vladimír Ulman
- Centre for Biomedical Image Analysis, Faculty of Informatics, Masaryk University, Brno, Czech Republic
- IT4Innovations National Supercomputing Center, VSB - Technical University of Ostrava, Ostrava, Czech Republic
| | - Pablo Delgado-Rodriguez
- Bioengineering Department, Universidad Carlos III de Madrid, Madrid, Spain
- Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain
| | - Estibaliz Gómez-de-Mariscal
- Bioengineering Department, Universidad Carlos III de Madrid, Madrid, Spain
- Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain
- Optical Cell Biology, Instituto Gulbenkian de Ciência, Oeiras, Portugal
| | - Tereza Nečasová
- Centre for Biomedical Image Analysis, Faculty of Informatics, Masaryk University, Brno, Czech Republic
| | - Fidel A Guerrero Peña
- Centro de Informatica, Universidade Federal de Pernambuco, Recife, Brazil
- Center for Advanced Methods in Biological Image Analysis, Beckman Institute, California Institute of Technology, Pasadena, CA, USA
| | - Tsang Ing Ren
- Centro de Informatica, Universidade Federal de Pernambuco, Recife, Brazil
| | - Elliot M Meyerowitz
- Division of Biology and Biological Engineering and Howard Hughes Medical Institute, California Institute of Technology, Pasadena, CA, USA
| | - Tim Scherr
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
| | - Katharina Löffler
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
| | - Ralf Mikut
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
| | - Tianqi Guo
- The Elmore Family School of Electrical and Computer Engineering, Purdue University, West Lafayette, IN, USA
| | - Yin Wang
- The Elmore Family School of Electrical and Computer Engineering, Purdue University, West Lafayette, IN, USA
| | - Jan P Allebach
- The Elmore Family School of Electrical and Computer Engineering, Purdue University, West Lafayette, IN, USA
| | - Rina Bao
- Boston Children's Hospital and Harvard Medical School, Boston, MA, USA
- CIVA Lab, Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA
| | - Noor M Al-Shakarji
- CIVA Lab, Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA
| | - Gani Rahmon
- CIVA Lab, Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA
| | - Imad Eddine Toubal
- CIVA Lab, Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA
| | - Kannappan Palaniappan
- CIVA Lab, Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA
| | - Filip Lux
- Centre for Biomedical Image Analysis, Faculty of Informatics, Masaryk University, Brno, Czech Republic
| | - Petr Matula
- Centre for Biomedical Image Analysis, Faculty of Informatics, Masaryk University, Brno, Czech Republic
| | - Ko Sugawara
- Institut de Génomique Fonctionnelle de Lyon (IGFL), École Normale Supérieure de Lyon, Lyon, France
- Centre National de la Recherche Scientifique (CNRS), Paris, France
| | | | - Layton Aho
- Department of Electrical and Computer Engineering, Drexel University, Philadelphia, PA, USA
| | - Andrew R Cohen
- Department of Electrical and Computer Engineering, Drexel University, Philadelphia, PA, USA
| | - Assaf Arbelle
- School of Electrical and Computer Engineering, Ben-Gurion University of the Negev, Beersheba, Israel
| | - Tal Ben-Haim
- School of Electrical and Computer Engineering, Ben-Gurion University of the Negev, Beersheba, Israel
| | - Tammy Riklin Raviv
- School of Electrical and Computer Engineering, Ben-Gurion University of the Negev, Beersheba, Israel
| | - Fabian Isensee
- Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany
- Helmholtz Imaging, German Cancer Research Center (DKFZ), Heidelberg, Germany
| | - Paul F Jäger
- Helmholtz Imaging, German Cancer Research Center (DKFZ), Heidelberg, Germany
- Interactive Machine Learning Group, German Cancer Research Center (DKFZ), Heidelberg, Germany
| | - Klaus H Maier-Hein
- Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany
- Pattern Analysis and Learning Group, Department of Radiation Oncology, Heidelberg University Hospital, Heidelberg, Germany
| | - Yanming Zhu
- School of Computer Science and Engineering, University of New South Wales, Sydney, New South Wales, Australia
- Griffith University, Nathan, Queensland, Australia
| | - Cristina Ederra
- Biomedical Engineering Program and Ciberonc, Center for Applied Medical Research, Universidad de Navarra, Pamplona, Spain
| | - Ainhoa Urbiola
- Biomedical Engineering Program and Ciberonc, Center for Applied Medical Research, Universidad de Navarra, Pamplona, Spain
| | - Erik Meijering
- School of Computer Science and Engineering, University of New South Wales, Sydney, New South Wales, Australia
| | - Alexandre Cunha
- Center for Advanced Methods in Biological Image Analysis, Beckman Institute, California Institute of Technology, Pasadena, CA, USA
| | - Arrate Muñoz-Barrutia
- Bioengineering Department, Universidad Carlos III de Madrid, Madrid, Spain
- Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain
| | - Michal Kozubek
- Centre for Biomedical Image Analysis, Faculty of Informatics, Masaryk University, Brno, Czech Republic.
| | - Carlos Ortiz-de-Solórzano
- Biomedical Engineering Program and Ciberonc, Center for Applied Medical Research, Universidad de Navarra, Pamplona, Spain.
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Löffler K, Scherr T, Mikut R. A graph-based cell tracking algorithm with few manually tunable parameters and automated segmentation error correction. PLoS One 2021; 16:e0249257. [PMID: 34492015 PMCID: PMC8423278 DOI: 10.1371/journal.pone.0249257] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Accepted: 08/03/2021] [Indexed: 11/29/2022] Open
Abstract
Automatic cell segmentation and tracking enables to gain quantitative insights into the processes driving cell migration. To investigate new data with minimal manual effort, cell tracking algorithms should be easy to apply and reduce manual curation time by providing automatic correction of segmentation errors. Current cell tracking algorithms, however, are either easy to apply to new data sets but lack automatic segmentation error correction, or have a vast set of parameters that needs either manual tuning or annotated data for parameter tuning. In this work, we propose a tracking algorithm with only few manually tunable parameters and automatic segmentation error correction. Moreover, no training data is needed. We compare the performance of our approach to three well-performing tracking algorithms from the Cell Tracking Challenge on data sets with simulated, degraded segmentation—including false negatives, over- and under-segmentation errors. Our tracking algorithm can correct false negatives, over- and under-segmentation errors as well as a mixture of the aforementioned segmentation errors. On data sets with under-segmentation errors or a mixture of segmentation errors our approach performs best. Moreover, without requiring additional manual tuning, our approach ranks several times in the top 3 on the 6th edition of the Cell Tracking Challenge.
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Affiliation(s)
- Katharina Löffler
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
- Institute of Biological and Chemical Systems - Biological Information Processing, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
- * E-mail:
| | - Tim Scherr
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
| | - Ralf Mikut
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
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5
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Scherr T, Löffler K, Böhland M, Mikut R. Cell segmentation and tracking using CNN-based distance predictions and a graph-based matching strategy. PLoS One 2020; 15:e0243219. [PMID: 33290432 PMCID: PMC7723299 DOI: 10.1371/journal.pone.0243219] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Accepted: 11/17/2020] [Indexed: 12/25/2022] Open
Abstract
The accurate segmentation and tracking of cells in microscopy image sequences is an important task in biomedical research, e.g., for studying the development of tissues, organs or entire organisms. However, the segmentation of touching cells in images with a low signal-to-noise-ratio is still a challenging problem. In this paper, we present a method for the segmentation of touching cells in microscopy images. By using a novel representation of cell borders, inspired by distance maps, our method is capable to utilize not only touching cells but also close cells in the training process. Furthermore, this representation is notably robust to annotation errors and shows promising results for the segmentation of microscopy images containing in the training data underrepresented or not included cell types. For the prediction of the proposed neighbor distances, an adapted U-Net convolutional neural network (CNN) with two decoder paths is used. In addition, we adapt a graph-based cell tracking algorithm to evaluate our proposed method on the task of cell tracking. The adapted tracking algorithm includes a movement estimation in the cost function to re-link tracks with missing segmentation masks over a short sequence of frames. Our combined tracking by detection method has proven its potential in the IEEE ISBI 2020 Cell Tracking Challenge (http://celltrackingchallenge.net/) where we achieved as team KIT-Sch-GE multiple top three rankings including two top performances using a single segmentation model for the diverse data sets.
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Affiliation(s)
- Tim Scherr
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
| | - Katharina Löffler
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
- Institute of Biological and Chemical Systems - Biological Information Processing, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
| | - Moritz Böhland
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
| | - Ralf Mikut
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
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6
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Schott B, Traub M, Schlagenhauf C, Takamiya M, Antritter T, Bartschat A, Löffler K, Blessing D, Otte JC, Kobitski AY, Nienhaus GU, Strähle U, Mikut R, Stegmaier J. EmbryoMiner: A new framework for interactive knowledge discovery in large-scale cell tracking data of developing embryos. PLoS Comput Biol 2018; 14:e1006128. [PMID: 29672531 PMCID: PMC5929571 DOI: 10.1371/journal.pcbi.1006128] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2017] [Revised: 05/01/2018] [Accepted: 04/08/2018] [Indexed: 01/13/2023] Open
Abstract
State-of-the-art light-sheet and confocal microscopes allow recording of entire embryos in 3D and over time (3D+t) for many hours. Fluorescently labeled structures can be segmented and tracked automatically in these terabyte-scale 3D+t images, resulting in thousands of cell migration trajectories that provide detailed insights to large-scale tissue reorganization at the cellular level. Here we present EmbryoMiner, a new interactive open-source framework suitable for in-depth analyses and comparisons of entire embryos, including an extensive set of trajectory features. Starting at the whole-embryo level, the framework can be used to iteratively focus on a region of interest within the embryo, to investigate and test specific trajectory-based hypotheses and to extract quantitative features from the isolated trajectories. Thus, the new framework provides a valuable new way to quantitatively compare corresponding anatomical regions in different embryos that were manually selected based on biological prior knowledge. As a proof of concept, we analyzed 3D+t light-sheet microscopy images of zebrafish embryos, showcasing potential user applications that can be performed using the new framework.
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Affiliation(s)
- Benjamin Schott
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany
- * E-mail: (BS); (JS)
| | - Manuel Traub
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Cornelia Schlagenhauf
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Masanari Takamiya
- Institute of Toxicology and Genetics, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Thomas Antritter
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Andreas Bartschat
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Katharina Löffler
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Denis Blessing
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Jens C. Otte
- Institute of Toxicology and Genetics, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Andrei Y. Kobitski
- Institute of Applied Physics, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - G. Ulrich Nienhaus
- Institute of Toxicology and Genetics, Karlsruhe Institute of Technology, Karlsruhe, Germany
- Institute of Applied Physics, Karlsruhe Institute of Technology, Karlsruhe, Germany
- Institute of Nanotechnology, Karlsruhe Institute of Technology, Karlsruhe, Germany
- Department of Physics, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America
| | - Uwe Strähle
- Institute of Toxicology and Genetics, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Ralf Mikut
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Johannes Stegmaier
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany
- Institute of Imaging and Computer Vision, RWTH Aachen University, Aachen, Germany
- * E-mail: (BS); (JS)
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7
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Heim N, Faron A, Fuchs J, Martini M, Reich RH, Löffler K. Die Lesbarkeit von onlinebasierten Patienteninformationen in der Augenheilkunde. Ophthalmologe 2016; 114:450-456. [DOI: 10.1007/s00347-016-0367-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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8
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Abstract
One key problem to achieve a dynamically stable walking motion with biped robots is to measure and control the actual state of the robot with respect to its environment. Dynamically stable walking on unstructured terrain and fast walking can only be achieved with an orientation sensor. The control system of the biped robot “Johnnie” is designed such that the orientation of the upper body is controlled throughout all phases of the gait pattern. Furthermore, a sophisticated measurement and control of the foot torques has been implemented. In this way, the interaction forces and torques between robot and environment are controlled and tilting of the foot is avoided.
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Affiliation(s)
- K. Löffler
- Institute of Applied Mechanics Technical University of Munich Boltzmannstr. 15, 85747 Garching, Germany
| | - M. Gienger
- Institute of Applied Mechanics Technical University of Munich Boltzmannstr. 15, 85747 Garching, Germany
| | - F. Pfeiffer
- Institute of Applied Mechanics Technical University of Munich Boltzmannstr. 15, 85747 Garching, Germany
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9
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Koinzer S, Löffler K. [Histological diagnostics of enucleated eyes]. Pathologe 2015; 36:397-408; quiz 409-10. [PMID: 26154678 DOI: 10.1007/s00292-015-0037-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
Enucleated eyeglobes represent a challenge for the pathologist, as their appraisal requires specific ophthalmological knowledge. Part 1 of this CME article dealt with macroscopic findings in eyeglobes, in order to facilitate adequate cutting planes to retrieve pathologies histologically. Part 2 which is presented here teaches basic histology of eye-specific tissues (e.g., cornea, anterior chamber angle, retina, and optic nerve). Theses structures show typical changes in blinded eyes. Knowledge of these changes, together with awareness of fundamental ophthalmic disease entities and surgical strategies (see part 1), will many times allow to deduce the pathophysiology that finally culminated in blindness and enucleation. Disease entities more closely discussed in this article include corneal ulcers, rubeotic secondary glaucomas, and chronic degenerative retinal diseases.
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Affiliation(s)
- S Koinzer
- Klinik für Augenheilkunde, Universitätsklinikum Schleswig-Holstein (UKSH), Campus Kiel, Haus 25, Arnold-Heller-Str. 3, 24105, Kiel, Deutschland,
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10
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Koinzer S, Löffler K. [Histological workup of enucleated eyes]. Pathologe 2015; 36:321-32; discussion 333-4. [PMID: 25956811 DOI: 10.1007/s00292-015-0026-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
The appraisal of enucleated eyes presents a particular challenge to pathologists. In German-speaking countries, this task has mostly been in the hands of ophthalmologists. It requires particular ophthalmologic knowledge including nosology, implants, surgical procedures, and nomenclature. This CME article teaches the basics needed for pathologic appraisal of enucleated eyes. The first part focusses on the macroscopic evaluation and describes the exterior and interior of the eye. Competent interpretation of the macroscopic findings is crucial to identify adequate cutting planes for histology. Anatomic landmarks on the globe's exterior and common section planes are described. Diseases that typically lead to enucleation will be explained in detail and illustrated with images. In the second part of this article, a histologic description of eye-specific tissue types is provided.
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Affiliation(s)
- S Koinzer
- Klinik für Augenheilkunde, Universitätsklinikum Schleswig-Holstein (UKSH), Campus Kiel, Haus 25, Arnold-Heller-Str. 3, 24105, Kiel, Deutschland,
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11
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Charbel Issa P, Meyer-ter-Vehn T, Guthoff R, Klink T, Holz FG, Löffler K. [Malignant melanoma of the conjunctiva]. Klin Monbl Augenheilkd 2008; 225:663-6. [PMID: 18642211 DOI: 10.1055/s-2008-1027430] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
BACKGROUND Malignant melanoma of the conjunctiva is a rare tumour. Early disease stages may be difficult to distinguish from benign lesions such as pigmented nevi or primary acquired melanosis. We describe the therapeutic procedure and histological findings in two patients and review the epidemiology and pathogenesis of malignant conjunctival melanoma. Two female patients (84 and 85 years old, respectively) presented with a pigmented tumor close to the limbus with surrounding conjunctival pigmentation and involvement of the cornea. RESULTS Following complete excision of the tumour, conjunctival malignant melanoma arising from primary acquired melanosis was diagnosed histologically. Subsequent treatment with mitomycin C eye drops was initiated. There was no recurrence of the tumor within the follow-up period (24 and 6 months). DISCUSSION Patients with primary acquired melanosis need to be reviewed on a regular basis to detect malignant transformation at an early stage.
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Affiliation(s)
- P Charbel Issa
- Universitäts-Augenklinik, Rheinische Friedrich-Wilhelms-Universität Bonn
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12
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Santel A, Aleku M, Keil O, Endruschat J, Esche V, Fisch G, Dames S, Löffler K, Fechtner M, Arnold W, Giese K, Klippel A, Kaufmann J. A novel siRNA-lipoplex technology for RNA interference in the mouse vascular endothelium. Gene Ther 2006; 13:1222-34. [PMID: 16625243 DOI: 10.1038/sj.gt.3302777] [Citation(s) in RCA: 276] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
For the application of RNA interference (RNAi) in vivo the functional delivery of short interfering RNAs (siRNAs) is still the major obstacle. Therefore, delivery technologies need to be established for the systemic application of RNAi in vivo. Here we report uptake, biodistribution and in vivo efficacy of siRNA molecules formulated into siRNA-lipoplexes. The applied formulation is based on complex formation of positively charged liposomes, a mixture of cationic and fusogenic lipids complexed with the negatively charged siRNA. We determined by fluorescence microscopy the temporal and spatial distribution of fluorescently labeled siRNA-lipoplexes, the body clearance and endothelial cell type specific uptake after single intravenous injection. Furthermore, by using siRNA molecules for targeting endothelia-specifically expressed genes, such as CD31 and Tie2, we were able to demonstrate downregulation of the corresponding mRNA and protein in vivo. Taken together, we show the applicability of this non-viral delivery technology for inducing RNAi in the vasculature of mice after systemic application.
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MESH Headings
- Animals
- Cell Line, Tumor
- Down-Regulation
- Endothelial Cells/metabolism
- Endothelium, Vascular/metabolism
- Genetic Therapy/methods
- Humans
- Immunohistochemistry/methods
- Injections, Intravenous
- Interleukin-12/blood
- Kidney/metabolism
- Liposomes
- Male
- Mice
- Mice, Nude
- Microscopy, Fluorescence
- Platelet Endothelial Cell Adhesion Molecule-1/blood
- Platelet Endothelial Cell Adhesion Molecule-1/genetics
- Polyethyleneimine
- RNA Interference
- RNA, Messenger/analysis
- RNA, Small Interfering/administration & dosage
- RNA, Small Interfering/genetics
- RNA, Small Interfering/metabolism
- Receptor, TIE-2/blood
- Receptor, TIE-2/genetics
- Reverse Transcriptase Polymerase Chain Reaction
- Transfection/methods
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Affiliation(s)
- A Santel
- Atugen AG (SR Pharma plc subsidiary), Berlin, Germany
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13
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Santel A, Aleku M, Keil O, Endruschat J, Esche V, Durieux B, Löffler K, Fechtner M, Röhl T, Fisch G, Dames S, Arnold W, Giese K, Klippel A, Kaufmann J. RNA interference in the mouse vascular endothelium by systemic administration of siRNA-lipoplexes for cancer therapy. Gene Ther 2006; 13:1360-70. [PMID: 16625242 DOI: 10.1038/sj.gt.3302778] [Citation(s) in RCA: 154] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
RNA interference (RNAi) entails the potential for novel therapeutic strategies through the silencing of disease-causing genes in vivo. However, recent studies have raised an issue regarding applicable routes of administration for small interfering RNA (siRNA) molecules as therapeutics. In this study, we demonstrate that liposomally formulated siRNA molecules, the so-called siRNA-lipoplexes, but not naked siRNAs, are delivered to the tumor endothelial cells in vivo by microscopy. In addition, functional intracellular delivery of formulated siRNA targeting the tumor suppressor PTEN is shown in endothelial cells of the liver and tumor. Finally, the therapeutic potential of systemically administered siRNA(CD31)-lipoplexes is established by inhibition of tumor growth in two different xenograft mouse models. Our findings corroborate the applicability of this liposomal siRNA delivery technology for inducing RNAi to modulate gene expression levels in angiogenesis-dependent processes. In addition, our results advocate CD31 as a promising therapeutic target for antiangiogenic intervention. Therefore, our study provides a basis for the development of antiangiogenic cancer therapies based on RNAi.
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Affiliation(s)
- A Santel
- Atugen AG (SR Pharma plc subsidiary), Berlin, Germany
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14
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Koitschev A, Fink S, Rexhausen U, Löffler K, Hörber JKH, Zenner HP, Ruppersberg JP, Langer MG. [Atomic force microscope (AFM). A nanomanipulator for biophysical studies of stereocilia of the cochlear hair cells]. HNO 2002; 50:464-9. [PMID: 12089812 DOI: 10.1007/s00106-001-0573-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
OBJECTIVES Studies of the mechanoelectrical sensor system of the hair cell bundle in the cochlea require a manipulation device that enables controlled force application and movement of individual stereocilia in the nanometer range. METHODS In our atomic force microscope (AFM) setup, the scan is directly controlled in an upright differential interference contrast (DIC) infrared video microscope with a water immersion objective and in the measured AFM image. Here we present studies on hair cells of the mammalian cochlea. RESULTS AND CONCLUSIONS The resulting images revealed the tips of individual stereocilia of living sensory cells of the organ of Corti and the typical shape of the ciliary bundle. Scanning electron-microscopic (SEM) images of the identical hair bundles obtained after AFM investigation demonstrated that up to four AFM manipulations on the same cell did not cause obvious damage to the surface morphology of the stereocilia.
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Affiliation(s)
- A Koitschev
- Sektion Sensorische Biophysik, HNO-Universitäts-Klinik, Silcher Strasse 5, 72076 Tübingen.
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15
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Abstract
The aim of this study was to quantify the tremor of the hand during a natural movement (kinetic tremor) in tremor-dominant parkinsonian patients (n = 13). We used a three-dimensional camera system to kinematically analyze rest and kinetic tremors in an unrestrained reach-to-grasp movement, and additional tremor recordings were performed under standard postural and rest conditions using electromyography and accelerometry. The standard analysis showed a highly synchronized tremor with similar frequencies at rest and in sustained postural tasks, with and without loading. A kinematic recording was used to compare rest and action conditions. A strong inhibition of the resting tremor was present at the onset of the movement and reached its peak during deceleration. A kinetic tremor of low amplitude was present in most of the parkinsonian patients, but its occurrence was confined mainly to the terminal periods of the movement. The frequency of kinetic tremor was significantly higher than that at rest, before the onset of the movement in Parkinson's disease, as determined by the kinematic analysis (mean, 5.5 Hz vs 6.5 Hz; p <0.01). Our results confirm similarities between the tremor at rest and the oscillations during a sustained postural task in classic parkinsonian tremor. In contrast to this stable tremor, which seems to be generated by basal ganglia oscillators, a different pathophysiology of oscillations during motion must be considered. The kinetic tremor is most likely related to an enhancement of the physiologic tremor in the terminal phase of the reach-to-grasp movement.
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Affiliation(s)
- R Wenzelburger
- Department of Neurology, Christian-Albrechts University, Kiel, Germany
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16
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Pfeiffer P, Roßmann T, Löffler K. Controller Design for a Tube Crawling Robot. ACTA ACUST UNITED AC 2000. [DOI: 10.1016/s1474-6670(17)39206-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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17
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Deuschl G, Wenzelburger R, Löffler K, Raethjen J, Stolze H. Essential tremor and cerebellar dysfunction clinical and kinematic analysis of intention tremor. Brain 2000; 123 ( Pt 8):1568-80. [PMID: 10908187 DOI: 10.1093/brain/123.8.1568] [Citation(s) in RCA: 230] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The cerebellum is assumed to play a major role in the pathophysiology of essential tremor (ET). As intention tremor is considered one of the classical features of cerebellar disease, we have assessed a large group of patients with ET for the semiology of the tremor and have performed objective quantitative analysis of a grasping movement in patients with ET, cerebellar disease and a normal control group. We found 25% of the patients to have a moderate or severe kinetic tremor with clear-cut features of a classical intention tremor. Another 33% of the patients had a mild intentional component of their kinetic tremor. Patients with intention tremor (ET(IT)) did not differ from those with predominant postural tremor (ET(PT)) with respect to alcohol sensitivity of the tremor and the frequency of a family history. ET(IT) patients were older and more often showed head and trunk involvement. The onset of this intention tremor has been assessed retrospectively. It was found to begin at a randomly distributed time interval after the onset of the postural tremor, but older patients had a shorter time to development of intention tremor. Quantitative accelerometry of postural tremor showed similar tremor frequencies in both patient groups, but ET(IT) patients had a slightly larger tremor amplitude. Quantitative analysis of a grasping movement using an infrared-camera system was performed in two subgroups of the patients with ET(PT) and ET(IT) and control groups with cerebellar disease or normal subjects. The intention tremor could be quantified objectively as an increased amplitude of curvature during the deceleration and target phase of the movement. The amplitude measurements of intention tremor were clearly abnormal and of comparable magnitude for ET(PT) and cerebellar disease. Additionally, the patients with ET(IT) had a significantly slowed grasping movement during the deceleration and target period. Hypermetria was significantly increased for the patients with ET(IT) and cerebellar disease. We conclude that intention tremor is a feature of ET. ET(IT) patients have abnormalities of their upper limb function compatible with cerebellar disease. This suggests that patients with more advanced ET show abnormalities of cerebellar functions.
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Affiliation(s)
- G Deuschl
- Department of Neurology, Christian-Albrechts-University of Kiel, Germany.
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18
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Abstract
ROMK1 is an inwardly rectifying K+ channel cloned from the outer medulla of rat kidney. We have determined the permeation and blocking characteristics for several monovalent cations in ROMK1 when expressed in Xenopus oocytes, using the two-electrode voltage-clamp technique. The selectivity sequence for monovalent cations as determined by reversal potential changes under bi-ionic conditions was K+ > Rb+ > Cs+ = NH4+ >> Na+ = Li+. The conductivity for the two permeant ions K+ and Rb+ was a saturable function of the external concentration, with Km values of 11.5 +/- 1.3 mmol l-1 (n = 19) and 47.3 +/- 4.8 mmol l-1 (n = 19), respectively. With mixtures of K+ and Rb+, the conductance ratio [Rb]/[K+Rb] was varied between 0 and 1. ROMK1 was blocked by both Cs+ and Ba2+ in a concentration- and voltage-dependent manner. The electrical distance (delta) at which Ba2+ and Cs+ blocked the channel was 0.41 and 0.69, respectively, suggesting that these two ions block at different sites within the pore. Taken together with previous reports, the results indicate that ROMK1 has a multi-ion pore, and that the N-terminus contributes to the pore structure.
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Affiliation(s)
- K Löffler
- Department of Physiology, Worsley Medical and Dental Building, University of Leeds, LEEDS LS2 9NQ, UK
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19
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Stengele E, Ruf G, Jähnchen E, Trenk D, Löffler K, Schulz W, Roskamm H. Short-term hemodynamic, anti-ischemic, and antianginal effects of pirsidomine, a new sydnonimine. Am J Cardiol 1996; 77:937-41. [PMID: 8644642 DOI: 10.1016/s0002-9149(96)00006-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Pirsidomine is a new sydnonimine compound in clinical development. As a prodrug, it is transformed into a nitric oxide-releasing metabolite in vivo. In animal tests there were no signs of tolerance with repeated administration. The short-term effects of 10, 20, and 40 mg of the drug on pulmonary hemodynamics and ischemic parameters were examined at rest and during exercise in a double-blind, randomized, placebo-controlled study. The study included 48 patients with documented coronary artery disease and exercise-induced ST-segment depression. Compared with the baseline test, there was a reduction of diastolic pulmonary artery pressure with pirsidomine at rest (placebo: -0.4 +/- 0.5 mm Hg; 10 mg: - 1.5 +/- 2.4 mm Hg; 20 mg: - 1.4 +/- 1.1 mm Hg; 40 mg: - 2.3 +/- 1.3 mm Hg [p < 0.05 ]) and at the highest comparable workload (placebo: -2.8 +/- 1.9 mm Hg; 10 mg: -7.3 +/- 6.8 mm Hg; 20 mg: -8.4 +/- 7.9 mm Hg [p <0.05]; 40 mg: -13.8 +/- 7.1 mm Hg [p <0.05]). ST-segment depression decreased at the highest comparable workload (placebo: -0.33 +/- 0.49 mm; 10 mg: -1.33 +/- 1.37 mm [p <0.05]; 20 mg: -1.33 +/- 0.83 mm [p <0.05]; 40 mg: -1.96 +/- 0.86 mm [p <0.05]) and total exercise time increased (placebo: 15 +/- 48 s; 10 mg: 98 +/- 126 s; 20 mg: 165 +/- 251 s [p <0.05]; 40 mg: 155 +/- 174 s [p <0.05]). Of 40 patients who complained of angina pectoris symptoms in the baseline test, 15 became free of angina pectoris with pirsidomine. Compared with placebo, blood pressure, heart rate during exercise, and cardiac output during exercise showed no significant change. Plasma concentration response relations of the metabolite revealed concentrations that caused a half-maximum effect of 6 ng/ml, 13 ng/ml, 20 ng/ml, and 28 ng/ml in reduction of ST-segment depression, reduction of diastolic pulmonary artery pressure, relief of angina pectoris symptoms, and an increase in exercise duration, respectively. Thus, pirsidomine is an effective anti-ischemic and antianginal agent. A significant preload reduction was obtained with plasma metabolite concentrations lower than those necessary to achieve a satisfactory antianginal effect.
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Affiliation(s)
- E Stengele
- Department of Clinical Pharmacology, Heart-Center, Bad Krozingen, Germany
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20
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Thijs L, Celis H, Kiowski W, Löffler K, Middeke M, Schulz W, Staessen J, Amery A. Double-blind comparison of antihypertensive treatment with ramipril and piretanide, given alone or in combination. J Cardiovasc Pharmacol 1995; 26:33-8. [PMID: 7564362 DOI: 10.1097/00005344-199507000-00006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
In a double-blind, randomized, multicenter trial, we compared the efficacy and safety of the fixed combination of 5 mg ramipril and 6 mg piretanide and the respective component monotherapies in hypertensive patients [supine diastolic blood pressure (DBP) 100-114 mm Hg]. After a single-blind run-in period on placebo, 611 patients were randomized to ramipril (n = 209), piretanide (n = 201), or the combination therapy (n = 201). At randomization, the three groups had the same characteristics (51% men, age 55 +/- 10 years, BP 165 +/- 18/104 +/- 6 mm Hg). At 4 weeks, BP decreased more with combined therapy than with monotherapy. As compared with piretanide monotherapy, the gain in the antihypertensive effect in the supine position averaged 2.1 mm Hg [90% confidence interval (CI) -0.8-5.0 mm Hg; p = 0.07] systolic BP (SBP) and 1.9 mm Hg (CI 0.3-3.5 mm Hg, p = 0.02) DBP and, as compared with ramipril monotherapy, these differences were 4.2 mm Hg (CI 1.3-7.0 mm Hg, p = 0.008) and 2.0 mm Hg (CI 0.5-3.6 mm Hg, p = 0.009). The incidence of adverse events (AE) and the changes in biochemical measurements were similar in the three treatment groups with the exception of spontaneously reported polyuria and serum uric acid concentration. Polyuria was reported more frequently (p < 0.001) with piretanide therapy (n = 23) and combined therapy (n = 19) than with ramipril therapy (n = 1).(ABSTRACT TRUNCATED AT 250 WORDS)
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Affiliation(s)
- L Thijs
- Department of Cardiovascular and Molecular Research, University of Leuven, Belgium
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21
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Löffler K, Schwegler JS, Silbernagl S. Properties and regulation of pH-dependent cation channels in the apical membrane of cultured proximal tubule cells. Ren Physiol Biochem 1995; 18:161-8. [PMID: 7481067 DOI: 10.1159/000173913] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
The established opossum kidney (OK) cell line serves as a model system for ion and substrate transport in the renal proximal tubule. Previous experiments on OK cells revealed a channel-mediated Na+ conductance which is regulated by intracellular pH (pHi). In this study we report on patch clamp experiments determining the properties and pHi dependence of a cation channel located in the apical membrane. This channel is selective for sodium over chloride but discriminates poorly between the monovalent cations Na+,K+,Li+ and Cs+. Its open probability (P(o)) rises at depolarising membrane potentials. Under normal conditions the channel is inactive in the cell-attached patch mode and is activated upon excision. However, after excision the channel usually runs down within 30-90 s which cannot be overcome by either altering the Ca(2+)-concentration (10(-3) mol/l, 10(-6) mol/l, Ca(2+)-free) or adding 1 mmol/l Mg-ATP to the bath solution. In the cell-attached patch mode the channel could be activated by decreasing pHi from pH 7.4 to pH 6.5, by either the ammonium prepulse technique or the nigericin K+ method, in more than 50% of the experiments performed. In the renal proximal tubule such a non-selective cation channel would constitute a functional Na+ channel and might therefore support Na+ reabsorption especially during the intracellular acidification due to hormonal inhibition of the Na+/H+ exchanger.
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Affiliation(s)
- K Löffler
- Physiologisches Institut, Universität Würzburg, Deutschland
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22
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Ruf G, Gera S, Luus HG, Trenk D, de la Rey N, Löffler K, Schulz W, Jähnchen E. Pharmacokinetics and pharmacodynamics of ramipril and piretanide administered alone and in combination. Eur J Clin Pharmacol 1994; 46:545-50. [PMID: 7995323 DOI: 10.1007/bf00196113] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
The pharmacokinetics and pharmacodynamics of single oral doses of 5 mg ramipril and 6 mg piretanide administered separately and in combination were determined in a single blind, randomised, 3-period cross-over study in 24 healthy male volunteers. The peak plasma concentrations of ramipril and ramiprilat increased slightly (from 11.9 to 14.8 ng/ml, and from 6.39 to 8.96 ng/ml, respectively) as did the area under the plasma concentration-time curve of ramipril (0-4 h) and ramiprilat (0-24 h) (from 15.8 to 19.8 ng.ml-1.h, and from 63.4 to 74.6 ng.ml-1.h, respectively). The urinary excretion of ramiprilat also rose (from 6.82 to 7.73% of dose) following simultaneous treatment with piretanide. These effects were probably due to reduced first-pass metabolism of ramipril/ramiprilat to inactive metabolites. The blood pressure lowering effect, the time course of inhibition of ACE activity in plasma and the concentration-response relationship for the inhibition of plasma ACE activity were not affected by piretanide. The peak plasma concentration of piretanide was somewhat reduced (from 285 to 244 ng/ml) following simultaneous treatment with ramipril. No other pharmacokinetic parameter was affected. Piretanide increased urine flow, and sodium, chloride and potassium excretion, especially during the first 2 hours following administration. These pharmacodynamic parameters were not affected by ramipril. Thus, simultaneous administration of single oral doses of ramipril and piretanide caused modest changes in the peak and average plasma concentrations of both drugs, which did not lead to detectable alterations in the pharmacodynamic parameters measured in healthy volunteers.
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Affiliation(s)
- G Ruf
- Herz-Zentrum, Department of Clinical Pharmacology, Bad Krozingen, Germany
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23
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Abstract
To test the dose responses of piretanide, ramipril, and their combination in patients with essential hypertension, a prospective, randomized, double-blind, placebo-controlled trial was conducted in 480 patients. Twelve separate groups were studied: placebo, piretanide 3 mg, piretanide 6 mg, ramipril 2.5 mg, ramipril 5 mg, ramipril 10 mg, and their combinations, as single daily morning doses. Patients were randomized after a 2-week run-in period without drugs; treatment was given for 6 weeks. A dose response compared with placebo was found for both drugs; the combination was more effective than either drug alone. Piretanide 6 mg, combined with ramipril 5 mg, provided optimal blood pressure reduction. Self-reported adverse effects of both drugs and their combinations did not exceed those reported for placebo. A surface analysis suggested that piretanide primarily reduced systolic blood pressure, whereas ramipril was more effective in reducing diastolic blood pressure. The data attest to a combined efficacy of piretanide and ramipril in decreasing arterial blood pressure.
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Affiliation(s)
- V Homuth
- Nephrology and Hypertension Section, Franz-Volhard-Klinik, Berlin, Germany
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24
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Schulz W, Löffler K, Voleske P, Resag K. [Determination of duration of action of beta blockers with Holter-ECG registration]. Arzneimittelforschung 1991; 41:489-93. [PMID: 1680325] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Duration of Action of Betaadrenergic Blockers Determined with Holter-ECG in Healthy Volunteers In phase I, the duration of action of betaadrenergic blockers is usually determined from the reduction of exercise induced tachycardia. In this randomized placebocontrolled doubleblind trial, however, ambulatory 24-h heart rate monitoring was used in 12 healthy volunteers to evaluate the duration of action of the new cardioselective and vasodilating betaadrenergic blocker ridazolol (CAS413). After the control periods as well as after prospectively defined hours the following mean values of heart rate were obtained: Ridazolol: Control 65.2, 12 h 69.6, 16 h 64.9, 24 h 74.0 beasts/min, placebo: Control 64.8, 12 h 78.5, 16 h 69.7, 24 h 73.5 beats/min. Differences after 12 h were statistically significant and would have been significant after 16 h with more volunteers. Additional explorative analysis with adjustment of significance levels for multiple analysis resulted in significant effects from 2 to 14 h. It was not useful, however, to calculate the time of maximal and half-maximal effects because of the large individual variation. Holter-monitoring of spontaneous heart rate in volunteers provides a rapid orientation on the duration of action of betaadrenergic blockers. The method allows to fix prospectively reasonable times of evaluation in efficacy trials in patients with coronary artery disease.
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Affiliation(s)
- W Schulz
- Klinische Forschung Cassella AG, Frankfurt/Main
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25
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Dunker H, Eggers G, Löffler K. [Neuroendocrine cancer of the skin (Merkel cell carcinoma) in childhood]. Pathologe 1988; 9:370-4. [PMID: 2467279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- H Dunker
- Institut für Pathologische Anatomie, Bereich Medizin der Wilhelm-Pieck-Universität Rostock
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26
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Kalkowski H, Busch H, Huth JH, Förster J, Löffler K. [Therapeutic problems following open heart surgery]. Z Gesamte Inn Med 1971; 26:Suppl:300-3. [PMID: 5149922] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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27
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Huth JH, Lange G, Förster HJ, Busch H, Kalkowski H, Löffler K. [Comparative studies of the orthograde and retrograde perfusion]. Zentralbl Chir 1971; 96:1012-5. [PMID: 5093621] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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28
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Pelz W, Püschel W, Schellenberger H, Löffler K. Ringspaltung von Azopyrazolonen zu Osazonen und deren oxydative Kupplung mit Farbentwicklern. Angew Chem Int Ed Engl 1960. [DOI: 10.1002/ange.19600722409] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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