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Chen T, Zhang J, Xu Z, Redmond SJ, Lovell NH, Liu G, Wang C. Energy-Efficient Sleep Apnea Detection Using a Hyperdimensional Computing Framework Based on Wearable Bracelet Photoplethysmography. IEEE Trans Biomed Eng 2024; PP:1-12. [PMID: 38483799 DOI: 10.1109/tbme.2024.3377270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/30/2024]
Abstract
OBJECTIVE Sleep apnea syndrome (SAS) is a common sleep disorder, which has been shown to be an important contributor to major neurocognitive and cardiovascular sequelae. Considering current diagnostic strategies are limited with bulky medical devices and high examination expenses, a large number of cases go undiagnosed. To enable large-scale screening for SAS, wearable photoplethysmography (PPG) technologies have been used as an early detection tool. However, existing algorithms are energy-intensive and require large amounts of memory resources, which are believed to be the major drawbacks for further promotion of wearable devices for SAS detection. METHODS In this paper, an energy-efficient method of SAS detection based on hyperdimensional computing (HDC) is proposed. Inspired by the phenomenon of chunking in cognitive psychology as a memory mechanism for improving working memory efficiency, we proposed a one-dimensional block local binary pattern (1D-BlockLBP) encoding scheme combined with HDC to preserve dominant dynamical and temporal characteristics of pulse rate signals from wearable PPG devices. RESULTS Our method achieved 70.17% accuracy in sleep apnea segment detection, which is comparable with traditional machine learning methods. Additionally, our method achieves up to 67× lower memory footprint, 68× latency reduction, and 93× energy saving on the ARM Cortex-M4 processor. CONCLUSION The simplicity of hypervector operations in HDC and the novel 1D-BlockLBP encoding effectively preserve pulse rate signal characteristics with high computational efficiency. SIGNIFICANCE This work provides a scalable solution for long-term home-based monitoring of sleep apnea, enhancing the feasibility of consistent patient care.
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Zhang X, Li Q, Li W, Guo Y, Zhang J, Guo C, Chang K, Lovell NH. FD-Net: Feature Distillation Network for Oral Squamous Cell Carcinoma Lymph Node Segmentation in Hyperspectral Imagery. IEEE J Biomed Health Inform 2024; 28:1552-1563. [PMID: 38446656 DOI: 10.1109/jbhi.2024.3350245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/08/2024]
Abstract
Oral squamous cell carcinoma (OSCC) has the characteristics of early regional lymph node metastasis. OSCC patients often have poor prognoses and low survival rates due to cervical lymph metastases. Therefore, it is necessary to rely on a reasonable screening method to quickly judge the cervical lymph metastastic condition of OSCC patients and develop appropriate treatment plans. In this study, the widely used pathological sections with hematoxylin-eosin (H&E) staining are taken as the target, and combined with the advantages of hyperspectral imaging technology, a novel diagnostic method for identifying OSCC lymph node metastases is proposed. The method consists of a learning stage and a decision-making stage, focusing on cancer and non-cancer nuclei, gradually completing the lesions' segmentation from coarse to fine, and achieving high accuracy. In the learning stage, the proposed feature distillation-Net (FD-Net) network is developed to segment the cancerous and non-cancerous nuclei. In the decision-making stage, the segmentation results are post-processed, and the lesions are effectively distinguished based on the prior. Experimental results demonstrate that the proposed FD-Net is very competitive in the OSCC hyperspectral medical image segmentation task. The proposed FD-Net method performs best on the seven segmentation evaluation indicators: MIoU, OA, AA, SE, CSI, GDR, and DICE. Among these seven evaluation indicators, the proposed FD-Net method is 1.75%, 1.27%, 0.35%, 1.9%, 0.88%, 4.45%, and 1.98% higher than the DeepLab V3 method, which ranks second in performance, respectively. In addition, the proposed diagnosis method of OSCC lymph node metastasis can effectively assist pathologists in disease screening and reduce the workload of pathologists.
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Ooi JH, Lim R, Seng H, Tan MP, Goh CH, Lovell NH, Argha A, Beh HC, Md Sari NA, Lim E. Non-invasive parameters of autonomic function using beat-to-beat cardiovascular variations and arterial stiffness in hypertensive individuals: a systematic review. Biomed Eng Online 2024; 23:23. [PMID: 38378540 PMCID: PMC10880234 DOI: 10.1186/s12938-024-01202-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Accepted: 01/04/2024] [Indexed: 02/22/2024] Open
Abstract
PURPOSE Non-invasive, beat-to-beat variations in physiological indices provide an opportunity for more accessible assessment of autonomic dysfunction. The potential association between the changes in these parameters and arterial stiffness in hypertension remains poorly understood. This systematic review aims to investigate the association between non-invasive indicators of autonomic function based on beat-to-beat cardiovascular signals with arterial stiffness in individuals with hypertension. METHODS Four electronic databases were searched from inception to June 2022. Studies that investigated non-invasive parameters of arterial stiffness and autonomic function using beat-to-beat cardiovascular signals over a period of > 5min were included. Study quality was assessed using the STROBE criteria. Two authors screened the titles, abstracts, and full texts independently. RESULTS Nineteen studies met the inclusion criteria. A comprehensive overview of experimental design for assessing autonomic function in terms of baroreflex sensitivity and beat-to-beat cardiovascular variabilities, as well as arterial stiffness, was presented. Alterations in non-invasive indicators of autonomic function, which included baroreflex sensitivity, beat-to-beat cardiovascular variabilities and hemodynamic changes in response to autonomic challenges, as well as arterial stiffness, were identified in individuals with hypertension. A mixed result was found in terms of the association between non-invasive quantitative autonomic indices and arterial stiffness in hypertensive individuals. Nine out of 12 studies which quantified baroreflex sensitivity revealed a significant association with arterial stiffness parameters. Three studies estimated beat-to-beat heart rate variability and only one study reported a significant relationship with arterial stiffness indices. Three out of five studies which studied beat-to-beat blood pressure variability showed a significant association with arterial structural changes. One study revealed that hemodynamic changes in response to autonomic challenges were significantly correlated with arterial stiffness parameters. CONCLUSIONS The current review demonstrated alteration in autonomic function, which encompasses both the sympathetic and parasympathetic modulation of sinus node function and vasomotor tone (derived from beat-to-beat cardiovascular signals) in hypertension, and a significant association between some of these parameters with arterial stiffness. By employing non-invasive measurements to monitor changes in autonomic function and arterial remodeling in individuals with hypertension, we would be able to enhance our ability to identify individuals at high risk of cardiovascular disease. Understanding the intricate relationships among these cardiovascular variability measures and arterial stiffness could contribute toward better individualized treatment for hypertension in the future. SYSTEMATIC REVIEW REGISTRATION PROSPERO ID: CRD42022336703. Date of registration: 12/06/2022.
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Affiliation(s)
- Jia Hui Ooi
- Department of Biomedical Engineering, Faculty of Engineering, Universiti Malaya, 50603, Kuala Lumpur, Malaysia
- Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, NSW, Australia
| | - Renly Lim
- Quality Use of Medicines and Pharmacy Research Centre, UniSA Clinical and Health Sciences, University of South Australia, Adelaide, 5000, Australia
| | - Hansun Seng
- South West Sydney (SWS), School of Clinical Medicine, UNSW Sydney, Sydney, NSW, Australia
- Woolcock Vietnam Research Group, Woolcock Institute of Medical Research, Sydney, Australia
| | - Maw Pin Tan
- Ageing and Age‑Associated Disorders Research Group, Department of Medicine, Faculty of Medicine, Universiti Malaya, 50603, Kuala Lumpur, Malaysia
| | - Choon Hian Goh
- Department of Mechatronics and BioMedical Engineering, Lee Kong Chian Faculty of Engineering and Science, Universiti Tunku Abdul Rahman, Bandar Sungai Long, Kajang, 43200, Selangor, Malaysia
| | - Nigel H Lovell
- Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, NSW, Australia
- Tyree Institute of Health Engineering (IHealthE), UNSW Sydney, Sydney, NSW, Australia
| | - Ahmadreza Argha
- Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, NSW, Australia
- Tyree Institute of Health Engineering (IHealthE), UNSW Sydney, Sydney, NSW, Australia
| | - Hooi Chin Beh
- Department of Primary Care Medicine, Faculty of Medicine, Universiti Malaya, Kuala Lumpur, Malaysia
| | - Nor Ashikin Md Sari
- Division of Cardiology, Department of Medicine, Universiti Malaya, Kuala Lumpur, Malaysia
| | - Einly Lim
- Department of Biomedical Engineering, Faculty of Engineering, Universiti Malaya, 50603, Kuala Lumpur, Malaysia.
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Boord MS, Brown P, Soriano J, Meola T, Dumuid D, Milte R, Roughead EE, Lovell NH, Stone H, Whitehouse J, Janetzki JL, Gebreyohannes EA, Lim R. A Digitally Enabled, Pharmacist service to detecT medicine harms in residential aged care (nursing home) (ADEPT): protocol for a feasibility study. BMJ Open 2024; 14:e080148. [PMID: 38341209 PMCID: PMC10862280 DOI: 10.1136/bmjopen-2023-080148] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Accepted: 01/30/2024] [Indexed: 02/12/2024] Open
Abstract
INTRODUCTION This feasibility study aims to develop and test a new model of practice in Australia using digital technologies to enable pharmacists to monitor early signs and symptoms of medicine-induced harms in residential aged care. METHODS AND ANALYSIS Thirty residents will be recruited from an aged care facility in South Australia. The study will be conducted in two phases. In phase I, the study team will work with aged care software providers and developers of digital technologies (a wearable activity tracker and a sleep tracking sensor) to gather physical activity and sleep data, as well as medication and clinical data from the electronic medication management system and aged care clinical software. Data will be centralised into a cloud-based monitoring platform (TeleClinical Care (TCC)). The TCC will be used to create dashboards that will include longitudinal visualisations of changes in residents' health, function and medicine use over time. In phase II, the on-site pharmacist will use the centralised TCC platform to monitor each resident's medicine, clinical, physical activity and sleep data to identify signs of medicine-induced harms over a 12-week period.A mixed methods process evaluation applying the RE-AIM (Reach, Effectiveness, Adoption, Implementation, Maintenance) evaluation framework will be used to assess the feasibility of the service. Outcome measures include service reach, changes in resident symptom scores (measured using the Edmonton Symptom Assessment System), number of medication adverse events detected, changes in physical activity and sleep, number of pharmacist recommendations provided, cost analysis and proportion of all pharmacists' recommendations implemented at 4-week, 8-week and 12-week postbaseline period. ETHICS AND DISSEMINATION Ethical approval has been obtained from the University of South Australia's Human Research Ethics Committee (205098). Findings will be disseminated through published manuscripts, conference presentations and reporting to the study funder. TRIAL REGISTRATION NUMBER ACTRN12623000506695.
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Affiliation(s)
- Monique S Boord
- Quality Use of Medicines and Pharmacy Research Centre, University of South Australia, Adelaide, South Australia, Australia
| | - Peter Brown
- Tyree Foundation Institute of Health Engineering (IHealthE) and Graduate School of Biomedical Engineering, University of New South Wales, Sydney, New South Wales, Australia
| | - Julian Soriano
- Tanunda Lutheran Home Inc, Tanunda, South Australia, Australia
- SA Pharmacy, Adelaide, South Australia, Australia
| | - Tahlia Meola
- UniSA Clinical and Health Sciences, University of South Australia, Adelaide, South Australia, Australia
| | - Dorothea Dumuid
- Alliance for Research in Exercise, Nutrition and Activity, University of South Australia, Adelaide, South Australia, Australia
| | - Rachel Milte
- Rehabilitation, Aged and Extended Care, Flinders University, Adelaide, South Australia, Australia
| | - Elizabeth E Roughead
- Quality Use of Medicines and Pharmacy Research Centre, UniSA Clinical and Health Sciences, University of South Australia, Adelaide, South Australia, Australia
| | - Nigel H Lovell
- Tyree Foundation Institute of Health Engineering (IHealthE) and Graduate School of Biomedical Engineering, University of New South Wales, Sydney, New South Wales, Australia
| | - Helen Stone
- Pharmaceutical Society of Australia, Deakin, Australian Capital Territory, Australia
| | | | - Jack L Janetzki
- Quality Use of Medicines and Pharmacy Research Centre, University of South Australia, Adelaide, South Australia, Australia
- UniSA Clinical and Health Sciences, University of South Australia, Adelaide, South Australia, Australia
| | - Eyob Alemayehu Gebreyohannes
- Quality Use of Medicines and Pharmacy Research Centre, UniSA Clinical and Health Sciences, University of South Australia, Adelaide, South Australia, Australia
- School of Allied Health, The University of Western Australia, Perth, Western Australia, Australia
| | - Renly Lim
- Quality Use of Medicines and Pharmacy Research Centre, UniSA Clinical and Health Sciences, University of South Australia, Adelaide, South Australia, Australia
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Muralidharan M, Guo T, Tsai D, Lee JI, Fried S, Dokos S, Morley JW, Lovell NH, Shivdasani MN. Neural activity of retinal ganglion cells under continuous, dynamically-modulated high frequency electrical stimulation. J Neural Eng 2024; 21:015001. [PMID: 38290151 DOI: 10.1088/1741-2552/ad2404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Accepted: 01/30/2024] [Indexed: 02/01/2024]
Abstract
Objective.Current retinal prosthetics are limited in their ability to precisely control firing patterns of functionally distinct retinal ganglion cell (RGC) types. The aim of this study was to characterise RGC responses to continuous, kilohertz-frequency-varying stimulation to assess its utility in controlling RGC activity.Approach.We usedin vitropatch-clamp experiments to assess electrically-evoked ON and OFF RGC responses to frequency-varying pulse train sequences. In each sequence, the stimulation amplitude was kept constant while the stimulation frequency (0.5-10 kHz) was changed every 40 ms, in either a linearly increasing, linearly decreasing or randomised manner. The stimulation amplitude across sequences was increased from 10 to 300µA.Main results.We found that continuous stimulation without rest periods caused complex and irreproducible stimulus-response relationships, primarily due to strong stimulus-induced response adaptation and influence of the preceding stimulus frequency on the response to a subsequent stimulus. In addition, ON and OFF populations showed different sensitivities to continuous, frequency-varying pulse trains, with OFF cells generally exhibiting more dependency on frequency changes within a sequence. Finally, the ability to maintain spiking behaviour to continuous stimulation in RGCs significantly reduced over longer stimulation durations irrespective of the frequency order.Significance.This study represents an important step in advancing and understanding the utility of continuous frequency modulation in controlling functionally distinct RGCs. Our results indicate that continuous, kHz-frequency-varying stimulation sequences provide very limited control of RGC firing patterns due to inter-dependency between adjacent frequencies and generally, different RGC types do not display different frequency preferences under such stimulation conditions. For future stimulation strategies using kHz frequencies, careful consideration must be given to design appropriate pauses in stimulation, stimulation frequency order and the length of continuous stimulation duration.
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Affiliation(s)
| | - Tianruo Guo
- Graduate School of Biomedical Engineering, UNSW, Sydney, NSW 2052, Australia
| | - David Tsai
- Graduate School of Biomedical Engineering, UNSW, Sydney, NSW 2052, Australia
- School of Electrical Engineering & Telecommunications, UNSW, Sydney, NSW 2052, Australia
| | - Jae-Ik Lee
- Department of Neurosurgery, Massachusetts General Hospital and Harvard Medical School, Boston, MA, United States of America
| | - Shelley Fried
- Department of Neurosurgery, Massachusetts General Hospital and Harvard Medical School, Boston, MA, United States of America
| | - Socrates Dokos
- Graduate School of Biomedical Engineering, UNSW, Sydney, NSW 2052, Australia
| | - John W Morley
- Graduate School of Biomedical Engineering, UNSW, Sydney, NSW 2052, Australia
- School of Medicine, Western Sydney University, Penrith, NSW 2751, Australia
| | - Nigel H Lovell
- Graduate School of Biomedical Engineering, UNSW, Sydney, NSW 2052, Australia
- Tyree Institute of Health Engineering (iHealthE), UNSW, Sydney, NSW 2052, Australia
| | - Mohit N Shivdasani
- Graduate School of Biomedical Engineering, UNSW, Sydney, NSW 2052, Australia
- Tyree Institute of Health Engineering (iHealthE), UNSW, Sydney, NSW 2052, Australia
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Zahedi R, Ghamsari R, Argha A, Macphillamy C, Beheshti A, Alizadehsani R, Lovell NH, Lotfollahi M, Alinejad-Rokny H. Deep learning in spatially resolved transcriptfomics: a comprehensive technical view. Brief Bioinform 2024; 25:bbae082. [PMID: 38483255 PMCID: PMC10939360 DOI: 10.1093/bib/bbae082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Revised: 12/22/2024] [Accepted: 02/13/2024] [Indexed: 03/17/2024] Open
Abstract
Spatially resolved transcriptomics (SRT) is a pioneering method for simultaneously studying morphological contexts and gene expression at single-cell precision. Data emerging from SRT are multifaceted, presenting researchers with intricate gene expression matrices, precise spatial details and comprehensive histology visuals. Such rich and intricate datasets, unfortunately, render many conventional methods like traditional machine learning and statistical models ineffective. The unique challenges posed by the specialized nature of SRT data have led the scientific community to explore more sophisticated analytical avenues. Recent trends indicate an increasing reliance on deep learning algorithms, especially in areas such as spatial clustering, identification of spatially variable genes and data alignment tasks. In this manuscript, we provide a rigorous critique of these advanced deep learning methodologies, probing into their merits, limitations and avenues for further refinement. Our in-depth analysis underscores that while the recent innovations in deep learning tailored for SRT have been promising, there remains a substantial potential for enhancement. A crucial area that demands attention is the development of models that can incorporate intricate biological nuances, such as phylogeny-aware processing or in-depth analysis of minuscule histology image segments. Furthermore, addressing challenges like the elimination of batch effects, perfecting data normalization techniques and countering the overdispersion and zero inflation patterns seen in gene expression is pivotal. To support the broader scientific community in their SRT endeavors, we have meticulously assembled a comprehensive directory of readily accessible SRT databases, hoping to serve as a foundation for future research initiatives.
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Affiliation(s)
- Roxana Zahedi
- UNSW BioMedical Machine Learning Lab (BML), The Graduate School of Biomedical Engineering, UNSW Sydney, 2052, NSW, Australia
| | - Reza Ghamsari
- UNSW BioMedical Machine Learning Lab (BML), The Graduate School of Biomedical Engineering, UNSW Sydney, 2052, NSW, Australia
| | - Ahmadreza Argha
- The Graduate School of Biomedical Engineering, UNSW Sydney, 2052, NSW, Australia
- Tyree Institute of Health Engineering (IHealthE), UNSW Sydney, 2052, NSW, Australia
| | - Callum Macphillamy
- School of Animal and Veterinary Sciences, University of Adelaide, Roseworthy, 5371, Australia
| | - Amin Beheshti
- School of Computing, Macquarie University, Sydney, 2109, Australia
| | - Roohallah Alizadehsani
- Institute for Intelligent Systems Research and Innovation (IISRI), Deakin University, Waurn Ponds, Melbourne, VIC, 3216, Australia
| | - Nigel H Lovell
- The Graduate School of Biomedical Engineering, UNSW Sydney, 2052, NSW, Australia
- Tyree Institute of Health Engineering (IHealthE), UNSW Sydney, 2052, NSW, Australia
| | - Mohammad Lotfollahi
- Computational Health Center, Helmholtz Munich, Germany
- Wellcome Sanger Institute, Cambridge, UK
| | - Hamid Alinejad-Rokny
- UNSW BioMedical Machine Learning Lab (BML), The Graduate School of Biomedical Engineering, UNSW Sydney, 2052, NSW, Australia
- Tyree Institute of Health Engineering (IHealthE), UNSW Sydney, 2052, NSW, Australia
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Zhu K, Phan PT, Sharma B, Davies J, Thai MT, Hoang TT, Nguyen CC, Ji A, Nicotra E, La HM, Vo-Doan TT, Phan HP, Lovell NH, Do TN. A Smart, Textile-Driven, Soft Exosuit for Spinal Assistance. Sensors (Basel) 2023; 23:8329. [PMID: 37837159 PMCID: PMC10575006 DOI: 10.3390/s23198329] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2023] [Revised: 10/04/2023] [Accepted: 10/06/2023] [Indexed: 10/15/2023]
Abstract
Work-related musculoskeletal disorders (WMSDs) are often caused by repetitive lifting, making them a significant concern in occupational health. Although wearable assist devices have become the norm for mitigating the risk of back pain, most spinal assist devices still possess a partially rigid structure that impacts the user's comfort and flexibility. This paper addresses this issue by presenting a smart textile-actuated spine assistance robotic exosuit (SARE), which can conform to the back seamlessly without impeding the user's movement and is incredibly lightweight. To detect strain on the spine and to control the smart textile automatically, a soft knitting sensor that utilizes fluid pressure as a sensing element is used. Based on the soft knitting hydraulic sensor, the robotic exosuit can also feature the ability of monitoring and rectifying human posture. The SARE is validated experimentally with human subjects (N = 4). Through wearing the SARE in stoop lifting, the peak electromyography (EMG) signals of the lumbar erector spinae are reduced by 22.8% ± 12 for lifting 5 kg weights and 27.1% ± 14 in empty-handed conditions. Moreover, the integrated EMG decreased by 34.7% ± 11.8 for lifting 5 kg weights and 36% ± 13.3 in empty-handed conditions. In summary, the artificial muscle wearable device represents an anatomical solution to reduce the risk of muscle strain, metabolic energy cost and back pain associated with repetitive lifting tasks.
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Affiliation(s)
- Kefan Zhu
- Graduate School of Biomedical Engineering, Faculty of Engineering, UNSW Sydney, Kensington Campus, Sydney, NSW 2052, Australia; (K.Z.); (B.S.); (J.D.); (M.T.T.); (T.T.H.); (C.C.N.); (A.J.); (E.N.); (N.H.L.)
| | - Phuoc Thien Phan
- Graduate School of Biomedical Engineering, Faculty of Engineering, UNSW Sydney, Kensington Campus, Sydney, NSW 2052, Australia; (K.Z.); (B.S.); (J.D.); (M.T.T.); (T.T.H.); (C.C.N.); (A.J.); (E.N.); (N.H.L.)
| | - Bibhu Sharma
- Graduate School of Biomedical Engineering, Faculty of Engineering, UNSW Sydney, Kensington Campus, Sydney, NSW 2052, Australia; (K.Z.); (B.S.); (J.D.); (M.T.T.); (T.T.H.); (C.C.N.); (A.J.); (E.N.); (N.H.L.)
| | - James Davies
- Graduate School of Biomedical Engineering, Faculty of Engineering, UNSW Sydney, Kensington Campus, Sydney, NSW 2052, Australia; (K.Z.); (B.S.); (J.D.); (M.T.T.); (T.T.H.); (C.C.N.); (A.J.); (E.N.); (N.H.L.)
| | - Mai Thanh Thai
- Graduate School of Biomedical Engineering, Faculty of Engineering, UNSW Sydney, Kensington Campus, Sydney, NSW 2052, Australia; (K.Z.); (B.S.); (J.D.); (M.T.T.); (T.T.H.); (C.C.N.); (A.J.); (E.N.); (N.H.L.)
- College of Engineering and Computer Science, VinUniversity, Hanoi 100000, Vietnam
| | - Trung Thien Hoang
- Graduate School of Biomedical Engineering, Faculty of Engineering, UNSW Sydney, Kensington Campus, Sydney, NSW 2052, Australia; (K.Z.); (B.S.); (J.D.); (M.T.T.); (T.T.H.); (C.C.N.); (A.J.); (E.N.); (N.H.L.)
| | - Chi Cong Nguyen
- Graduate School of Biomedical Engineering, Faculty of Engineering, UNSW Sydney, Kensington Campus, Sydney, NSW 2052, Australia; (K.Z.); (B.S.); (J.D.); (M.T.T.); (T.T.H.); (C.C.N.); (A.J.); (E.N.); (N.H.L.)
| | - Adrienne Ji
- Graduate School of Biomedical Engineering, Faculty of Engineering, UNSW Sydney, Kensington Campus, Sydney, NSW 2052, Australia; (K.Z.); (B.S.); (J.D.); (M.T.T.); (T.T.H.); (C.C.N.); (A.J.); (E.N.); (N.H.L.)
| | - Emanuele Nicotra
- Graduate School of Biomedical Engineering, Faculty of Engineering, UNSW Sydney, Kensington Campus, Sydney, NSW 2052, Australia; (K.Z.); (B.S.); (J.D.); (M.T.T.); (T.T.H.); (C.C.N.); (A.J.); (E.N.); (N.H.L.)
| | - Hung Manh La
- Advanced Robotics and Automation Lab, Computer Science and Engineering, University of Nevada, Reno, NV 89512, USA;
| | - Tat Thang Vo-Doan
- School of Mechanical & Mining Engineering, The University of Queensland, St. Lucia, QLD 4072, Australia;
| | - Hoang-Phuong Phan
- School of Mechanical and Manufacturing Engineering, Faculty of Engineering, UNSW Sydney, Kensington Campus, Sydney, NSW 2052, Australia;
- Tyree Foundation Institute of Health Engineering (IHealthE), UNSW Sydney, Sydney, NSW 2052, Australia
| | - Nigel H. Lovell
- Graduate School of Biomedical Engineering, Faculty of Engineering, UNSW Sydney, Kensington Campus, Sydney, NSW 2052, Australia; (K.Z.); (B.S.); (J.D.); (M.T.T.); (T.T.H.); (C.C.N.); (A.J.); (E.N.); (N.H.L.)
- Tyree Foundation Institute of Health Engineering (IHealthE), UNSW Sydney, Sydney, NSW 2052, Australia
| | - Thanh Nho Do
- Graduate School of Biomedical Engineering, Faculty of Engineering, UNSW Sydney, Kensington Campus, Sydney, NSW 2052, Australia; (K.Z.); (B.S.); (J.D.); (M.T.T.); (T.T.H.); (C.C.N.); (A.J.); (E.N.); (N.H.L.)
- Tyree Foundation Institute of Health Engineering (IHealthE), UNSW Sydney, Sydney, NSW 2052, Australia
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Almasri RM, Ladouceur F, Mawad D, Esrafilzadeh D, Firth J, Lehmann T, Poole-Warren LA, Lovell NH, Al Abed A. Emerging trends in the development of flexible optrode arrays for electrophysiology. APL Bioeng 2023; 7:031503. [PMID: 37692375 PMCID: PMC10491464 DOI: 10.1063/5.0153753] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Accepted: 08/08/2023] [Indexed: 09/12/2023] Open
Abstract
Optical-electrode (optrode) arrays use light to modulate excitable biological tissues and/or transduce bioelectrical signals into the optical domain. Light offers several advantages over electrical wiring, including the ability to encode multiple data channels within a single beam. This approach is at the forefront of innovation aimed at increasing spatial resolution and channel count in multichannel electrophysiology systems. This review presents an overview of devices and material systems that utilize light for electrophysiology recording and stimulation. The work focuses on the current and emerging methods and their applications, and provides a detailed discussion of the design and fabrication of flexible arrayed devices. Optrode arrays feature components non-existent in conventional multi-electrode arrays, such as waveguides, optical circuitry, light-emitting diodes, and optoelectronic and light-sensitive functional materials, packaged in planar, penetrating, or endoscopic forms. Often these are combined with dielectric and conductive structures and, less frequently, with multi-functional sensors. While creating flexible optrode arrays is feasible and necessary to minimize tissue-device mechanical mismatch, key factors must be considered for regulatory approval and clinical use. These include the biocompatibility of optical and photonic components. Additionally, material selection should match the operating wavelength of the specific electrophysiology application, minimizing light scattering and optical losses under physiologically induced stresses and strains. Flexible and soft variants of traditionally rigid photonic circuitry for passive optical multiplexing should be developed to advance the field. We evaluate fabrication techniques against these requirements. We foresee a future whereby established telecommunications techniques are engineered into flexible optrode arrays to enable unprecedented large-scale high-resolution electrophysiology systems.
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Affiliation(s)
- Reem M. Almasri
- Graduate School of Biomedical Engineering, UNSW, Sydney, NSW 2052, Australia
| | | | - Damia Mawad
- School of Materials Science and Engineering, UNSW, Sydney, NSW 2052, Australia
| | - Dorna Esrafilzadeh
- Graduate School of Biomedical Engineering, UNSW, Sydney, NSW 2052, Australia
| | - Josiah Firth
- Australian National Fabrication Facility, UNSW, Sydney, NSW 2052, Australia
| | - Torsten Lehmann
- School of Electrical Engineering and Telecommunications, UNSW, Sydney, NSW 2052, Australia
| | | | | | - Amr Al Abed
- Graduate School of Biomedical Engineering, UNSW, Sydney, NSW 2052, Australia
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Cardona M, Lewis ET, Bannach-Brown A, Ip G, Tan J, Koreshe E, Head J, Lee JJ, Rangel S, Bublitz L, Forbes C, Murray A, Marechal-Ross I, Bathla N, Kusnadi R, Brown PG, Alkhouri H, Ticehurst M, Lovell NH. Development and preliminary usability testing of an electronic conversation guide incorporating patient values and prognostic information in preparation for older people's decision-making near the end of life. Internet Interv 2023; 33:100643. [PMID: 37521519 PMCID: PMC10382674 DOI: 10.1016/j.invent.2023.100643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Revised: 05/21/2023] [Accepted: 06/30/2023] [Indexed: 08/01/2023] Open
Abstract
Initiating end-of-life conversations can be daunting for clinicians and overwhelming for patients and families. This leads to delays in communicating prognosis and preparing for the inevitable in old age, often generating potentially harmful overtreatment and poor-quality deaths. We aimed to develop an electronic resource, called Communicating Health Alternatives Tool (CHAT) that was compatible with hospital medical records software to facilitate preparation for shared decision-making across health settings with older adults deemed to be in the last year of life. The project used mixed methods including: literature review, user-directed specifications, web-based interface development with authentication and authorization; clinician and consumer co-design, iterative consultation for user testing; and ongoing developer integration of user feedback. An internet-based conversation guide to facilitate clinician-led advance care planning was co-developed covering screening for short-term risk of death, patient values and preferences, and treatment choices for chronic kidney disease and dementia. Printed summary of such discussion could be used to begin the process in hospital or community health services. Clinicians, patients, and caregivers agreed with its ease of use and were generally accepting of its contents and format. CHAT is available to health services for implementation in effectiveness trials to determine whether the interaction and documentation leads to formal decision-making, goal-concordant care, and subsequent reduction of unwanted treatments at the end of life.
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Affiliation(s)
- Magnolia Cardona
- Graduate School of Biomedical Engineering, University of New South Wales, Sydney, Australia
- Institute for Evidence-Based Healthcare, Bond University, Robina, Australia
- Gold Coast Hospital and Health Service, Professorial Unit, Southport, Australia
| | - Ebony T. Lewis
- School of Population Health, Faculty of Medicine & Health, University of New South Wales, Sydney, Australia
- School of Psychology, Faculty of Science, University of New South Wales, Sydney, NSW, Australia
| | - Alex Bannach-Brown
- Institute for Evidence-Based Healthcare, Bond University, Robina, Australia
| | - Genevieve Ip
- School of Population Health, Faculty of Medicine & Health, University of New South Wales, Sydney, Australia
| | - Janice Tan
- School of Population Health, Faculty of Medicine & Health, University of New South Wales, Sydney, Australia
| | - Eyza Koreshe
- InsideOut Institute, Faculty of Medicine & Health, The University of Sydney, Camperdown, Australia
| | - Joshua Head
- Graduate School of Biomedical Engineering, University of New South Wales, Sydney, Australia
| | - Jin Jie Lee
- Graduate School of Biomedical Engineering, University of New South Wales, Sydney, Australia
| | - Shirley Rangel
- Gold Coast Hospital and Health Service, Professorial Unit, Southport, Australia
| | - Lorraine Bublitz
- Gold Coast Hospital and Health Service, Professorial Unit, Southport, Australia
| | - Connor Forbes
- Institute for Evidence-Based Healthcare, Bond University, Robina, Australia
| | - Amanda Murray
- Institute for Evidence-Based Healthcare, Bond University, Robina, Australia
| | - Isabella Marechal-Ross
- Northern Clinical School, Sydney Medical School, Faculty of Medicine and Health, University of Sydney, Sydney, Australia
| | - Nikita Bathla
- School of Population Health, Faculty of Medicine & Health, University of New South Wales, Sydney, Australia
| | - Ruth Kusnadi
- School of Population Health, Faculty of Medicine & Health, University of New South Wales, Sydney, Australia
| | - Peter G. Brown
- Graduate School of Biomedical Engineering, University of New South Wales, Sydney, Australia
| | - Hatem Alkhouri
- Agency for Clinical Innovation, Emergency Care Institute, Chatswood, Australia
| | - Maree Ticehurst
- School of Population Health, Faculty of Medicine & Health, University of New South Wales, Sydney, Australia
- Mark Moran Aged Care, Little Bay, New South Wales, Australia
| | - Nigel H. Lovell
- Graduate School of Biomedical Engineering, University of New South Wales, Sydney, Australia
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10
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Xie Y, Qin P, Guo T, Al Abed A, Lovell NH, Tsai D. Modulating individual axons and axonal populations in the peripheral nerve using transverse intrafascicular multichannel electrodes. J Neural Eng 2023; 20:046032. [PMID: 37536318 DOI: 10.1088/1741-2552/aced20] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Accepted: 08/03/2023] [Indexed: 08/05/2023]
Abstract
Objective.A transverse intrafascicular multichannel electrode (TIME) may offer advantages over more conventional cuff electrodes including higher spatial selectivity and reduced stimulation charge requirements. However, the performance of TIME, especially in the context of non-conventional stimulation waveforms, remains relatively unexplored. As part of our overarching goal of investigating stimulation efficacy of TIME, we developed a computational toolkit that automates the creation and usage ofin siliconerve models with TIME setup, which solves nerve responses using cable equations and computes extracellular potentials using finite element method.Approach.We began by implementing a flexible and scalable Python/MATLAB-based toolkit for automatically creating models of nerve stimulation in the hybrid NEURON/COMSOL ecosystems. We then developed a sciatic nerve model containing 14 fascicles with 1,170 myelinated (A-type, 30%) and unmyelinated (C-type, 70%) fibers to study fiber responses over a variety of TIME arrangements (monopolar and hexapolar) and stimulation waveforms (kilohertz stimulation and cathodic ramp modulation).Main results.Our toolkit obviates the conventional need to re-create the same nerve in two disparate modeling environments and automates bi-directional transfer of results. Our population-based simulations suggested that kilohertz stimuli provide selective activation of targeted C fibers near the stimulating electrodes but also tended to activate non-targeted A fibers further away. However, C fiber selectivity can be enhanced by hexapolar TIME arrangements that confined the spatial extent of electrical stimuli. Improved upon prior findings, we devised a high-frequency waveform that incorporates cathodic DC ramp to completely remove undesirable onset responses.Conclusion.Our toolkit allows agile, iterative design cycles involving the nerve and TIME, while minimizing the potential operator errors during complex simulation. The nerve model created by our toolkit allowed us to study and optimize the design of next-generation intrafascicular implants for improved spatial and fiber-type selectivity.
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Affiliation(s)
- Yuyang Xie
- Graduate School of Biomedical Engineering, UNSW Sydney, NSW 2052, Australia
| | - Peijun Qin
- Graduate School of Biomedical Engineering, UNSW Sydney, NSW 2052, Australia
| | - Tianruo Guo
- Graduate School of Biomedical Engineering, UNSW Sydney, NSW 2052, Australia
| | - Amr Al Abed
- Graduate School of Biomedical Engineering, UNSW Sydney, NSW 2052, Australia
| | - Nigel H Lovell
- Graduate School of Biomedical Engineering, UNSW Sydney, NSW 2052, Australia
- Tyree Institute of Health Engineering (IHealthE), UNSW Sydney, NSW 2052, Australia
| | - David Tsai
- Graduate School of Biomedical Engineering, UNSW Sydney, NSW 2052, Australia
- School of Electrical Engineering & Telecommunications, UNSW Sydney, NSW 2052, Australia
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11
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Ghamsari R, Rosenbluh J, Menon AV, Lovell NH, Alinejad-Rokny H. Technological Convergence: Highlighting the Power of CRISPR Single-Cell Perturbation Toolkit for Functional Interrogation of Enhancers. Cancers (Basel) 2023; 15:3566. [PMID: 37509229 PMCID: PMC10377346 DOI: 10.3390/cancers15143566] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Revised: 06/30/2023] [Accepted: 07/03/2023] [Indexed: 07/30/2023] Open
Abstract
Higher eukaryotic enhancers, as a major class of regulatory elements, play a crucial role in the regulation of gene expression. Over the last decade, the development of sequencing technologies has flooded researchers with transcriptome-phenotype data alongside emerging candidate regulatory elements. Since most methods can only provide hints about enhancer function, there have been attempts to develop experimental and computational approaches that can bridge the gap in the causal relationship between regulatory regions and phenotypes. The coupling of two state-of-the-art technologies, also referred to as crisprQTL, has emerged as a promising high-throughput toolkit for addressing this question. This review provides an overview of the importance of studying enhancers, the core molecular foundation of crisprQTL, and recent studies utilizing crisprQTL to interrogate enhancer-phenotype correlations. Additionally, we discuss computational methods currently employed for crisprQTL data analysis. We conclude by pointing out common challenges, making recommendations, and looking at future prospects, with the aim of providing researchers with an overview of crisprQTL as an important toolkit for studying enhancers.
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Affiliation(s)
- Reza Ghamsari
- BioMedical Machine Learning Lab (BML), The Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, NSW 2052, Australia
- Epigenetics and Development Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC 3052, Australia
| | - Joseph Rosenbluh
- Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Melbourne, VIC 3800, Australia
| | - A Vipin Menon
- Epigenetics and Development Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC 3052, Australia
| | - Nigel H Lovell
- The Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, NSW 2052, Australia
- Tyree Institute of Health Engineering (IHealthE), UNSW Sydney, Sydney, NSW 2052, Australia
| | - Hamid Alinejad-Rokny
- BioMedical Machine Learning Lab (BML), The Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, NSW 2052, Australia
- UNSW Data Science Hub, UNSW Sydney, Sydney, NSW 2052, Australia
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12
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Woods A, Nguyen CC, Islam MSU, Lovell NH, Nho Do T, Tsai D. Towards a single-use, low-cost endoscope for gastroenterological diagnostics. Annu Int Conf IEEE Eng Med Biol Soc 2023; 2023:1-4. [PMID: 38083612 DOI: 10.1109/embc40787.2023.10341003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
Early diagnosis and treatment of diseases in the gastrointestinal (GI) tract including colorectal cancers (CRC) via natural orifices have led to a significant increase in patient survival rates. Most screening procedures utilize image-guided techniques via a conventional endoscope. The cost of conventional endoscopes is substantial, ranging in the tens of thousands of USD or more. This presents significant burden for developing countries, which are disproportionally affected by gastroenterological diseases. Conventional endoscopes also require sterilization between use. This increases the chance of cross-infection between patients. To address these problems, this paper introduces a soft endoscope with a disposable insertion tube that can be articulated. This prototype device is hydraulically actuated, capable of a 10 mm bend radius and 180-degree bend angle. The camera system provides 110 degrees field-of-view. The component parts of this disposable endoscope costs less than 200 USD.Clinical relevance-Our low-cost, single-use endoscope eliminates the sterilization step required by conventional systems, thereby reducing the risks of infection and lowering the operating costs. There is also significant scope for our device to be used beyond the human GI track, such as screening for lung or bladder cancers. Given the compact footprint, the minimal cost of the disposable parts, the proposed platform can widen cancer screening programs with quantifiable economic benefit for many patients, particularly those in developing countries.
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13
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Ly K, Lovell NH, Muralidharan M, Italiano ML, Tsai D, Shivdasani MN, Guo T, Dokos S. The direct influence of retinal degeneration on electrical stimulation efficacy: Significant implications for retinal prostheses. Annu Int Conf IEEE Eng Med Biol Soc 2023; 2023:1-4. [PMID: 38083376 DOI: 10.1109/embc40787.2023.10340724] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
Photoreceptor loss and inner retinal network remodeling severely impacts the ability of retinal prosthetic devices to create artificial vision. We developed a computational model of a degenerating retina based on rodent data and tested its response to retinal electrical stimulation. This model includes detailed network connectivity and diverse neural intrinsic properties, capable of exploring how the degenerated retina influences the performance of electrical stimulation during the degeneration process. Our model suggests the possibility of quantitatively modulating retinal ON and OFF pathways between phase II and III of retinal degeneration without requiring any differences between ON and OFF RGC intrinsic cellular properties. The model also provided insights about how remodeling events influence stage-dependent differential electrical responses of ON and OFF pathways.Clinical Relevance-This data-driven model can guide future development of retinal prostheses and stimulation strategies that may benefit patients at different stages of retinal disease progression, particularly in the early and mid-stages, thus increasing their global acceptance.
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14
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Reynisson H, Nivison-Smith L, Lovell NH, Kalloniatis M, Shivdasani MN. Development of a rabbit model of Adenosine triphosphate-induced monocular retinal degeneration for optimization of retinal prostheses. Annu Int Conf IEEE Eng Med Biol Soc 2023; 2023:1-4. [PMID: 38083330 DOI: 10.1109/embc40787.2023.10340920] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
Optimization of retinal prostheses requires preclinical animal models that mimic features of human retinal disease, have appropriate eye sizes to accommodate implantable arrays, and provide options for unilateral degeneration so as to enable a contralateral, within-animal control eye. In absence of a suitable non-human primate model and shortcomings of our previous feline model generated through intravitreal injections of Adenosine Triphosphate (ATP), we aimed in the present study to develop an ATP induced degeneration model in the rabbit. Six normally sighted Dutch rabbits were monocularly blinded with this technique. Subsequent retinal degeneration was assessed with optical coherence tomography, electroretinography, and histological assays. Overall, there was a 42% and 26% reduction in a-wave and oscillatory potential amplitudes in the electroretinograms respectively, along with a global decrease in retinal thickness, with increased variability. Qualitative inspection also revealed that there were variable levels of retinal degeneration and remodeling both within and between treated eyes, mimicking the disease heterogeneity observed in retinitis pigmentosa. These findings confirm that ATP can be utilized to unilaterally induce blinding in rabbits and, potentially present an ideal model for future cortical recording experiments aimed at optimizing vision restoration strategies.Clinical Relevance- A rapid, unilaterally induced model of retinal degeneration in an animal with low binocular overlap and large eyes will allow for clinically valid recordings of downstream cortical activity following retinal stimulation. Such a model would be highly beneficial for the optimization of clinically appropriate vision restoration approaches.
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15
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Qin P, Lin Q, Xie Y, Chang YC, Zanos S, Wang H, Payne S, Shivdasani MN, Tsai D, Lovell NH, Dokos S, Guo T. Modulating functionally-distinct vagus nerve fibers using microelectrodes and kilohertz frequency electrical stimulation. Annu Int Conf IEEE Eng Med Biol Soc 2023; 2023:1-4. [PMID: 38082599 DOI: 10.1109/embc40787.2023.10340796] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
Modulation of functionally distinct nerve fibers with bioelectronic devices provides a therapeutic opportunity for various diseases. In this study, we began by developing a computational model including four major subtypes of myelinated fibers and one unmyelinated fiber. Second, we used an intrafascicular electrode to perform kHz-frequency electric stimulation to preferentially modulate a population of fibers. Our model suggests that fiber physical properties and electrode-to-fascicle distance severely impacts stimulus-response relationships. Large diameter fibers (Aα- and Aβ-) were only minimally influenced by the fascicle size and electrode location, while smaller diameter fibers (Aδ-, B- and C-) indicated a stronger dependency.Clinical Relevance- Our findings support the possibility of selectively modulating functionally-distinct nerve fibers using electrical stimulation in a small, localized region. Our model provides an effective tool to design next-generation implantable devices and therapeutic stimulation strategies toward minimizing off-target effects.
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16
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Brodie MA, Pelicioni PH, Okubo Y, Chan DY, Carroll V, Toson B, Vigano D, Macagno M, Sternberg S, Schreier G, Lovell NH. Immediate Effects of Lower Limb Sensory Simulation Using Smart Socks to Stabilize Gait in People with Parkinson's Disease. Annu Int Conf IEEE Eng Med Biol Soc 2023; 2023:1-4. [PMID: 38083091 DOI: 10.1109/embc40787.2023.10340604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
People with Parkinson's disease (PD) experience gait impairment that can lead to falls and poor quality of life. Here we investigate the feasibility of using smart socks to stimulate the lower limbs of people with PD to reduce excessive step time variability during walking. We hypothesised that rythmic excitation of lower limb afferents, matched to a participant's comfortable pace, would entrain deficient neuro-muscular signals resulting in improved gait. Five people with mild to moderate PD symptoms (70 ± 9 years) were tested on medication before and after a 30-minute familierization session. Paired t-tests and Cohen's d were used to assess gait changes and report effect sizes. Participant experiences were recorded through structured interviews. Lower limb stimulation resulted in an acute 15% increase in gait speed (p=0.006, d=0.62), an 11% increase in step length (p=0.04, d=0.35), a 44% reduction in step time variability (p=0.03, d=0.91), a 22% increase in perceived gait quality (p=0.04, d=1.17), a 24% reduction in mental effort to walk (p=0.02, d=0.79) and no statistical difference for cadence (p=0.16). Participants commented positively on the benefit of stimulation during training but found that stimulation could be distracting when not walking and the socks hard to put on. While the large effects for step time variability and percieved gait quality (Cohen's d > 0.8) are promising, limitations regarding sample size, potential placebo effects and translation to the home environment should be addressed by future studies.Clinical Relevance- This study demonstrates the feasibility of using smart stimulating socks to reduce excessive step time variability in people with PD. As step time variability is a risk factor for falls, the use of smart textiles to augment future rehabilitation programs warrants further investigation.
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17
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Argha A, Li J, Magdy J, Alinejad-Rokny H, Celler BG, Butcher K, Ooi SY, Lovell NH. Assessing the Generalizability of a Deep Learning-based Automated Atrial Fibrillation Algorithm. Annu Int Conf IEEE Eng Med Biol Soc 2023; 2023:1-6. [PMID: 38082750 DOI: 10.1109/embc40787.2023.10341108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
Automated detection of atrial fibrillation (AF) from electrocardiogram (ECG) traces remains a challenging task and is crucial for telemonitoring of patients after stroke. This study aimed to quantify the generalizability of a deep learning (DL)-based automated ECG classification algorithm. We first developed a novel hybrid DL (HDL) model using the PhysioNet/CinC Challenge 2017 (CinC2017) dataset (publicly available) that can classify the ECG recordings as one of four classes: normal sinus rhythm (NSR), AF, other rhythms (OR), and too noisy (TN) recordings. The (pre)trained HDL was then used to classify 636 ECG samples collected by our research team using a handheld ECG device, CONTEC PM10 Portable ECG Monitor, from 102 (age: 68 ± 15 years, 74 male) outpatients of the Eastern Heart Clinic and inpatients in the Cardiology ward of Prince of Wales Hospital, Sydney, Australia. The proposed HDL model achieved average test F1-score of 0.892 for NSR, AF, and OR, relative to the reference values, on the CinC2017 dataset. The HDL model also achieved an average F1-score of 0.722 (AF: 0.905, NSR: 0.791, OR: 0.471 and TN: 0.342) on the dataset created by our research team. After retraining the HDL model on this dataset using a 5-fold cross validation method, the average F1-score increased to 0.961. We finally conclude that the generalizability of the HDL-based algorithm developed for AF detection from short-term single-lead ECG traces is acceptable. However, the accuracy of the pre-trained DL model was significantly improved by retraining the model parameters on the new dataset of ECG traces.
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18
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Zha M, Muralidharan M, Ly K, Guo T, Von Wegner F, Shabani H, Hosseinzadeh Z, Lovell NH, Rathbun DL, Shivdasani MN. Probing the Contribution of Vertical Processing Layers of the Retina to White-Noise Electrical Stimulation Responses. Annu Int Conf IEEE Eng Med Biol Soc 2023; 2023:1-4. [PMID: 38083111 DOI: 10.1109/embc40787.2023.10340816] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
Optimal stimulus parameters for epiretinal prostheses have been investigated by analyzing retinal ganglion cell (RGC) spiking responses to white-noise electrical stimulation, through a spike-triggered average (STA) analysis technique. However, it is currently unknown as to activation of which retinal cells contribute to features of the STA. We conducted whole-cell patch clamping recordings in ON and OFF RGCs in response to white-noise epiretinal electrical stimulation by using different inhibitors of synaptic transmission in a healthy retina. An mGluR6 agonist, L-AP4, was firstly used to selectively block the output of photoreceptors (PRs) to ON bipolar cells (BCs). We subsequently fully blocked all synaptic inputs to RGCs using a combination of pharmacological agents. Our data shows that PRs dominate the ability of ON RGCs to integrate electrical pulses and form a unique STA shape, while BCs do not contribute in any way. In addition, our results demonstrate that the ability of OFF RGCs to integrate pulses is consistently impaired after blocking the PR to ON BC pathway. We hypothesise that the mechanisms underlying this co-effect are related to the narrow field AII amacrine cells connecting ON and OFF pathways.Clinical Relevance-Recent retinal studies recorded mirror-inverted STAs in ON and OFF retinal pathways, thus raising the possibility of designing a stimulation approach that can differentially activate ON and OFF pathways with electrical stimulation. However, the detailed contribution of three major retinal cell layers in forming characteristic STAs is still unclear. It is of great clinical relevance to investigate the isolated contribution of PRs to the electrically driven STA since PRs progressively degenerate in the course of retinal disease.
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19
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Ooi JH, Goh CH, Tan MP, Argha R, Beh HC, Lovell NH, Lim E. Differences in Cardiovascular Regulation to Head-up Tilt between Healthy and Hypertensive Subjects. Annu Int Conf IEEE Eng Med Biol Soc 2023; 2023:1-4. [PMID: 38083751 DOI: 10.1109/embc40787.2023.10340153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
To date there have only been limited studies exploring abnormal hemodynamic responses to head-up tilt tests (HUTs) in elderly, treated patients with hypertension. Cardiovascular regulation in response to HUT as well as upright hemodynamics may be altered when older hypertensive patients with antihypertensive treatments are studied. Hypertensive patients with and without receiving antihypertensive medication and above the age of 45 were recruited in this study. This study compared the cardiovascular responses to HUT and at rest between healthy and hypertensives using non-invasive hemodynamic measurements. Parameters such as systolic blood pressure (SBP), diastolic blood pressure (DBP), heart rate (HR), stroke index (SI) and total peripheral resistance index (TPRI) were measured in 40 subjects (20 healthy and 20 hypertensives) for 10-min supine baseline, 10-min HUT at 70◦ and 6-min supine recovery. At rest and during HUT, SBP and TPRI were significantly higher in hypertensives together with a significantly smaller baseline SI. In response to HUT, both groups showed changes in hemodynamic parameters at differing degrees. During recovery, all parameters returned to the baseline range. Our findings indicated that hypertensive patients of older age being treated by antihypertensive drugs may have different cardiovascular changes in response to orthostatic stress.Clinical Relevance- This pilot study describes how cardiovascular regulation in response to postural change may behave differently in hypertensive elder patients taking antihypertensive drugs.
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20
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Boss LA, Lovell NH, Stevens MC. Evaluating Indices for Non-invasive Myocardial Recovery Assessment in LVAD-Supported Heart Failure Patients. Annu Int Conf IEEE Eng Med Biol Soc 2023; 2023:1-4. [PMID: 38082936 DOI: 10.1109/embc40787.2023.10339995] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
Accurate assessment of myocardial recovery (MR) under left ventricular assist device (LVAD) support is essential for clinicians to manage heart failure patients. However, current techniques for assessing MR are time-consuming, invasive, and infrequent. Measuring MR using indices derived from LVAD operating data instead provides a potential real-time alternative. Several of these indices for assessing the MR of LVAD-supported heart failure patients were collated from the literature and subject to a comprehensive comparative analysis. The objective of this analysis was to determine the most accurate index for assessing systolic cardiac function under LVAD-support, characterized by maximal end-systolic elastance (Emax), while remaining insensitive to preload & afterload. The indices were compared in computational simulation, utilizing an LVAD + cardiovascular system model to sweep through a large array of Emax and resistance conditions. Results demonstrated the index that correlated best with Emax, showing the highest accuracy, was the ratio between maximum flow acceleration and flow pulsatility (average R2 =0.9790). The same index also exhibited the lowest % variation (sensitivity) to preload & afterload (1.32% & 13.53% respectively). However, opportunities for improvement remain among current recovery assessment indices, with this study providing a baseline of performance for potential future indices to improve upon.Clinical relevance- This study presents a potential real-time measure of native cardiac function in LVAD-supported heart failure patients to support patient management and further recovery.
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21
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Hasmat S, Lovell NH, Low THH, Clark JR. Development of an implantable bionic for dynamic eye closure in facial nerve paralysis: Evolution of the design. Med Eng Phys 2023; 115:103977. [PMID: 37120171 DOI: 10.1016/j.medengphy.2023.103977] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2022] [Revised: 01/03/2023] [Accepted: 04/06/2023] [Indexed: 05/01/2023]
Abstract
Facial nerve paralysis (FNP) presents with a constellation of clinical problems but its most concerning consequence is corneal exposure from lack of blinking. Bionic lid implant for natural closure (BLINC) is an implantable solution for dynamic eye closure in FNP. It uses an electromagnetic actuator to mobilise the dysfunctional eyelid by means of an eyelid sling. This study highlights issues relating to device biocompatibility and describes its evolution to overcome some of these issues. The essential components of the device are the actuator, the electronics including energy storage, and an induction link for wireless power transfer. Effective arrangement of these components within the anatomical confines and their integration is achieved through a series of prototypes. The response of each prototype is tested in a synthetic or cadaveric model for eye closure with the final prototype designed for acute and chronic animal trials.
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Affiliation(s)
- Shaheen Hasmat
- Faculty of Medicine and Health, the University of Sydney, Camperdown, NSW 2006, Australia; Department of Head and Neck Surgery, Chris O'Brien Lifehouse, Camperdown, NSW 2050, Australia.
| | - Nigel H Lovell
- Graduate School of Biomedical Engineering, UNSW Sydney, NSW 2052, Australia
| | - Tsu-Hui Hubert Low
- Faculty of Medicine and Health, the University of Sydney, Camperdown, NSW 2006, Australia; Department of Head and Neck Surgery, Chris O'Brien Lifehouse, Camperdown, NSW 2050, Australia
| | - Jonathan R Clark
- Faculty of Medicine and Health, the University of Sydney, Camperdown, NSW 2006, Australia; Department of Head and Neck Surgery, Chris O'Brien Lifehouse, Camperdown, NSW 2050, Australia
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22
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Ly K, Guo T, Tsai D, Muralidharan M, Shivdasani MN, Lovell NH, Dokos S. Simulating the impact of photoreceptor loss and inner retinal network changes on electrical activity of the retina. J Neural Eng 2022; 19. [PMID: 36368033 DOI: 10.1088/1741-2552/aca221] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Accepted: 11/11/2022] [Indexed: 11/13/2022]
Abstract
Objective.A major reason for poor visual outcomes provided by existing retinal prostheses is the limited knowledge of the impact of photoreceptor loss on retinal remodelling and its subsequent impact on neural responses to electrical stimulation. Computational network models of the neural retina assist in the understanding of normal retinal function but can be also useful for investigating diseased retinal responses to electrical stimulation.Approach.We developed and validated a biophysically detailed discrete neuronal network model of the retina in the software package NEURON. The model includes rod and cone photoreceptors, ON and OFF bipolar cell pathways, amacrine and horizontal cells and finally, ON and OFF retinal ganglion cells with detailed network connectivity and neural intrinsic properties. By accurately controlling the network parameters, we simulated the impact of varying levels of degeneration on retinal electrical function.Main results.Our model was able to reproduce characteristic monophasic and biphasic oscillatory patterns seen in ON and OFF neurons during retinal degeneration (RD). Oscillatory activity occurred at 3 Hz with partial photoreceptor loss and at 6 Hz when all photoreceptor input to the retina was removed. Oscillations were found to gradually weaken, then disappear when synapses and gap junctions were destroyed in the inner retina. Without requiring any changes to intrinsic cellular properties of individual inner retinal neurons, our results suggest that changes in connectivity alone were sufficient to give rise to neural oscillations during photoreceptor degeneration, and significant network connectivity destruction in the inner retina terminated the oscillations.Significance.Our results provide a platform for further understanding physiological retinal changes with progressive photoreceptor and inner RD. Furthermore, our model can be used to guide future stimulation strategies for retinal prostheses to benefit patients at different stages of disease progression, particularly in the early and mid-stages of RD.
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Affiliation(s)
- Keith Ly
- Graduate School of Biomedical Engineering, UNSW, Sydney, NSW, 2052, Australia
| | - Tianruo Guo
- Graduate School of Biomedical Engineering, UNSW, Sydney, NSW, 2052, Australia
| | - David Tsai
- Graduate School of Biomedical Engineering, UNSW, Sydney, NSW, 2052, Australia.,School of Electrical Engineering & Telecommunications, UNSW, Sydney, NSW 2052, Australia
| | | | - Mohit N Shivdasani
- Graduate School of Biomedical Engineering, UNSW, Sydney, NSW, 2052, Australia
| | - Nigel H Lovell
- Graduate School of Biomedical Engineering, UNSW, Sydney, NSW, 2052, Australia.,Tyree Institute of Health Engineering (IHealthE), UNSW, Sydney, NSW 2052, Australia
| | - Socrates Dokos
- Graduate School of Biomedical Engineering, UNSW, Sydney, NSW, 2052, Australia
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23
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Labani M, Beheshti A, Lovell NH, Alinejad-Rokny H, Afrasiabi A. KARAJ: An Efficient Adaptive Multi-Processor Tool to Streamline Genomic and Transcriptomic Sequence Data Acquisition. Int J Mol Sci 2022; 23:ijms232214418. [PMID: 36430895 PMCID: PMC9694301 DOI: 10.3390/ijms232214418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2022] [Revised: 11/15/2022] [Accepted: 11/17/2022] [Indexed: 11/22/2022] Open
Abstract
Here we developed KARAJ, a fast and flexible Linux command-line tool to automate the end-to-end process of querying and downloading a wide range of genomic and transcriptomic sequence data types. The input to KARAJ is a list of PMCIDs or publication URLs or various types of accession numbers to automate four tasks as follows; firstly, it provides a summary list of accessible datasets generated by or used in these scientific articles, enabling users to select appropriate datasets; secondly, KARAJ calculates the size of files that users want to download and confirms the availability of adequate space on the local disk; thirdly, it generates a metadata table containing sample information and the experimental design of the corresponding study; and lastly, it enables users to download supplementary data tables attached to publications. Further, KARAJ provides a parallel downloading framework powered by Aspera connect which reduces the downloading time significantly.
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Affiliation(s)
- Mahdieh Labani
- Biomedical Machine Learning Lab, The Graduate School of Biomedical Engineering, University of New South Wales (UNSW), Sydney, NSW 2052, Australia
- Data Analytics Lab, Department of Computing, Macquarie University, Sydney, NSW 2109, Australia
| | - Amin Beheshti
- Data Analytics Lab, Department of Computing, Macquarie University, Sydney, NSW 2109, Australia
| | - Nigel H Lovell
- The Graduate School of Biomedical Engineering (GSBmE), University of New South Wales (UNSW), Sydney, NSW 2052, Australia
- Tyree Institute of Health Engineering (IHealthE), University of New South Wales (UNSW), Sydney, NSW 2052, Australia
| | - Hamid Alinejad-Rokny
- Biomedical Machine Learning Lab, The Graduate School of Biomedical Engineering, University of New South Wales (UNSW), Sydney, NSW 2052, Australia
- UNSW Data Science Hub, University of New South Wales (UNSW), Sydney, NSW 2052, Australia
- Health Data Analytics Program, Centre for Applied Artificial Intelligence, Macquarie University, Sydney, NSW 2109, Australia
| | - Ali Afrasiabi
- Biomedical Machine Learning Lab, The Graduate School of Biomedical Engineering, University of New South Wales (UNSW), Sydney, NSW 2052, Australia
- Centre for Immunology and Allergy Research, Westmead Institute for Medical Research, University of Sydney, Sydney, NSW 2006, Australia
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Al Abed A, Wei Y, Almasri RM, Lei X, Wang H, Firth J, Chen Y, Gouailhardou N, Silvestri L, Lehmann T, Ladouceur F, Lovell NH. Liquid crystal electro-optical transducers for electrophysiology sensing applications. J Neural Eng 2022; 19. [DOI: 10.1088/1741-2552/ac8ed6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Accepted: 09/01/2022] [Indexed: 11/06/2022]
Abstract
Abstract
Objective. Biomedical instrumentation and clinical systems for electrophysiology rely on electrodes and wires for sensing and transmission of bioelectric signals. However, this electronic approach constrains bandwidth, signal conditioning circuit designs, and the number of channels in invasive or miniature devices. This paper demonstrates an alternative approach using light to sense and transmit the electrophysiological signals. Approach. We develop a sensing, passive, fluorophore-free optrode based on the birefringence property of liquid crystals (LCs) operating at the microscale. Main results. We show that these optrodes can have the appropriate linearity (µ ± s.d.: 99.4 ± 0.5%, n = 11 devices), relative responsivity (µ ± s.d.: 57 ± 12%V−1, n = 5 devices), and bandwidth (µ ± s.d.: 11.1 ± 0.7 kHz, n = 7 devices) for transducing electrophysiology signals into the optical domain. We report capture of rabbit cardiac sinoatrial electrograms and stimulus-evoked compound action potentials from the rabbit sciatic nerve. We also demonstrate miniaturisation potential by fabricating multi-optrode arrays, by developing a process that automatically matches each transducer element area with that of its corresponding biological interface. Significance. Our method of employing LCs to convert bioelectric signals into the optical domain will pave the way for the deployment of high-bandwidth optical telecommunications techniques in ultra-miniature clinical diagnostic and research laboratory neural and cardiac interfaces.
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Labani M, Afrasiabi A, Beheshti A, Lovell NH, Alinejad-Rokny H. PeakCNV: A multi-feature ranking algorithm-based tool for genome-wide copy number variation-association study. Comput Struct Biotechnol J 2022; 20:4975-4983. [PMID: 36147666 PMCID: PMC9478359 DOI: 10.1016/j.csbj.2022.09.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 08/31/2022] [Accepted: 09/01/2022] [Indexed: 11/25/2022] Open
Abstract
Copy Number Variation (CNV) refers to a type of structural genomic alteration in which a segment of chromosome is duplicated or deleted. To date, many CNVs have been identified as causative genetic elements for several diseases and phenotypes. However, performing a CNV-based genome-wide association study is challenging due to inconsistency in length and occurrence of CNVs across different individuals under investigation. One of the most efficient strategies to address this issue is building CNV regions (genomic regions in which CNVs are overlapping - CNVRs). However, this approach is susceptible to a high false positive rate due to overlapping and co-occurring of confounding CNVRs with true positive CNVRs. Here, we develop PeakCNV that differentiates false-positive CNVRs from true positives by calculating a new metric, independence ranking score, (IR-score) via a feature ranking approach. We compared the performance of PeakCNV with other current existing tools by carrying out two case studies one using the CNV genotype data for individuals with prostate cancer (194 cases and 2,392 healthy individuals) and the second one for individuals with neurodevelopmental disorders (19,642 cases and 6,451 healthy individuals). Crucially, our benchmarking analyses on prostate cancer cohort indicated that PeakCNV identifies a fewer risk candidate CNVRs with shorter lengths compared to other tools. Importantly, these CNVRs cover a greater proportion of case over healthy individuals compared to other tools. The accuracy of PeakCNV in identifying relevant candidate CNVRs was reproducible in the case study on neurodevelopmental disorders. Using data from the FANTOM5 expression atlas and the Clinical Genomic Database, we show that the candidate CNVRs identified by PeakCNV for neurodevelopmental disorders overlap with a greater number of genes with the brain-enriched expression, and a greater number of genes that are associated with neurological conditions compared to candidate CNVRs identified by other tools. Taken together, PeakCNV outperformed current existing CNV association study tools by identifying more biologically meaningful CNVRs relevant to the phenotype of interest. PeakCNV is publicly available for the analysis of CNV-associated diseases and is accessible from https://rdrr.io/github/mahdieh1/PeakCNV.
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Affiliation(s)
- Mahdieh Labani
- BioMedical Machine Learning Lab (BML), The Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, NSW 2052, Australia.,Data Analytics Lab, School of Computing, Macquarie University, Sydney, NSW 2109, Australia
| | - Ali Afrasiabi
- BioMedical Machine Learning Lab (BML), The Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, NSW 2052, Australia
| | - Amin Beheshti
- Data Analytics Lab, School of Computing, Macquarie University, Sydney, NSW 2109, Australia
| | - Nigel H Lovell
- The Graduate School of Biomedical Engineering (GSBmE), UNSW Sydney, Sydney, NSW, 2052, Australia.,Tyree Institute of Health Engineering (IHealthE), UNSW Sydney, Sydney, NSW 2052, Australia
| | - Hamid Alinejad-Rokny
- BioMedical Machine Learning Lab (BML), The Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, NSW 2052, Australia.,UNSW Data Science Hub, The University of New South Wales, Sydney, NSW 2052, Australia.,Health Data Analytics Program, AI-enabled Processes (AIP) Research Centre, Macquarie University, Sydney 2109, Australia
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26
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Alqahtani A, Alabed A, Alharbi Y, Bakouri M, Lovell NH, Dokos S. A varying-radius cable equation for the modelling of impulse propagation in excitable fibres. Int J Numer Method Biomed Eng 2022; 38:e3616. [PMID: 35582823 DOI: 10.1002/cnm.3616] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Revised: 04/01/2022] [Accepted: 05/06/2022] [Indexed: 06/15/2023]
Abstract
In this study, we present a varying-radius cable equation for nerve fibres taking into account the varying diameter along the neuronal segments. Finite element neuronal models utilising the classical (fixed-radius) and varying-radius cable formulations were compared using simple and realistic morphologies under intra- and extracellular electrical stimulation protocols. We found that the use of the classical cable equation to model intracellular neural electrical stimulation exhibited an error of 17% in a passive resistive cable model with abrupt change in radius from 1 to 2 μm, when compared to the known analytical solution and varying-radius cable formulation. This error was observed to increase substantially using more realistic neuron morphologies and branching structures. In the case of extracellular stimulation however, the difference between the classical and varying-radius formulations was less pronounced, but we expect this difference will increase under more complex stimulation paradigms such as high-frequency stimulation. We conclude that for computational neuroscience applications, it is essential to use the varying-radius cable equation for accurate prediction of neuronal responses under electrical stimulation.
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Affiliation(s)
- Abdulrahman Alqahtani
- Department of Medical Equipment Technology, College of Applied Medical Science, Majmaah University, AL-Majmaah, Saudi Arabia
| | - Amr Alabed
- Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, New South Wales, Australia
| | - Yousef Alharbi
- Department of Medical Equipment Technology, College of Applied Medical Sciences, Prince Sattam Bin Abdulaziz University, Al-Kharj, Saudi Arabia
| | - Mohsen Bakouri
- Department of Medical Equipment Technology, College of Applied Medical Science, Majmaah University, AL-Majmaah, Saudi Arabia
| | - Nigel H Lovell
- Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, New South Wales, Australia
| | - Socrates Dokos
- Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, New South Wales, Australia
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27
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Alharbi Y, Al Abed A, Bakir AA, Lovell NH, Muller DWM, Otton J, Dokos S. Fluid structure computational model of simulating mitral valve motion in a contracting left ventricle. Comput Biol Med 2022; 148:105834. [PMID: 35816854 DOI: 10.1016/j.compbiomed.2022.105834] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Revised: 06/24/2022] [Accepted: 07/04/2022] [Indexed: 11/17/2022]
Abstract
BACKGROUND Fluid structure interaction simulations h hold promise in studying normal and abnormal cardiac function, including the effect of fluid dynamics on mitral valve (MV) leaflet motion. The goal of this study was to develop a 3D fluid structure interaction computational model to simulate bileaflet MV when interacting with blood motion in left ventricle (LV). METHODS The model consists of ideal geometric-shaped MV leaflets and the LV, with MV dimensions based on human anatomical measurements. An experimentally-based hyperelastic isotropic material was used to model the mechanical behaviour of the MV leaflets, with chordae tendineae and papillary muscle tips also incorporated. LV myocardial tissue was prescribed using a transverse isotropic hyperelastic formulation. Incompressible Navier-Stokes fluid formulations were used to govern the blood motion, and the Arbitrary Lagrangian Eulerian (ALE) method was employed to determine the mesh deformation of the fluid and solid domains due to trans-valvular pressure on MV boundaries and the resulting leaflet movement. RESULTS The LV-MV generic model was able to reproduce physiological MV leaflet opening and closing profiles resulting from the time-varying atrial and ventricular pressures, as well as simulating normal and prolapsed MV states. Additionally, the model was able to simulate blood flow patterns after insertion of a prosthetic MV with and without left ventricular outflow tract flow obstruction. In the MV-LV normal model, the regurgitant blood flow fraction was 10.1 %, with no abnormality in cardiac function according to the mitral regurgitation severity grades reported by the American Society of Echocardiography. CONCLUSION Our simulation approach provides insights into intraventricular fluid dynamics in a contracting LV with normal and prolapsed MV function, as well as aiding in the understanding of possible complications after transcatheter MV implantation prior to clinical trials.
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Affiliation(s)
- Yousef Alharbi
- College of Applied Medical Sciences, Prince Sattam Bin Abdulaziz University, Al-Kharj, Saudi Arabia; Graduate School of Biomedical Engineering, University of New South Wales, Sydney, Australia.
| | - Amr Al Abed
- Graduate School of Biomedical Engineering, University of New South Wales, Sydney, Australia.
| | - Azam Ahmad Bakir
- Graduate School of Biomedical Engineering, University of New South Wales, Sydney, Australia; University of Southampton Malaysia Campus, Iskandar Puteri, Johor, Malaysia.
| | - Nigel H Lovell
- Graduate School of Biomedical Engineering, University of New South Wales, Sydney, Australia.
| | - David W M Muller
- Victor Chang Cardiac Research Institute, Sydney, Australia; Department of Cardiology and Cardiothoracic Surgery, St Vincent's Hospital, Sydney, Australia.
| | - James Otton
- Victor Chang Cardiac Research Institute, Sydney, Australia; Department of Cardiology, Liverpool Hospital, Sydney, Australia.
| | - Socrates Dokos
- Graduate School of Biomedical Engineering, University of New South Wales, Sydney, Australia.
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28
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Cleary JD, Kekesi O, Hasmat S, Low THH, Lovell NH, Clark JR, Suaning GJ. Overcoming Facial Paralysis with an Implantable Actuator for Restoration of Blink. Annu Int Conf IEEE Eng Med Biol Soc 2022; 2022:1498-1501. [PMID: 36085991 DOI: 10.1109/embc48229.2022.9871833] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
The loss of the ability to blink the eyelid is considered the most severe effect of facial nerve paralysis. The delicate homeostasis of the eye is disrupted, and without frequent intervention, the cornea can become damaged, ultimately resulting in blindness. The psychosocial impact is also significant, with individuals withdrawing from society to hide what they perceive to be a disfigurement. Surgical and engineering interventions have been devised to reanimate blink, however, a solution has yet to be designed which addresses both functional and aesthetic concerns. Here we describe an implantable electromagnetic actuator to restore the capacity to blink. Triggered synchronously with the contralateral eye, and externally modifiable to tailor treatment post-operatively to the individual, this implant restores complete blinking and a natural appearance. Cadaver studies (N=12) have been used to validate the device design, including the form factor and force required to elicit a blink, while a passive in vivo study (N=1) has verified the surgical protocol and recovery.
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29
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Goh CH, Celler BG, Lovell NH, Lim E, Lim WY. A Comparison of Haemodynamic Responses between Head-Up Tilt and Lower Body Negative Pressure. Annu Int Conf IEEE Eng Med Biol Soc 2022; 2022:4439-4444. [PMID: 36086388 DOI: 10.1109/embc48229.2022.9871420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Orthostatic intolerance (OI), a disorder of the autonomic nervous system, it is the development of symptoms when standing upright which are relieved when reclining. Head-up tilt (HUT) table test is a common test for assessing orthostatic tolerance. However, HUT is limited with low sensitivity and specificity. Another approach to stimulate the changing direction and value of the gravity field vector is the lower body negative pressure (LBNP) chamber. The aims of the study is to evaluate the physiological responses of healthy subjects on HUT and LBNP, and examine the relations of two tests. A total of 19 subjects were recruited. A validated wearable device, Sotera Visi Mobile was use to collect physiological signals simultaneously throughout the experiment procedures. Each subject went through a baseline supine rest, 70o of HUT test, another round of baseline supine rest, followed by activation of LBNP test. Three level of suction were applied, i.e. -30 mmHg, -40 mmHg, and -50 mmHg. In this pilot study, healthy subjects showed significantly increased of heart rate, and decreased of systolic blood pressure and diastolic blood pressure, in both HUT and LBNP tests. Although both tests are capable of stimulating a decreased blood volume in the central circulation, but the physiological responses behaved differently and shown only very week correlation. This suggesting that a combination of LBNP test with HUT test might work the best in orthostatic intolerance assessment.
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30
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Almasri RM, Abed AA, Esrafilzadeh D, Mawad D, Poole-Warren LA, Lovell NH. Electromechanical Stability and Transmission Behavior of Transparent Conductive Films for Biomedical Optoelectronic Devices. Annu Int Conf IEEE Eng Med Biol Soc 2022; 2022:5-8. [PMID: 36086039 DOI: 10.1109/embc48229.2022.9870827] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
The application of transparent conductive films to flexible biomedical optoelectronics is limited by stringent requirements on the candidate materials' electromechanical and optical properties as well as their biological performance. Thin films of graphene and poly(3,4-ethylenedioxythiophene) polystyrene sulfonate (PEDOT:PSS) are sought as mechanically flexible alternatives to traditional indium tin oxide (ITO). However, they require more understanding of their suitability for biomedical optoelectronic devices in terms of transmission behavior and electromechanical stability. This study shows that the relative increase in sheet resistance under cyclic loading for ITO, graphene, and PEDOT:PSS was 3546±3908%,12±2.7%, and 62±68%, respectively. Moreover, graphene and PEDOT:PSS showed a transmission uniformity of 9.3% and 36.3% (380-2000 nm), respectively, compared with ITO film (61%). Understanding the optical, electrical, and mechanical limits of the transparent conductive films facilitates the optimization of flexible optoelectronic designs to fit multiple biomedical research and clinical applications.
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Rezaei A, Stevens MC, Argha A, Mascheroni A, Puiatti A, Lovell NH. An Unobtrusive Human Activity Recognition System Using Low Resolution Thermal Sensors, Machine and Deep Learning. IEEE Trans Biomed Eng 2022; 70:115-124. [PMID: 35759592 DOI: 10.1109/tbme.2022.3186313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Given the aging population, healthcare systems need to be established to deal with health issues such as injurious falls. Wearable devices can be used to detect falls. However, most wearable devices are obtrusive, and patients generally do not like or may forget to wear them. In this study, we developed an unobtrusive monitoring system using infrared technology to unobtrusively detect locations and recognize human activities such as sitting, standing, walking, lying, and falling. We prototyped a system consisting of two 24×32 thermal array sensors and collected data from healthy young volunteers performing ten different scenarios. A supervised deep learning (DL)-based approach classified activities and detected locations from images. The performance of the DL approach was also compared with the machine learning (ML)-based methods. In addition, we fused the data of two sensors and formed a stereo system, which resulted in better performance compared to a single sensor. Furthermore, to detect critical activities such as falling and lying on floor, we performed a binary classification in which one class was falling plus lying on floor and another class was all the remaining activities. Using the DL-based algorithm on the stereo dataset to recognize activities, overall average accuracy and F1-score were achieved as 97.6%, and 0.935, respectively. These scores for location detection were 97.3%, and 0.927, respectively. These scores for binary classification were 97.9%, and 0.945, respectively. Our results suggest the proposed system recognized human activities, detected locations, and detected critical activities namely falling and lying on floor accurately.
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Rezaie N, Bayati M, Hamidi M, Tahaei MS, Khorasani S, Lovell NH, Breen J, Rabiee HR, Alinejad-Rokny H. Somatic point mutations are enriched in non-coding RNAs with possible regulatory function in breast cancer. Commun Biol 2022; 5:556. [PMID: 35672401 PMCID: PMC9174258 DOI: 10.1038/s42003-022-03528-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Accepted: 05/24/2022] [Indexed: 11/09/2022] Open
Abstract
Non-coding RNAs (ncRNAs) form a large portion of the mammalian genome. However, their biological functions are poorly characterized in cancers. In this study, using a newly developed tool, SomaGene, we analyze de novo somatic point mutations from the International Cancer Genome Consortium (ICGC) whole-genome sequencing data of 1,855 breast cancer samples. We identify 1030 candidates of ncRNAs that are significantly and explicitly mutated in breast cancer samples. By integrating data from the ENCODE regulatory features and FANTOM5 expression atlas, we show that the candidate ncRNAs significantly enrich active chromatin histone marks (1.9 times), CTCF binding sites (2.45 times), DNase accessibility (1.76 times), HMM predicted enhancers (2.26 times) and eQTL polymorphisms (1.77 times). Importantly, we show that the 1030 ncRNAs contain a much higher level (3.64 times) of breast cancer-associated genome-wide association (GWAS) single nucleotide polymorphisms (SNPs) than genome-wide expectation. Such enrichment has not been seen with GWAS SNPs from other cancers. Using breast cell line related Hi-C data, we then show that 82% of our candidate ncRNAs (1.9 times) significantly interact with the promoter of protein-coding genes, including previously known cancer-associated genes, suggesting the critical role of candidate ncRNA genes in the activation of essential regulators of development and differentiation in breast cancer. We provide an extensive web-based resource (https://www.ihealthe.unsw.edu.au/research) to communicate our results with the research community. Our list of breast cancer-specific ncRNA genes has the potential to provide a better understanding of the underlying genetic causes of breast cancer. Lastly, the tool developed in this study can be used to analyze somatic mutations in all cancers. The SomaGene tool is developed to identify non-coding RNAs (ncRNAs) mutated in breast cancer but can be used for other cancers. Candidate ncRNAs are shown to be enriched for regulatory features and to contain specific trait loci polymorphisms.
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Affiliation(s)
- Narges Rezaie
- Center for Complex Biological Systems, University of California Irvine, Irvine, CA, 92697, USA
| | - Masroor Bayati
- Bioinformatics and Computational Biology Lab, Department of Computer Engineering, Sharif University of Technology, Tehran, 11365, Iran
| | - Mehrab Hamidi
- Bioinformatics and Computational Biology Lab, Department of Computer Engineering, Sharif University of Technology, Tehran, 11365, Iran
| | - Maedeh Sadat Tahaei
- Bioinformatics and Computational Biology Lab, Department of Computer Engineering, Sharif University of Technology, Tehran, 11365, Iran
| | - Sadegh Khorasani
- Bioinformatics and Computational Biology Lab, Department of Computer Engineering, Sharif University of Technology, Tehran, 11365, Iran
| | - Nigel H Lovell
- Tyree Institute of Health Engineering and The Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, NSW, 2052, Australia
| | - James Breen
- South Australian Health & Medical Research Institute, Adelaide, SA, 5000, Australia.,Robinson Research Institute, University of Adelaide, Adelaide, SA, 5006, Australia.,Bioinformatics Hub, University of Adelaide, Adelaide, SA, 5006, Australia
| | - Hamid R Rabiee
- Bioinformatics and Computational Biology Lab, Department of Computer Engineering, Sharif University of Technology, Tehran, 11365, Iran.
| | - Hamid Alinejad-Rokny
- BioMedical Machine Learning Lab (BML), The Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, NSW, 2052, Australia. .,UNSW Data Science Hub, The University of New South Wales (UNSW Sydney), Sydney, NSW, 2052, Australia. .,Health Data Analytics Program, AI-enabled Processes (AIP) Research Centre, Macquarie University, Sydney, NSW, 2109, Australia.
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33
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Italiano ML, Guo T, Lovell NH, Tsai D. Improving the spatial resolution of artificial vision using midget retinal ganglion cell populations modelled at the human fovea. J Neural Eng 2022; 19. [PMID: 35609556 DOI: 10.1088/1741-2552/ac72c2] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2022] [Accepted: 05/24/2022] [Indexed: 11/11/2022]
Abstract
OBJECTIVE Retinal prostheses seek to create artificial vision by stimulating surviving retinal neurons of patients with profound vision impairment. Notwithstanding tremendous research efforts, the performance of all implants tested to date has remained rudimentary, incapable of overcoming the threshold for legal blindness. To maximize the perceptual efficacy of retinal prostheses, a device must be capable of controlling retinal neurons with greater spatiotemporal precision. Most studies of retinal stimulation were derived from either non-primate species or the peripheral primate retina. We investigated if artificial stimulation could leverage the high spatial resolution afforded by the neural substrates at the primate fovea and surrounding regions to achieve improved percept qualities. APPROACH We began by developing a new computational model capable of generating anatomically accurate retinal ganglion cell (RGC) populations within the human central retina. Next, multiple RGC populations across the central retina were stimulated in-silico to compare clinical and recently proposed neurostimulation configurations based on their ability to improve perceptual efficacy and reduce activation thresholds. MAIN RESULTS Our model uniquely upholds eccentricity-dependent characteristics such as RGC density and dendritic field diameter, whilst incorporating anatomically accurate features such as axon projection and three-dimensional RGC layering, features often forgone in favor of reduced computational complexity. Following epiretinal stimulation, the RGCs in our model produced response patterns in shapes akin to the complex percepts reported in clinical trials. Our results also demonstrated that even within the neuron-dense central retina, epiretinal stimulation using a multi-return hexapolar electrode arrangement could reliably achieve spatially focused RGC activation and could achieve single-cell excitation in 74% of all tested locations. SIGNIFICANCE This study establishes an anatomically accurate three-dimensional model of the human central retina and demonstrates the potential for an epiretinal hexapolar configuration to achieve consistent, spatially confined retinal responses, even within the neuron-dense foveal region. Our results promote the prospect and optimization of higher spatial resolution in future epiretinal implants.
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Affiliation(s)
- Michael Lewis Italiano
- Graduate School of Biomedical Engineering, University of New South Wales, Sydney, Sydney, New South Wales, 2052, AUSTRALIA
| | - Tianruo Guo
- Graduate School of Biomedical Engineering, University of New South Wales, Sydney, Sydney, New South Wales, 2052, AUSTRALIA
| | - Nigel H Lovell
- Graduate School of Biomedical Engineering, University of New South Wales, Sydney, Sydney, New South Wales, 2052, AUSTRALIA
| | - David Tsai
- Graduate School of Biomedical Engineering, University of New South Wales, Sydney, Sydney, New South Wales, 2052, AUSTRALIA
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Indraratna P, Biswas U, McVeigh J, Mamo A, Magdy J, Vickers D, Watkins E, Ziegl A, Liu H, Cholerton N, Li J, Holgate K, Fildes J, Gallagher R, Ferry C, Jan S, Briggs N, Schreier G, Redmond SJ, Loh E, Yu J, Lovell NH, Ooi SY. A Smartphone-Based Model of Care to Support Patients With Cardiac Disease Transitioning From Hospital to the Community (TeleClinical Care): Pilot Randomized Controlled Trial. JMIR Mhealth Uhealth 2022; 10:e32554. [PMID: 35225819 PMCID: PMC8922139 DOI: 10.2196/32554] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2021] [Revised: 09/13/2021] [Accepted: 12/09/2021] [Indexed: 12/11/2022] Open
Abstract
Background Patients hospitalized with acute coronary syndrome (ACS) or heart failure (HF) are frequently readmitted. This is the first randomized controlled trial of a mobile health intervention that combines telemonitoring and education for inpatients with ACS or HF to prevent readmission. Objective This study aims to investigate the feasibility, efficacy, and cost-effectiveness of a smartphone app–based model of care (TeleClinical Care [TCC]) in patients discharged after ACS or HF admission. Methods In this pilot, 2-center randomized controlled trial, TCC was applied at discharge along with usual care to intervention arm participants. Control arm participants received usual care alone. Inclusion criteria were current admission with ACS or HF, ownership of a compatible smartphone, age ≥18 years, and provision of informed consent. The primary end point was the incidence of unplanned 30-day readmissions. Secondary end points included all-cause readmissions, cardiac readmissions, cardiac rehabilitation completion, medication adherence, cost-effectiveness, and user satisfaction. Intervention arm participants received the app and Bluetooth-enabled devices for measuring weight, blood pressure, and physical activity daily plus usual care. The devices automatically transmitted recordings to the patients’ smartphones and a central server. Thresholds for blood pressure, heart rate, and weight were determined by the treating cardiologists. Readings outside these thresholds were flagged to a monitoring team, who discussed salient abnormalities with the patients’ usual care providers (cardiologists, general practitioners, or HF outreach nurses), who were responsible for further management. The app also provided educational push notifications. Participants were followed up after 6 months. Results Overall, 164 inpatients were randomized (TCC: 81/164, 49.4%; control: 83/164, 50.6%; mean age 61.5, SD 12.3 years; 130/164, 79.3% men; 128/164, 78% admitted with ACS). There were 11 unplanned 30-day readmissions in both groups (P=.97). Over a mean follow-up of 193 days, the intervention was associated with a significant reduction in unplanned hospital readmissions (21 in TCC vs 41 in the control arm; P=.02), including cardiac readmissions (11 in TCC vs 25 in the control arm; P=.03), and higher rates of cardiac rehabilitation completion (20/51, 39% vs 9/49, 18%; P=.03) and medication adherence (57/76, 75% vs 37/74, 50%; P=.002). The average usability rating for the app was 4.5/5. The intervention cost Aus $6028 (US $4342.26) per cardiac readmission saved. When modeled in a mainstream clinical setting, enrollment of 237 patients was projected to have the same expenditure compared with usual care, and enrollment of 500 patients was projected to save approximately Aus $100,000 (approximately US $70,000) annually. Conclusions TCC was feasible and safe for inpatients with either ACS or HF. The incidence of 30-day readmissions was similar; however, long-term benefits were demonstrated, including fewer readmissions over 6 months, improved medication adherence, and improved cardiac rehabilitation completion. Trial Registration Australian New Zealand Clinical Trials Registry ACTRN12618001547235; https://www.anzctr.org.au/Trial/Registration/TrialReview.aspx?id=375945
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Affiliation(s)
- Praveen Indraratna
- Department of Cardiology, Prince of Wales Hospital, Randwick, Australia
- Prince of Wales Clinical School, UNSW Sydney, Sydney, Australia
| | - Uzzal Biswas
- Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, Australia
| | - James McVeigh
- Department of Cardiology, Prince of Wales Hospital, Randwick, Australia
| | - Andrew Mamo
- Department of Cardiology, Prince of Wales Hospital, Randwick, Australia
| | - Joseph Magdy
- Department of Cardiology, Prince of Wales Hospital, Randwick, Australia
- Department of Cardiology, The Sutherland Hospital, Sydney, Australia
| | - Dominic Vickers
- Department of Cardiology, Prince of Wales Hospital, Randwick, Australia
| | - Elaine Watkins
- Department of Cardiology, Prince of Wales Hospital, Randwick, Australia
| | - Andreas Ziegl
- Center for Health and Bioresources, Austrian Institute of Technology, Graz, Austria
| | - Hueiming Liu
- The George Institute for Global Health, Sydney, Australia
| | | | - Joan Li
- Department of Cardiology, Prince of Wales Hospital, Randwick, Australia
| | - Katie Holgate
- Department of Cardiology, Prince of Wales Hospital, Randwick, Australia
| | - Jennifer Fildes
- Department of Cardiology, Prince of Wales Hospital, Randwick, Australia
| | - Robyn Gallagher
- Susan Wakil School of Nursing and Midwifery, Charles Perkins Centre, University of Sydney, Sydney, Australia
| | - Cate Ferry
- National Heart Foundation of Australia, Sydney, Australia
| | - Stephen Jan
- The George Institute for Global Health, Sydney, Australia
| | - Nancy Briggs
- Stats Central, Mark Wainwright Analytical Centre, UNSW Sydney, Sydney, Australia
| | - Guenter Schreier
- Center for Health and Bioresources, Austrian Institute of Technology, Graz, Austria
| | - Stephen J Redmond
- Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, Australia
- School of Electrical and Electronic Engineering, University College Dublin, Dublin, Ireland
| | - Eugene Loh
- Department of Cardiology, The Sutherland Hospital, Sydney, Australia
| | - Jennifer Yu
- Department of Cardiology, Prince of Wales Hospital, Randwick, Australia
- Prince of Wales Clinical School, UNSW Sydney, Sydney, Australia
| | - Nigel H Lovell
- Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, Australia
| | - Sze-Yuan Ooi
- Department of Cardiology, Prince of Wales Hospital, Randwick, Australia
- Prince of Wales Clinical School, UNSW Sydney, Sydney, Australia
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Indraratna P, Biswas U, Liu H, Redmond SJ, Yu J, Lovell NH, Ooi SY. Process Evaluation of a Randomised Controlled Trial for TeleClinical Care, a Smartphone-App Based Model of Care. Front Med (Lausanne) 2022; 8:780882. [PMID: 35211483 PMCID: PMC8862755 DOI: 10.3389/fmed.2021.780882] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Accepted: 12/30/2021] [Indexed: 11/13/2022] Open
Abstract
Background A novel smartphone app-based model of care (TeleClinical Care – TCC) for patients with acute coronary syndrome (ACS) and heart failure (HF) was evaluated in a two-site, pilot randomised control trial of 164 participants in Sydney, Australia. The program included a telemonitoring system whereby abnormal blood pressure, weight and heart rate readings were monitored by a central clinical team, who subsequently referred clinically significant alerts to the patients' usual general practitioner (GP, also known as primary care physician in the United States), HF nurse or cardiologist. While the primary endpoint, 30-day readmissions, was neutral, intervention arm participants demonstrated improvements in readmission rates over 6 months, cardiac rehabilitation (CR) completion and medication compliance. A process evaluation was designed to identify contextual factors and mechanisms that influenced the results, as well as strategies of improving site and participant recruitment and the delivery of the intervention, for a planned larger effectiveness trial of over 1,000 patients across the state of New South Wales, Australia (TCC-Cardiac). Methods Multiple data sources were used in this mixed-methods process evaluation, including interviews with four TCC team members, three GPs and three cardiologists. CR completion rates, HF outreach service (HFOS) referrals and cardiologist follow-up appointments were audited. A patient questionnaire was also analysed for evidence of improved self-care as a hypothesised mechanism of the TCC app. An implementation research logic model was used to synthesise our findings. Results Rates of HFOS referral (83 vs. 72%) and cardiologist follow-up (96 vs. 93%) were similarly high in the intervention and control arms, respectively. Team members were largely positive towards their orientation and training, but highlighted several implementation strategies that could be optimised for TCC-Cardiac: streamlining of the enrolment process, improving the reach of the trial by screening patients in non-cardiac wards, and ensuring team members had adequate time to recruit (>15 h per week). GPs and cardiologists viewed the intervention acceptably regarding potential benefit of closely monitoring, and responding to abnormalities for their patients, though there were concerns of the potential additional workload generated by alerts that did not merit clinical intervention. Clear delineation of which clinician (GP or cardiologist) was primarily responsible for alert management was also recommended, as well as a preference to receive regular summary data. Several patients commented on the mechanisms of improved self-management because of TCC, which could have led to the outcome of improved medication compliance. Discussion Use of TCC was associated with several benefits, including higher patient engagement and completion rates with CR. The conduct and delivery of TCC-Cardiac will be improved by the findings of this process evaluation to optimise recruitment, and establishing the roles of GPs and cardiologists as part of the model.
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Affiliation(s)
- Praveen Indraratna
- Department of Cardiology, Prince of Wales Hospital, Sydney, NSW, Australia.,Prince of Wales Clinical School, University of New South Wales (UNSW), Sydney, NSW, Australia
| | - Uzzal Biswas
- Graduate School of Biomedical Engineering, University of New South Wales (UNSW), Sydney, NSW, Australia
| | - Hueiming Liu
- Centre for Health Systems Science, The George Institute for Global Health, Sydney, NSW, Australia
| | - Stephen J Redmond
- Graduate School of Biomedical Engineering, University of New South Wales (UNSW), Sydney, NSW, Australia.,School of Electrical and Electronic Engineering, University College Dublin, Dublin, Ireland
| | - Jennifer Yu
- Department of Cardiology, Prince of Wales Hospital, Sydney, NSW, Australia.,Prince of Wales Clinical School, University of New South Wales (UNSW), Sydney, NSW, Australia
| | - Nigel H Lovell
- Graduate School of Biomedical Engineering, University of New South Wales (UNSW), Sydney, NSW, Australia.,Tyree Institute of Health Engineering, University of New South Wales (UNSW), Sydney, NSW, Australia
| | - Sze-Yuan Ooi
- Department of Cardiology, Prince of Wales Hospital, Sydney, NSW, Australia.,Prince of Wales Clinical School, University of New South Wales (UNSW), Sydney, NSW, Australia.,Tyree Institute of Health Engineering, University of New South Wales (UNSW), Sydney, NSW, Australia
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Fetanat M, Stevens M, Jain P, Hayward C, Meijering E, Lovell NH. Fully Elman Neural Network: A Novel Deep Recurrent Neural Network Optimized by an Improved Harris Hawks Algorithm for Classification of Pulmonary Arterial Wedge Pressure. IEEE Trans Biomed Eng 2021; 69:1733-1744. [PMID: 34813462 DOI: 10.1109/tbme.2021.3129459] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Heart failure (HF) is one of the most prevalent life-threatening cardiovascular diseases in which 6.5 million people are suffering in the USA and more than 23 million worldwide. Mechanical circulatory support of HF patients can be achieved by implanting a left ventricular assist device (LVAD) into HF patients as a bridge to transplant, recovery or destination therapy and can be controlled by measurement of normal and abnormal pulmonary arterial wedge pressure (PAWP). While there are no commercial long-term implantable pressure sensors to measure PAWP, real-time non-invasive estimation of abnormal and normal PAWP becomes vital. In this work, first an improved Harris Hawks optimizer algorithm called HHO+ is presented and tested on 24 unimodal and multimodal benchmark functions. Second, a novel fully Elman neural network (FENN) is proposed to improve the classification performance. Finally, four novel 18-layer deep learning methods of convolutional neural networks (CNNs) with multi-layer perceptron (CNN-MLP), CNN with Elman neural networks (CNN-ENN), CNN with fully Elman neural networks (CNN-FENN), and CNN with fully Elman neural networks optimized by HHO+ algorithm (CNN-FENN-HHO+) for classification of abnormal and normal PAWP using estimated HVAD pump flow were developed and compared. The estimated pump flow was derived by a non-invasive method embedded into the commercial HVAD controller. The proposed methods are evaluated on an imbalanced clinical dataset using 5-fold cross-validation. The proposed CNN-FENN-HHO+ method outperforms the proposed CNN-MLP, CNN-ENN and CNN-FENN methods and improved the classification performance metrics across 5-fold cross-validation with an average sensitivity of 79%, accuracy of 78% and specificity of 76%. The proposed methods can reduce the likelihood of hazardous events like pulmonary congestion and ventricular suction for HF patients and notify identified abnormal cases to the hospital, clinician and cardiologist for emergency action, which can diminish the mortality rate of patients with HF.
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Phan PT, Hoang TT, Thai MT, Low H, Davies J, Lovell NH, Do TN. Smart surgical sutures using soft artificial muscles. Sci Rep 2021; 11:22420. [PMID: 34789808 PMCID: PMC8599709 DOI: 10.1038/s41598-021-01910-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Accepted: 11/08/2021] [Indexed: 02/06/2023] Open
Abstract
Wound closure with surgical sutures is a critical challenge for flexible endoscopic surgeries. Substantial efforts have been introduced to develop functional and smart surgical sutures to either monitor wound conditions or ease the complexity of knot tying. Although research interests in smart sutures by soft robotic technologies have emerged for years, it is challenging to develop a soft robotic structure that possesses a similar physical structure as conventional sutures while offering a self-tightening knot or anchor to close the wound. This paper introduces a new concept of smart sutures that can be programmed to achieve desired and uniform tension distribution while offering self-tightening knots or automatically deploying secured anchors. The core technology is a soft hydraulic artificial muscle that can be elongated and contracted under applied fluid pressure. Each suture is equipped with a pressure locking mechanism to hold its temporary elongated state and to induce self-shrinking ability. The puncturing and holding force for the smart sutures with anchors are examined. Ex-vivo experiments on fresh porcine stomach and colon demonstrate the usefulness of the new smart sutures. The new approaches are expected to pave the way for the further development of smart sutures that will benefit research, training, and commercialization in the surgical field.
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Affiliation(s)
- Phuoc Thien Phan
- Graduate School of Biomedical Engineering, Faculty of Engineering, University of New South Wales (UNSW), Sydney, NSW, 2052, Australia
| | - Trung Thien Hoang
- Graduate School of Biomedical Engineering, Faculty of Engineering, University of New South Wales (UNSW), Sydney, NSW, 2052, Australia
| | - Mai Thanh Thai
- Graduate School of Biomedical Engineering, Faculty of Engineering, University of New South Wales (UNSW), Sydney, NSW, 2052, Australia
| | - Harrison Low
- Graduate School of Biomedical Engineering, Faculty of Engineering, University of New South Wales (UNSW), Sydney, NSW, 2052, Australia
| | - James Davies
- Graduate School of Biomedical Engineering, Faculty of Engineering, University of New South Wales (UNSW), Sydney, NSW, 2052, Australia
| | - Nigel H Lovell
- Graduate School of Biomedical Engineering, Faculty of Engineering, University of New South Wales (UNSW), Sydney, NSW, 2052, Australia
| | - Thanh Nho Do
- Graduate School of Biomedical Engineering, Faculty of Engineering, University of New South Wales (UNSW), Sydney, NSW, 2052, Australia.
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Eggenberger SC, James NL, Ho C, Eamegdool SS, Tatarinoff V, Craig NA, Gow BS, Wan S, Dodds CWD, La Hood D, Gilmour A, Donahoe SL, Krockenberger M, Tumuluri K, da Cruz MJ, Grigg JR, McCluskey P, Lovell NH, Madigan MC, Fung AT, Suaning GJ. Implantation and long-term assessment of the stability and biocompatibility of a novel 98 channel suprachoroidal visual prosthesis in sheep. Biomaterials 2021; 279:121191. [PMID: 34768150 DOI: 10.1016/j.biomaterials.2021.121191] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2020] [Revised: 09/28/2021] [Accepted: 10/18/2021] [Indexed: 11/25/2022]
Abstract
Severe visual impairment can result from retinal degenerative diseases such as retinitis pigmentosa, which lead to photoreceptor cell death. These pathologies result in extensive neural and glial remodelling, with survival of excitable retinal neurons that can be electrically stimulated to elicit visual percepts and restore a form of useful vision. The Phoenix99 Bionic Eye is a fully implantable visual prosthesis, designed to stimulate the retina from the suprachoroidal space. In the current study, nine passive devices were implanted in an ovine model from two days to three months. The impact of the intervention and implant stability were assessed using indirect ophthalmoscopy, infrared imaging, and optical coherence tomography to establish the safety profile of the surgery and the device. The biocompatibility of the device was evaluated using histopathological analysis of the tissue surrounding the electrode array, with a focus on the health of the retinal cells required to convey signals to the brain. Appropriate stability of the electrode array was demonstrated, and histological analysis shows that the fibrotic and inflammatory response to the array was mild. Promising evidence of the safety and potential of the Phoenix99 Bionic Eye to restore a sense of vision to the severely visually impaired was obtained.
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Affiliation(s)
- Samuel C Eggenberger
- School of Biomedical Engineering, Faculty of Engineering, University of Sydney, Sydney, Australia
| | - Natalie L James
- Graduate School of Biomedical Engineering, University of New South Wales (UNSW), Sydney, Australia
| | - Cherry Ho
- Graduate School of Biomedical Engineering, University of New South Wales (UNSW), Sydney, Australia
| | - Steven S Eamegdool
- Save Sight Institute, The University of Sydney, Specialty of Clinical Ophthalmology and Eye Health, Faculty of Medicine and Health, Australia
| | - Veronika Tatarinoff
- Graduate School of Biomedical Engineering, University of New South Wales (UNSW), Sydney, Australia
| | - Naomi A Craig
- Graduate School of Biomedical Engineering, University of New South Wales (UNSW), Sydney, Australia
| | - Barry S Gow
- Graduate School of Biomedical Engineering, University of New South Wales (UNSW), Sydney, Australia
| | - Susan Wan
- The Westmead Institute for Medical Research, Westmead, Australia
| | - Christopher W D Dodds
- Graduate School of Biomedical Engineering, University of New South Wales (UNSW), Sydney, Australia
| | - Donna La Hood
- Brien Holden Vision Institute, Sydney, Australia; School of Optometry and Vision Science, University of New South Wales (UNSW), Sydney, Australia
| | - Aaron Gilmour
- School of Biomedical Engineering, Faculty of Engineering, University of Sydney, Sydney, Australia; Graduate School of Biomedical Engineering, University of New South Wales (UNSW), Sydney, Australia
| | - Shannon L Donahoe
- Veterinary Pathology Diagnostic Services, Sydney School of Veterinary Science, University of Sydney, Sydney, Australia
| | - Mark Krockenberger
- Veterinary Pathology Diagnostic Services, Sydney School of Veterinary Science, University of Sydney, Sydney, Australia
| | - Krishna Tumuluri
- Save Sight Institute, The University of Sydney, Specialty of Clinical Ophthalmology and Eye Health, Faculty of Medicine and Health, Australia; Westmead Clinical School, Specialty of Clinical Ophthalmology and Eye Health, Faculty of Medicine and Health, University of Sydney, Sydney, Australia; Department of Ophthalmology, Faculty of Medicine and Health Sciences, Macquarie University, New South Wales, Australia
| | - Melville J da Cruz
- Department of Otolaryngology, Westmead Hospital, University of Sydney, Sydney, Australia; Faculty of Medicine and Health, University of Sydney, Sydney, Australia
| | - John R Grigg
- Save Sight Institute, The University of Sydney, Specialty of Clinical Ophthalmology and Eye Health, Faculty of Medicine and Health, Australia; Faculty of Medicine and Health, University of Sydney, Sydney, Australia
| | - Peter McCluskey
- Save Sight Institute, The University of Sydney, Specialty of Clinical Ophthalmology and Eye Health, Faculty of Medicine and Health, Australia; Faculty of Medicine and Health, University of Sydney, Sydney, Australia
| | - Nigel H Lovell
- Graduate School of Biomedical Engineering, University of New South Wales (UNSW), Sydney, Australia
| | - Michele C Madigan
- Save Sight Institute, The University of Sydney, Specialty of Clinical Ophthalmology and Eye Health, Faculty of Medicine and Health, Australia; School of Optometry and Vision Science, University of New South Wales (UNSW), Sydney, Australia
| | - Adrian T Fung
- Save Sight Institute, The University of Sydney, Specialty of Clinical Ophthalmology and Eye Health, Faculty of Medicine and Health, Australia; Westmead Clinical School, Specialty of Clinical Ophthalmology and Eye Health, Faculty of Medicine and Health, University of Sydney, Sydney, Australia; Department of Ophthalmology, Faculty of Medicine and Health Sciences, Macquarie University, New South Wales, Australia
| | - Gregg J Suaning
- School of Biomedical Engineering, Faculty of Engineering, University of Sydney, Sydney, Australia; Graduate School of Biomedical Engineering, University of New South Wales (UNSW), Sydney, Australia.
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Almasri RM, Abed AA, Wei Y, Wang H, Firth J, Poole-Warren LA, Ladouceur F, Lehmann T, Lovell NH. Impedance Properties of Multi-Optrode Biopotential Sensing Arrays. IEEE Trans Biomed Eng 2021; 69:1674-1684. [PMID: 34757898 DOI: 10.1109/tbme.2021.3126849] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Recording and monitoring electrically-excitable cells is critical to understanding the complex cellular networking within organs as well as the processes underlying many electro-physiological pathologies. Biopotential recording using an optical-electrode (optrode) is a novel approach which has potential to significantly improve interface-instrumentation impedance mismatching as recording contact-sizes become smaller and smaller. Optrodes incorporate a conductive interface that can sense extracellular potential and an underlying layer of liquid crystals that passively transduces electrical signals into measurable optical signals. This study investigates the impedance properties of this optical technology by varying the diameter of recording sites and observing the corresponding changes in the impedance values. The results show that the liquid crystals in this optrode platform exhibit input impedance values (1 M 100 G) that are three orders of magnitude higher than the corresponding interface impedance, which is appropriate for voltage sensing. The automatic scaling of the input impedance enabled within the optrode system maintains a relatively constant ratio between input and total system impedance of about one for sensing areas with diameters ranging from 40 m to 1 mm, at which the calculated signal loss is predicted to be <1%. This feature preserves the interface-transducer impedance ratio, regardless of the size of the recording site, allowing development of passive optrode arrays capable of very high spatial-resolution recordings.
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Rezaei AM, Stevens MC, Argha A, Mascheroni A, Puiatti A, Lovell NH. An Unobtrusive Fall Detection System Using Low Resolution Thermal Sensors and Convolutional Neural Networks. Annu Int Conf IEEE Eng Med Biol Soc 2021; 2021:6949-6952. [PMID: 34892702 DOI: 10.1109/embc46164.2021.9631059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Human activity recognition has many potential applications. In an aged care facility, it is crucial to monitor elderly patients and assist them in the case of falls or other needs. Wearable devices can be used for such a purpose. However, most of them have been proven to be obtrusive, and patients reluctate or forget to wear them. In this study, we used infrared technology to recognize certain human activities including sitting, standing, walking, laying in bed, laying down, and falling. We evaluated a system consisting of two 24×32 thermal array sensors. One infrared sensor was installed on side and another one was installed on the ceiling of an experimental room capturing the same scene. We chose side and overhead mounts to compare the performance of classifiers. We used our prototypes to collect data from healthy young volunteers while performing eight different scenarios. After that, we converted data coming from the sensors into images and applied a supervised deep learning approach. The scene was captured by a visible camera and the video from the visible camera was used as the ground truth. The deep learning network consisted of a convolutional neural network which automatically extracted features from infrared images. Overall average F1-score of all classes for the side mount was 0.9044 and for the overhead mount was 0.8893. Overall average accuracy of all classes for the side mount was 96.65% and for the overhead mount was 95.77%. Our results suggested that our infrared-based method not only could unobtrusively recognize human activities but also was reasonably accurate.
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Indraratna P, Magdy J, Li J, McVeigh J, Briggs N, Mamo A, Biswas U, Yu J, Lovell NH, Ooi S. Patterns and predictors of smartphone ownership in a cardiology inpatient population. Eur Heart J 2021. [DOI: 10.1093/eurheartj/ehab724.3111] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Introduction
Mobile health (mHealth) interventions have grown in popularity, particularly for chronic disease management. Uptake of these interventions depends on patient smartphone ownership.
Purpose
To examine the smartphone ownership rate among cardiac inpatients and identify the associated demographic factors.
Methods
Between February 2019 and March 2020, 565 patients were screened for potential enrolment in the TeleClinical Care (TCC) pilot study at two hospitals in Australia. All patients had an admission diagnosis of acute coronary syndrome or heart failure. Mobile phone ownership was documented at the time of screening. Retrospectively, each patient's electronic medical record was examined for: age, sex, primary diagnosis, suburb of residence, private health insurance subscription, smoking status and occupation. Continuous variables were analysed using a multinomial logistic regression model. Categorical variables were analysed using a generalised linear model.
Results
Mobile phone ownership was documented for 523 patients (92.6%). 60.6% of all patients owned smartphones, and 14.9% owned basic mobile phones. 24.5% of patients did not own any mobile phone. The average age of participants was 70.8 years. Smartphone ownership rates were high among patients in the 18–49 (96%), 50–59 (89%) and 60–69 (85%) year groups. The differences between these groups were not statistically significant. In the age group 70–79 years, however, smartphone ownership fell to 56.5% (p<0.001, figure 1). The relative risk (RR) of not owning a smartphone increased by 12% for each additional year of age. Overall, smartphone ownership was less more common in women than men [79/179 (44.1%) vs. 238/344 (69.2%), RR 0.78, 95% CI 0.67–0.91, P=0.003, age-adjusted) driven by a difference in patients aged 70 or above [36/131 (27.5%) vs. 82/168 (48.9%), RR 0.66, 95% 0.49–0.90, p<0.001]. After adjustment for age and sex, patients with a primary diagnosis of ACS were more likely to own a smartphone compared to those with HF [227/316 (71.8%) vs. 90/207 (43.5%), RR 1.22, 95% CI 1.04–1.43, P=0.015]. Patients with private health insurance were more likely to own a smartphone than those who were uninsured [68.9% (162/235) v 54.0% (154/285), RR 1.28, 95% CI 1.13–1.43, P<0.001, figure 2). Smartphone ownership was significantly higher in those who were currently working, compared to those who were retired (117/119, 98.3% vs. 56/87, 64.3%, RR 0.76, 95% CI 0.64 – 0.89, P=0.001), even after adjustment for age. Patients living in the region with lowest average household income had the lowest rate of smartphone ownership (52.4%). There was no significant difference in smartphone ownership based on type of occupation.
Conclusion
Smartphone ownership was common in this inpatient population. Patients who are older, female and of lower socioeconomic background are less likely to own smartphones, and future mHealth programs should be cognizant of this.
Funding Acknowledgement
Type of funding sources: Public hospital(s). Main funding source(s): Prince of Wales Hospital, Department of Cardiology Figure 1. Smartphone ownership by ageFigure 2. Insurance status
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Affiliation(s)
- P Indraratna
- Prince of Wales Hospital, Cardiology, Sydney, Australia
| | - J Magdy
- The Sutherland Hospital, Cardiology, Sydney, Australia
| | - J Li
- Prince of Wales Hospital, Cardiology, Sydney, Australia
| | - J McVeigh
- Prince of Wales Hospital, Cardiology, Sydney, Australia
| | - N Briggs
- University of New South Wales, Mark Wainwright Analytical Centre, Sydney, Australia
| | - A Mamo
- The Sutherland Hospital, Cardiology, Sydney, Australia
| | - U Biswas
- University of New South Wales, Graduate School of Biomedical Engineering, Sydney, Australia
| | - J Yu
- Prince of Wales Hospital, Cardiology, Sydney, Australia
| | - N H Lovell
- University of New South Wales, Graduate School of Biomedical Engineering, Sydney, Australia
| | - S Ooi
- Prince of Wales Hospital, Cardiology, Sydney, Australia
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Indraratna P, Biswas U, McVeigh J, Mamo A, Magdy J, Briggs N, Gallgher R, Ferry C, Jan S, Schreier G, Redmond S, Loh E, Yu J, Lovell NH, Ooi S. A randomised control trial of TeleClinical Care – a smartphone-app based model of care for heart failure and acute coronary syndromes. Eur Heart J 2021. [DOI: 10.1093/eurheartj/ehab724.3083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Background
Acute coronary syndrome (ACS) and heart failure (HF) are frequent causes of hospitalisation and readmissions. A novel smartphone app-based model of care (TeleClinical Care – TCC) was developed to support patients after ACS or HF admission.
Purpose
This randomised control trial aimed to characterise both the intervention and clinical outcomes. The primary endpoint was the incidence of 30-day readmissions. Secondary endpoints included six-month cardiac and all-cause readmissions, mortality, major adverse cardiovascular events (MACE), cardiac rehabilitation (CR) completion, medication adherence, serum low-density lipoprotein (LDL-C), quality of life, blood pressure, body mass index, waist circumference and six-minute walk distance. Additionally, cost-effectiveness and user satisfaction were evaluated.
Methods
Patients were randomised 1:1 to either TCC plus usual care or usual care alone and were followed-up at six months. Intervention arm participants received the TCC app and were asked to use Bluetooth-enabled devices for measuring weight, heart rate, blood pressure and physical activity daily. Readings were automatically transmitted to the patient's smartphone and a secure web-server (KIOLA). Customisable thresholds for each parameter were defined at discharge. Abnormal readings were flagged by email to a monitoring team, who discussed management with the patient's usual healthcare providers. The app also provided educational push notifications.
Results
164 patients from two hospitals in Sydney, Australia were enrolled between February 2019 and March 2020 (TCC n=81, control n=83). Recruitment ceased during the COVID-19 pandemic. The mean age was 61.5 years. 79% of patients were male. The per-patient mean percentage of days with data transmission was 64.2±27.5%. 565 alerts were received, 16% of which resulted in additional investigations, healthcare consultation or a change in management. There was no difference in 30-day readmission rate (11 readmissions in each arm). There was a significant difference in six-month readmissions, favouring the intervention (21 vs. 41 readmissions, HR=0.40, 95% CI 0.16–0.95, P=0.03), driven by a reduction in cardiac readmissions (11 vs. 25, HR=0.51, 95% CI 0.27–0.94, P=0.03). Use of TCC was associated with improved CR completion (39% vs. 18%, P=0.025) and medication adherence (75% vs. 50%, P=0.002). There was no significant difference in mortality, MACE, LDL-C, quality of life or any of the physical parameters. The average user rating was 4.56 out of 5. The study cost EUR 4015 per readmission saved. Upon modelling, it was calculated that if the number of enrolled patients exceeds 243, total expenditure will be overcome by cost savings from reducing readmissions.
Conclusion
The TCC model of care was feasible and safe. In this study, clinical benefits were demonstrated including a reduction in six-month readmissions, improved CR completion and improved medication adherence.
Funding Acknowledgement
Type of funding sources: Public hospital(s). Main funding source(s): Department of Cardiology, Prince of Wales HospitalPrince of Wales Hospital Foundation Figure 1. TCC interfaceFigure 2. Cumulative readmissions over the course of the trial
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Affiliation(s)
- P Indraratna
- Prince of Wales Hospital, Cardiology, Sydney, Australia
| | - U Biswas
- University of New South Wales, Graduate School of Biomedical Engineering, Sydney, Australia
| | - J McVeigh
- Prince of Wales Hospital, Cardiology, Sydney, Australia
| | - A Mamo
- The Sutherland Hospital, Cardiology, Sydney, Australia
| | - J Magdy
- The Sutherland Hospital, Cardiology, Sydney, Australia
| | - N Briggs
- University of New South Wales, Mark Wainwright Analytical Centre, Sydney, Australia
| | - R Gallgher
- University of Sydney, Faculty of Medicine and Health, Sydney, Australia
| | - C Ferry
- Heart Foundation, Sydney, Australia
| | - S Jan
- The George Institute for Global Health, Sydney, Australia
| | - G Schreier
- Austrian Institute of Technology, Graz, Austria
| | - S Redmond
- University College Dublin, School of Electrical and Electronic Engineering, Dublin, Ireland
| | - E Loh
- The Sutherland Hospital, Cardiology, Sydney, Australia
| | - J Yu
- Prince of Wales Hospital, Cardiology, Sydney, Australia
| | - N H Lovell
- University of New South Wales, Graduate School of Biomedical Engineering, Sydney, Australia
| | - S Ooi
- Prince of Wales Hospital, Cardiology, Sydney, Australia
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Indraratna P, Biswas U, Liu H, Lovell NH, Ooi S. Process evaluation of the TeleClinical Care pilot study. Eur Heart J 2021. [DOI: 10.1093/eurheartj/ehab724.3100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Abstract
Background
A novel smartphone app-based model of care (TeleClinical Care – TCC) for patients with acute coronary syndrome (ACS) and heart failure (HF) was evaluated in a two-site, pilot randomised control trial of 164 participants in Australia. The trial demonstrated improvements in readmission rates, cardiac rehabilitation completion and medication compliance for participants in the intervention arm.
Purpose
A process evaluation was designed with the aims of identifying contextual factors and mechanisms that influenced the results of the trial, as well as identifying methods of improving site and participant recruitment and the delivery of the intervention, for a planned larger effectiveness trial of over 1000 patients across the state of New South Wales (TCC-Cardiac).
Methods
Multiple data sources were used in this mixed-methods process evaluation including interviews with four TCC team members, three general practitioners and three cardiologists. Cardiac rehabilitation completion (CR) rates, heart failure outreach service (HFOS) referrals and cardiologist follow-up appointments were audited. A patient questionnaire was also analysed for evidence of improved self-care as a mechanism of benefit of the TCC app.
Results
Several factors were identified that influenced the success of the trial. Rates of HFOS referral and cardiologist follow-up were high in both arms, and were not significantly different. Team members were largely positive towards their introduction into the trial, but highlighted several factors that could be optimised for the TCC-Cardiac trial, namely streamlining of the enrolment process and improving the reach of the trial, by maximising the screening of potential participants. In their interviews, the GPs and cardiologists viewed the intervention favourably in regard to potential benefit of closely monitoring, and responding to abnormalities in their patients. Several factors were suggested to be optimised prior to the commencement of TCC-Cardiac, such as additional workload and delineation of which party was responsible for alert management. Several patients commented on improved self-management as a result of TCC participation.
Discussion
The TCC trial was successful with the results likely influenced by high rates of follow-up from HFOS and cardiologists. Improved self-care likely drove several benefits including higher engagement with cardiac rehabilitation. The conduct and delivery TCC-Cardiac will be improved by extending recruitment to patients in non-cardiac wards, ensuring team members have adequate time (>15 hours per week) to optimise recruitment, establishing the responsibilities of GPs and cardiologists as part of the model and provision of summary data to them.
Funding Acknowledgement
Type of funding sources: Public hospital(s). Main funding source(s): Prince of Wales Hospital
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Affiliation(s)
- P Indraratna
- Prince of Wales Hospital, Cardiology, Sydney, Australia
| | - U Biswas
- University of New South Wales, Graduate School of Biomedical Engineering, Sydney, Australia
| | - H Liu
- The George Institute for Global Health, Sydney, Australia
| | - N H Lovell
- University of New South Wales, Graduate School of Biomedical Engineering, Sydney, Australia
| | - S Ooi
- University of New South Wales, Graduate School of Biomedical Engineering, Sydney, Australia
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Lv M, Li W, Tao R, H Lovell N, Yang Y, Tu T, Li W. Spatial-Spectral Density Peaks-Based Discriminant Analysis for Membranous Nephropathy Classification Using Microscopic Hyperspectral Images. IEEE J Biomed Health Inform 2021; 25:3041-3051. [PMID: 33434138 DOI: 10.1109/jbhi.2021.3050483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
The traditional differential diagnosis of membranous nephropathy (MN) mainly relies on clinical symptoms, serological examination and optical renal biopsy. However, there is a probability of false positives in the optical inspection results, and it is unable to detect the change of biochemical components, which poses an obstacle to pathogenic mechanism analysis. Microscopic hyperspectral imaging can reveal detailed component information of immune complexes, but the high dimensionality of microscopic hyperspectral image brings difficulties and challenges to image processing and disease diagnosis. In this paper, a novel classification framework, including spatial-spectral density peaks-based discriminant analysis (SSDP), is proposed for intelligent diagnosis of MN using a microscopic hyperspectral pathological dataset. SSDP constructs a set of graphs describing intrinsic structure of MHSI in both spatial and spectral domains by employing density peak clustering. In the process of graph embedding, low-dimensional features with important diagnostic information in the immune complex are obtained by compacting the spatial-spectral local intra-class pixels while separating the spectral inter-class pixels. For the MN recognition task, a support vector machine (SVM) is used to classify pixels in the low-dimensional space. Experimental validation data employ two types of MN that are difficult to distinguish with optical microscope, including primary MN and hepatitis B virus-associated MN. Experimental results show that the proposed SSDP achieves a sensitivity of 99.36%, which has potential clinical value for automatic diagnosis of MN.
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Thai MT, Phan PT, Hoang TT, Low H, Lovell NH, Do TN. Design, Fabrication, and Hysteresis Modeling of Soft Microtubule Artificial Muscle (SMAM) for Medical Applications. IEEE Robot Autom Lett 2021. [DOI: 10.1109/lra.2021.3072599] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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Abstract
Development of cardiac multiphysics models has progressed significantly over the decades and simulations combining multiple physics interactions have become increasingly common. In this review, we summarise the progress in this field focusing on various approaches of integrating ventricular structures. electrophysiological properties, myocardial mechanics, as well as incorporating blood hemodynamics and the circulatory system. Common coupling approaches are discussed and compared, including the advantages and shortcomings of each. Currently used strategies for patient-specific implementations are highlighted and potential future improvements considered.
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Weerasinghe NH, Lovell NH, Welsh AW, Stevenson GN. Multi-Parametric Fusion of 3D Power Doppler Ultrasound for Fetal Kidney Segmentation Using Fully Convolutional Neural Networks. IEEE J Biomed Health Inform 2021; 25:2050-2057. [PMID: 32991292 DOI: 10.1109/jbhi.2020.3027318] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Kidney development is key to the long-term health of the fetus. Renal volume and vascularity assessed by 3D ultrasound (3D-US) are known markers of wellbeing, however, a lack of real-time image segmentation solutions preclude these measures being used in a busy clinical environment. In this work, we aimed to automate kidney segmentation using fully convolutional neural networks (fCNNs). We used multi-parametric input fusion incorporating 3D B-Mode and power Doppler (PD) volumes, aiming to improve segmentation accuracy. Three different fusion strategies and their performance were assessed versus a single input (B-Mode) network. Early input-level fusion provided the best segmentation accuracy with an average Dice similarity coefficient (DSC) of 0.81 and Hausdorff distance (HD) of 8.96 mm, an improvement of 0.06 DSC and reduction of 1.43 mm HD compared to our baseline network. Compared to manual segmentation for all models, repeatability was assessed by intra-class correlation coefficients (ICC) indicating good to excellent reproducibility (ICC 0.93). The framework was extended to support multiple graphics processing units (GPUs) to better handle volumetric data, dense fCNN models, batch normalization and complex fusion networks. This work and available source code provides a framework to increase the parameter space of encoder-decoder style fCNNs across multiple GPUs and shows that application of multi-parametric 3D-US in fCNN training improves segmentation accuracy.
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Indraratna P, Biswas U, Yu J, Schreier G, Ooi SY, Lovell NH, Redmond SJ. Trials and Tribulations: mHealth Clinical Trials in the COVID-19 Pandemic. Yearb Med Inform 2021; 30:272-279. [PMID: 33882601 PMCID: PMC8416217 DOI: 10.1055/s-0041-1726487] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
Abstract
INTRODUCTION Mobile phone-based interventions in cardiovascular disease are growing in popularity. A randomised control trial (RCT) for a novel smartphone app-based model of care, named TeleClinical Care - Cardiac (TCC-Cardiac), commenced in February 2019, targeted at patients being discharged after care for an acute coronary syndrome or episode of decompensated heart failure. The app was paired to a digital sphygmomanometer, weighing scale and a wearable fitness band, all loaned to the patient, and allowed clinicians to respond to abnormal readings. The onset of the COVID-19 pandemic necessitated several modifications to the trial in order to protect participants from potential exposure to infection. The use of TCC-Cardiac during the pandemic inspired the development of a similar model of care (TCC-COVID), targeted at patients being managed at home with a diagnosis of COVID-19. METHODS Recruitment for the TCC-Cardiac trial was terminated shortly after the World Health Organization announced COVID-19 as a global pandemic. Telephone follow-up was commenced, in order to protect patients from unnecessary exposure to hospital staff and patients. Equipment was returned or collected by a 'no-contact' method. The TCC-COVID app and model of care had similar functionality to the original TCC-Cardiac app. Participants were enrolled exclusively by remote methods. Oxygen saturation and pulse rate were measured by a pulse oximeter, and symptomatology measured by questionnaire. Measurement results were manually entered into the app and transmitted to an online server for medical staff to review. RESULTS A total of 164 patients were involved in the TCC-Cardiac trial, with 102 patients involved after the onset of the pandemic. There were no hospitalisations due to COVID-19 in this cohort. The study was successfully completed, with only three participants lost to follow-up. During the pandemic, 5 of 49 (10%) of patients in the intervention arm were readmitted compared to 12 of 53 (23%) in the control arm. Also, in this period, 28 of 29 (97%) of all clinically significant alerts received by the monitoring team were managed successfully in the outpatient setting, avoiding hospitalisation. Patients found the user experience largely positive, with the average rating for the app being 4.56 out of 5. 26 patients have currently been enrolled for TCC-COVID. Recruitment is ongoing. All patients have been safely and effectively monitored, with no major adverse clinical events or technical malfunctions. Patient satisfaction has been high. CONCLUSION The TCC-Cardiac RCT was successfully completed despite the challenges posed by COVID-19. Use of the app had an added benefit during the pandemic as participants could be monitored safely from home. The model of care inspired the development of an app with similar functionality designed for use with patients diagnosed with COVID-19.
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Affiliation(s)
- Praveen Indraratna
- Department of Cardiology, Prince of Wales Hospital, Sydney, Australia.,Prince of Wales Clinical School, The University of New South Wales, Sydney, Australia
| | - Uzzal Biswas
- Graduate School of Biomedical Engineering, The University of New South Wales, Sydney, Australia
| | - Jennifer Yu
- Department of Cardiology, Prince of Wales Hospital, Sydney, Australia.,Prince of Wales Clinical School, The University of New South Wales, Sydney, Australia
| | - Guenter Schreier
- AIT Austrian Institute of Technology, Center for Health and Bioresources, Graz, Austria
| | - Sze-Yuan Ooi
- Department of Cardiology, Prince of Wales Hospital, Sydney, Australia.,Prince of Wales Clinical School, The University of New South Wales, Sydney, Australia
| | - Nigel H Lovell
- Graduate School of Biomedical Engineering, The University of New South Wales, Sydney, Australia
| | - Stephen J Redmond
- Graduate School of Biomedical Engineering, The University of New South Wales, Sydney, Australia.,School of Electrical and Electronic Engineering, University College Dublin, Dublin, Ireland
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Argha A, Celler BG, Lovell NH. A Novel Automated Blood Pressure Estimation Algorithm Using Sequences of Korotkoff Sounds. IEEE J Biomed Health Inform 2021; 25:1257-1264. [PMID: 32750976 DOI: 10.1109/jbhi.2020.3012567] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
The use of automated non-invasive blood pressure (NIBP) measurement devices is growing, as they can be used without expertise, and BP measurement can be performed by patients at home. Non-invasive cuff-based monitoring is the dominant method for BP measurement. While the oscillometric technique is most common, a few automated NIBP measurement methods have been developed based on the auscultatory technique. Amongst artificial intelligence (AI) techniques, deep learning has received increasing attention in different fields due to its strength in data classification, and feature extraction problems. This paper proposes a novel automated AI-based technique for NIBP estimation from auscultatory waveforms (AWs) based on converting the NIBP estimation problem to a sequence-to-sequence classification problem. To do this, a sequence of segments was first formed by segmenting the AWs, and their corresponding decomposed detail, and approximation parts obtained by wavelet packet decomposition method, and extracting features from each segment. Then, a label was assigned to each segment, i.e. (i) between systolic, and diastolic segments, and (ii) otherwise, and a bidirectional long short term memory recurrent neural network (BiLSTM-RNN) was devised to solve the resulting sequence-to-sequence classification problem. Adopting a 5-fold cross-validation scheme, and using a data base of 350 NIBP recordings gave an average mean absolute error of 1.7±3.7 mmHg for systolic BP (SBP), and 3.4 ±5.0 mmHg for diastolic BP (DBP) relative to reference values. Based on the results achieved, and comparisons made with the existing literature, it is concluded that the proposed automated BP estimation algorithm based on deep learning methods, and auscultatory waveform brings plausible benefits to the field of BP estimation.
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Ji N, Xiang T, Bonato P, Lovell NH, Ooi SY, Clifton DA, Akay M, Ding XR, Yan BP, Mok V, Fotiadis DI, Zhang YT. Recommendation to Use Wearable-Based mHealth in Closed-Loop Management of Acute Cardiovascular Disease Patients During the COVID-19 Pandemic. IEEE J Biomed Health Inform 2021; 25:903-908. [PMID: 33596179 PMCID: PMC8545171 DOI: 10.1109/jbhi.2021.3059883] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Revised: 02/10/2021] [Accepted: 02/13/2021] [Indexed: 11/08/2022]
Abstract
Because of the rapid and serious nature of acute cardiovascular disease (CVD) especially ST segment elevation myocardial infarction (STEMI), a leading cause of death worldwide, prompt diagnosis and treatment is of crucial importance to reduce both mortality and morbidity. During a pandemic such as coronavirus disease-2019 (COVID-19), it is critical to balance cardiovascular emergencies with infectious risk. In this work, we recommend using wearable device based mobile health (mHealth) as an early screening and real-time monitoring tool to address this balance and facilitate remote monitoring to tackle this unprecedented challenge. This recommendation may help to improve the efficiency and effectiveness of acute CVD patient management while reducing infection risk.
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Affiliation(s)
- Nan Ji
- Department of Biomedical EngineeringCity University of Hong KongHong Kong999077China
| | - Ting Xiang
- Department of Biomedical EngineeringCity University of Hong KongHong Kong999077China
| | - Paolo Bonato
- Department of Physical Medicine and RehabilitationHarvard Medical SchoolBostonMA02115USA
| | - Nigel H. Lovell
- Graduate School of Biomedical EngineeringUniversity of New South WalesSydneyNSW2052Australia
| | - Sze-Yuan Ooi
- Department of Cardiology, Prince of Wales Clinical School, School of MedicineUniversity of New South WalesSydneyNSW2052Australia
| | - David A. Clifton
- Department of Engineering ScienceUniversity of OxfordOxfordOX1 2JDU.K.
| | - Metin Akay
- Department of Biomedical EngineeringUniversity of HoustonHoustonTX77204USA
| | - Xiao-Rong Ding
- School of Life Science and TechnologyUniversity of Electronic Science and Technology of ChinaChengdu611731China
| | - Bryan P. Yan
- Heart & Vascular InstituteDivision of Cardiology, Department of Medicine and Therapeutics, Faculty of Medicine Chinese University of Hong KongHong Kong999077China
| | - Vincent Mok
- Lui Che Woo Institute of Innovative Medicine, Division of Neurology, Department of Medicine and Therapeutics, Prince of Wales Hospital, Faculty of MedicineThe Chinese University of Hong KongHong Kong999077China
| | - Dimitrios I. Fotiadis
- Department of Biomedical ResearchInstitute of Molecular Biology and Biotechnology FORTHIoanninaGreece
- Department of Materials Science and Engineering, Unit of Medical Technology and Intelligent Information SystemsUniversity of Ioannina45110IoanninaGreece
| | - Yuan-Ting Zhang
- Hong Kong Center for Cerebro-cardiovascular Health Engineering (COCHE) at Hong Kong Science and Technology ParkDepartment of Biomedical Engineering at City University of Hong KongHong Kong999077China
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