1
|
Mondal S, Mor A, Reddy IJ, Nandi S, Gupta PSP. Effect of heat exposure on prostaglandin production and expression of COX-2, PGES, PGFS, ITGAV and LGALS15 mRNAs in endometrial epithelial cells of buffalo (Bubalus bubalis). Mol Biol Rep 2024; 51:405. [PMID: 38457014 DOI: 10.1007/s11033-024-09361-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2023] [Accepted: 02/16/2024] [Indexed: 03/09/2024]
Abstract
BACKGROUND Early embryonic mortality is one of the major intriguing factors of reproductive failure that causes considerable challenge to the mammalian cell biologists. Heat stress is the major factor responsible for reduced fertility in farm animals. The present study aimed to investigate the influence of heat stress on prostaglandin production and the expression of key genes, including COX-2, PGES, PGFS, ITGAV and LGALS15, in buffalo endometrial epithelial cells. METHODS AND RESULTS Buffalo genitalia containing ovaries with corpus luteum (CL) were collected immediately post-slaughter. The stages of the estrous cycle were determined based on macroscopic observations of the ovaries. Uterine lumens of the mid-luteal phase (days 6-10 of the estrous cycle) were washed and treated with trypsin to isolate epithelial cells, which were then cultured at control temperature (38.5 °C for 24 h) or exposed to elevated temperatures [38.5 °C for 6 h, 40.5 °C for 18 h; Heat Stressed (HS)]. The supernatant and endometrial epithelial cells were collected at various time points (0, 3, 6, 12, and 24 h) from both the control and treatment groups. Although heat stress (40.5 °C) significantly (P < 0.05) increased COX-2, PGES, and PGFS transcripts in epithelial cells but it did not affect the in vitro production of PGF2α and PGE2. The expression of ITGAV and LGALS15 mRNAs in endometrial epithelial cells remained unaltered under elevated temperature conditions. CONCLUSION It can be concluded that elevated temperature did not directly modulate prostaglandin production but, it promoted the expression of COX-2, PGES and PGFS mRNA in buffalo endometrial epithelial cells.
Collapse
Affiliation(s)
- S Mondal
- ICAR-National Institute of Animal Nutrition and Physiology, Adugodi, Bangalore, Karnataka, 560 030, India.
| | - A Mor
- ICAR-National Institute of Animal Nutrition and Physiology, Adugodi, Bangalore, Karnataka, 560 030, India
| | - I J Reddy
- ICAR-National Institute of Animal Nutrition and Physiology, Adugodi, Bangalore, Karnataka, 560 030, India
| | - S Nandi
- ICAR-National Institute of Animal Nutrition and Physiology, Adugodi, Bangalore, Karnataka, 560 030, India
| | - P S P Gupta
- ICAR-National Institute of Animal Nutrition and Physiology, Adugodi, Bangalore, Karnataka, 560 030, India
| |
Collapse
|
2
|
Nandi S, Kumar B S, Gupta PSP, Mondal S, Kumar VG. Influence of phenolic flavonols (Kaempferol, Querectin and Myricetin) on the survival and growth of ovine preantral follicles and granulosa cells cultured in vitro. Theriogenology 2024; 214:266-272. [PMID: 37948816 DOI: 10.1016/j.theriogenology.2023.10.023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Revised: 09/01/2023] [Accepted: 10/16/2023] [Indexed: 11/12/2023]
Abstract
Study was carried out to examine the influence of plant bioactive compounds [Kaempferol (KAE), Querectin (QUE) and Myricetin (MYR)] on the survival and growth parameters of cultured ovine preantral follicles (PFs) granulosa cells (GCs) and expression of some key developmental genes. Ovine PFs were isolated from slaughterhouse derived ovaries and KAE, QUE and MYR were supplemented to the standard culture medium of GCs and PFs at concentrations of 0, 5, 10, 25, 50 and 100 μM and cultured for 5 and 7 days respectively. PFs morphological and functional parameters [follicle and enclosed oocyte growth rate, viability of follicles, antrum formation rate, oocyte maturation rate, estradiol concentration, reactive oxygen species (ROS) production] and GC growth parameters (metabolic activity, viability rate, cell number increment, ROS production) were measured after culture. Significantly higher PF growth, viability rate and estradiol concentration was observed at 10 μM, 25 μM and 10 μM concentration of KAE, MYR and QUE respectively compared to the control. ROS production was significantly decreased in the PF culture media treated with 10 μM KAE or MYR 25 μM or 10 μM QUE compared to those observed in the control group. Likewise, metabolic activity of GCs, viability rate and cell number increment cultured with KAE, MYR and QUE was significantly higher at 10, 25 and 10 μM concentrations respectively compared to those observed in control group. ROS production was significantly lower in the GC cultured with KAE, MYR and QUE at 10, 25 and 10 μM concentrations respectively compared to the control. Based on the results of the growth parameters, gene expression of PFs and GCs were studied by qPCR at selected concentrations (KAE, MYR and QUE at 10, 25 and 10 μM concentrations respectively) in the cultured PFs and GCs. Gene expression of GDF9, FGF2, CYP19A1 was significantly higher and Bax, Bcl2 expression was significantly lower in the PFs and GCs cultured with the KAE or QUE at 10 μM concentration. KAE, MYR and QUE have dose dependant responses on PFs and GCs morphological and functional parameters; however, KAE is more potent amongst the three in augmenting the ovarian functions.
Collapse
Affiliation(s)
- S Nandi
- ICAR-National Institute of Animal Nutrition and Physiology, Bangalore, India.
| | - Sampath Kumar B
- ICAR-National Institute of Animal Nutrition and Physiology, Bangalore, India; Veterinary College, Bangalore Campus, Hebbal, Bangalore, India
| | - P S P Gupta
- ICAR-National Institute of Animal Nutrition and Physiology, Bangalore, India
| | - S Mondal
- ICAR-National Institute of Animal Nutrition and Physiology, Bangalore, India
| | - V Girish Kumar
- Veterinary College, Bangalore Campus, Hebbal, Bangalore, India
| |
Collapse
|
3
|
Kimi R, Beegum M, Nandi S, Dubal ZB, Sinha DK, Singh BR, Vinodhkumar OR. Spatio-temporal dynamics and distributional trend analysis of African swine fever outbreaks (2020-2021) in North-East India. Trop Anim Health Prod 2024; 56:39. [PMID: 38206527 DOI: 10.1007/s11250-023-03883-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2023] [Accepted: 11/21/2023] [Indexed: 01/12/2024]
Abstract
African swine fever (ASF) is a highly contagious, notifiable, and fatal hemorrhagic viral disease affecting domestic and wild pigs. The disease was reported for the first time in India during 2020, resulted in serious outbreaks and economic loss in North-Eastern (NE) parts, since 47% of the Indian pig population is distributed in the NE region. The present study focused on analyzing the spatial autocorrelation, spatio-temporal patterns, and directional trend of the disease in NE India during 2020-2021. The ASF outbreak data (2020-2021) were collected from the offices of the Department of Animal Husbandry and Veterinary Services in seven NE states of India to identify the potential clusters, spatio-temporal aggregation, temporal distribution, disease spread, density maps, and risk zones. Between 2020 and 2021, a total of 321 ASF outbreaks were recorded, resulting in 59,377 deaths. The spatial pattern analysis of the outbreak data (2020-2021) revealed that ASF outbreaks were clustered in 2020 (z score = 2.20, p < .01) and 2021 (z score = 4.89, p < .01). Spatial autocorrelation and Moran's I value (0.05-0.06 in 2020 and 2021) revealed the spatial clustering and spatial relationship between the outbreaks. The hotspot analysis identified districts of Arunachal Pradesh, Assam and districts of Mizoram, Tripura as significant hotspots in 2020 and 2021, respectively. The spatial-scan statistics with a purely spatial and purely temporal analysis revealed six and one significant clusters, respectively. Retrospective unadjusted, temporal, and spatially adjusted space-time analysis detected five, five, and two statistically significant (p < .01) clusters, respectively. The directional trend analysis identified the direction of disease distribution as northeast-southwest (2020) and north-south (2021), indicate the possibility of ASF introduction to India from China. The high-risk zones and spatio-temporal pattern of ASF outbreaks identified in the present study can be used as a guide for deploying proper prevention, optimizing resource allocation and disease control measures in NE Indian states.
Collapse
Affiliation(s)
- Rotluang Kimi
- Division of Epidemiology, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, Uttar Pradesh, India
| | - Mufeeda Beegum
- Division of Epidemiology, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, Uttar Pradesh, India
| | - S Nandi
- CADRAD, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, India
| | - Z B Dubal
- Division of Veterinary Public Health, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, India
| | - D K Sinha
- Division of Epidemiology, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, Uttar Pradesh, India
| | - B R Singh
- Division of Epidemiology, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, Uttar Pradesh, India
| | - Obli Rajendran Vinodhkumar
- Division of Epidemiology, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, Uttar Pradesh, India.
| |
Collapse
|
4
|
Zhao M, Chauhan P, Sherman CA, Singh A, Kaileh M, Mazan-Mamczarz K, Ji H, Joy J, Nandi S, De S, Zhang Y, Fan J, Becker KG, Loke P, Zhou W, Sen R. NF-κB subunits direct kinetically distinct transcriptional cascades in antigen receptor-activated B cells. Nat Immunol 2023; 24:1552-1564. [PMID: 37524800 PMCID: PMC10457194 DOI: 10.1038/s41590-023-01561-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Accepted: 06/15/2023] [Indexed: 08/02/2023]
Abstract
The nuclear factor kappa B (NF-κB) family of transcription factors orchestrates signal-induced gene expression in diverse cell types. Cellular responses to NF-κB activation are regulated at the level of cell and signal specificity, as well as differential use of family members (subunit specificity). Here we used time-dependent multi-omics to investigate the selective functions of Rel and RelA, two closely related NF-κB proteins, in primary B lymphocytes activated via the B cell receptor. Despite large numbers of shared binding sites genome wide, Rel and RelA directed kinetically distinct cascades of gene expression in activated B cells. Single-cell RNA sequencing revealed marked heterogeneity of Rel- and RelA-specific responses, and sequential binding of these factors was not a major mechanism of protracted transcription. Moreover, nuclear co-expression of Rel and RelA led to functional antagonism between the factors. By rigorously identifying the target genes of each NF-κB subunit, these studies provide insights into exclusive functions of Rel and RelA in immunity and cancer.
Collapse
Affiliation(s)
- Mingming Zhao
- Gene Regulation Section, Laboratory of Molecular Biology and Immunology, National Institute on Aging, Baltimore, MD, USA
- Type 2 Immunity Section, Laboratory of Parasitic Diseases National Institute of Allergy and Infectious Diseases, Bethesda, MD, USA
| | - Prashant Chauhan
- Gene Regulation Section, Laboratory of Molecular Biology and Immunology, National Institute on Aging, Baltimore, MD, USA
| | - Cheryl A Sherman
- Gene Regulation Section, Laboratory of Molecular Biology and Immunology, National Institute on Aging, Baltimore, MD, USA
| | - Amit Singh
- Gene Regulation Section, Laboratory of Molecular Biology and Immunology, National Institute on Aging, Baltimore, MD, USA
| | - Mary Kaileh
- Gene Regulation Section, Laboratory of Molecular Biology and Immunology, National Institute on Aging, Baltimore, MD, USA
| | - Krystyna Mazan-Mamczarz
- Computational Biology and Genomics Core, Laboratory of Genetics and Genomics, National Institute on Aging, Baltimore, MD, USA
| | - Hongkai Ji
- Department of Biostatistics, Johns Hopkins University Bloomberg School of Public Health, Baltimore, MD, USA
| | - Jaimy Joy
- Gene Regulation Section, Laboratory of Molecular Biology and Immunology, National Institute on Aging, Baltimore, MD, USA
| | - Satabdi Nandi
- Gene Regulation Section, Laboratory of Molecular Biology and Immunology, National Institute on Aging, Baltimore, MD, USA
| | - Supriyo De
- Computational Biology and Genomics Core, Laboratory of Genetics and Genomics, National Institute on Aging, Baltimore, MD, USA
| | - Yongqing Zhang
- Computational Biology and Genomics Core, Laboratory of Genetics and Genomics, National Institute on Aging, Baltimore, MD, USA
| | - Jinshui Fan
- Computational Biology and Genomics Core, Laboratory of Genetics and Genomics, National Institute on Aging, Baltimore, MD, USA
| | - Kevin G Becker
- Computational Biology and Genomics Core, Laboratory of Genetics and Genomics, National Institute on Aging, Baltimore, MD, USA
| | - Png Loke
- Type 2 Immunity Section, Laboratory of Parasitic Diseases National Institute of Allergy and Infectious Diseases, Bethesda, MD, USA
| | - Weiqiang Zhou
- Department of Biostatistics, Johns Hopkins University Bloomberg School of Public Health, Baltimore, MD, USA
| | - Ranjan Sen
- Gene Regulation Section, Laboratory of Molecular Biology and Immunology, National Institute on Aging, Baltimore, MD, USA.
| |
Collapse
|
5
|
Kaushik K, Krishna K, Johnson P, Gupta PSP, Nandi S, Mondal SS, Suganthi RU, Nikhil Kumar Tej J. Effect of α-Tocopherol in the vitrification medium on the viability, lipid peroxidation, expression of key developmental, apoptotic and stress-related genes in ovine secondary follicles. Reprod Domest Anim 2023. [PMID: 37086264 DOI: 10.1111/rda.14364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Revised: 03/24/2023] [Accepted: 04/19/2023] [Indexed: 04/23/2023]
Abstract
The present study aimed to evaluate the effect of α-tocopherol on viability, lipid peroxidation, and the expression of apoptosis, stress, and development related genes in the vitrified sheep secondary follicles. Ovarian secondary follicles (200-300 μm) were isolated and distributed separately to the vitrification treatment and supplemented with 5 mM, 10 mM, 20 mM and 30 mM of α-tocopherol (while the control fresh group was without vitrification and supplementation of α-tocopherol). After a week, the follicles were thawed and evaluated for follicular viability by trypan blue dye exclusion method, lipid peroxidation and gene expression studies. The results showed that the vitrification with 10 and 20 mM of α-tocopherol positively affected (P<0.05) the viability of vitrified follicles in comparison with vitrified ones without α-tocopherol but the higher concentration of α-tocopherol, i.e., 30 mM negatively affected the viability (P<0.05) in comparison with the 10 and 20 mM of α-tocopherol groups. The malondialdehyde (MDA) levels were significantly (P<0.05) higher in the vitrified without α-tocopherol group in comparison to the vitrified with 20 mM of α-tocopherol group. The expression of apoptotic-related gene, BCL2L1 was significantly higher in 10 mM α-tocopherol group compared to the control fresh and CASPASE 3, 9 expressions were significantly higher in the vitrified group when compared to the vitrified with 10 mM α-tocopherol group. Expressions of BAX, BAD, BAK, BMP-15 and GDF-9 showed no significant difference among the groups. The mRNA expression of SOD1 was significantly higher in the vitrified without α-tocopherol group when compared to other groups. We conclude that the supplementation of 10 and 20 mM α-tocopherol in vitrification solution was the efficient vitrification procedure for the vitrification of ovine secondary follicles.
Collapse
Affiliation(s)
- Kalpana Kaushik
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, Karnataka, India
- Department of Biotechnology, Jain University, Bengaluru, Karnataka, India
| | - Kavya Krishna
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, Karnataka, India
| | - P Johnson
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, Karnataka, India
| | - P S P Gupta
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, Karnataka, India
| | - S Nandi
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, Karnataka, India
| | - S S Mondal
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, Karnataka, India
| | - R U Suganthi
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, Karnataka, India
| | - J Nikhil Kumar Tej
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, Karnataka, India
| |
Collapse
|
6
|
Tripathi SK, Nandi S, Gupta PSP, Mondal S. Antioxidants supplementation improves the quality of in vitro produced ovine embryos with amendments in key development gene expressions. Theriogenology 2023; 201:41-52. [PMID: 36827868 DOI: 10.1016/j.theriogenology.2022.11.048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Revised: 11/30/2022] [Accepted: 11/30/2022] [Indexed: 12/12/2022]
Abstract
The present study assessed the effects of supplementation of different antioxidants on oocyte maturation, embryo production, reactive oxygen species (ROS) production and expression of key developmental genes. In this study, using ovine as an animal model, we tested the hypothesis that antioxidant supplementation enhanced the developmental competence of oocytes. Ovine oocytes aspirated from local abattoir-derived ovaries were subjected to IVM with different concentrations of antioxidants [(Melatonin, Ascorbic acid (Vit C), alpha-tocopherol (Vit E), Sodium selenite (SS)]. Oocytes matured without any antioxidant supplementation were used as controls. The oocytes were assessed for maturation rates and ROS levels. Further, embryo production rates in terms of cleavage, blastocysts and total cell numbers were evaluated after performing in vitro fertilization. Real-Time PCR analysis was used to evaluate the expression of stress related gene (SOD-1), growth related (GDF-9, BMP-15), and apoptosis-related genes (BCL-2 and BAX). We observed that maturation rates were significantly higher in alpha-tocopherol (100 μM; 92.4%) groups followed by melatonin (30 μM; 89.1%) group. However, blastocyst rates in ascorbic acid (100 μM; 19.5%), melatonin (30 μM; 18.4%), alpha-tocopherol (100 μM; 18.2%), and sodium selenite (20 μM; 16.9%) groups were significantly higher (P 0.05) than that observed in the control groups. Total cell numbers in blastocysts in the melatonin, ascorbic acid and alpha-tocopherol groups were significantly higher than those observed in sodium selenite and control groups. ROS production was reduced in groups treated with melatonin (30 μM), vitamin C (100 μM), sodium selenite (20 μM) and α-tocopherol (200 μM) compared with that observed in the control group. Supplementation of antioxidants caused the alterations in mRNA expression of growth, stress, and apoptosis related gene expression in matured oocytes. The results recommend that antioxidants alpha-tocopherol (200 μM), sodium selenite (40 μM), melatonin (30 μM) and ascorbic acid (100 μM) during IVM reduced the oxidative stress by decreasing ROS levels in oocytes, thus improving embryo quantity and quality.
Collapse
Affiliation(s)
- S K Tripathi
- ICAR-National Institute of Animal Nutrition and Physiology, Adugodi, Bangalore, India
| | - S Nandi
- ICAR-National Institute of Animal Nutrition and Physiology, Adugodi, Bangalore, India.
| | - P S P Gupta
- ICAR-National Institute of Animal Nutrition and Physiology, Adugodi, Bangalore, India
| | - S Mondal
- ICAR-National Institute of Animal Nutrition and Physiology, Adugodi, Bangalore, India
| |
Collapse
|
7
|
Zucker I, Wang H, Mishra PK, Nandi S. Cardiac sympathetic afferent denervation reduces matrix metalloproteinase expression and improves cardiac remodeling in rats post myocardial infarction. Eur Heart J 2022. [DOI: 10.1093/eurheartj/ehac544.3008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
In a previous study from our laboratory, we demonstrated that chronic and selective cardiac sympathetic afferent (spinal) denervation at the time of myocardial infarction (MI) using epicardial application of resiniferatoxin (RTX), a neuronal toxin capable of inducing rapid degeneration of transient receptor potential vanilloid 1 (TRPV1)-expressing afferent neurons and fibers, markedly reduced the cardiac remodeling process 9–11 weeks post-MI in rats. This included reduced cardiac hypertrophy, fibrosis and apoptosis. Here, we further investigated the effect of epicardial application of RTX at the time of MI on cardiac extracellular matrix (ECM) and remodeling post-MI. Echocardiographic and morphologic data demonstrated that, compared to MI+vehicle, MI+RTX exhibited a significantly slower LV chamber dilation (6-week echocardiographic data: left ventricular end-diastolic diameter, 10.7±0.2 vs. 9.6±0.3 mm; left ventricular end-systolic diameter: 8.8±0.2 vs. 7.8±0.3 mm; MI+vehicle vs. MI+RTX, n=18, p<0.05; mean±SE). Scanning electron microscopy showed that RTX reduced collagen deposition in the peri-infarct area in post-MI rats. Western blot and zymography were used to further evaluate the effect of RTX application on matrix metalloproteinase (MMP) expression and activity, which is responsible for degrading ECM and contributing to cardiac dilation post MI. Our data suggest time-dependent increases in MMP expression in infarcted hearts post MI. RTX application largely prevented the increase in MMP9 but not MMP2, 4 weeks post-MI. RTX prevented both increased MMP2 and MMP9 activities in the peri-infarct myocardium at 8–10 weeks post-MI. We further investigated the effect of RTX application on MI-induced cardiac inflammation, which has been reported as an upstream mechanism triggering MMP activation post-MI. The data show that RTX largely abolished MI-induced plasma extravasation and reduced macrophage infiltration and cardiac cytokine content in the peri-infarct or remote myocardium of post-MI rats. These data suggest that cardiac sympathetic afferent denervation at the time of MI exerts a local anti-inflammatory effect and reduces ECM remodeling by preventing excessive MMP activation in post-MI rats.
Funding Acknowledgement
Type of funding sources: Public grant(s) – National budget only. Main funding source(s): National Institutes of Health Grant HL126796
Collapse
Affiliation(s)
- I Zucker
- University of Nebraska Medical Center , Omaha , United States of America
| | - H Wang
- University of Nebraska Medical Center , Omaha , United States of America
| | - P K Mishra
- University of Nebraska Medical Center , Omaha , United States of America
| | - S Nandi
- University of Nebraska Medical Center , Omaha , United States of America
| |
Collapse
|
8
|
Dey S, Nandi S, Gildenast H, Shahed H, Hakala V, Grzechnik A, Paulmann C, Tolkiehn M, Englert U, Roth G, Peters L. Phase transitions in flexible crystals of cocrystal solvate of caffeine. Acta Cryst Sect A 2022. [DOI: 10.1107/s2053273322092798] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/19/2023]
|
9
|
Gupta PSP, Kaushik K, Johnson P, Krishna K, Nandi S, Mondal S, Nikhil Kumar Tej J, Somoskoi B, Cseh S. Effect of different vitrification protocols on post thaw viability and gene expression of ovine preantral follicles. Theriogenology 2022; 178:1-7. [PMID: 34735977 DOI: 10.1016/j.theriogenology.2021.10.024] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Revised: 10/21/2021] [Accepted: 10/21/2021] [Indexed: 11/25/2022]
Abstract
The aim of the present study was to establish a vitrification protocol for ovine preantral follicles, which can retain viability after thawing and to evaluate the impact of different vitrification treatments on apoptosis and development-related gene expression. Preantral follicles were isolated from cortical slices of ovaries by the mechanical method of isolation. The isolated preantral follicles (200-300 μm) were randomly assigned into four groups. Group1 - Control Fresh preantral follicles (256 follicles); Group 2- Vitrification treatment A (259 follicles) (Vitrification solution 1 (VS1) - Fetal bovine serum (FBS)10%, Ethylene glycol (EG):1.8 M, Dimethyl sulfoxide (DMSO): 1.4 M, Sucrose-0.3 M for 4 min; VS2- FBS10%, EG:4.5 M, DMSO: 3.5 M, Sucrose:0.3 M for 45 s), Group 3 - Vitr. treatment B (235 follicles) (VS1-FBS 20%, EG:1.3 M, DMSO1.05 M for 15 min, VS2- FBS 20%, EG:2.7 M, DMSO:2.1 M for 5 min) and Group 4-Vitrification treatment C (248 follicles) (VS1-Glycerol(Gly):1.2 M for 3 min, VS2- Gly:1.2 M, EG:3.6 M for 3 min, VS3- Gly3M, EG: 4.5 M for 1 min). Preantral follicles were placed in corresponding vitrification treatments and later plunged immediately into liquid nitrogen (-196 °C). After a week, the follicles were thawed and analyzed for follicular viability by trypan blue dye exclusion method as well as for gene expression. The results showed that the low concentration of cryoprotectants (vitrification treatment B) negatively affected the viability of preantral follicles in comparison with control follicles. There was no significant difference in the viability rates among the Control (87%), Treatment A (79%) and Treatment C (75%). The percentage of viable preantral follicles (73%) derived from Treatment B was significantly decreased (P<0.05%) in comparison to that of control. The expression of apoptotic gene BAK was higher in the vitrification treatment B group. Expressions of the other apoptosis-related genes i.e. Bcl2L1, BAD, BAX, Caspase 3, and Annexin showed no significant difference among the groups. The expression pattern of development competence genes GDF-9 and BMP-15 were higher (P < 0.05) in vitrification treatment A and C, respectively. Expression of NOBOX gene was significantly increased in preantral follicles with Vitrification treatment B compared to the control group. We conclude that both the Vitrification treatment A and Treatment C were the efficient vitrification treatment methods for the vitrification of ovine preantral follicles.
Collapse
Affiliation(s)
- P S P Gupta
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India.
| | - Kalpana Kaushik
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - P Johnson
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - Kavya Krishna
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - S Nandi
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - S Mondal
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - J Nikhil Kumar Tej
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - B Somoskoi
- Dept. and Clinic of Obstetrics & Reproduction, University of Veterinary Science, Budapest, Hungary
| | - S Cseh
- Dept. and Clinic of Obstetrics & Reproduction, University of Veterinary Science, Budapest, Hungary
| |
Collapse
|
10
|
Kaushik K, Gupta P, Johnson P, Krishna K, Nandi S, Mondal S, Kumar Tej JN, Bence S, Cseh S. Effect of retinol in the vitrification medium on viability of vitrified ovine preantral follicles and expression of key developmental and apoptosis related genes. Cryo Letters 2022; 43:10-17. [PMID: 35315865] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
BACKGROUND Vitrification increases the production of reactive oxygen species (ROS) and the antioxidants in the vitrification solution may be beneficial by reducing excessive ROS production. OBJECTIVE To evaluate the effect of retinol supplementation in vitrification solution on viability, apoptosis and development-related gene expression in vitrified sheep preantral follicles. MATERIALS AND METHODS Preantral follicles were isolated and randomly assigned into one of five groups: Group1, control fresh preantral follicles; Group 2, vitrification treatment; Group 3, vitrification + 2 μM retinol; Group 4, vitrification + 5 μM retinol; Group 5, vitrification + 10 μM retinol. Preantral follicles were placed in vitrification solutions and then plunged into liquid nitrogen (-196°C). After a week, the follicles were thawed and analyzed for follicular viability by trypan blue exclusion method and for gene expression. RESULTS Vitrification with 5 μM retinol positively affected viability in comparison with vitrification without retinol (P < 0.05). There was no significant difference in viability among the Group 1, Group 2, Group 3 and Group 5. Expression of apoptotic genes BAX and Casp 3 were higher in the vitrified group, and vitrification with 5 μM retinol (Group 4) is comparable to the control fresh. Expressions of other apoptosis-related genes (i.e., BCL2L1, BAD and BAK) showed significant difference between the control fresh group and the vitrification group with 5 μM retinol. Expression of Annexin5 was also significantly different among various groups. The expression of development competence genes GDF-9 and BMP-15 were higher (P < 0.05) in the Group vitrified with 5 μM retinol. CONCLUSION The supplementation of 5 μM retinol in vitrification solution was beneficial for the vitrification of ovine preantral follicles.
Collapse
Affiliation(s)
- K Kaushik
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - Psp Gupta
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India.
| | - P Johnson
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - K Krishna
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - S Nandi
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - S Mondal
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - J N Kumar Tej
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - S Bence
- Department and Clinic of Obstetrics and Reproduction, University of Veterinary Science, Budapest, Hungary
| | - S Cseh
- Department and Clinic of Obstetrics and Reproduction, University of Veterinary Science, Budapest, Hungary
| |
Collapse
|
11
|
Gupta PSP, Kaushik K, Krishna K, Nikhil Kumar Tej J, Nandi S, Mondal S, Johnson P. Regulatory role of Wnt signal in the estradiol synthesis of different size categories of ovarian follicles in buffalo (Bubalus bubalis). Reprod Domest Anim 2021; 57:368-380. [PMID: 34967467 DOI: 10.1111/rda.14075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Revised: 12/16/2021] [Accepted: 12/27/2021] [Indexed: 11/27/2022]
Abstract
The aim of the present study was to understand the role of Wnt signal in ovarian estradiol synthesis in various size categories of ovarian follicles. A six- day cell culture system was adopted to test the effect of a Wnt inhibitor i.e. Inhibitor of Wnt response (IWR) on the ovarian granulosa cell estradiol synthesis and associated genes related to estradiol synthesis and Wnt signaling (CYP19A1, CCND2, WNT2, FZD6, DVL1, APC, AXIN2, CTNNB1) in buffalo. It was conducted with four groups: Group 1:control, Group 2: control + FSH, Group 3: IWR, Group 4:IWR + FSH. No significant effect of IWR was observed on the ovarian granulosa cell proliferation. No significant difference in the estradiol levels was found in the spent media harvested after six days of in vitro culture among different groups in small and large-sized ovarian follicles. However, the estradiol level varied significantly (P < 0.05) among different treatment groups in medium-sized follicles. The estradiol level was significantly lower (P < 0.05) in IWR group compared to the control group and was also significantly lower in IWR+FSH group compared to the FSH group. The Wnt inhibitor had significantly (P< 0.05) reduced the gene expression of CYP19A1 in large ovarian follicles. Varied effects of IWR-1 and FSH on the expression of other genes were observed. The results indicated that there is a positive role of Wnt signal in estradiol synthesis in buffalo but the positive role was more discernable in medium and large-sized follicles.
Collapse
Affiliation(s)
- P S P Gupta
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - Kalpana Kaushik
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - Kavya Krishna
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - J Nikhil Kumar Tej
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - S Nandi
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - S Mondal
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - P Johnson
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| |
Collapse
|
12
|
Nandi S, Kumar P, Amin SA, Jha T, Gayen S. First molecular modelling report on tri-substituted pyrazolines as phosphodiesterase 5 (PDE5) inhibitors through classical and machine learning based multi-QSAR analysis. SAR QSAR Environ Res 2021; 32:917-939. [PMID: 34727793 DOI: 10.1080/1062936x.2021.1989721] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2021] [Accepted: 10/03/2021] [Indexed: 06/13/2023]
Abstract
Phosphodiesterase 5 (PDE5) falls under a broad category of metallohydrolase enzymes responsible for the catalysis of the phosphodiesterase bond, and thus it can terminate the action of cyclic guanosine monophosphate (cGMP). Overexpression of this enzyme leads to development of a number of pathological conditions. Thus, targeting the enzyme to develop inhibitors could be useful for the treatment of erectile dysfunction as well as pulmonary hypertension. In the current study, several molecular modelling techniques were utilized including Bayesian classification, single tree and forest tree recursive partitioning, and genetic function approximation to identify crucial structural fingerprints important for optimization of tri-substituted pyrazoline derivatives as PDE5 inhibitors. Later, various machine learning models were also developed that could be utilized to predict and screen PDE5 inhibitors in the future.
Collapse
Affiliation(s)
- S Nandi
- Department of Pharmaceutical Sciences, Dr. Harisingh Gour University, Sagar, India
| | - P Kumar
- Department of Computer Science, Institute of Science, Banaras Hindu University, Varanasi, India
| | - S A Amin
- Natural Science Laboratory, Division of Medicinal and Pharmaceutical Chemistry, Department of Pharmaceutical Technology, Jadavpur University, Kolkata, India
| | - T Jha
- Natural Science Laboratory, Division of Medicinal and Pharmaceutical Chemistry, Department of Pharmaceutical Technology, Jadavpur University, Kolkata, India
| | - S Gayen
- Department of Pharmaceutical Sciences, Dr. Harisingh Gour University, Sagar, India
- Laboratory of Drug Design and Discovery, Department of Pharmaceutical Technology, Jadavpur University, Kolkata, India
| |
Collapse
|
13
|
Gupta P, Johnson P, Kaushik K, Krishna K, Nandi S, Mondal S, Nikhil Kumar Tej J, Somoskoi B, Cseh S. Effect of retinol as antioxidant on the post-thaw viability and the expression of apoptosis and developmental competence-related genes of vitrified preantral follicles in buffalo (Bubalus bubalis). Reprod Domest Anim 2021; 56:1446-1455. [PMID: 34449946 DOI: 10.1111/rda.14009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Accepted: 08/25/2021] [Indexed: 11/30/2022]
Abstract
The present study evaluated the effect of supplementation of retinol in the vitrification solution on the viability, apoptosis and development-related gene expression in vitrified buffalo preantral follicles. Preantral follicles isolated from cortical slices of ovaries were randomly assigned into three groups: Group1-Control fresh preantral follicles; Group 2-Vitrification treatment (Vitrification solution 1 (VS1) -TCM-199 + 25 mM HEPES + Foetal bovine serum (FBS) 10%, Ethylene glycol (EG): 10%, Dimethyl sulphoxide (DMSO): 10%, Sucrose-0.3 M for 4 min; VS2- TCM-199 + 25 mM HEPES + FBS10%, EG:25%, DMSO: 25%, Sucrose:0.3 M for 45 s); Group3-vitrification treatment +5 μM of Retinol. Preantral follicles were placed in corresponding vitrification medium and plunged into liquid nitrogen (-196°C). After a week, the follicles were thawed and analysed for follicular viability and gene expression. There was no significant difference in the viability rates among the Group 1(Fresh preantral follicles) (91.46 ± 2.39%), Group 2 (89.59 ± 2.46%) and Group 3 (87.19 ± 4.05%). There was a significantly (p < .05) higher mRNA expression of BCL2L1, GDF-9 and BMP-15 in the vitrification + retinol group compared with the control group. There was a significantly (p < .05) higher expression of Caspase-3 and Annexin-5 in the vitrification group and Vitrification + retinol group compared with control group of follicles. It is concluded that the supplementation of 5 μM of Retinol in Vitrification solution was an efficient vitrification procedure for the vitrification of buffalo preantral follicles.
Collapse
Affiliation(s)
- Psp Gupta
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - P Johnson
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - K Kaushik
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - K Krishna
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - S Nandi
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - S Mondal
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - J Nikhil Kumar Tej
- ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - B Somoskoi
- Department and Clinic of Obstetrics & Reproduction, University of Veterinary Medicine, Budapest, Hungary
| | - S Cseh
- Department and Clinic of Obstetrics & Reproduction, University of Veterinary Medicine, Budapest, Hungary
| |
Collapse
|
14
|
Karikalan M, Chander V, Mahajan S, Deol P, Agrawal RK, Nandi S, Rai SK, Mathur A, Pawde A, Singh KP, Sharma GK. Natural infection of Delta mutant of SARS-CoV-2 in Asiatic lions of India. Transbound Emerg Dis 2021; 69:3047-3055. [PMID: 34404118 PMCID: PMC8447162 DOI: 10.1111/tbed.14290] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2021] [Revised: 07/29/2021] [Accepted: 08/15/2021] [Indexed: 12/12/2022]
Abstract
The current pandemic caused by a novel coronavirus (SARS‐CoV‐2) has underlined the importance of emerging diseases of zoonotic importance. Along with human beings, several species of wild and pet animals have been demonstrated to be infected by SARS‐CoV‐2, both naturally and experimentally. In addition, with constant emergence of new variants, the species susceptibility might further change which warrants intensified screening efforts. India is a vast and second most populated country, with a habitat of a very diverse range of animal species. In this study we place on record of SARS‐CoV‐2 infections in three captive Asiatic lions. Detailed genomic characterization revealed involvement of Delta mutant (Pango lineage B.1.617.2) of SARS‐CoV‐2 at two different locations. Interestingly, no other feline species enclosed in the zoo/park were found infected. The epidemiological and molecular analysis will contribute to the understanding of the emerging mutants of SARS‐CoV‐2 in wild and domestic animals.
Collapse
Affiliation(s)
- M Karikalan
- CADRAD, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, Uttar Pradesh, India
| | - V Chander
- CADRAD, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, Uttar Pradesh, India
| | - S Mahajan
- CADRAD, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, Uttar Pradesh, India
| | - P Deol
- CADRAD, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, Uttar Pradesh, India
| | - R K Agrawal
- CADRAD, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, Uttar Pradesh, India
| | - S Nandi
- CADRAD, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, Uttar Pradesh, India
| | - S K Rai
- Lion Safari Park, Etawah, Uttar Pradesh, India
| | - A Mathur
- Nahargarh Biological Park, Jaipur, Rajasthan, India
| | - A Pawde
- CADRAD, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, Uttar Pradesh, India
| | - K P Singh
- CADRAD, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, Uttar Pradesh, India
| | - G K Sharma
- CADRAD, ICAR-Indian Veterinary Research Institute, Izatnagar, Bareilly, Uttar Pradesh, India
| |
Collapse
|
15
|
Sarkar R, Nandi S, Lo M, Gope A, Chawla-Sarkar M. Viperin, an IFN-Stimulated Protein, Delays Rotavirus Release by Inhibiting Non-Structural Protein 4 (NSP4)-Induced Intrinsic Apoptosis. Viruses 2021; 13:1324. [PMID: 34372530 PMCID: PMC8310278 DOI: 10.3390/v13071324] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Revised: 06/19/2021] [Accepted: 06/23/2021] [Indexed: 12/27/2022] Open
Abstract
Viral infections lead to expeditious activation of the host's innate immune responses, most importantly the interferon (IFN) response, which manifests a network of interferon-stimulated genes (ISGs) that constrain escalating virus replication by fashioning an ill-disposed environment. Interestingly, most viruses, including rotavirus, have evolved numerous strategies to evade or subvert host immune responses to establish successful infection. Several studies have documented the induction of ISGs during rotavirus infection. In this study, we evaluated the induction and antiviral potential of viperin, an ISG, during rotavirus infection. We observed that rotavirus infection, in a stain independent manner, resulted in progressive upregulation of viperin at increasing time points post-infection. Knockdown of viperin had no significant consequence on the production of total infectious virus particles. Interestingly, substantial escalation in progeny virus release was observed upon viperin knockdown, suggesting the antagonistic role of viperin in rotavirus release. Subsequent studies unveiled that RV-NSP4 triggered relocalization of viperin from the ER, the normal residence of viperin, to mitochondria during infection. Furthermore, mitochondrial translocation of NSP4 was found to be impeded by viperin, leading to abridged cytosolic release of Cyt c and subsequent inhibition of intrinsic apoptosis. Additionally, co-immunoprecipitation studies revealed that viperin associated with NSP4 through regions including both its radical SAM domain and its C-terminal domain. Collectively, the present study demonstrated the role of viperin in restricting rotavirus egress from infected host cells by modulating NSP4 mediated apoptosis, highlighting a novel mechanism behind viperin's antiviral action in addition to the intricacy of viperin-virus interaction.
Collapse
Affiliation(s)
| | | | | | | | - Mamta Chawla-Sarkar
- Division of Virology, National Institute of Cholera and Enteric Diseases, P-33, C.I.T. Road Scheme-XM, Beliaghata, Kolkata 700010, India; (R.S.); (S.N.); (M.L.); (A.G.)
| |
Collapse
|
16
|
Nikhil Kumar Tej J, Johnson P, Krishna K, Kaushik K, Gupta PSP, Nandi S, Mondal S. Copper and Selenium stimulates CYP19A1 expression in caprine ovarian granulosa cells: possible involvement of AKT and WNT signalling pathways. Mol Biol Rep 2021; 48:3515-3527. [PMID: 33881728 DOI: 10.1007/s11033-021-06346-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2020] [Accepted: 04/07/2021] [Indexed: 11/29/2022]
Abstract
The role of copper and selenium on activation of estradiol synthesis pathways viz. PKA/AKT/WNT is not clearly elucidated. On this background we attempt to elcuiated the role of copper and selenium on mRNA expression of genes associated with estradiol synthesis in caprine ovarian granulose cell models. Ovarian granulosa cells from medium (3-5 mm) sized follicles were aspirated and distributed separately to different groups. Group I: control, Group II: cupric chloride (Cu: 0.5 mM), Group III: sodium selenite (Se: 100 ng/ml), Group IV: Cu + Se. The cells (105/well) were cultured in 96 well plate in the base culture medium of MEMα comprising of nonessential amino acids (1.1 mM), FSH (10 ng/mL), transferrin (5 µg/mL), IGF-I (2 ng/mL), androstenedione (10-6 M), penicillin (100 IU/mL), streptomycin (0.1 mg/mL) and fungizone (0.625 µl/mL) and insulin (1 ng/mL). The cells were incubated in a carbondioxide incubator (38 °C, 5% CO2, 95% RH). The medium was changed on alternate days and cells were harvested on day 6. Day 6 media was used for estimation of estradiol. The RNA isolated form harvested cells was used for qPCR assay. There was no significant (p > 0.05) difference in estradiol concentration between groups. The mRNA expression of AKT1, CYP19A1, WNT2 & 4, FZD6 and APC2 were significantly (p < 0.05) higher in Cu and Cu + Se groups compared to control. Whereas, the mRNA transcript of DVL1 and CSNK1 was significantly (p < 0.05) higher in Cu + Se group compared to control. Incontrast, no significant difference in mRNA expression of PRKAR1A and CTNNB1 was noticed. Our study support a key role of copper and selenium in activation of AKT and WNT signalling pathway that further lead to increase in the mRNA expression of CYP19A1.
Collapse
Affiliation(s)
- J Nikhil Kumar Tej
- ICAR-National Dairy Research Institute (NDRI), Karnal, Haryana, 132001, India.
| | - P Johnson
- Animal Biotechnology Lab, ICAR-National Institute of Animal Nutrition and Physiology (NIANP), Bengaluru, Karnataka, India
| | - Kavya Krishna
- Animal Biotechnology Lab, ICAR-National Institute of Animal Nutrition and Physiology (NIANP), Bengaluru, Karnataka, India
| | - Kalpana Kaushik
- Animal Biotechnology Lab, ICAR-National Institute of Animal Nutrition and Physiology (NIANP), Bengaluru, Karnataka, India
| | - P S P Gupta
- Animal Biotechnology Lab, ICAR-National Institute of Animal Nutrition and Physiology (NIANP), Bengaluru, Karnataka, India
| | - S Nandi
- Animal Biotechnology Lab, ICAR-National Institute of Animal Nutrition and Physiology (NIANP), Bengaluru, Karnataka, India
| | - S Mondal
- Animal Biotechnology Lab, ICAR-National Institute of Animal Nutrition and Physiology (NIANP), Bengaluru, Karnataka, India
| |
Collapse
|
17
|
Holland D, Nandi S, Nicolas C, Bozek J, Patanen M, Powis I. An experimental and theoretical study of the valence shell photoelectron spectrum of oxalyl chloride. Chem Phys 2021. [DOI: 10.1016/j.chemphys.2020.111050] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
18
|
Nandi S, Nathan A, Potunuru U, Gopal J, Thangaraj P, Dixit M. Altered kinetics of circulating vascular progenitors in patients with cardio-pulmonary bypass associated vasoplegia. Atherosclerosis 2020. [DOI: 10.1016/j.atherosclerosis.2020.10.319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
|
19
|
Bhowmick R, Halder UC, Chattopadhyay S, Chanda S, Nandi S, Bagchi P, Nayak MK, Chakrabarti O, Kobayashi N, Chawla-Sarkar M. Withdrawal: Rotaviral enterotoxin nonstructural protein 4 targets mitochondria for activation of apoptosis during infection. J Biol Chem 2020; 295:13956. [DOI: 10.1074/jbc.w120.015901] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
|
20
|
Nandi S, Mukherjee G, Chen QB, Frauendorf S, Banik R, Bhattacharya S, Dar S, Bhattacharyya S, Bhattacharya C, Chatterjee S, Das S, Samanta S, Raut R, Ghugre SS, Rajbanshi S, Ali S, Pai H, Asgar MA, Das Gupta S, Chowdhury P, Goswami A. First Observation of Multiple Transverse Wobbling Bands of Different Kinds in ^{183}Au. Phys Rev Lett 2020; 125:132501. [PMID: 33034500 DOI: 10.1103/physrevlett.125.132501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2020] [Revised: 07/17/2020] [Accepted: 08/27/2020] [Indexed: 06/11/2023]
Abstract
We report the first observation of two wobbling bands in ^{183}Au, both of which were interpreted as the transverse wobbling (TW) band but with different behavior of their wobbling energies as a function of spin. It increases (decreases) with spin for the positive (negative) parity configuration. The crucial evidence for the wobbling nature of the bands, dominance of the E2 component in the ΔI=1 transitions between the partner bands, is provided by the simultaneous measurements of directional correlation from the oriented states ratio and the linear polarization of the γ rays. Particle rotor model calculations with triaxial deformation reproduce the experimental data well. A value of spin, I_{m}, has been determined for the observed TW bands below which the wobbling energy increases and above which it decreases with spin. The nucleus ^{183}Au is, so far, the only nucleus in which both the increasing and the decreasing parts are observed and thus gives the experimental evidence of the complete transverse wobbling phenomenon.
Collapse
Affiliation(s)
- S Nandi
- Variable Energy Cyclotron Centre, 1/AF, Bidhan Nagar, Kolkata 700064, India
- Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, India
| | - G Mukherjee
- Variable Energy Cyclotron Centre, 1/AF, Bidhan Nagar, Kolkata 700064, India
- Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, India
| | - Q B Chen
- Physik-Department, Technische Universität München, D-85747 Garching, Germany
| | - S Frauendorf
- Department of Physics, University of Notre Dame, Notre Dame, Indiana 46556, USA
| | - R Banik
- Variable Energy Cyclotron Centre, 1/AF, Bidhan Nagar, Kolkata 700064, India
- Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, India
| | - Soumik Bhattacharya
- Variable Energy Cyclotron Centre, 1/AF, Bidhan Nagar, Kolkata 700064, India
- Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, India
| | - Shabir Dar
- Variable Energy Cyclotron Centre, 1/AF, Bidhan Nagar, Kolkata 700064, India
- Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, India
| | - S Bhattacharyya
- Variable Energy Cyclotron Centre, 1/AF, Bidhan Nagar, Kolkata 700064, India
- Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, India
| | - C Bhattacharya
- Variable Energy Cyclotron Centre, 1/AF, Bidhan Nagar, Kolkata 700064, India
- Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, India
| | - S Chatterjee
- UGC-DAE CSR, Kolkata Centre, Kolkata 700098, India
| | - S Das
- UGC-DAE CSR, Kolkata Centre, Kolkata 700098, India
| | - S Samanta
- UGC-DAE CSR, Kolkata Centre, Kolkata 700098, India
| | - R Raut
- UGC-DAE CSR, Kolkata Centre, Kolkata 700098, India
| | - S S Ghugre
- UGC-DAE CSR, Kolkata Centre, Kolkata 700098, India
| | - S Rajbanshi
- Department of Physics, Presidency University, Kolkata 700043, India
| | - Sajad Ali
- Government General Degree College at Pedong, Kalimpong 734311, India
| | - H Pai
- Saha Institute of Nuclear Physics, Kolkata 700064, India
| | - Md A Asgar
- Department of Physics, Prabhat Kumar College, Contai 721404, India
| | - S Das Gupta
- Victoria Institution (College), Kolkata 700009, India
| | - P Chowdhury
- University of Massachusetts Lowell, Lowell, Massachusetts 01854, USA
| | - A Goswami
- Saha Institute of Nuclear Physics, Kolkata 700064, India
| |
Collapse
|
21
|
Dutta D, Chattopadhyay S, Bagchi P, Halder UC, Nandi S, Mukherjee A, Kobayashi N, Taniguchi K, Chawla-Sarkar M. Withdrawal: Active participation of cellular chaperone Hsp90 in regulating the function of rotavirus nonstructural protein 3 (NSP3). J Biol Chem 2020; 295:13696. [DOI: 10.1074/jbc.w120.015798] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
|
22
|
Nandi S, Plésiat E, Zhong S, Palacios A, Busto D, Isinger M, Neoričić L, Arnold CL, Squibb RJ, Feifel R, Decleva P, L’Huillier A, Martín F, Gisselbrecht M. Attosecond timing of electron emission from a molecular shape resonance. Sci Adv 2020; 6:eaba7762. [PMID: 32789174 PMCID: PMC7399650 DOI: 10.1126/sciadv.aba7762] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/04/2020] [Accepted: 06/17/2020] [Indexed: 06/11/2023]
Abstract
Shape resonances in physics and chemistry arise from the spatial confinement of a particle by a potential barrier. In molecular photoionization, these barriers prevent the electron from escaping instantaneously, so that nuclei may move and modify the potential, thereby affecting the ionization process. By using an attosecond two-color interferometric approach in combination with high spectral resolution, we have captured the changes induced by the nuclear motion on the centrifugal barrier that sustains the well-known shape resonance in valence-ionized N2. We show that despite the nuclear motion altering the bond length by only 2%, which leads to tiny changes in the potential barrier, the corresponding change in the ionization time can be as large as 200 attoseconds. This result poses limits to the concept of instantaneous electronic transitions in molecules, which is at the basis of the Franck-Condon principle of molecular spectroscopy.
Collapse
Affiliation(s)
- S. Nandi
- Department of Physics, Lund University, 22100 Lund, Sweden
- Université de Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, F-69622 Villeurbanne, France
| | - E. Plésiat
- Departamento de Química, Módulo 13, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - S. Zhong
- Department of Physics, Lund University, 22100 Lund, Sweden
| | - A. Palacios
- Departamento de Química, Módulo 13, Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Institute of Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - D. Busto
- Department of Physics, Lund University, 22100 Lund, Sweden
| | - M. Isinger
- Department of Physics, Lund University, 22100 Lund, Sweden
| | - L. Neoričić
- Department of Physics, Lund University, 22100 Lund, Sweden
| | - C. L. Arnold
- Department of Physics, Lund University, 22100 Lund, Sweden
| | - R. J. Squibb
- Department of Physics, University of Gothenburg, 41296 Göteborg, Sweden
| | - R. Feifel
- Department of Physics, University of Gothenburg, 41296 Göteborg, Sweden
| | - P. Decleva
- Dipartimento di Scienze Chimiche e Farmaceutiche, Universitá di Trieste and IOM-CNR, 34127 Trieste, Italy
| | - A. L’Huillier
- Department of Physics, Lund University, 22100 Lund, Sweden
| | - F. Martín
- Departamento de Química, Módulo 13, Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA-Nanociencia), Cantoblanco, 28049 Madrid, Spain
- Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Donostia International Physics Center (DIPC), Paseo Manuel de Lardizabal 4, 20018 Donostia-San Sebastián, Spain
| | | |
Collapse
|
23
|
Nandi S, Liang G, Sindhava V, Angireddy R, Basu A, Banerjee S, Hodawadekar S, Zhang Y, Avadhani NG, Sen R, Atchison ML. YY1 control of mitochondrial-related genes does not account for regulation of immunoglobulin class switch recombination in mice. Eur J Immunol 2020; 50:822-838. [PMID: 32092784 DOI: 10.1002/eji.201948385] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2019] [Revised: 12/30/2019] [Accepted: 02/18/2020] [Indexed: 12/18/2022]
Abstract
Immunoglobulin class switch recombination (CSR) occurs in activated B cells with increased mitochondrial mass and membrane potential. Transcription factor Yin Yang 1 (YY1) is critical for CSR and for formation of the DNA loops involved in this process. We therefore sought to determine if YY1 knockout impacts mitochondrial gene expression and mitochondrial function in murine splenic B cells, providing a potential mechanism for regulating CSR. We identified numerous genes in splenic B cells differentially regulated when cells are induced to undergo CSR. YY1 conditional knockout caused differential expression of 1129 genes, with 59 being mitochondrial-related genes. ChIP-seq analyses showed YY1 was directly bound to nearly half of these mitochondrial-related genes. Surprisingly, at the time when YY1 knockout dramatically reduces DNA loop formation and CSR, mitochondrial mass and membrane potential were not significantly impacted, nor was there a significant change in mitochondrial oxygen consumption, extracellular acidification rate, or mitochondrial complex I or IV activities. Our results indicate that YY1 regulates numerous mitochondrial-related genes in splenic B cells, but this does not account for the impact of YY1 on CSR or long-distance DNA loop formation.
Collapse
Affiliation(s)
- Satabdi Nandi
- School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA
| | - Guanxiang Liang
- School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA
| | - Vishal Sindhava
- School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA
| | - Rajesh Angireddy
- School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA
| | - Arindam Basu
- School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA
| | - Sarmistha Banerjee
- School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA
| | - Suchita Hodawadekar
- School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA
| | - Yue Zhang
- School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA
| | - Narayan G Avadhani
- School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA
| | - Ranjan Sen
- Laboratory of Molecular Biology and Immunology, National Institute on Aging, Baltimore, MD, USA
| | - Michael L Atchison
- School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA
| |
Collapse
|
24
|
Banik R, Bhattacharyya S, Biswas S, Bhattacharya S, Mukherjee G, Rajbanshi S, Dar S, Nandi S, Ali R, Chatterjee S, Das S, Das Gupta S, Ghugre SS, Goswami A, Mondal D, Mukhopadhyay S, Pai H, Pal S, Pandit D, Raut R, Ray P, Samanta S. Exploring the structure of Xe isotopes in A ~ 130 region: Single particle and collective excitations. EPJ Web Conf 2020. [DOI: 10.1051/epjconf/202023204001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
High and medium spin structures of 130,131Xe have been studied using α-induced fusion-evaporation reaction and the Indian National Gamma Array (INGA) coupled with a digital data acquisition system. Various new band structures and near yrast levels of 131Xe have been established. The multipolarities of the observed transitions have been assigned on the basis of the DCO ratios and the polarization asymmetry measurements. Band structures based on 1-quasi-particle (qp), 3-qp configurations have been observed. A new Magnetic Rotational (MR) band based on 5-qp configuration has also been established in 131Xe. The MR band has been interpreted in terms of shears mechanism with principal axis cranking (SPAC) calculations. Shell Model calculations are carried out to describe the non yrast states of 131Xe above the 11/2− isomer. New excited states have also been identified in 130Xe, produced in the same reaction.
Collapse
|
25
|
Mandal K, Pogoda K, Nandi S, Mathieu S, Kasri A, Klein E, Radvanyi F, Goud B, Janmey PA, Manneville JB. Role of a Kinesin Motor in Cancer Cell Mechanics. Nano Lett 2019; 19:7691-7702. [PMID: 31565944 PMCID: PMC7737127 DOI: 10.1021/acs.nanolett.9b02592] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Molecular motors play important roles in force generation, migration, and intracellular trafficking. Changes in specific motor activities are altered in numerous diseases. KIF20A, a motor protein of the kinesin-6 family, is overexpressed in bladder cancer, and KIF20A levels correlate negatively with clinical outcomes. We report here a new role for the KIF20A kinesin motor protein in intracellular mechanics. Using optical tweezers to probe intracellular mechanics and surface AFM to probe cortical mechanics, we first confirm that bladder urothelial cells soften with an increasing cancer grade. We then show that inhibiting KIF20A makes the intracellular environment softer for both high- and low-grade bladder cancer cells. Upon inhibition of KIF20A, cortical stiffness also decreases in lower grade cells, while it surprisingly increases in higher grade malignant cells. Changes in cortical stiffness correlate with the interaction of KIF20A with myosin IIA. Moreover, KIF20A inhibition negatively regulates bladder cancer cell motility irrespective of the underlying substrate stiffness. Our results reveal a central role for a microtubule motor in cell mechanics and migration in the context of bladder cancer.
Collapse
Affiliation(s)
- Kalpana Mandal
- Institute for Medicine and Engineering , University of Pennsylvania , Philadelphia , Pennsylvania 19104 , United States
| | - Katarzyna Pogoda
- Institute for Medicine and Engineering , University of Pennsylvania , Philadelphia , Pennsylvania 19104 , United States
- Institute of Nuclear Physics , Polish Academy of Sciences , PL-31342 Krakow 31-342 , Poland
| | - Satabdi Nandi
- School of Veterinary Medicine , University of Pennsylvania , Philadelphia , Pennsylvania 19104 , United States
- Laboratory of Molecular Biology and Immunology , National Institute on Aging , Baltimore , Maryland 21224 , United States
| | - Samuel Mathieu
- Institut Curie, PSL Research University, CNRS, UMR 144 , 26 rue d'Ulm , Paris Cedex 05 75248 , France
| | - Amal Kasri
- Institut Curie, PSL Research University, CNRS, UMR 144 , 26 rue d'Ulm , Paris Cedex 05 75248 , France
- ICM Brain and Spine Institute , Pitié Salpêtrière Hospital , 47-83 Boulevard de l'Hôpital , Paris 75013 , France
| | - Eric Klein
- Department of Biology , Rutgers University-Camden Waterfront Tech Center , Camden , New Jersey 08103 , United States
| | - François Radvanyi
- Institut Curie, PSL Research University, CNRS, UMR 144 , 26 rue d'Ulm , Paris Cedex 05 75248 , France
| | - Bruno Goud
- Institut Curie, PSL Research University, CNRS, UMR 144 , 26 rue d'Ulm , Paris Cedex 05 75248 , France
| | - Paul A Janmey
- Institute for Medicine and Engineering , University of Pennsylvania , Philadelphia , Pennsylvania 19104 , United States
- Departments of Physiology and Physics & Astronomy , University of Pennsylvania , Philadelphia , Pennsylvania 19104 , United States
| | - Jean-Baptiste Manneville
- Institut Curie, PSL Research University, CNRS, UMR 144 , 26 rue d'Ulm , Paris Cedex 05 75248 , France
| |
Collapse
|
26
|
Saikia J, Malik P, Madan K, Jain D, Bharati S, Gowda M, Nandi S, Deo S, Kumar S. EP1.17-13 Operated Stages I-IIIB NSCLC Among Young Indian Cohorts - Clinical Profile and Outcomes. J Thorac Oncol 2019. [DOI: 10.1016/j.jtho.2019.08.2423] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
27
|
Saxena M, Nandi S, Saxena AK. QSAR and molecular docking studies of lethal factor protease inhibitors against Bacillus anthracis. SAR QSAR Environ Res 2019; 30:715-731. [PMID: 31556709 DOI: 10.1080/1062936x.2019.1658219] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2019] [Accepted: 08/18/2019] [Indexed: 06/10/2023]
Abstract
Bacillus anthracis is considered as a biological warfare agent because it is the causative agent of the serious infectious anthrax disease. Delay in treatment leads to lethal factor-mediated toxaemia which is very critical due to lack of therapeutic options. Consequently, attempts have been made to discover potent lethal factor (LF) protease inhibitors such as small-molecule synthetic 2-thio-1,3-thiazolidine-4-one (rhodanine) compounds. But computed descriptor-based quantitative structure-activity relationship (QSAR) and drug design studies on such aspect are poorly represented. Therefore, an attempt was made for developing QSAR models using structural descriptors for 1,3-thiazolidine-4-one compounds. The models were developed on a series of 49 LF protease inhibitors using the combination of constitutional, functional group, atom-centred fragment and molecular property descriptors. The best QSAR model included four variables, namely, C-040, nR05, GVWAI-80 and ALOGP that correlated well with the anti-LF protease activity with a good correlation coefficient (r = 0.870) of good statistical significance (F4, 29 = 14.09 (α = 0.001) F4, 29 = 6.19). This model was also validated and explained 58.1% of variances of the Bacillus anthracis inhibitory activities of the studied compounds with r2pred = 0.710 which denotes external predictability. Finally, molecular docking was carried out to predict the mode of binding of some highly active congeneric compounds. It was shown that VAL 1403 is an important residue for phenyl ring. TYR 1456 and HIS 1418 are responsible for interaction with the rhodanine nucleus. Therefore, these residues are considered responsible for the inhibition of LF protease anthrax and can predict significant dimension of essential structural features of these inhibitors to evaluate, screen and help priorities of the synthesis of the candidates against anthrax bioterrorism.
Collapse
Affiliation(s)
- M Saxena
- Department of Chemistry, Amity University , Lucknow , India
| | - S Nandi
- Department of Pharmaceutical Chemistry, Global Institute of Pharmaceutical Education and Research, Affiliated to Uttarakhand Technical University , Kashipur , India
| | - A K Saxena
- Division of Medicinal and Process Chemistry, CSIR-Central Drug Research Institute , Lucknow , India
| |
Collapse
|
28
|
|
29
|
Gupta PSP, Nikhil Kumar Tej J, Johnson P, Nandi S, Mondal S, Kaushik K, Krishna K. Efficiency of different synchronization protocols on oestrous response and rhythmic changes in 17β-oestradiol and progesterone hormone concentration in Salem Black goats. BIOL RHYTHM RES 2019. [DOI: 10.1080/09291016.2019.1579885] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- P. S. P Gupta
- Animal Physiology Division, ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - J. Nikhil Kumar Tej
- Animal Physiology Division, ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - P. Johnson
- Animal Physiology Division, ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - S. Nandi
- Animal Physiology Division, ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - S. Mondal
- Animal Physiology Division, ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - Kalpana Kaushik
- Animal Physiology Division, ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| | - Kavya Krishna
- Animal Physiology Division, ICAR-National Institute of Animal Nutrition and Physiology, Bengaluru, India
| |
Collapse
|
30
|
Kondev F, Hartley D, Orford R, Clark J, Savard G, Auranen K, Ayangeakaa A, Bottoni S, Carpenter M, Copp P, Hicks K, Hoffman C, Janssens R, Kay B, Lauritsen T, Li T, Marley S, Morgan G, Mukherjee G, Nandi S, Reviol W, Sethi J, Seweryniak D, Stolze S, Wu J, Yadav R, Zhu S. Masses and Beta-decay Studies of Neutron-rich Nuclei using the X-array and Gammasphere. EPJ Web Conf 2019. [DOI: 10.1051/epjconf/201922301028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Properties of neutron-rich nuclei in the A˜160 region are important for achieving a better understanding of the nuclear structure in this region where little is known owing to diffculties in the production of these nuclei at the present nuclear physics facilities. These properties are essential ingredients in the interpretation of the rareearth peak at A˜160 in the r process abundance distribution, since theoretical models are sensitive to nuclear structure input. Predicated on these ideas, we have initiated a new experimental program at Argonne National Laboratory. During the first experiment, beams from the Californium Rare Isotope Breeder Upgrade radioactive beam facility were used in conjunction with the SATURN decay station and the X-array. We focused initially on several odd-odd nuclei, where β decays of both the ground state and an excited isomer were investigated. Because of the spin difference, a variety of structures in the daughter nuclei were selectively populated and characterized based on their decay properties. Mass measurements using the Canadian Penning Trap aimed at establishing the excitation energy of the β-decaying isomers were also carried out. Evidence was found for a change in the single-particle structure, which in turn results in the formation of a sizable N=98 sub-shell gap at large deformation. Results from the first experimental campaign using the newly-commissioned β-decay station at Gammasphere are also presented.
Collapse
|
31
|
Holzmeier F, Wolf TJA, Gienger C, Wagner I, Bozek J, Nandi S, Nicolas C, Fischer I, Gühr M, Fink RF. Normal and resonant Auger spectroscopy of isocyanic acid, HNCO. J Chem Phys 2018; 149:034308. [DOI: 10.1063/1.5030621] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- F. Holzmeier
- Institut des Sciences Moléculaire d’Orsay (CNRS), Université Paris-Sud, Université Paris-Saclay, 91405 Orsay, France
- Synchrotron SOLEIL, 91192 Gif-sur-Yvette, France
| | - T. J. A. Wolf
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - C. Gienger
- Institut für Physikalische und Theoretische Chemie, Universität Tübingen, 72076 Tübingen, Germany
| | - I. Wagner
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, 97074 Würzburg, Germany
| | - J. Bozek
- Synchrotron SOLEIL, 91192 Gif-sur-Yvette, France
| | - S. Nandi
- Department of Physics, Lund University, 221 00 Lund, Sweden
| | - C. Nicolas
- Synchrotron SOLEIL, 91192 Gif-sur-Yvette, France
| | - I. Fischer
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, 97074 Würzburg, Germany
| | - M. Gühr
- Institut für Physik und Astronomie Universität Potsdam, 14476 Potsdam, Germany
| | - R. F. Fink
- Institut für Physikalische und Theoretische Chemie, Universität Tübingen, 72076 Tübingen, Germany
| |
Collapse
|
32
|
Nandi S, Tripathi SK, Gupta PSP, Mondal S. Nutritional and metabolic stressors on ovine oocyte development and granulosa cell functions in vitro. Cell Stress Chaperones 2018; 23:357-371. [PMID: 28986745 PMCID: PMC5904079 DOI: 10.1007/s12192-017-0846-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2017] [Revised: 08/21/2017] [Accepted: 09/24/2017] [Indexed: 12/24/2022] Open
Abstract
The present study was undertaken to study the effect of ammonia, urea, non-esterified fatty acid (NEFA), and β-hydroxybutyric acid (β-OHB) on oocyte development and granulosa cell (GC) growth parameter of ovine (Ovis aries). Ovine oocytes were matured in vitro in the presence of different concentration of ammonia, urea, NEFA, and β-OHB for 24 h, in vitro inseminated and evaluated for cleavage and blastocyst yield. Same concentrations of ammonia, urea, NEFA, and β-OHB were examined on growth parameters and hormone secretion activity of granulosa cells in vitro. Real-time reverse transcription polymerase chain reaction was used to evaluate the expression of steroidogenic genes (steroidogenic cytochrome P-450 (CYP11A1, CYP19A1)), cell proliferation-related genes (GDF9, FSHr), and apoptosis-related genes (BCL-2 and BAX). The maturation, cleavage, and blastocyst production rates were significantly lowered in media containing either 200 μM ammonia or 5 mM urea or high combo NEFA or 1 μM β-OHB. Exposure of granulosa cell to 400 μM ammonia or 1 μM β-OHB or very high combo or 6 mM urea significantly decreased all the parameters examined compared to lower levels of all nutritional and metabolic stressors. Elevated concentration of metabolic stressors induced GC apoptosis through the BAX/BCL-2 pathway and reduced the steroidogenic gene messenger RNA (mRNA) expression and cell proliferation gene mRNA expression. These results suggested that the decreased function of GCs may cause ovarian dysfunction and offered an improved understanding of the molecular mechanism responsible for the low fertility in metabolic stressed condition.
Collapse
Affiliation(s)
- S Nandi
- ICAR - National Institute of Animal Nutrition and Physiology, Bangalore, 560030, India.
| | - S K Tripathi
- ICAR - National Institute of Animal Nutrition and Physiology, Bangalore, 560030, India
| | - P S P Gupta
- ICAR - National Institute of Animal Nutrition and Physiology, Bangalore, 560030, India
| | - S Mondal
- ICAR - National Institute of Animal Nutrition and Physiology, Bangalore, 560030, India
| |
Collapse
|
33
|
Mor A, Mondal S, Reddy IJ, Nandi S, Gupta P. Molecular cloning and expression of FGF2 gene in pre-implantation developmental stages of in vitro-produced sheep embryos. Reprod Domest Anim 2018; 53:895-903. [PMID: 29638025 DOI: 10.1111/rda.13182] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2017] [Accepted: 01/24/2018] [Indexed: 01/19/2023]
Abstract
Early embryonic mortality is one of the main sources of reproductive loss in domestic ruminants including sheep. Fibroblast growth factor-2 (FGF-2) is a member of FGFs family that mediates trophoblast activities and regulates embryonic development in various species. In this study, we have cloned, characterized sheep FGF2 cDNA (KU316368) and studied the expression in sheep embryos. Ovaries of non-pregnant sheep were collected from local abattoir and matured in culture medium at 38.5ºC, 5% CO2 , 95% humidity for 22-24 hr. The matured oocytes were inseminated with capacitated spermatozoa in Brackett and Oliphant medium and resulted embryos were cultured in CO2 incubator for 6-7 days to complete the developmental stages from two cells to blastocyst stage. Total RNA was extracted from immature oocytes (n = 100), mature oocytes (n = 100) and different stages of embryos such as 2 cell (n = 50), 4 cell (n = 25), 8 cell (n = 12), 16 cell (n = 6), morula (n = 5) and blastocyst (n = 3). The total RNA isolated from the oocytes and embryos was reverse transcribed and subjected to real-time polymerase chain reaction using sequence-specific primers and SYBR green as the DNA dye. On sequence analysis, the nucleotide sequence of sheep FGF2 exhibited highest sequence similarity with cattle (100%) and least with rat and mouse (69.2%). At the deduced amino acid level, a highest degree of similarity was noticed with cattle, buffalo, goat, pig, camel and horse (100%) and lowest degree of identity with rat, human and mouse (98.2%). The FGF2 mRNA expression was higher in immature and mature oocytes and gradually decreases from 2-cell stage of embryo to the blastocyst stage. More over a significant differences in FGF2 mRNA expression (p < .05) were observed between immature oocytes and all pre-implantation stages of embryo. It can be concluded that FGF-2 plays a significant role in pre-implantation and early development of embryos in sheep.
Collapse
Affiliation(s)
- A Mor
- ICAR-National Institute of Animal Nutrition and Physiology, Bangalore, India.,Department of Biotechnology, Jain University, Bangalore, India
| | - S Mondal
- ICAR-National Institute of Animal Nutrition and Physiology, Bangalore, India
| | - I J Reddy
- ICAR-National Institute of Animal Nutrition and Physiology, Bangalore, India
| | - S Nandi
- ICAR-National Institute of Animal Nutrition and Physiology, Bangalore, India
| | - Psp Gupta
- ICAR-National Institute of Animal Nutrition and Physiology, Bangalore, India
| |
Collapse
|
34
|
Nandi S, Ahmed S, Saxena AK. Combinatorial design and virtual screening of potent anti-tubercular fluoroquinolone and isothiazoloquinolone compounds utilizing QSAR and pharmacophore modelling. SAR QSAR Environ Res 2018; 29:151-170. [PMID: 29347843 DOI: 10.1080/1062936x.2017.1419375] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2017] [Accepted: 12/16/2017] [Indexed: 05/19/2023]
Abstract
The virulence of tuberculosis infections resistant to conventional combination drug regimens cries for the design of potent fluoroquinolone compounds to be used as second line antimycobacterial chemotherapeutics. One of the most effective in silico methods is combinatorial design and high throughput screening by a ligand-based pharmacophore prior to experiment. The combinatorial design of a series of 3850 fluoroquinolone and isothiazoloquinolone compounds was then screened virtually by applying a topological descriptor based quantitative structure activity relationship (QSAR) for predicting highly active congeneric quinolone leads against Mycobacterium fortuitum and Mycobacterium smegmatis. The predicted highly active congeneric hits were then subjected to a comparative study between existing lead sparfloxacin with fluoroquinolone FQ hits as well as ACH-702 with predicted active isothiazoloquinolones, utilizing pharmacophore modelling to focus on the mechanism of drug binding against mycobacterial DNA gyrase. Finally, 68 compounds including 34 FQ and 34 isothiazoloquinolones were screened through high throughput screening comprising QSAR, the Lipinski rule of five and ligand-based pharmacophore modelling.
Collapse
Affiliation(s)
- S Nandi
- a Division of Pharmaceutical Chemistry , Global Institute of Pharmaceutical Education and Research, Affiliated to Uttarakhand Technical University , Kashipur , India
| | - S Ahmed
- a Division of Pharmaceutical Chemistry , Global Institute of Pharmaceutical Education and Research, Affiliated to Uttarakhand Technical University , Kashipur , India
| | - A K Saxena
- b Division of Medicinal and Process Chemistry , CSIR-Central Drug Research Institute , Lucknow , India
| |
Collapse
|
35
|
Jana Y, Nandi S, Gupta H. Lattice dynamics and force constant calculation for the Raman and infra-red wave numbers of cubic bismuth-based pyrochlore compounds. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2017.10.067] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
36
|
Isinger M, Squibb RJ, Busto D, Zhong S, Harth A, Kroon D, Nandi S, Arnold CL, Miranda M, Dahlström JM, Lindroth E, Feifel R, Gisselbrecht M, L’Huillier A. Photoionization in the time and frequency domain. Science 2017; 358:893-896. [DOI: 10.1126/science.aao7043] [Citation(s) in RCA: 141] [Impact Index Per Article: 20.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2017] [Accepted: 10/19/2017] [Indexed: 11/02/2022]
Abstract
Ultrafast processes in matter, such as the electron emission after light absorption, can now be studied using ultrashort light pulses of attosecond duration (10−18 seconds) in the extreme ultraviolet spectral range. The lack of spectral resolution due to the use of short light pulses has raised issues in the interpretation of the experimental results and the comparison with theoretical calculations. We determine photoionization time delays in neon atoms over a 40–electron volt energy range with an interferometric technique combining high temporal and spectral resolution. We spectrally disentangle direct ionization from ionization with shake-up, in which a second electron is left in an excited state, and obtain excellent agreement with theoretical calculations, thereby solving a puzzle raised by 7-year-old measurements.
Collapse
Affiliation(s)
- M. Isinger
- Department of Physics, Lund University, P.O. Box 118, SE-22 100 Lund, Sweden
| | - R. J. Squibb
- Department of Physics, University of Gothenburg, Origovägen 6B, SE-41 296 Göteborg, Sweden
| | - D. Busto
- Department of Physics, Lund University, P.O. Box 118, SE-22 100 Lund, Sweden
| | - S. Zhong
- Department of Physics, Lund University, P.O. Box 118, SE-22 100 Lund, Sweden
| | - A. Harth
- Department of Physics, Lund University, P.O. Box 118, SE-22 100 Lund, Sweden
| | - D. Kroon
- Department of Physics, Lund University, P.O. Box 118, SE-22 100 Lund, Sweden
| | - S. Nandi
- Department of Physics, Lund University, P.O. Box 118, SE-22 100 Lund, Sweden
| | - C. L. Arnold
- Department of Physics, Lund University, P.O. Box 118, SE-22 100 Lund, Sweden
| | - M. Miranda
- Department of Physics, Lund University, P.O. Box 118, SE-22 100 Lund, Sweden
| | - J. M. Dahlström
- Department of Physics, Lund University, P.O. Box 118, SE-22 100 Lund, Sweden
- Department of Physics, Stockholm University, SE-106 91 Stockholm, Sweden
| | - E. Lindroth
- Department of Physics, Stockholm University, SE-106 91 Stockholm, Sweden
| | - R. Feifel
- Department of Physics, University of Gothenburg, Origovägen 6B, SE-41 296 Göteborg, Sweden
| | - M. Gisselbrecht
- Department of Physics, Lund University, P.O. Box 118, SE-22 100 Lund, Sweden
| | - A. L’Huillier
- Department of Physics, Lund University, P.O. Box 118, SE-22 100 Lund, Sweden
| |
Collapse
|
37
|
Syrett CM, Sindhava V, Hodawadekar S, Myles A, Liang G, Zhang Y, Nandi S, Cancro M, Atchison M, Anguera MC. Loss of Xist RNA from the inactive X during B cell development is restored in a dynamic YY1-dependent two-step process in activated B cells. PLoS Genet 2017; 13:e1007050. [PMID: 28991910 PMCID: PMC5648283 DOI: 10.1371/journal.pgen.1007050] [Citation(s) in RCA: 60] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2017] [Revised: 10/19/2017] [Accepted: 09/28/2017] [Indexed: 12/05/2022] Open
Abstract
X-chromosome inactivation (XCI) in female lymphocytes is uniquely regulated, as the inactive X (Xi) chromosome lacks localized Xist RNA and heterochromatin modifications. Epigenetic profiling reveals that Xist RNA is lost from the Xi at the pro-B cell stage and that additional heterochromatic modifications are gradually lost during B cell development. Activation of mature B cells restores Xist RNA and heterochromatin to the Xi in a dynamic two-step process that differs in timing and pattern, depending on the method of B cell stimulation. Finally, we find that DNA binding domain of YY1 is necessary for XCI in activated B cells, as ex-vivo YY1 deletion results in loss of Xi heterochromatin marks and up-regulation of X-linked genes. Ectopic expression of the YY1 zinc finger domain is sufficient to restore Xist RNA localization during B cell activation. Together, our results indicate that Xist RNA localization is critical for maintaining XCI in female lymphocytes, and that chromatin changes on the Xi during B cell development and the dynamic nature of YY1-dependent XCI maintenance in mature B cells predisposes X-linked immunity genes to reactivation. Females are predisposed to develop various autoimmune disorders, and the genetic basis for this susceptibility is the X-chromosome. X-linked genes are dosage compensated between sexes by X-chromosome Inactivation (XCI) during embryogenesis and maintained into adulthood. Here we show that the chromatin of the inactive X loses epigenetic modifications during B cell lineage development. We found that female mature B cells, which are the pathogenic cells in autoimmunity, have a dynamic two-step mechanism of maintaining XCI during stimulation. The transcription factor YY1, which regulates DNA looping during V(D)J recombination in B cells, is necessary for relocalizing Xist RNA back to the inactive X in activated B cells. YY1 deletion ex vivo in mature B cells impairs heterochromatin mark enrichment on the inactive X, and results in increased X-linked gene expression. We demonstrate that the DNA binding domain of YY1 is sufficient for localizing Xist RNA to the inactive X during B cell stimulation. Our study indicates that Xist RNA localization is critical for maintaining XCI in female lymphocytes. We propose that chromatin changes on the Xi during B cell development and the dynamic nature of YY1-dependent XCI maintenance in mature B cells predisposes X-linked immunity genes to reactivation.
Collapse
Affiliation(s)
- Camille M. Syrett
- Department of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia PA, United States of America
| | - Vishal Sindhava
- Department of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia PA, United States of America
- Department of Pathology, School of Medicine, University of Pennsylvania, Philadelphia, PA, United States of America
| | - Suchita Hodawadekar
- Department of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia PA, United States of America
| | - Arpita Myles
- Department of Pathology, School of Medicine, University of Pennsylvania, Philadelphia, PA, United States of America
| | - Guanxiang Liang
- Department of Pathology, School of Medicine, University of Pennsylvania, Philadelphia, PA, United States of America
| | - Yue Zhang
- Department of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia PA, United States of America
| | - Satabdi Nandi
- Department of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia PA, United States of America
| | - Michael Cancro
- Department of Pathology, School of Medicine, University of Pennsylvania, Philadelphia, PA, United States of America
| | - Michael Atchison
- Department of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia PA, United States of America
| | - Montserrat C. Anguera
- Department of Biomedical Sciences, School of Veterinary Medicine, University of Pennsylvania, Philadelphia PA, United States of America
- * E-mail:
| |
Collapse
|
38
|
Banerjee T, Das A, Ghosh E, Saha M, Dasgupta S, Chowdhury D, Ojha S, Nandi S, Haldar A, Datta A, Purakayastha S. Clinical profile and outcome of optic neuritis in the City of Kolkata, India. J Neurol Sci 2017. [DOI: 10.1016/j.jns.2017.08.687] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
39
|
Nandi S, Ukil B, Lyndem LM. Acute and sub-acute toxicological evaluation of the alcoholic leaf and root extracts of Clerodendrum infortunatum L. Nat Prod Res 2017; 32:2062-2066. [DOI: 10.1080/14786419.2017.1360879] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- S. Nandi
- Parasitology Research Laboratory, Department of Zoology, Visva Bharati, Santiniketan, India
| | - B. Ukil
- Parasitology Research Laboratory, Department of Zoology, Visva Bharati, Santiniketan, India
| | - L. M. Lyndem
- Parasitology Research Laboratory, Department of Zoology, Visva Bharati, Santiniketan, India
| |
Collapse
|
40
|
Gaykwad C, Garkhal J, Chethan GE, Nandi S, De UK. Amelioration of oxidative stress using N-acetylcysteine in canine parvoviral enteritis. J Vet Pharmacol Ther 2017; 41:68-75. [PMID: 28703421 PMCID: PMC7166929 DOI: 10.1111/jvp.12434] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2016] [Accepted: 06/02/2017] [Indexed: 12/18/2022]
Abstract
Previously, antioxidants have not been evaluated for treatment of parvoviral diarrhea in dogs. In this study, antioxidant potential of N‐acetylcysteine (NAC) in dogs infected with canine parvovirus with a nonblinded randomized clinical trial has been carried out. A total 18 parvo‐infected dogs were randomly divided into two groups: nine parvo‐infected dogs were treated with supportive treatment and nine parvo‐infected dogs were treated with NAC along with supportive treatment. Simultaneously, nine healthy dogs were kept as healthy control. In parvo‐infected dogs, marked hemoconcentration, leucopenia, neutropenia and oxidative stress were noticed compared to healthy dogs. The NAC treatment progressively improved the leukocyte, neutrophil, monocyte, and eosinophil counts over the time in parvovirus‐infected dogs compared to dogs that received only supportive treatment. In addition, NAC treatment significantly improved glutathione S‐transferase (GST) activity and decreased nitrite plus nitrate (NOx) and malondialdehyde (MDA) concentrations on day 3 and 5 compared to supportive treatment in parvo‐infected dogs. However, supportive treatment alone failed to ameliorate oxidative stress in the infected dogs till day 5. The results of this study suggest that NAC represents a potential additional treatment option that could be considered to improve the health condition and minimize the duration of hospitalization in case of canine parvoviral diarrhea.
Collapse
Affiliation(s)
- C Gaykwad
- Division of Medicine, Indian Veterinary Research Institute (IVRI), Izatnagar, Uttar Pradesh, India
| | - J Garkhal
- Division of Medicine, Indian Veterinary Research Institute (IVRI), Izatnagar, Uttar Pradesh, India
| | - G E Chethan
- Division of Medicine, Indian Veterinary Research Institute (IVRI), Izatnagar, Uttar Pradesh, India
| | - S Nandi
- CADRAD, Indian Veterinary Research Institute, Izatnagar, Uttar Pradesh, India
| | - U K De
- Division of Medicine, Indian Veterinary Research Institute (IVRI), Izatnagar, Uttar Pradesh, India
| |
Collapse
|
41
|
Srivastava SK, Shinde S, Singh SK, Mehrotra S, Verma MR, Singh AK, Nandi S, Srivastava N, Singh SK, Goswami TK, Bhure SK, Kumar H, Ghosh SK. Antisperm antibodies in repeat-breeding cows: Frequency, detection and validation of threshold levels employing sperm immobilization, sperm agglutination and immunoperoxidase assay. Reprod Domest Anim 2017; 52:195-202. [DOI: 10.1111/rda.12877] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2016] [Accepted: 09/24/2016] [Indexed: 11/30/2022]
Affiliation(s)
- SK Srivastava
- Division of Animal Reproduction; ICAR-Indian Veterinary Research Institute; Izatnagar India
| | - S Shinde
- Division of Animal Reproduction; ICAR-Indian Veterinary Research Institute; Izatnagar India
| | - SK Singh
- Division of Animal Reproduction; ICAR-Indian Veterinary Research Institute; Izatnagar India
| | - S Mehrotra
- AI Laboratory, LPM; ICAR-Indian Veterinary Research Institute; Izatnagar India
| | - MR Verma
- Division of LES & IT; ICAR-Indian Veterinary Research Institute; Izatnagar India
| | - AK Singh
- Division of Animal Reproduction; ICAR-Indian Veterinary Research Institute; Izatnagar India
| | - S Nandi
- Centre for Animal Disease Research and Diagnosis; ICAR-Indian Veterinary Research Institute; Izatnagar India
| | - N Srivastava
- Quality Control, Semen Freezing Laboratory; ICAR-Central Institute for Research on Cattle; Meerut India
| | - SK Singh
- Division of Animal Reproduction; ICAR-Indian Veterinary Research Institute; Izatnagar India
| | - TK Goswami
- Immunology Section; Indian Veterinary Research Institute; Izatnagar India
| | - SK Bhure
- Biochemistry and Food Science Sections; Indian Veterinary Research Institute; Izatnagar India
| | - H Kumar
- Division of Animal Reproduction; ICAR-Indian Veterinary Research Institute; Izatnagar India
| | - SK Ghosh
- Division of Animal Reproduction; ICAR-Indian Veterinary Research Institute; Izatnagar India
| |
Collapse
|
42
|
Khanum BNMK, Guha R, Sur VP, Nandi S, Basak SK, Konar A, Hazra S. Pirfenidone inhibits post-traumatic proliferative vitreoretinopathy. Eye (Lond) 2017; 31:1317-1328. [PMID: 28304388 DOI: 10.1038/eye.2017.21] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2016] [Accepted: 01/09/2017] [Indexed: 12/13/2022] Open
Abstract
PurposeThe purpose of the study was to evaluate the efficacy and safety of intravitreal pirfenidone for inhibition of proliferative vitreoretinopathy (PVR) in a model of penetrating ocular injury.Patients and methodsPenetrating trauma was induced on the retina of rabbit and treated either with 0.1 ml of phosphate-buffered saline (PBS) or 0.1 ml of 0.5% pirfenidone, and development of PVR was evaluated clinically and graded after 1 month. Histopathology and immunohistochemistry with transforming growth factor beta (TGFβ), alpha smooth muscle actin (αSMA), and collagen-1 were performed to assess the fibrotic changes. Expression of cytokines in the vitro-retinal tissues at different time points following pirfenidone and PBS injection was examined by RT-PCR. Availability of pirfenidone in the vitreous of rabbit at various time points was determined by high-performance liquid chromatography following injection of 0.1 ml of 0.5% pirfenidone. In normal rabbit eye, 0.1 ml of 0.5% pirfenidone was injected to evaluate any toxic effect.ResultsClinical assessment and grading revealed prevention of PVR formation in pirfenidone-treated animals, gross histology, and histopathology confirmed the observation. Immunohistochemistry showed prevention in the expression of collagen-I, αSMA, and TGFβ in the pirfenidone-treated eyes compared to the PBS-treated eyes. Pirfenidone inhibited increased gene expression of cytokines observed in control eyes. Pirfenidone could be detected up to 48 h in the vitreous of rabbit eye following single intravitreal injection. Pirfenidone did not show any adverse effect following intravitreal injection; eyes were devoid of any abnormal clinical sign, intraocular pressure, and electroretinography did not show any significant change and histology of retina remained unchanged.ConclusionThis animal study shows that pirfenidone might be a potential therapy for PVR. Further clinical study will be useful to evaluate the clinical application of pirfenidone.
Collapse
Affiliation(s)
- B N M K Khanum
- Department of Veterinary Surgery &Radiology, West Bengal University of Animal &Fishery Sciences, Kolkata, India
| | - R Guha
- CSIR-Indian Institute of Chemical Biology, Kolkata, India
| | - V P Sur
- CSIR-Indian Institute of Chemical Biology, Kolkata, India
| | - S Nandi
- CSIR-Indian Institute of Chemical Biology, Kolkata, India
| | | | - A Konar
- CSIR-Indian Institute of Chemical Biology, Kolkata, India
| | - S Hazra
- Department of Veterinary Surgery &Radiology, West Bengal University of Animal &Fishery Sciences, Kolkata, India
| |
Collapse
|
43
|
Patra S, Mishra G, Dash SK, Verma DK, Nandi S, Jayasankar P, Routray P. Transplantation Worthiness of Cryopreserved Germ Cells of Indian Major Carp Rohu, <i>Labeo rohita</i>. CURR SCI INDIA 2016. [DOI: 10.18520/cs/v111/i4/739-746] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
|
44
|
Gautam A, Sharma A, Jaiswal S, Fatma S, Arora V, Iquebal MA, Nandi S, Sundaray JK, Jayasankar P, Rai A, Kumar D. Development of Antimicrobial Peptide Prediction Tool for Aquaculture Industries. Probiotics Antimicrob Proteins 2016; 8:141-9. [DOI: 10.1007/s12602-016-9215-0] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
|
45
|
Nandi S, Whyte J, Taylor L, Sherman A, Nair V, Kaiser P, McGrew MJ. Cryopreservation of specialized chicken lines using cultured primordial germ cells. Poult Sci 2016; 95:1905-11. [PMID: 27099306 PMCID: PMC4988548 DOI: 10.3382/ps/pew133] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/22/2016] [Indexed: 01/03/2023] Open
Abstract
Biosecurity and sustainability in poultry production requires reliable germplasm conservation. Germplasm conservation in poultry is more challenging in comparison to other livestock species. Embryo cryopreservation is not feasible for egg-laying animals, and chicken semen conservation has variable success for different chicken breeds. A potential solution is the cryopreservation of the committed diploid stem cell precursors to the gametes, the primordial germ cells ( PGCS: ). Primordial germ cells are the lineage-restricted cells found at early embryonic stages in birds and form the sperm and eggs. We demonstrate here, using flocks of partially inbred, lower-fertility, major histocompatibility complex- ( MHC-: ) restricted lines of chicken, that we can easily derive and cryopreserve a sufficient number of independent lines of male and female PGCs that would be sufficient to reconstitute a poultry breed. We demonstrate that germ-line transmission can be attained from these PGCs using a commercial layer line of chickens as a surrogate host. This research is a major step in developing and demonstrating that cryopreserved PGCs could be used for the biobanking of specialized flocks of birds used in research settings. The prospective application of this technology to poultry production will further increase sustainability to meet current and future production needs.
Collapse
Affiliation(s)
- S Nandi
- The Roslin Institute and Royal Dick School of Veterinary Studies, University of Edinburgh, Easter Bush Campus, Midlothian, EH25 9RG, UK
| | - J Whyte
- The Roslin Institute and Royal Dick School of Veterinary Studies, University of Edinburgh, Easter Bush Campus, Midlothian, EH25 9RG, UK
| | - L Taylor
- The Roslin Institute and Royal Dick School of Veterinary Studies, University of Edinburgh, Easter Bush Campus, Midlothian, EH25 9RG, UK
| | - A Sherman
- The Roslin Institute and Royal Dick School of Veterinary Studies, University of Edinburgh, Easter Bush Campus, Midlothian, EH25 9RG, UK
| | - V Nair
- Avian Oncogenic Virus Group, The Pirbright Institute, Ash Road, Woking, Guildford, Surrey, GU24 0NF, UK
| | - P Kaiser
- The Roslin Institute and Royal Dick School of Veterinary Studies, University of Edinburgh, Easter Bush Campus, Midlothian, EH25 9RG, UK
| | - M J McGrew
- The Roslin Institute and Royal Dick School of Veterinary Studies, University of Edinburgh, Easter Bush Campus, Midlothian, EH25 9RG, UK
| |
Collapse
|
46
|
Kundu S, Roy S, Nandi S, Ukil B, Lyndem LM. Senna alexandrina Mill. induced ultrastructural changes on Hymenolepis diminuta. J Parasit Dis 2016; 41:147-154. [PMID: 28316404 DOI: 10.1007/s12639-016-0768-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2015] [Accepted: 03/08/2016] [Indexed: 12/19/2022] Open
Abstract
Senna alexandrina Mill. has been used for antimicrobial activity. In the present study, the crude ethanolic extract of the plant and a synthetic compound Sennoside were tested in vitro on Hymenolepis diminuta to evaluate its potential anthelmintic efficacy through ultrastructural changes. Worms were maintained between rat model and beetle and the test parasites were exposed to different concentrations of crude ethanolic leaf extracts of S. alexandrina. Praziquantel was used as a reference drug. Dose dependent efficacy was observed in terms of motility and time of mortality in all treated parasites. Ultrastructural micrography revealed irrevocable destruction all over the body tegument accompanied with sloughing of microtriches and swellings of the basal lamina. Vacuolization of the syncytium along with sparsely cytoplasmic cytons and depletion of parenchymatous layer were observed accompanied by deformities in the cell organelles. Extensive deformities in the tegument indicates that the plant extract alter membrane permeability of the parasite leading to paralysis and subsequent death. Thus, S. alexandrina can be regarded as a potential anthelmintic agent.
Collapse
Affiliation(s)
- S Kundu
- Parasitology Research Laboratory, Department of Zoology, Visva-Bharati University, Santiniketan, West Bengal 731235 India
| | - S Roy
- Parasitology Research Laboratory, Department of Zoology, Visva-Bharati University, Santiniketan, West Bengal 731235 India
| | - S Nandi
- Parasitology Research Laboratory, Department of Zoology, Visva-Bharati University, Santiniketan, West Bengal 731235 India
| | - B Ukil
- Parasitology Research Laboratory, Department of Zoology, Visva-Bharati University, Santiniketan, West Bengal 731235 India
| | - Larisha Mawkhlieng Lyndem
- Parasitology Research Laboratory, Department of Zoology, Visva-Bharati University, Santiniketan, West Bengal 731235 India
| |
Collapse
|
47
|
Konar S, Guha R, Kundu B, Nandi S, Ghosh TK, Kundu SC, Konar A, Hazra S. Silk fibroin hydrogel as physical barrier for prevention of post hernia adhesion. Hernia 2016; 21:125-137. [DOI: 10.1007/s10029-016-1484-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2015] [Accepted: 03/16/2016] [Indexed: 12/25/2022]
|
48
|
|
49
|
Spencer A, Spruell C, Nandi S, Wong M, Creixell M, Baker AB. A high-throughput mechanofluidic screening platform for investigating tumor cell adhesion during metastasis. Lab Chip 2016; 16:142-52. [PMID: 26584160 PMCID: PMC4691538 DOI: 10.1039/c5lc00994d] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
The metastatic spread of cancer is a major barrier to effective and curative therapies for cancer. During metastasis, tumor cells intravasate into the vascular system, survive in the shear forces and immunological environment of the circulation, and then extravasate into secondary tumor sites. Biophysical forces are potent regulators of cancer biology and are key in many of the steps of metastasis. In particular, the adhesion of circulating cells is highly dependent upon competing forces between cell adhesion receptors and the shear stresses due to fluid flow. Conventional in vitro assays for drug development and the mechanistic study of metastasis are often carried out in the absence of fluidic forces and, consequently, are poorly representative of the true biology of metastasis. Here, we present a novel high-throughput approach to studying cell adhesion under flow that uses a multi-well, mechanofluidic flow system to interrogate adhesion of cancer cell to endothelial cells, extracellular matrix and platelets under physiological shear stresses. We use this system to identify pathways and compounds that can potentially be used to inhibit cancer adhesion under flow by screening anti-inflammatory compounds, integrin inhibitors and a kinase inhibitor library. In particular, we identify several small molecule inhibitors of FLT-3 and AKT that are potent inhibitors of cancer cell adhesion to endothelial cells and platelets under flow. In addition, we found that many kinase inhibitors lead to increased adhesion of cancer cells in flow-based but not static assays. This finding suggests that even compounds that reduce cell proliferation might also enhance cancer cell adhesion during metastasis. Overall, our results validate a novel platform for investigating the mechanisms of cell adhesion under biophysical flow conditions and identify several potential inhibitors of cancer cell adhesion during metastasis.
Collapse
Affiliation(s)
- A Spencer
- Department of Biomedical Engineering, University of Texas at Austin, Austin, TX, USA.
| | - C Spruell
- Department of Biomedical Engineering, University of Texas at Austin, Austin, TX, USA.
| | - S Nandi
- Department of Biomedical Engineering, University of Texas at Austin, Austin, TX, USA.
| | - M Wong
- Department of Biomedical Engineering, University of Texas at Austin, Austin, TX, USA.
| | - M Creixell
- Department of Biomedical Engineering, University of Texas at Austin, Austin, TX, USA.
| | - A B Baker
- Department of Biomedical Engineering, University of Texas at Austin, Austin, TX, USA. and Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX, USA
| |
Collapse
|
50
|
Chanda S, Nandi S, Chawla-Sarkar M. Rotavirus-induced miR-142-5p elicits proviral milieu by targeting non-canonical transforming growth factor beta signalling and apoptosis in cells. Cell Microbiol 2015; 18:733-47. [PMID: 26572508 DOI: 10.1111/cmi.12544] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2015] [Revised: 11/05/2015] [Accepted: 11/10/2015] [Indexed: 12/18/2022]
Abstract
MicroRNA (miRNA) expression is significantly influenced by viral infection, because of either host antiviral defences or proviral factors resulting in the modulation of viral propagation. This study was undertaken to identify and analyse the significance of cellular miRNAs during rotavirus (SA11 or KU) infection. Sixteen differentially regulated miRNAs were identified during rotavirus infection of which hsa-miR-142-5p was up-regulated and validated by quantitative polymerase chain reaction. Exogenous expression of miR-142-5p inhibitor resulted in a significant reduction of viral titer indicating proviral role of miR-142-5p. Functional studies of hsa-miR-142-5p identified its role in transforming growth factor beta (TGFβ) signalling as TGFβ receptor 2 and SMAD3 were degraded during both hsa-miR-142-5p overexpression and rotavirus infection. TGFβ is induced during rotavirus infection, which may promote apoptosis by activation of non-canonical pathways in HT29 cells. However, up-regulated miR-142-5p resulted in the inhibition of TGFβ-induced apoptosis suggesting its anti-apoptotic function. Rotavirus NSP5 was identified as a regulator of miR-142-5p expression. Concurrently, NSP5-HT29 cells showed inhibition of TGFβ-induced apoptosis and epithelial to mesenchymal transition by blocking non-canonical pathways. Overall, the study identified proviral function of hsa-miR-142-5p during rotavirus infection. In addition, modulation of TGFβ-induced non-canonical signalling in microsatellite stable colon cancer cells can be exploited for cancer therapeutics.
Collapse
Affiliation(s)
- Shampa Chanda
- Division of Virology, National Institute of Cholera and Enteric Diseases, P-33, C.I.T. Road Scheme-XM, Beliaghata, Kolkata, West Bengal, 700010, India
| | - Satabdi Nandi
- Division of Virology, National Institute of Cholera and Enteric Diseases, P-33, C.I.T. Road Scheme-XM, Beliaghata, Kolkata, West Bengal, 700010, India
| | - Mamta Chawla-Sarkar
- Division of Virology, National Institute of Cholera and Enteric Diseases, P-33, C.I.T. Road Scheme-XM, Beliaghata, Kolkata, West Bengal, 700010, India
| |
Collapse
|