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Ramadan AMAA, Zidan SAH, Shehata RM, El-Sheikh HH, Ameen F, Stephenson SL, Al-Bedak OAHM. Author Correction: Antioxidant, antibacterial, and molecular docking of methyl ferulate and oleic acid produced by Aspergillus pseudodeflectus AUMC 15761 utilizing wheat bran. Sci Rep 2024; 14:8226. [PMID: 38589519 PMCID: PMC11001931 DOI: 10.1038/s41598-024-58336-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/10/2024] Open
Affiliation(s)
| | - Sabry Ahmed Hussein Zidan
- Department of Pharmacognosy, Faculty of Pharmacy, Al-Azhar University, Assiut Branch, Assiut, 71524, Egypt
| | - Reda Mohamed Shehata
- Department of Botany and Microbiology, Faculty of Science, Al Azhar University, Cairo, Egypt
- The Regional Center for Mycology and Biotechnology (RCMB), Al Azhar University, Cairo, Egypt
| | - Hussein Hosny El-Sheikh
- Department of Botany and Microbiology, Faculty of Science, Al Azhar University, Cairo, Egypt
- The Regional Center for Mycology and Biotechnology (RCMB), Al Azhar University, Cairo, Egypt
| | - Fuad Ameen
- Department of Botany and Microbiology, College of Science, King Saud University, 11451, Riyadh, Saudi Arabia.
| | - Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, USA
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Ramadan AMAA, Zidan SAH, Shehata RM, El-Sheikh HH, Ameen F, Stephenson SL, Al-Bedak OAHM. Antioxidant, antibacterial, and molecular docking of methyl ferulate and oleic acid produced by Aspergillus pseudodeflectus AUMC 15761 utilizing wheat bran. Sci Rep 2024; 14:3183. [PMID: 38326360 PMCID: PMC10850474 DOI: 10.1038/s41598-024-52045-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Accepted: 01/12/2024] [Indexed: 02/09/2024] Open
Abstract
Secondary metabolites (SMs) are the primary source of therapeutics and lead chemicals in medicine. They have been especially important in the creation of effective cures for conditions such as cancer, malaria, bacterial and fungal infections, neurological and cardiovascular problems, and autoimmune illnesses. In the present study, Aspergillus pseudodeflectus AUMC 15761 was demonstrated to use wheat bran in solid state fermentation (SSF) at optimum conditions (pH 7.0 at 30 °C after 10 days of incubation and using sodium nitrate as a nitrogen source) to produce methyl ferulate and oleic acid with significant antioxidant and antibacterial properties. Gas chromatography-mass spectrometry (GC-MS) analysis of the crude methanol extract revealed eleven peaks that indicated the most common chemical components. Purification of methyl ferulate and oleic acid was carried out by column chromatography, and both compounds were identified by in-depth spectroscopic analysis, including 1D and 2D NMR and HR-ESI-MS. DPPH activity increased as the sample concentration increased. IC50 values of both compounds obtained were 73.213 ± 11.20 and 104.178 ± 9.53 µM, respectively. Also, the MIC value for methyl ferulate against Bacillus subtilis and Staphylococcus aureus was 0.31 mg/mL, while the corresponding MIC values for oleic acid were 1.25 mg/mL and 0.62 mg/mL for both bacterial strains, respectively. Molecular modeling calculations were carried out to reveal the binding mode of methyl ferulate and oleic acid within the binding site of the crucial proteins of Staphylococcus aureus. The docking results were found to be well correlated with the experimental data.
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Affiliation(s)
| | - Sabry Ahmed Hussein Zidan
- Department of Pharmacognosy, Faculty of Pharmacy, Al-Azhar University, Assiut Branch, Assiut, 71524, Egypt
| | - Reda Mohamed Shehata
- Department of Botany & Microbiology, Faculty of Science, Al Azhar University, Cairo, Egypt
- The Regional Center for Mycology and Biotechnology (RCMB), Al Azhar University, Cairo, Egypt
| | - Hussein Hosny El-Sheikh
- Department of Botany & Microbiology, Faculty of Science, Al Azhar University, Cairo, Egypt
- The Regional Center for Mycology and Biotechnology (RCMB), Al Azhar University, Cairo, Egypt
| | - Fuad Ameen
- Department of Botany & Microbiology, College of Science, King Saud University, 11451, Riyadh, Saudi Arabia.
| | - Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, USA
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Zhang Z, Yang Y, Zhao J, Li Y, Stephenson SL, Qiu J, Liu P. Environmental factors influencing the diversity and distribution of dictyostelid cellular slime molds in forest and farmland soils of western China. Microbiol Spectr 2023; 11:e0173223. [PMID: 37962389 PMCID: PMC10715086 DOI: 10.1128/spectrum.01732-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Accepted: 10/04/2023] [Indexed: 11/15/2023] Open
Abstract
IMPORTANCE Soil protists are an essential yet seriously understudied component of the soil microbiome. In this study, 11 new records of dictyostelids belonging to 2 orders, 3 families, and 4 genera were identified from 99 soil samples collected from different elevations and habitats in central Gansu and the southeastern and southcentral portions of Guizhou Province, China. We found that dictyostelid communities were significantly different between Gansu and Guizhou Provinces, apparently in response to different environmental factors. Moreover, dictyostelids were found to have the highest species diversity in mixed forests. Soil pH, temperature, and elevation were determined to be the primary factors that affect the distribution and occurrence of dictyostelids in Guizhou and Gansu Provinces. This work supplements the survey data available for dictyostelids elsewhere in China. These new findings have significant implications for our understanding of the diversity of soil microorganisms.
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Affiliation(s)
- Zhaojuan Zhang
- Engineering Research Center of Edible and Medicinal Fungi, Ministry of Education, Jilin Agricultural University, Changchun, China
| | - Yingkun Yang
- Engineering Research Center of Edible and Medicinal Fungi, Ministry of Education, Jilin Agricultural University, Changchun, China
| | - Jing Zhao
- Engineering Research Center of Edible and Medicinal Fungi, Ministry of Education, Jilin Agricultural University, Changchun, China
| | - Yu Li
- Engineering Research Center of Edible and Medicinal Fungi, Ministry of Education, Jilin Agricultural University, Changchun, China
| | - Steven L. Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas, USA
| | - Junzhi Qiu
- Key Lab of Biopesticide and Chemical Biology, Ministry of Education, State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Pu Liu
- Engineering Research Center of Edible and Medicinal Fungi, Ministry of Education, Jilin Agricultural University, Changchun, China
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Stephenson SL. Past and Ongoing Field-Based Studies of Myxomycetes. Microorganisms 2023; 11:2283. [PMID: 37764126 PMCID: PMC10535080 DOI: 10.3390/microorganisms11092283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Revised: 09/06/2023] [Accepted: 09/08/2023] [Indexed: 09/29/2023] Open
Abstract
Evidence from molecular studies indicates that myxomycetes (also called myxogastrids or plasmodial slime molds) have a long evolutionary history, and the oldest known fossil is from the mid-Cretaceous. However, they were not "discovered" until 1654, when a brief description and a woodcut depicting what is almost certainly the common species Lycogala epidendrum was published. First thought to be fungi, myxomycetes were not universally recognized as completely distinct until well into the twentieth century. Biodiversity surveys for the group being carried out over several years are relatively recent, with what is apparently the first example being carried out in the 1930s. Beginning in the 1980s, a series of such surveys yielded large bodies of data on the occurrence and distribution of myxomycetes in terrestrial ecosystems. The most notable of these were the All Taxa Biodiversity Inventory (ATBI) project carried out in the Great Smoky Mountains National Park, the Planetary Biodiversity Inventory Project (PBI) carried out in localities throughout the world, and the Myxotropic project being carried out throughout the Neotropics. The datasets available from both past and ongoing surveys now allow global and biogeographical patterns of myxomycetes to be assessed for the first time.
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Affiliation(s)
- Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, USA
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Shukur SA, Hassan FM, Fakhry SS, Ameen F, Stephenson SL. Evaluation of microplastic pollution in a lotic ecosystem and its ecological risk. Mar Pollut Bull 2023; 194:115401. [PMID: 37657191 DOI: 10.1016/j.marpolbul.2023.115401] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2023] [Revised: 07/20/2023] [Accepted: 08/06/2023] [Indexed: 09/03/2023]
Abstract
This study investigates the microplastics (MPs) pollution in Tigris River, assessing spatial and temporal variations in water and sediment. MPs presence was high during both seasons 3429.2 MPs/m3 (dry season) and 3363.2 MPs/m3 (wet season) in water, and 121.2 MPs/kg (wet season) and 123.2 MPs/kg (dry season) in sediment. MPs morphology mostly consisted of fibers and fragments, with sizes below 0.5 mm. Transparent and white were the most common colors, and they were primarily composed of polyethylene (PE) and polypropylene (PP). Ecological risk assessment, using the plastic hazard index (PHI), pollution load index (PLI), and potential ecological risk index (PERI), categorized the risk from danger to extreme danger based on PHI, while PLI and PERI indicated a minor risk. These findings provide initial evidence of microplastics pollution in the Tigris River's water and sediment, emphasizing the need for action by decision-makers to mitigate these risks.
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Affiliation(s)
- Shaymaa Arif Shukur
- Department of Biology, College of Science for Women, University of Baghdad, Iraq.
| | - Fikrat M Hassan
- Department of Biology, College of Science for Women, University of Baghdad, Iraq.
| | - Saad Sabah Fakhry
- Ministry of Science and Technology/Food Contamination Research Center, Iraq
| | - Fuad Ameen
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, USA
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Mu T, Chen J, Zhao Z, Zhang W, Stephenson SL, Yang C, Zhu M, Su H, Liu P, Guan X, Qiu J. Morphological and phylogenetic analyzes reveal two new species of Melanconiella from Fujian Province, China. Front Microbiol 2023; 14:1229705. [PMID: 37664128 PMCID: PMC10469505 DOI: 10.3389/fmicb.2023.1229705] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Accepted: 07/31/2023] [Indexed: 09/05/2023] Open
Abstract
Introduction Species of Melanconiella include a diverse array of plant pathogens as well as endophytic fungi. Members of this genus have been frequently collected from the family Betulaceae (birches) in Europe and North America. Little, however, if known concerning the distribution of Melanconiella and/or their potential as pathogens of other plant hosts. Methods Fungi were noted and isolated from diseased leaves of Loropetalum chinense (Chinese fringe flower) and Camellia sinensis (tea) in Fujian Province, China. Genomic DNA was extracted from fungal isolates and the nucleotide sequences of four loci were determined and sued to construct phylogenetic trees. Morphological characteristics of fungal structures were determined via microscopic analyses. Results Four strains and two new species of Melanconiella were isolated from infected leaves of L. chinense and C. sinensis in Fujian Province, China. Based on morphology and a multi-gene phylogeny of the internal transcribed spacer regions with the intervening 5.8S nrRNA gene (ITS), the 28S large subunit of nuclear ribosomal RNA (LSU), the second largest subunit of RNA polymerase II (RPB2), and the translation elongation factor 1-α gene (TEF1-α), Melanconiellaloropetali sp. nov. and Melanconiellacamelliae sp. nov. were identified and described herein. Detailed descriptions, illustrations, and a key to the known species of Melanconiella are provided. Discussion These data identify new species of Melanconiella, expanding the potential range and distribution of these dark septate fungi. The developed keys provide a reference source for further characterization of these fungi.
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Affiliation(s)
- Taichang Mu
- Key Lab of Biopesticide and Chemical Biology, Ministry of Education, State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Jinhui Chen
- Key Lab of Biopesticide and Chemical Biology, Ministry of Education, State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Zhiying Zhao
- Key Lab of Biopesticide and Chemical Biology, Ministry of Education, State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Weibin Zhang
- Key Lab of Biopesticide and Chemical Biology, Ministry of Education, State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Steven L. Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR, United States
| | - Chenjie Yang
- Key Lab of Biopesticide and Chemical Biology, Ministry of Education, State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Mengjia Zhu
- Key Lab of Biopesticide and Chemical Biology, Ministry of Education, State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Hailan Su
- Agricultural BioResources Institute, Fujian Academy of Agricultural Sciences, Fuzhou, China
| | - Pu Liu
- Engineering Research Center of Edible and Medicinal Fungi, Ministry of Education, Jilin Agricultural University, Changchun, China
| | - Xiayu Guan
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Junzhi Qiu
- Key Lab of Biopesticide and Chemical Biology, Ministry of Education, State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
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Yang EF, Dai DQ, Bhat JD, Dawoud TM, Promputtha I, Adikaram N, Stephenson SL, Karunarathna SC, Tibpromma S. Taxonomic and Phylogenetic Studies of Saprobic Fungi Associated with Mangifera indica in Yunnan, China. J Fungi (Basel) 2023; 9:680. [PMID: 37367616 DOI: 10.3390/jof9060680] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2023] [Revised: 06/09/2023] [Accepted: 06/14/2023] [Indexed: 06/28/2023] Open
Abstract
Fungi are a large and diverse group of microorganisms, and although the estimated number of species ranges between 2 and 11 million, only around 150,000 species have been described thus far. The investigation of plant-associated fungi is beneficial for estimating global fungal diversity, for ecosystem conservation, and for the continued development of industry and agriculture. Mango, one of the world's five most economically important fruit crops, is grown in over 100 countries and has been demonstrated to have a great economical value. During surveys of mango-associated saprobic fungi in Yunnan (China), we discovered three new species (Acremoniisimulans hongheensis, Chaenothecopsis hongheensis and Hilberina hongheensis) and five new records. The phylogenetic analyses of multi-gene sequences (LSU, SSU, ITS, rpb2, tef1-α and tub2) coupled with morphological examinations were used to identify all the taxa.
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Affiliation(s)
- Er-Fu Yang
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
- Master of Science Program in Applied Microbiology (International Program), Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Dong-Qin Dai
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
| | - Jayarama D Bhat
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia
- Biology Division, Vishnugupta Vishwavidyapeetam, Ashoke, Gokarna 581326, India
| | - Turki M Dawoud
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia
| | - Itthayakorn Promputtha
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Nimal Adikaram
- National Institute of Fundamental Studies, Kandy 20000, Sri Lanka
| | - Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, USA
| | - Samantha C Karunarathna
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
- National Institute of Fundamental Studies, Kandy 20000, Sri Lanka
| | - Saowaluck Tibpromma
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
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Priyashantha AKH, Dai DQ, Bhat DJ, Stephenson SL, Promputtha I, Kaushik P, Tibpromma S, Karunarathna SC. Plant-Fungi Interactions: Where It Goes? Biology (Basel) 2023; 12:809. [PMID: 37372094 DOI: 10.3390/biology12060809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Revised: 05/29/2023] [Accepted: 05/30/2023] [Indexed: 06/29/2023]
Abstract
Fungi live different lifestyles-including pathogenic and symbiotic-by interacting with living plants. Recently, there has been a substantial increase in the study of phytopathogenic fungi and their interactions with plants. Symbiotic relationships with plants appear to be lagging behind, although progressive. Phytopathogenic fungi cause diseases in plants and put pressure on survival. Plants fight back against such pathogens through complicated self-defense mechanisms. However, phytopathogenic fungi develop virulent responses to overcome plant defense reactions, thus continuing their deteriorative impacts. Symbiotic relationships positively influence both plants and fungi. More interestingly, they also help plants protect themselves from pathogens. In light of the nonstop discovery of novel fungi and their strains, it is imperative to pay more attention to plant-fungi interactions. Both plants and fungi are responsive to environmental changes, therefore construction of their interaction effects has emerged as a new field of study. In this review, we first attempt to highlight the evolutionary aspect of plant-fungi interactions, then the mechanism of plants to avoid the negative impact of pathogenic fungi, and fungal strategies to overcome the plant defensive responses once they have been invaded, and finally the changes of such interactions under the different environmental conditions.
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Affiliation(s)
- A K Hasith Priyashantha
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
| | - Dong-Qin Dai
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
| | - Darbhe J Bhat
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia
- Biology Division, Vishnugupta Vishwavidyapeetam, Gokarna 581326, India
| | - Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, USA
| | - Itthayakorn Promputtha
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Prashant Kaushik
- Instituto de ConservaciónyMejora de la Agrodiversidad Valenciana, Universitat Politècnica de València, 46022 Valencia, Spain
| | - Saowaluck Tibpromma
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
| | - Samantha C Karunarathna
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
- National Institute of Fundamental Studies (NIFS), Hantana Road, Kandy 20000, Sri Lanka
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Ramadan AMAA, Shehata RM, El-Sheikh HH, Ameen F, Stephenson SL, Zidan SAH, Al-Bedak OAM. Exploitation of Sugarcane Bagasse and Environmentally Sustainable Production, Purification, Characterization, and Application of Lovastatin by Aspergillus terreus AUMC 15760 under Solid-State Conditions. Molecules 2023; 28:molecules28104048. [PMID: 37241788 DOI: 10.3390/molecules28104048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Revised: 05/06/2023] [Accepted: 05/10/2023] [Indexed: 05/28/2023] Open
Abstract
Using the internal transcribed spacer (ITS) region for identification, three strains of Aspergillus terreus were identified and designated AUMC 15760, AUMC 15762, and AUMC 15763 for the Assiut University Mycological Centre culture collection. The ability of the three strains to manufacture lovastatin in solid-state fermentation (SSF) using wheat bran was assessed using gas chromatography-mass spectroscopy (GC-MS). The most potent strain was strain AUMC 15760, which was chosen to ferment nine types of lignocellulosic waste (barley bran, bean hay, date palm leaves, flax seeds, orange peels, rice straw, soy bean, sugarcane bagasse, and wheat bran), with sugarcane bagasse turning out to be the best substrate. After 10 days at pH 6.0 at 25 °C using sodium nitrate as the nitrogen source and a moisture content of 70%, the lovastatin output reached its maximum quantity (18.2 mg/g substrate). The medication was produced in lactone form as a white powder in its purest form using column chromatography. In-depth spectroscopy examination, including 1H, 13C-NMR, HR-ESI-MS, optical density, and LC-MS/MS analysis, as well as a comparison of the physical and spectroscopic data with published data, were used to identify the medication. At an IC50 of 69.536 ± 5.73 µM, the purified lovastatin displayed DPPH activity. Staphylococcus aureus and Staphylococcus epidermidis had MICs of 1.25 mg/mL, whereas Candida albicans and Candida glabrata had MICs of 2.5 mg/mL and 5.0 mg/mL, respectively, against pure lovastatin. As a component of sustainable development, this study offers a green (environmentally friendly) method for using sugarcane bagasse waste to produce valuable chemicals and value-added commodities.
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Affiliation(s)
- Ahmed M A A Ramadan
- Department of Botany & Microbiology, Faculty of Science, Al Azhar University, Cairo 11511, Egypt
| | - Reda M Shehata
- Department of Botany & Microbiology, Faculty of Science, Al Azhar University, Cairo 11511, Egypt
- The Regional Center for Mycology and Biotechnology (RCMB), Al Azhar University, Cairo 11511, Egypt
| | - Hussein H El-Sheikh
- Department of Botany & Microbiology, Faculty of Science, Al Azhar University, Cairo 11511, Egypt
- The Regional Center for Mycology and Biotechnology (RCMB), Al Azhar University, Cairo 11511, Egypt
| | - Fuad Ameen
- Department of Botany & Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, USA
| | - Sabry A H Zidan
- Department of Pharmacognosy, Faculty of Pharmacy, Al-Azhar University, Assiut Branch, Assiut 71524, Egypt
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Du TY, Dai DQ, Mapook A, Lu L, Stephenson SL, Suwannarach N, Elgorban AM, Al-Rejaie S, Karunarathna SC, Tibpromma S. Additions to Rhytidhysteron ( Hysteriales, Dothideomycetes) in China. J Fungi (Basel) 2023; 9:jof9020148. [PMID: 36836263 PMCID: PMC9958654 DOI: 10.3390/jof9020148] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Revised: 01/14/2023] [Accepted: 01/18/2023] [Indexed: 01/24/2023] Open
Abstract
In this study, twelve terrestrial hysteriaceous saprobic fungi growing on different pieces of dead wood were collected from Yunnan Province, China. All hysteriaceous strains isolated in this study tallied with the general characteristics associated with Rhytidhysteron. Detailed morphological characteristics and combined multigene phylogeny of LSU, ITS, SSU, and TEF showed that the twelve hysteriaceous fungi strains represent four distinct new species, and seven new host or geographical records of Rhytidhysteron. Based on morphological and phylogenetic evidence, the four new species (Rhytidhysteron bannaense sp. nov., R. coffeae sp. nov., R. mengziense sp. nov., and R. yunnanense sp. nov.) expand the number of species of Rhytidhysteron from thirty-three to thirty-seven, while seven new geographical records expand the records of Rhytidhysteron in China from six to thirteen. In addition, 10 new Rhytidhysteron host records are reported for the first time, thus expanding the known hosts for Rhytidhysteron from 52 to 62. Full descriptions, images of the morphology, and phylogenetic analyses to show the position of the Rhytidhysteron taxa are provided. In addition, the present study summarizes the main morphological characteristics, host associations, and locations of this genus.
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Affiliation(s)
- Tian-Ye Du
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Dong-Qin Dai
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
| | - Ausana Mapook
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Li Lu
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Steven L. Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, USA
| | - Nakarin Suwannarach
- Research Center of Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Abdallah M. Elgorban
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Salim Al-Rejaie
- Department of Pharmacology & Toxicology, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia
| | - Samantha C. Karunarathna
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
- Correspondence: (S.C.K.); (S.T.)
| | - Saowaluck Tibpromma
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
- Correspondence: (S.C.K.); (S.T.)
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11
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Yang EF, Karunarathna SC, Dai DQ, Stephenson SL, Elgorban AM, Al-Rejaie S, Xiong YR, Promputtha I, Samarakoon MC, Tibpromma S. Taxonomy and Phylogeny of Fungi Associated with Mangifera indica from Yunnan, China. J Fungi (Basel) 2022; 8:1249. [PMID: 36547582 PMCID: PMC9780836 DOI: 10.3390/jof8121249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 11/24/2022] [Accepted: 11/24/2022] [Indexed: 11/29/2022] Open
Abstract
During investigations of saprobic fungi associated with mango (Mangifera indica) in Baoshan and Honghe of Yunnan Province (China), fungal taxa belonging to the orders Botryosphaeriales, Calosphaeriales, Chaetothyriales, Diaporthales, and Xylariales were recorded. Morphological examinations coupled with phylogenetic analyses of multigene sequences (ITS, LSU, SSU, tef1-α, rpb1, rpb2, β-tubulin and CAL) were used to identify the fungal taxa. A new genus viz. Mangifericola, four new species viz. Cyphellophora hongheensis, Diaporthe hongheensis, Hypoxylon hongheensis, and Mangifericola hongheensis, four new host and geographical records viz. Aplosporella artocarpi, Hypomontagnella monticulosa, Paraeutypella citricola and Pleurostoma ootheca, and two new collections of Lasiodiplodia are reported.
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Affiliation(s)
- Er-Fu Yang
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
- Master of Science Program in Applied Microbiology (International Program), Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Samantha C. Karunarathna
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
| | - Dong-Qin Dai
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
| | - Steven L. Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, USA
| | - Abdallah M. Elgorban
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 12211, Saudi Arabia
| | - Salim Al-Rejaie
- Department of Pharmacology & Toxicology, College of Pharmacy, King Saud University, Riyadh 12211, Saudi Arabia
| | - Yin-Ru Xiong
- Innovative Institute for Plant Health, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, China
| | - Itthayakorn Promputtha
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
- Environmental Science Research Center, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Milan C. Samarakoon
- Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Saowaluck Tibpromma
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
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12
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Du TY, Karunarathna SC, Zhang X, Dai DQ, Mapook A, Suwannarach N, Xu JC, Stephenson SL, Elgorban AM, Al-Rejaie S, Tibpromma S. Endophytic Fungi Associated with Aquilaria sinensis (Agarwood) from China Show Antagonism against Bacterial and Fungal Pathogens. J Fungi (Basel) 2022; 8:1197. [PMID: 36422018 PMCID: PMC9697865 DOI: 10.3390/jof8111197] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2022] [Revised: 11/09/2022] [Accepted: 11/10/2022] [Indexed: 11/25/2023] Open
Abstract
Agarwood is the most expensive non-construction wood product in the world. As a therapeutic agent, agarwood can cure some diseases, but few studies have been carried out on the antagonistic abilities of endophytic fungi associated with agarwood. Agarwood is mainly found in the genus Aquiaria. The objectives of this study are to understand the antimicrobial activities and their potential as biocontrol agents of the endophytic fungi of Aquilaria sinensis. First, fresh samples of A. sinensis were collected from Yunnan and Guangdong Provinces in 2020-2021, and the endophytic fungi were isolated and identified to genus level based on the phylogenetic analyses of the Internal Transcribed Spacer (ITS) region. In this bioassay, 47 endophytic strains were selected to check their bioactivities against three bacterial pathogens viz. Erwinia amylovora, Pseudomonas syringae, and Salmonella enterica; and three fungal pathogens viz. Alternaria alternata, Botrytis cinerea, and Penicillium digitatum. The antibiosis test was carried out by the dual culture assay (10 days), and among the 47 strains selected, 40 strains belong to 18 genera viz. Alternaria, Annulohypoxylon, Aspergillus, Botryosphaeria, Colletotrichum, Corynespora, Curvularia, Daldinia, Diaporthe, Fusarium, Lasiodiplodia, Neofusicoccum, Neopestalotiopsis, Nigrospora, Paracamarosporium, Pseudopithomyces, Trichoderma, Trichosporon and one strain belongs to Xylariaceae had antimicrobial activities. In particular, Lasiodiplodia sp. (YNA-D3) showed the inhibition of all the bacterial and fungal pathogens with a significant inhibition rate. In addition, the strains viz; Curvularia sp. (GDA-3A9), Diaporthe sp. (GDA-2A1), Lasiodiplodia sp. (YNA-D3), Neofusicoccum sp. (YNA-1C3), Nigrospora sp. (GDA-4C1), and Trichoderma sp. (YNA-1C1) showed significant antimicrobial activities and are considered worthy of further studies to identify individual fungal species and their bioactive compounds. This study enriches the diversity of endophytic fungi associated with agarwood, and their potential antagonistic effects against bacterial and fungal pathogens.
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Affiliation(s)
- Tian-Ye Du
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Samantha C. Karunarathna
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
| | - Xian Zhang
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
| | - Dong-Qin Dai
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
| | - Ausana Mapook
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Nakarin Suwannarach
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Jian-Chu Xu
- Centre for Mountain Futures, Kunming Institute of Botany, Kunming 650201, China
| | - Steven L. Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, USA
| | - Abdallah M. Elgorban
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Salim Al-Rejaie
- Department of Pharmacology & Toxicology, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia
| | - Saowaluck Tibpromma
- Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China
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13
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Deshwal A, Stephenson SL, Panwar P, DeGregorio BA, Kannan R, Willson JD. Foraging habitat selection of shrubland bird community in tropical dry forest. Ecol Evol 2022. [DOI: 10.1002/ece3.9192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022] Open
Affiliation(s)
- Anant Deshwal
- Department of Biological Sciences University of Arkansas Fayetteville Arkansas USA
| | - Steven L. Stephenson
- Department of Biological Sciences University of Arkansas Fayetteville Arkansas USA
| | - Pooja Panwar
- Department of Biological Sciences Dartmouth College Hanover New Hampshire USA
| | - Brett A. DeGregorio
- U.S. Geological Survey Fish and Wildlife Cooperative Research Unit University of Arkansas Fayetteville Arkansas USA
| | - Ragupathy Kannan
- Department of Biological Sciences University of Arkansas Fort Smith Arkansas USA
| | - John D. Willson
- Department of Biological Sciences University of Arkansas Fayetteville Arkansas USA
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14
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Lu L, Karunarathna SC, Hyde KD, Suwannarach N, Elgorban AM, Stephenson SL, Al-Rejaie S, Jayawardena RS, Tibpromma S. Endophytic Fungi Associated with Coffee Leaves in China Exhibited In Vitro Antagonism against Fungal and Bacterial Pathogens. J Fungi (Basel) 2022; 8:jof8070698. [PMID: 35887454 PMCID: PMC9317674 DOI: 10.3390/jof8070698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Revised: 06/24/2022] [Accepted: 06/28/2022] [Indexed: 11/17/2022] Open
Abstract
Coffee endophytes have been studied for almost 74 years, and several studies have demonstrated coffee-endophytic fungi with antibacterial and antifungal potential for human and plant pathogens. In this study, we isolated and identified a total of 235 strains of endophytic fungi from coffee leaf tissues collected in four coffee plantations in Pu’er city, Yunnan province, China. Molecular identification was carried out using maximum likelihood phylogenetic analysis of nuclear ribosomal internal transcribed spacer (ITS1-5.8S rDNA-ITS2) sequences, while the colonization rate and the isolation frequency were also calculated. Two pathogenic fungi (Alternaria alternata and Penicillium digitatum) and two pathogenic bacteria (Pseudomonas syringae and Salmonella enterica subsp. enterica) were used for screening the antagonistic activities of 61 strains of coffee-endophytic fungi by a dual-culture test assay while maximum likelihood phylogenetic analysis confirmed their natural classification. This is the first study of coffee-leaf-endophytic fungal diversity in China, and the results revealed that coffee-endophytic fungi from this study belong to the Ascomycota, distributed among two classes, 10 orders, and 17 families. Concurrently, endophytic fungi isolates distributed in Arthrinium, Biscogniauxia, Daldinia, Diaporthe, and Nigrospora showed strong antagonistic activities against the pathogens. For the pathogens Alternaria alternata and Pseudomonas syringae, Nigrospora XCE-7 showed the best inhibitory effects with inhibition rates of 71.76% and 61.11%, respectively. For the pathogen Penicillium digitatum, Daldinia ME-9 showed the best inhibitory effect with a 74.67% inhibition rate, while Biscogniauxia PTE-7 and Daldinia T5E-1-3 showed the best inhibitory effect with a rate of 60.42% against the pathogen Salmonella enterica subsp. enterica. Overall, our study shows the diversity of coffee endophytes in four coffee-growing areas in Pu’er city, Yunnan province, China, and their potential use as biological control agents against two fungal and two bacterial pathogens.
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Affiliation(s)
- Li Lu
- Center for Yunnan Plateau Biological Resources Protection and Utilization, Yunnan Engineering Research Center of Fruit Wine, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China; (L.L.); (S.C.K.)
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand; (K.D.H.); (R.S.J.)
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Samantha C. Karunarathna
- Center for Yunnan Plateau Biological Resources Protection and Utilization, Yunnan Engineering Research Center of Fruit Wine, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China; (L.L.); (S.C.K.)
| | - Kevin D. Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand; (K.D.H.); (R.S.J.)
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Innovative Institute for Plant Health, Zhong Kai University, Guangzhou 510550, China
| | - Nakarin Suwannarach
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand;
| | - Abdallah M. Elgorban
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh P.O. Box 145111, Saudi Arabia;
| | - Steven L. Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, USA;
| | - Salim Al-Rejaie
- Department of Pharmacology & Toxicology, College of Pharmacy, King Saud University, Riyadh P.O. Box 145111, Saudi Arabia;
| | - Ruvishika S. Jayawardena
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand; (K.D.H.); (R.S.J.)
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - Saowaluck Tibpromma
- Center for Yunnan Plateau Biological Resources Protection and Utilization, Yunnan Engineering Research Center of Fruit Wine, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China; (L.L.); (S.C.K.)
- Correspondence:
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15
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Ameen F, AlNAdhari S, Yassin MA, Al-Sabri A, Almansob A, Alqahtani N, Stephenson SL. Desert soil fungi isolated from Saudi Arabia: cultivable fungal community and biochemical production. Saudi J Biol Sci 2021; 29:2409-2420. [PMID: 35531195 PMCID: PMC9072920 DOI: 10.1016/j.sjbs.2021.12.011] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2021] [Revised: 11/20/2021] [Accepted: 12/05/2021] [Indexed: 02/08/2023] Open
Abstract
Desert soils harbor fungi that have survived under highly stressed conditions of high temperature and little available moisture. This study was designed to survey the communities of cultivable fungi in the desert soils of the Arabian Peninsula and to screen the fungi for the potentially valuable antioxidants (flavonoids, phenols, saponins, steroids, tannins, terpenoids, and alkaloids) and enzymes (cellulase, laccase, lipase, protease, amylase, and chitinase). Desert soil was sampled at 30 localities representing different areas of Saudi Arabia and studied for physico-chemical soil properties. Five types of soil texture (sand, loamy sand, sandy loam, silty loam, and sandy clay loam) were observed. A total of 25 saprotrophic species was identified molecularly from 68 isolates. Our survey revealed 13 culturable fungal species that have not been reported previously from Arabian desert soils and six more species not reported from Saudi Arabian desert soils. The most commonly recorded genera were Aspergillus (isolated from 20 localities) and Penicillium (6 localities). The measurements of biochemicals revealed that antioxidants were produced by 49 and enzymes by 52 isolates; only six isolates did not produce any biochemicals. The highest biochemical activity was observed for the isolates Fusarium brachygibbosum and A. phoenicis. Other active isolates were A. proliferans and P. chrysogenum. The same species, for instance, A. niger had isolates of both high and low biochemical activities. Principal component analysis gave a tentative indication of a relationship between the biochemical activity of fungi isolated from soil and soil texture variables namely the content of silt, clay and sand. However, any generalizable relation between soil properties and fungal biochemical activities cannot be suggested. Each fungal isolate is probable to produce several antioxidants and enzymes, as shown by the correlation within the compound groups. Desert soil warrants further research as a promising source of biochemicals.
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16
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Karunarathna A, Tibpromma S, Jayawardena RS, Nanayakkara C, Asad S, Xu J, Hyde KD, Karunarathna SC, Stephenson SL, Lumyong S, Kumla J. Fungal Pathogens in Grasslands. Front Cell Infect Microbiol 2021; 11:695087. [PMID: 34434901 PMCID: PMC8381356 DOI: 10.3389/fcimb.2021.695087] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2021] [Accepted: 06/21/2021] [Indexed: 01/02/2023] Open
Abstract
Grasslands are major primary producers and function as major components of important watersheds. Although a concise definition of grasslands cannot be given using a physiognomic or structural approach, grasslands can be described as vegetation communities experiencing periodical droughts and with canopies dominated by grasses and grass-like plants. Grasslands have a cosmopolitan distribution except for the Antarctic region. Fungal interactions with grasses can be pathogenic or symbiotic. Herbivorous mammals, insects, other grassland animals, and fungal pathogens are known to play important roles in maintaining the biomass and biodiversity of grasslands. Although most pathogenicity studies on the members of Poaceae have been focused on economically important crops, the plant-fungal pathogenic interactions involved can extend to the full range of ecological circumstances that exist in nature. Hence, it is important to delineate the fungal pathogen communities and their interactions in man-made monoculture systems and highly diverse natural ecosystems. A better understanding of the key fungal players can be achieved by combining modern techniques such as next-generation sequencing (NGS) together with studies involving classic phytopathology, taxonomy, and phylogeny. It is of utmost importance to develop experimental designs that account for the ecological complexity of the relationships between grasses and fungi, both above and below ground. In grasslands, loss in species diversity increases interactions such as herbivory, mutualism, predation or infectious disease transmission. Host species density and the presence of heterospecific host species, also affect the disease dynamics in grasslands. Many studies have shown that lower species diversity increases the severity as well as the transmission rate of fungal diseases. Moreover, communities that were once highly diverse but have experienced decreased species richness and dominancy have also shown higher pathogenicity load due to the relaxed competition, although this effect is lower in natural communities. This review addresses the taxonomy, phylogeny, and ecology of grassland fungal pathogens and their interactions in grassland ecosystems.
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Affiliation(s)
- Anuruddha Karunarathna
- Centre for Mountain Futures, Kunming Institute of Botany, Kunming, China.,Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai, Thailand.,Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
| | - Saowaluck Tibpromma
- Centre for Mountain Futures, Kunming Institute of Botany, Kunming, China.,CIFOR-ICRAF China Program, World Agroforestry (ICRAF), Kunming, China
| | - Ruvishika S Jayawardena
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand.,School of Science, Mae Fah Luang University, Chiang Rai, Thailand
| | | | - Suhail Asad
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China
| | - Jianchu Xu
- Centre for Mountain Futures, Kunming Institute of Botany, Kunming, China.,CIFOR-ICRAF China Program, World Agroforestry (ICRAF), Kunming, China
| | - Kevin D Hyde
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, Thailand
| | - Samantha C Karunarathna
- Centre for Mountain Futures, Kunming Institute of Botany, Kunming, China.,CIFOR-ICRAF China Program, World Agroforestry (ICRAF), Kunming, China
| | - Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR, United States
| | - Saisamorn Lumyong
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand.,Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand.,Academy of Science, The Royal Society of Thailand, Bangkok, Thailand
| | - Jaturong Kumla
- Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand.,Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
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17
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Abstract
Five specimens, initially presumed to be Fuligo septica or Mucilago crustacea, were collected from Jilin Province and the Inner Mongolia Autonomous Region in China, but all five turned out to represent a new aethaloid species, Didymium yulii. This new species is characterized by pseudocapillitia without capillitia and an aethalioid fruiting body, features that are morphologically distinct from those of any other species of Didymium. To assess the phylogenetic relationships between D. yulii and other members of Didymium and in the Didymiaceae, sequences from two nonoverlapping targeted portions of nuc 18S rDNA (~450 bp and ~1050 bp) and translation elongation factor 1-alpha (tef1) were obtained and analyzed. The results indicate that D. yulii forms a single clade separate from other species of Didymium and the clade that contains M. crustacea, which strongly supports the identification of the five specimens as a new species.
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Affiliation(s)
- Feng-Yun Zhao
- Engineering Research Center of Edible and Medicinal Fungi, Ministry of Education, Jilin Agricultural University, Changchun 130118, Jilin Province, People's Republic of China.,College of Life Sciences, Baicheng Normal University, Baicheng 137000, Jilin Province, People's Republic of China
| | - Shu-Yan Liu
- Engineering Research Center of Edible and Medicinal Fungi, Ministry of Education, Jilin Agricultural University, Changchun 130118, Jilin Province, People's Republic of China.,College of Plant Protection, Jilin Agricultural University, Changchun 130118, Jilin Province, People's Republic of China
| | - Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas 72701
| | - Tom Hsiang
- Environmental Sciences, University of Guelph, Guelph, Ontario, N1G 2W1, Canada
| | - Bao Qi
- Engineering Research Center of Edible and Medicinal Fungi, Ministry of Education, Jilin Agricultural University, Changchun 130118, Jilin Province, People's Republic of China
| | - Zhuang Li
- Shandong Provincial Key Laboratory for Biology of Vegetable Diseases and Insect Pests, College of Plant Protection, Shandong Agricultural University, Tai'an 271018, Shandong Province, People's Republic of China
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18
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Do TTH, Lai TNB, Stephenson SL, Tran HTM. Cytotoxicity activities and chemical characteristics of exopolysaccharides and intracellular polysaccharides of Physarum polycephalum microplasmodia. BMC Biotechnol 2021; 21:28. [PMID: 33773573 PMCID: PMC8005236 DOI: 10.1186/s12896-021-00688-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Accepted: 03/15/2021] [Indexed: 11/24/2022] Open
Abstract
BACKGROUND Microbial polysaccharides have been reported to possess remarkable bioactivities. Physarum polycephalum is a species of slime mold for which the microplasmodia are capable of rapid growth and can produce a significant amount of cell wall-less biomass. There has been a limited understanding of the polysaccharides produced by microplasmodia of slime molds, including P. polycephalum. Thus, the primary objectives of this research were first to chemically characterize the exopolysaccharides (EPS) and intracellular polysaccharides (IPS) of P. polycephalum microplasmodia and then to evaluate their cytotoxicity against several cancer cell lines. RESULTS The yields of the crude EPS (4.43 ± 0.44 g/l) and partially purified (deproteinated) EPS (2.95 ± 0.85 g/l) were comparable (p > 0.05) with the respective crude IPS (3.46 ± 0.36 g/l) and partially purified IPS (2.45 ± 0.36 g/l). The average molecular weight of the EPS and IPS were 14,762 kDa and 1788 kDa. The major monomer of the EPS was galactose (80.22%), while that of the IPS was glucose (84.46%). Both crude and purified IPS samples showed significantly higher cytotoxicity toward Hela cells, especially the purified sample and none of the IPSs inhibited normal cells. Only 38.42 ± 2.84% Hela cells remained viable when treated with the partially purified IPS (1 mg/ml). However, although only 34.76 ± 6.58% MCF-7 cells were viable when exposed to the crude IPS, but the partially purified IPS displayed non-toxicity to MCF-7 cells. This suggested that the cytotoxicity toward MCF-7 would come from some component associated with the crude IPS sample (e.g. proteins, peptides or ion metals) and the purification process would have either completely removed or reduced amount of that component. Cell cycle analysis by flow cytometry suggested that the mechanism of the toxicity of the crude IPS toward MCF-7 and the partially purified IPS toward Hela cells was due to apoptosis. CONCLUSIONS The EPS and IPS of P. polycephalum microplasmodia had different chemical properties including carbohydrate, protein and total sulfate group contents, monosaccharide composition and molecular weights, which led to different cytotoxicity activities. The crude and partially purified IPSs would be potential materials for further study relating to cancer treatment.
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Affiliation(s)
- Tuyen T H Do
- School of Biotechnology, International University, Ho Chi Minh City, Vietnam
- Vietnam National University, Ho Chi Minh City, Vietnam
- Faculty of Biotechnology, Ho Chi Minh City University of Food Industry, Ho Chi Minh City, Vietnam
| | - Tran N B Lai
- School of Biotechnology, International University, Ho Chi Minh City, Vietnam
- Vietnam National University, Ho Chi Minh City, Vietnam
| | - Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR, USA
| | - Hanh T M Tran
- School of Biotechnology, International University, Ho Chi Minh City, Vietnam.
- Vietnam National University, Ho Chi Minh City, Vietnam.
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Ameen F, Stephenson SL, AlNadhari S, Yassin MA. Isolation, identification and bioactivity analysis of an endophytic fungus isolated from Aloe vera collected from Asir desert, Saudi Arabia. Bioprocess Biosyst Eng 2021; 44:1063-1070. [PMID: 33495932 DOI: 10.1007/s00449-020-02507-1] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2020] [Accepted: 12/29/2020] [Indexed: 11/28/2022]
Abstract
Endophytic fungi isolated from desert plants are among the less known organisms with potentially valuable applications. The bioactivities of an endophytic fungus isolated from Aloe vera, a plant found in central regions of Asir desert, Saudi Arabia. Based on primary phytochemical screening, an efficient isolate was selected and identified according to the sequence analysis of the internal spacer regions ITS1, ITS4 and the 5.8S region as Preussia africana belonging to the family Sporormiaceae. The crude extract of this fungus was evaluated for its bioactivities. Under static conditions, the crude extract at a concentration of 500 μg/mL had a strong 2,2-diphenyl-1-picrylhydrazyl (DPPH) scavenging rate of 87%, whereas a higher concentration (100 μg/mL) had an astounding wound healing effect (42.6% at 48 h) when compared to positive control. Moreover, the crude extract with a concentration of 50 μg/mL was active against almost all cancer cell lines such as HeLa (cervical cancer), Hep G2 (liver cancer), MCF-7 (breast cancer), A549 (lung cancer), LN-229 (glioblastoma), A-431 (skin cancer), and kidney cell line (HEK 293T). The results suggest that the endophytic fungus P. africana from A. vera has wide therapeutic applications against severe disease conditions.
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Affiliation(s)
- Fuad Ameen
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.
| | - Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR, 72701, USA
| | - Saleh AlNadhari
- Department of Plant Protection, College of Agriculture, King Saud University, Riyadh, Saudi Arabia
| | - Mohamed A Yassin
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.,Agricultural Research Center, Plant Pathology Research Institute, Giza, Egypt
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Perrigo AL, Vadell EM, Cavender JC, Landolt JC, Liu P, Stephenson SL. Additional new species suggest high dictyostelid diversity on Madagascar. Mycologia 2020; 112:1026-1042. [PMID: 33006910 DOI: 10.1080/00275514.2020.1802641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
Dictyostelids are a monophyletic group of sorocarp-forming social amoebae in the major eukaryotic division Amoebozoa. Members of this taxon, which is made up of almost 200 described species, are common in terrestrial soils globally. Still, the alpha diversity is not well known in many areas, and new species are frequently recovered. The highest species richness is found in the tropics. Here, five new species are described from soil samples collected in Madagascar. These species-Cavenderia basinodulosa, C. canoespora, Heterostelium radiatum, H. versatile, and Raperostelium stabile-are described based on both morphological characteristics and molecular data, with sequence data from the rDNA small subunit (SSU). The five new species are morphologically disparate, ranging from relatively small, robust taxa such as R. stabile to taxa with variable morphologies such as the larger H. radiatum and H. versatile and the yellow-tinted and irregularly branched species C. canoespora and C. basinulosa. These new species, together with earlier work where 13 other species were described from the island, suggest that there is a range of genetically diverse and highly morphologically variable dictyostelid taxa occurring on Madagascar, suggesting biogeographic patterns even within these very small organisms.
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Affiliation(s)
- Allison L Perrigo
- Department of Biological and Environmental Sciences, University of Gothenburg , Gothenburg, Sweden.,Gothenburg Global Biodiversity Centre , Gothenburg, Sweden
| | - Eduardo M Vadell
- Escuela de Farmacia and Bioquímica, J. F. Kennedy University Sarmiento 4564 / Museo de Historia Nat. R.S.V. Viamonte 1716 , Buenos Aires, Argentina
| | - James C Cavender
- Department of Environmental and Plant Biology, Ohio University , Athens, Ohio 45701
| | - John C Landolt
- Department of Biology, Shepherd University , Shepherdstown, West Virginia 25443
| | - Pu Liu
- Engineering Research Center of Edible and Medicinal Fungi, Ministry of Education, Jilin Agricultural University , Changchun 130118, Jilin Province, People's Republic of China
| | - Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville , Arkansas 72701
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Elliott TF, Nelsen DJ, Karunarathna SC, Stephenson SL. Entoloma sequestratum, a new species from northern Thailand, and a worldwide key to sequestrate taxa of Entoloma ( Entolomataceae). Fungal Syst Evol 2020; 6:253-263. [PMID: 32904160 PMCID: PMC7451772 DOI: 10.3114/fuse.2020.06.12] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Abstract
Based on our study of the morphology and genetics of sporocarps collected in the mountains of northern Thailand, we herein describe Entoloma sequestratum as a new sequestrate member of the Entolomotaceae. This serves as the first report of a sequestrate member of the genus from Thailand. In addition, we provide a worldwide key to all of the described sequestrate members of the genus.
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Affiliation(s)
- T F Elliott
- Ecosystem Management, School of Environmental and Rural Science, University of New England, Armidale, NSW 2351, Australia
| | - D J Nelsen
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, USA
| | - S C Karunarathna
- Key Laboratory of Economic Plants and Biotechnology, Kunming Institute of Botany, Chinese Academy of Sciences, 132 Lanhei Road, Kunming 650201, China.,World Agroforestry Centre, East and Central Asia, 132 Lanhei Road, Kunming 650201, China
| | - S L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, USA
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Abstract
A survey of myxomycete diversity on five islands of the Seychelles yielded 105 species and 10 infra-specific taxa, which included 89 species on La Digue, 66 on Praslin, 63 on Mahé, 31 on Curieuse and 4 on Félicité. Among these records, 64 species are new for the Seychelles and together with data from the literature, 143 species of myxomycetes are now known for all of the Seychelles. Most collecting on all five islands was carried out in low elevation areas. Forty-four species (73% of all specimens of myxomycetes) were found in low-elevation localities, and among these were Arcyria helvetica, Dictydiaethalium dictyosporum, Echinostelium paucifilum, Physarum aeneum, Ph. echinosporum, Reticularia olivacea, and Stemonaria longa. From 54 species of plants used by myxomycetes as substrates, eight species provided 63% of the specimens of myxomycetes, with most samples recorded from Calophyllum inophyllum. On the basis of substrate type, myxomycetes were distributed as follows: 37% of specimens were collected on dead wood and decaying palm stems, 16% on the bark and stems of living plants, 25% on ground litter, and 22% on aerial litter. A comparison of the assemblages of myxomycetes found in zones with different levels of human impact indicated that 84 species were found in forests, 74 in anthropogenic areas, and 62 in recreational coastal areas. The Seychelles provide a good background for a high level of myxomycete diversity, as a consequence of favorable climatic conditions and their location between Asia and Africa.
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Affiliation(s)
- Tetiana Kryvomaz
- Kyiv National Construction and Architecture University, 31, Povitroflotskyi prospect, UA-03680, Kiev, Ukraine.
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Stephenson SL, Kaur G, Payal N, Elliott TF, Vernes K. Myxomycetes associated with arid habitats in northeastern South Australia. T ROY SOC SOUTH AUST 2020. [DOI: 10.1080/03721426.2020.1779429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Steven L. Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR, USA
| | - Gurpreet Kaur
- Department of Biotechnology, Shoolini University of Biotechnology and Management Sciences, Solan, India
| | - Nazrana Payal
- Department of Biotechnology, Shoolini University of Biotechnology and Management Sciences, Solan, India
| | - Todd F. Elliott
- Ecosystem Management, University of New England, Armidale, Australia
| | - Karl Vernes
- Ecosystem Management, University of New England, Armidale, Australia
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White MA, Elliott TF, Kennedy BPA, Stephenson SL. First records of myxomycetes from Bathurst Island (one of the Tiwi Islands) in the Northern Territory, Australia. AUSTRAL ECOL 2020. [DOI: 10.1111/aec.12937] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- Mary A. White
- Department of Biological Sciences; University of Arkansas; Fayetteville Arkansas USA
| | - Todd F. Elliott
- Ecosystem Management; University of New England; Armidale New South Wales 2351 Australia
| | - Brooke P. A. Kennedy
- Ecosystem Management; University of New England; Armidale New South Wales 2351 Australia
| | - Steven L. Stephenson
- Department of Biological Sciences; University of Arkansas; Fayetteville Arkansas USA
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Abstract
A total of 68 315 digitised records of myxomycetes from the eastern United States were compiled from all readily available sources. After cleaning the database for inconsistencies, 58 594 records remained that were suitable for analysis. A total of 460 different species of myxomycetes were recorded, out of which 410 were classified as rare. Five species were represented by more than 1 500 records and 44 species were represented by only a single record. The states of New York, Virginia and West Virginia have the highest number of records. Almost half of the recognised morphospecies of myxomycetes in the world occur in the eastern United States. A small number of species thrive in different ecological conditions, whereas most species require more specific ecological settings for the formation of fruiting bodies. States associated with high biodiversity have been subjected to more intensive sampling efforts, and southern states seem to have been less studied than northern ones. The project described herein apparently represents one of the few efforts to characterise the myxobiota of a relatively large region of the world.
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Affiliation(s)
- Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR, USA
| | | | - Carlos Rojas
- Engineering Research Institute and Department of Biosystems Engineering, University of Costa Rica, San Pedro de Montes de Oca, Costa Rica
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Leontyev DV, Schnittler M, Stephenson SL, Novozhilov YK. Systematic revision of the Tubifera casparyi-T. dictyoderma complex: Resurrection of the genus Siphoptychium and introduction of the new genus Thecotubifera. Mycologia 2019; 111:981-997. [PMID: 31613722 DOI: 10.1080/00275514.2019.1660842] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
The genus Siphoptychium is resurrected on the basis of comparative morphology and phylogeny of partial nuc 18S rDNA (18S) and translation elongation factor 1-alpha (EF1A) nucleotide sequences. The genus is characterized by the firm upper surface of the pseudoaethalium, accreted but easily separable sporothecae, a tubular or fibrous columella, and spores with a reticulate ornamentation consisting of 7-9 meshes across the diameter. In addition to the currently known single species S. casparyi (= Tubifera casparyi), two new members of Siphoptychium are described: S. violaceum from coniferous forests of Europe, east Asia, and southeast Asia, and S. reticulatum from temperate and subarctic regions of North America and alpine regions of Europe. A second genus, Thecotubifera, is described to accommodate Tubifera dictyoderma. The fruiting body of this species is transitional between a pseudoaethalium and a true aethalium. It is covered by a contiguous membranous cortex formed by the fused tips of the sporothecae, a feature typical for aethalia. However, the inner portions of sporothecae remain discernible, a feature more typical for pseudoaethalia. Columellae of Th. dictyoderma are formed by perforated plates, and the spores have a reticulate ornamentation consisting of 2-5 meshes across the diameter. For Th. dictyoderma, we could confirm records only for tropical regions and Japan, whereas all studied European specimens, including those mentioned in current monographs, represent species of Siphoptychium.
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Affiliation(s)
- Dmitry V Leontyev
- Department of Botany, H.S. Skovoroda Kharkiv National Pedagogical University, Valentynivs'ka 2, Kharkiv 61168, Ukraine
| | - Martin Schnittler
- Institute of Botany and Landscape Ecology, Ernst Moritz Arndt University Greifswald, Soldmannstr. 15, Greifswald, Germany D-17487
| | - Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas 72701
| | - Yuri K Novozhilov
- V.L. Komarov Botanical Institute of the Russian Academy of Sciences, Prof. Popov St. 2, 197376 St. Petersburg, Russia
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Truong KA, Stephenson SL, Phung TV, Tran HTM. Effects of medium composition on the growth and lipid production of microplasmodia of Physarum polycephalum. Biotechnol Prog 2019; 35:e2873. [PMID: 31215765 DOI: 10.1002/btpr.2873] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2019] [Revised: 06/08/2019] [Accepted: 06/14/2019] [Indexed: 01/09/2023]
Abstract
Physarum polycephalum is a plasmodial slime mold. One of the trophic stages in the life cycle of this organism is a plasmodium. In submerged culture, plasmodia are fragmented into microplasmodia. The latter both lack cell walls and are capable of rapid growth. There has been limited information on the effects of medium composition on the growth and lipid accumulation of microplasmodia. In this study, optimization of medium components by response surface methodology showed that tryptone and yeast extract concentrations had the most significant effects on lipid and biomass production; significant synergistic interactions between glucose and tryptone concentration on these responses were also recorded. The optimal medium was composed of 20 g/L of glucose, 6.59 g/L of tryptone, and 3.0 g/L of yeast extract. This medium yielded 13.86 g/L of dry biomass and 1.97 g/L of lipids. These amounts are threefold higher than those of the American Type Culture Collection (ATCC) medium. In addition, biomass and lipid production reached maximal values between only 4 and 5 days. Fatty acid compositions analysis by gas chromatography-mass spectrometer (GC-MS) revealed that P. polycephalum lipids consisted mainly of oleic acid (40.5%), linoleic acid (10%), and octadecynoic (15.8%). This is the first report on the fatty acid composition of P. polycephalum microplasmodia. These results suggest that the biomass of microplasmodia could be used as a source of material for direct conversion into biodiesel because of the absence of cell walls or it could also be used as a supplemental source of beneficial fatty acids for humans, albeit with some further evaluation needed.
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Affiliation(s)
- Kiet A Truong
- School of Biotechnology, International University, Ho Chi Minh City, Vietnam
| | - Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas
| | - Trung V Phung
- Center for Research and Technology Transfer, Vietnam Academy of Science and Technology, Hanoi, Vietnam
| | - Hanh T M Tran
- School of Biotechnology, International University, Ho Chi Minh City, Vietnam
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Affiliation(s)
- Nazira ElHage
- School of Biological Sciences, University of Kentucky, Lexington, Kentucky 40506
| | - Christopher Little
- School of Biological Sciences, University of Kentucky, Lexington, Kentucky 40506
| | - Jim D. Clark
- School of Biological Sciences, University of Kentucky, Lexington, Kentucky 40506
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Affiliation(s)
- Donna L. Moore
- Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas 72701
| | | | - Gary A. Laursen
- Institute of Arctic Biology, University of Alaska, Fairbanks, Alaska 99775
| | - Wayne A. Woodgate
- Institute of Arctic Biology, University of Alaska, Fairbanks, Alaska 99775
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Affiliation(s)
- Martin Schnittler
- Department of Biology, Fairmont State College, Fairmont, West Virginia 26554-2470
| | - Steven L. Stephenson
- Department of Biology, Fairmont State College, Fairmont, West Virginia 26554-2470
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Liu P, Hou J, Zou Y, Stephenson SL, Huo X, Hu X, Li Y. Developmental features and associated symbiont bacterial diversity in essential life cycle stages of Heterostelium colligatum. Eur J Protistol 2019; 68:99-107. [DOI: 10.1016/j.ejop.2019.02.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2018] [Revised: 01/31/2019] [Accepted: 02/05/2019] [Indexed: 11/30/2022]
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Walker LM, Cedeño-Sanchez M, Carbonero F, Herre EA, Turner BL, Wright SJ, Stephenson SL. The Response of Litter-Associated Myxomycetes to Long-Term Nutrient Addition in a Lowland Tropical Forest. J Eukaryot Microbiol 2019; 66:757-770. [PMID: 30793409 DOI: 10.1111/jeu.12724] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Revised: 01/31/2019] [Accepted: 02/11/2019] [Indexed: 12/17/2022]
Abstract
Myxomycetes (plasmodial slime molds) are abundant protist predators that feed on bacteria and other microorganisms, thereby playing important roles in terrestrial nutrient cycling. Despite their significance, little is known about myxomycete communities and the extent to which they are affected by nutrient availability. We studied the influence of long-term addition of N, P, and K on the myxomycete community in a lowland forest in the Republic of Panama. In a previous study, microbial biomass increased with P but not N or K addition at this site. We hypothesized that myxomycetes would increase in abundance in response to P but that they would not respond to the sole addition of N or K. Moist chamber cultures of leaf litter and small woody debris were used to quantify myxomycete abundance. We generated the largest myxomycete dataset (3,381 records) for any single locality in the tropics comprised by 91 morphospecies. In line with our hypothesis, myxomycete abundance increased in response to P addition but did not respond to N or K. Community composition was unaffected by nutrient treatments. This work represents one of very few large-scale and long-term field studies to include a heterotrophic protist highlighting the feasibility and value in doing so.
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Affiliation(s)
- Laura M Walker
- Department of Biology, Washington University, One Brookings Drive, St. Louis, Missouri, 63130, USA
| | - Marjorie Cedeño-Sanchez
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Ancon, Balboa, Republic of Panama
| | - Franck Carbonero
- Department of Food Science, University of Arkansas, Fayetteville, Arkansas, 72704, USA
| | - Edward Allen Herre
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Ancon, Balboa, Republic of Panama
| | - Benjamin L Turner
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Ancon, Balboa, Republic of Panama
| | - S Joseph Wright
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Ancon, Balboa, Republic of Panama
| | - Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas, 72701, USA
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Liu P, Zou Y, Hou J, Stephenson SL, Li Y. Dictyostelium purpureum var. pseudosessile, a new variant of dictyostelid from tropical China. BMC Evol Biol 2019; 19:78. [PMID: 30871462 PMCID: PMC6419474 DOI: 10.1186/s12862-019-1407-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2018] [Accepted: 03/04/2019] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Dictyostelid cellular slime molds (dictyostelids) are microscopic throughout their entire life cycle. The vegetative phase consists of single-celled amoeboid forms which live in the soil/leaf litter microhabitat of fields and forests along with animal dung, where they feed upon bacteria and other microbes, grow, and multiply until the available food supply is exhausted. When this happens, the amoeboid forms aggregate together in large numbers to form multi-celled pseudoplasmodia, which then give rise to fruiting bodies (sorocarps) that consist of supportive stalks and unwalled sori containing propagative spores. RESULTS Dictyostelium purpureum var. pseudosessile, a new variant of dictyostelid, is described herein, based on morphological features and molecular data. This new variant was isolated from soil samples collected in two tropical areas of China. The complete spore-to-spore life cycle of this species, which required 50 h, including spore germination, myxamoebae, cell aggregation, pseudoplasmodium, and sorocarp formation, was documented. Descriptions and illustrations are provided for this species based on our collections. Data from ontogeny, morphology and phylogeny analyses (SSU) of D. purpureum var. pseudosessile confirm that it is a Group 4 species according to the newly proposed classification of dictyostelids. CONCLUSIONS Our results suggest that the violet sori, widens at the midpoint of sorophore and simple recurved sorophore bases represent the prominent features for the new variant D. purpureum var. pseudosessile. The latter is a Group 4 species now known from two tropical areas of China where dictyostelids remains understudied.
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Affiliation(s)
- Pu Liu
- Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, 130118, People's Republic of China
| | - Yue Zou
- Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, 130118, People's Republic of China
| | - Jiangan Hou
- Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, 130118, People's Republic of China
| | - Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR, 72701, USA
| | - Yu Li
- Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, 130118, People's Republic of China.
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Liu P, Zou Y, Li S, Stephenson SL, Wang Q, Li Y. Two new species of dictyostelid cellular slime molds in high-elevation habitats on the Qinghai-Tibet Plateau, China. Sci Rep 2019; 9:5. [PMID: 30626889 PMCID: PMC6327048 DOI: 10.1038/s41598-018-37896-7] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2018] [Accepted: 12/18/2018] [Indexed: 11/09/2022] Open
Abstract
Dictyostelid cellular slime molds (dictyostelids) are key components of soil microbes. The Qinghai-Tibet Plateau is characterized by unique and important forest types because of the considerable range in elevation which exists. During the period of 2012, 2013 and 2016, 12 species of dictyostelids were yielded from samples collected in this region, including two new species and three new records for China. Six other species were new records for this region. Ontogeny, morphology, ultrastructure and systematic molecular analyses (SSU & ITS) of D. minimum and D. multiforme confirm that they are Goup 4 new species. The ornamentation of the surface of dictyostelids' spores is the first time to be observed until now. In the SSU phylogenetic tree generated in the present study, Synstelium, not assigned to order and family before, was assigned to the clade Acytosteliaceae in the Acytosteliales firstly. To our knowledge, the study reported herein is the first investigation of dictyostelid biodiversity carried out at elevations above 2000 m. Sorocarp size, sorus size, spore length, ratio of sorus and sorophore, and ratio of sorus and spore size were positively correlated with increasing elevation and no linear correlated with forest type, according to the results of linear regression analysis.
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Affiliation(s)
- Pu Liu
- Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, 130118, P. R. China
| | - Yue Zou
- Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, 130118, P. R. China
| | - Shu Li
- Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, 130118, P. R. China
| | - Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR, 72701, USA
| | - Qi Wang
- Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, 130118, P. R. China.
| | - Yu Li
- Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, 130118, P. R. China.
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Vadell E, Cavender JC, Landolt JC, Perrigo AL, Liu P, Stephenson SL. Five new species of dictyostelid social amoebae (Amoebozoa) from Thailand. BMC Evol Biol 2018; 18:198. [PMID: 30577752 PMCID: PMC6303869 DOI: 10.1186/s12862-018-1328-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2018] [Accepted: 12/13/2018] [Indexed: 11/23/2022] Open
Abstract
BACKGROUND Dictyostelid cellular slime molds (dictyostelids) are common inhabitants of the soil and leaf litter layer of fields and forests, along with animal dung, where they feed mostly on bacteria. However, reports on the species diversity of dictyostelids in South Asia, particularly Thailand, are limited. The research reported in this paper was carried out to increase our knowledge of the species diversity of this group of organisms in northern Thailand. RESULTS Forty soil samples were collected at four localities in northern Thailand to assess the species richness of dictyostelids. These samples yielded five dictyostelid isolates that were not morphologically consistent with any described species. Based on molecular signatures, all five of these isolates were assigned to the family Cavenderiaceae, genus Cavenderia. All five share a number of morphological similarities with other known species from this family. The new taxa differ from previously described species primarily in the size and complexity of their fruiting bodies (sorocarps). This paper describes these new species (Cavenderia aureostabilis, C. bhumiboliana, C. protodigitata, C. pseudoaureostipes, and C. subdiscoidea) based on a combination of morphological characteristics and their phylogenetic positions. CONCLUSIONS At least 15 taxa of dictyostelids were obtained from the four localities in northern Thailand, which indicates the high level of species diversity in this region. Five species were found to be new to science. These belong to the family Cavenderiaceae, genus Cavenderia, and were described based on both morphology and phylogeny.
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Affiliation(s)
- Eduardo Vadell
- Escuela de Bioquimica, Departamento de Biologia, J. F. Kennedy University, Buenos Aires, Argentina
| | - James C. Cavender
- Departmental of Environmental and Plant Biology, Ohio University, Athens, OH 45701 USA
| | - John C. Landolt
- Department of Biology, Shepherd University, Shepherdstown, West Virginia 25443 USA
| | - Allison L. Perrigo
- Gothenburg Global Biodiversity Centre, Gothenburg, Sweden
- Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
| | - Pu Liu
- Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, 130118 China
| | - Steven L. Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701 USA
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Garrett Kluthe B, Guiccioni M, Stephenson SL. Using Lichenometry, Dendrochronology, and Historical Data to Establish the Relative Age of an Abandoned Cemetery in Northern Arkansas. EBL 2018. [DOI: 10.14237/ebl.9.2.2018.1296] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022] Open
Abstract
Folklore surrounding an abandoned cemetery located in Johnson County, Arkansas (a part of the Louisiana Purchase) suggested that it was used by early settlers. Historical records were combined with several dating techniques to determine the approximate time periods that Cedar Grove Cemetery was established and abandoned. Cores extracted from trees located adjacent to or on graves provided evidence that the cemetery was abandoned in the 1920s. These results coincide with the last burial event in 1922. The approximate age of undated gravesites was determined using lichenometry. A lichen growth rate of 0.0685 cm/year was determined for lichens present on two gravestones with known dates. This growth rate was then applied to the undated graves to establish their approximate ages. Death dates from historical records of individuals buried in the cemetery matched the dates established by the lichen growth rate. Our results show that many of the unmarked graves date prior to the first documented private ownership of the land. The results of this study support local folklore passed down over several generations about the origin of the cemetery.
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Affiliation(s)
- John C. Landolt
- Division of Science and Mathematics, Shepherd College, Shepherdstown, West Virginia 25443
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Stephenson SL. Distribution and Ecology of Myxomycetes in Temperate Forests. II. Patterns of Occurrence on Bark Surface of Living Trees, Leaf Litter, and Dung. Mycologia 2018. [DOI: 10.1080/00275514.1989.12025792] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Affiliation(s)
- John C. Landolt
- Division of Science and Mathematics, Shepherd College, Shepherdstown, West Virginia 25443
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Affiliation(s)
- Jim Clark
- Morgan School of Biological Sciences, University of Kentucky, Lexington, Kentucky 40506-0225
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Affiliation(s)
- Jim Clark
- T.H. Morgan School of Biological Sciences, University of Kentucky, Lexington, Kentucky 40506
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Affiliation(s)
| | - Donna L. Moore
- Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas 72701
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Sheikh S, Thulin M, Cavender JC, Escalante R, Kawakami SI, Lado C, Landolt JC, Nanjundiah V, Queller DC, Strassmann JE, Spiegel FW, Stephenson SL, Vadell EM, Baldauf SL. A New Classification of the Dictyostelids. Protist 2017; 169:1-28. [PMID: 29367151 DOI: 10.1016/j.protis.2017.11.001] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2017] [Revised: 11/08/2017] [Accepted: 11/09/2017] [Indexed: 01/09/2023]
Abstract
Traditional morphology-based taxonomy of dictyostelids is rejected by molecular phylogeny. A new classification is presented based on monophyletic entities with consistent and strong molecular phylogenetic support and that are, as far as possible, morphologically recognizable. All newly named clades are diagnosed with small subunit ribosomal RNA (18S rRNA) sequence signatures plus morphological synapomorphies where possible. The two major molecular clades are given the rank of order, as Acytosteliales ord. nov. and Dictyosteliales. The two major clades within each of these orders are recognized and given the rank of family as, respectively, Acytosteliaceae and Cavenderiaceae fam. nov. in Acytosteliales, and Dictyosteliaceae and Raperosteliaceae fam. nov. in Dictyosteliales. Twelve genera are recognized: Cavenderia gen. nov. in Cavenderiaceae, Acytostelium, Rostrostelium gen. nov. and Heterostelium gen. nov. in Acytosteliaceae, Tieghemostelium gen. nov., Hagiwaraea gen. nov., Raperostelium gen. nov. and Speleostelium gen. nov. in Raperosteliaceae, and Dictyostelium and Polysphondylium in Dictyosteliaceae. The "polycephalum" complex is treated as Coremiostelium gen. nov. (not assigned to family) and the "polycarpum" complex as Synstelium gen. nov. (not assigned to order and family). Coenonia, which may not be a dictyostelid, is treated as a genus incertae sedis. Eighty-eight new combinations are made at species and variety level, and Dictyostelium ammophilum is validated.
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Affiliation(s)
- Sanea Sheikh
- Programme in Systematic Biology, Uppsala University, Norbyvägen 18D, Uppsala SE-75236, Sweden
| | - Mats Thulin
- Programme in Systematic Biology, Uppsala University, Norbyvägen 18D, Uppsala SE-75236, Sweden
| | - James C Cavender
- Departmental of Environmental and Plant Biology, Ohio University, Athens, OH 45701, USA
| | - Ricardo Escalante
- IIB, Instituto de Investigaciones Biomédicas "Alberto Sols", CSIC-UAM, Arturo Duperier 4, 28029 Madrid, Spain
| | - Shin-Ichi Kawakami
- Yamagata Prefectural Museum, 1-8 Kajo-machi, Yamagata-shi, Yamagata-ken 990-0826, Japan
| | - Carlos Lado
- Real Jardín Botánico, CSIC, Plaza de Murillo 2, 28014 Madrid, Spain
| | - John C Landolt
- Department of Biology, Shepherd University, Shepherdstown, WV 25443, USA
| | - Vidyanand Nanjundiah
- Centre for Human Genetics, BioTech Park, Electronic City (Phase I), Bangalore 560100, India
| | - David C Queller
- Department of Biology, Washington University in Saint Louis, Campus Box 1137, One Brookings Drive, Saint Louis, MO, USA
| | - Joan E Strassmann
- Department of Biology, Washington University in Saint Louis, Campus Box 1137, One Brookings Drive, Saint Louis, MO, USA
| | - Frederick W Spiegel
- Department of Biological Sciences, SCEN 601, 850 W. Dickson 1, University of Arkansas, Fayetteville, AR 72701, USA
| | - Steven L Stephenson
- Department of Biological Sciences, SCEN 601, 850 W. Dickson 1, University of Arkansas, Fayetteville, AR 72701, USA
| | - Eduardo M Vadell
- Escuela de Farmacia y Bioquímica, J.F. Kennedy University, Buenos Aires, Argentina
| | - Sandra L Baldauf
- Programme in Systematic Biology, Uppsala University, Norbyvägen 18D, Uppsala SE-75236, Sweden.
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Huynh TTM, Phung TV, Stephenson SL, Tran HTM. Biological activities and chemical compositions of slime tracks and crude exopolysaccharides isolated from plasmodia of Physarum polycephalum and Physarella oblonga. BMC Biotechnol 2017; 17:76. [PMID: 29121887 PMCID: PMC5679387 DOI: 10.1186/s12896-017-0398-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2017] [Accepted: 10/31/2017] [Indexed: 01/08/2023] Open
Abstract
BACKGROUND The myxomycetes derive their common name (slime molds) from the multinucleate trophic stage (plasmodium) in the life cycle, which typically produces a noticeable amount of slimy materials, some of which is normally left behind as a "slime track" as the plasmodium migrates over the surface of a particular substrate. The study reported herein apparently represents the first attempt to investigate the chemical composition and biological activities of slime tracks and the exopolysaccharides (EPS) which cover the surface of the plasmodia of Physarum polycephalum and Physarella oblonga. RESULTS Chemical analyses indicated that the slime tracks and samples of the EPS consist largely of carbohydrates, proteins and various sulphate groups. Galactose, glucose and rhamnose are the monomers of the cabohydrates present. The slime tracks of both species and the EPS of Phy. oblonga contained rhamnose, but the EPS of Ph. polycephalum had glucose as the major monomer. In term of biological activities, the slime tracks displayed no antimicrobial activity, low anticancer activity and only moderate antioxidant activity. However, EPSs from both species showed remarkable antimicrobial activities, especially toward Candida albicans (zone of inhibition ≥20 mm). Minimum inhibitory concentrations of this fungus were found to be 2560 μg/mL and 1280 μg/mL for EPS from Phy. oblonga and Ph. polycephalum, respectively. These EPS samples also showed moderate antioxidant activities. However, they both displayed cytotoxicity towards MCF-7 and HepG2 cancer cells. Notably, EPS isolated from the plasmodium of Phy. oblonga inhibited the cell growth of MCF-7 and HepG2 at the half inhibitory concentration (IC50) of 1.22 and 1.11 mg/mL, respectively. CONCLUSIONS EPS from Ph. polycephalum plasmodium could be a potential source of antifungal compounds, and EPS from Phy. oblonga could be a potential source of anticancer compounds.
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Affiliation(s)
- Tuyen T M Huynh
- School of Biotechnology, International University, VNU-HCM, Block 6, LinhTrung Ward, Thu Duc District, Ho Chi Minh City, 70000, Vietnam
| | - Trung V Phung
- Institute of Chemical Technology, Vietnam Academy of Science and Technology, 01-Mac Dinh Chi Street, District 1, Ho Chi Minh City, 70000, Vietnam
| | - Steven L Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR, 72701, USA
| | - Hanh T M Tran
- School of Biotechnology, International University, VNU-HCM, Block 6, LinhTrung Ward, Thu Duc District, Ho Chi Minh City, 70000, Vietnam.
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Clark JD, Snell S, Landolt JC, Stephenson SL. The effects of dictyostelids on the formation and maturation of myxomycete plasmodia. Mycologia 2017. [DOI: 10.1080/15572536.2003.11833151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
| | - Sarah Snell
- Department of Biology, University of Kentucky, Lexington, Kentucky 40506
| | - John C. Landolt
- Department of Biology, Shepherd College, Shepherdstown, West Virginia 25443
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Affiliation(s)
| | - Steven L. Stephenson
- Department of Biology, Fairmont State College, Fairmont, West Virginia 26554-2470
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Affiliation(s)
- Steven L. Stephenson
- Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas 72701
| | - Martin Schnittler
- Botanical Institute and Botanical Garden, Ernst-Moritz-Arndt University Greifswald, Grimmer Strasse 88, D-17487 Greifswald, Germany
| | - Carlos Lado
- Real Jardín Botánico, CSIC, Plaza de Murillo, 2-28014 Madrid, Spain
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Affiliation(s)
- Jim Clark
- Department of Biology, University of Kentucky, Lexington, Kentucky 40506
| | - Edward F. Haskins
- Department of Biology, Box 351330, University of Washington, Seattle, Washington 98195-1330
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