A novel method to estimate the response of habitat types to nitrogen deposition

Increasing nitrogen depositions adversely affect European landscapes, including habitats within the Natura2000 network. Critical loads for nitrogen deposition have been established to quantify the loss of habitat quality. When the nitrogen deposition rises above a habitat-specific critical load, the quality of the focal habitat is expected to be negatively influenced. Here, we investigate how the quality of habitat types is affected beyond the critical load. We calculated response curves for 60 terrestrial habitat types in the Netherlands to the estimated nitrogen deposition (EMEP-data). The curves for habitat types are based on the occurrence of their characteristic plant species in North-Western Europe (plot data from the European Vegetation Archive). The estimated response curves were corrected for soil type, mean annual temperature and annual precipitation. Evaluation was carried out by expert judgement, and by comparison with gradient deposition field studies. For 39 habitats the response to nitrogen deposition was judged to be reliable by five experts, while out of the 41 habitat types for which field studies were available, 25 showed a good agreement. Some of the curves showed a steep decline in quality and some a more gradual decline with increasing nitrogen deposition. We compared the response curves with both the empirical and modelled critical loads. For 41 curves, we found a decline already starting below the critical load.

Genome size evolution of the extant lycophytes and ferns

Ferns and lycophytes have remarkably large genomes. However, little is known about how their genome size evolved in fern lineages. To explore the origins and evolution of chromosome numbers and genome size in ferns, we used flow cytometry to measure the genomes of 240 species (255 samples) of extant ferns and lycophytes comprising 27 families and 72 genera, of which 228 species (242 samples) represent new reports. We analyzed correlations among genome size, spore size, chromosomal features, phylogeny, and habitat type preference within a phylogenetic framework. We also applied ANOVA and multinomial logistic regression analysis to preference of habitat type and genome size. Using the phylogeny, we conducted ancestral character reconstruction for habitat types and tested whether genome size changes simultaneously with shifts in habitat preference. We found that 2C values had weak phylogenetic signal, whereas the base number of chromosomes (x) had a strong phylogenetic signal. Furthermore, our analyses revealed a positive correlation between genome size and chromosome traits, indicating that the base number of chromosomes (x), chromosome size, and polyploidization may be primary contributors to genome expansion in ferns and lycophytes. Genome sizes in different habitat types varied significantly and were significantly correlated with habitat types; specifically, multinomial logistic regression indicated that species with larger 2C values were more likely to be epiphytes. Terrestrial habitat is inferred to be ancestral for both extant ferns and lycophytes, whereas transitions to other habitat types occurred as the major clades emerged. Shifts in habitat types appear be followed by periods of genomic stability. Based on these results, we inferred that habitat type changes and multiple whole-genome duplications have contributed to the formation of large genomes of ferns and their allies during their evolutionary history.

The contribution of landscape features, climate and topography in shaping taxonomical and functional diversity of avian communities in a heterogeneous Alpine region

Understanding the effects of landscape composition and configuration, climate, and topography on bird diversity is necessary to identify distribution drivers, potential impacts of land use changes, and future conservation strategies. We surveyed bird communities in a study area located in the Central Alps (Autonomous Province of South Tyrol, northeast Italy), by means of point counts and investigated taxonomic and functional diversity at two spatial scales along gradients of land use/land cover (LULC) intensity and elevation. We also explored how environmental variables influence bird traits and red-list categories. Models combining drivers of different types were highly supported, pointing towards synergetic effects of different types of environmental variables on bird communities. The model containing only LULC compositional variables was the most supported one among the single-group models: LULC composition plays a crucial role in shaping local biodiversity and hence bird communities, even across broad landscape gradients. Particularly relevant were wetlands, open habitats, agricultural mosaics made up of small habitat patches and settlements, ecotonal and structural elements in agricultural settings, and continuous forests. To conserve bird diversity in the Alps, planning and management practices promoting and maintaining small fields, structural elements, and a mosaic of different LULC types should be supported, while preserving continuous forests at the same time. Additionally, pastures, extensively used meadows, and wetlands are key to conservation. These strategies might mitigate the impacts of global change on bird diversity in the Alps and in other European mountain areas.

Ectoparasite load of small mammals in the Serengeti Ecosystem: effects of land use, season, host species, age, sex and breeding status

Ectoparasite load in small mammals can be influenced by both environmental conditions and host species characteristics. However, the nature of these influences is poorly understood in many ecosystems. We used zero-inflated negative binomial (ZINB) regression models with a log link function to assess variation in ectoparasite load among 19 small mammal host species across different land uses (protection in a park, pastoralism and agriculture), habitat types, seasons, age classes, sexes and breeding statuses. We collected 4258 ectoparasites from 612 individual belonging to 19 different species of small mammals. The average ectoparasite load per individual was higher in the pastoral and agricultural lands than in the National Park. Ectoparasite load varied among species and was the highest for the four common and generalist small mammal species (Aethomys sp., Arvicanthis niloticus, Mastomys natalensis, and Gerbilliscus vicinus), most notably in the disturbed pastoral and agricultural lands. It was also higher in the dry than the wet season and for adult males than adult females. These patterns partly reflect the greater mobility of small mammals in the drier conditions; in addition the large body size and home range of males increase the likelihood of encountering parasites. Human disturbance was associated with elevated ectoparasitic load among the small mammals and hence elevated risk of transmission of ectoparasites to humans. As a result, understanding the effect of habitat disturbance on ectoparasite load and its link to zoonotic disease risk should be an important conservation goal and public health priority. Moreover, effective pest control strategies should consider variation in ectoparasite load with land use, habitat type, season and species characteristics.

Levels and profiles of perfluorinated alkyl acids in liver tissues of birds with different habitat types and trophic levels from an urbanized coastal region of South Korea

Contamination status and characteristics of perfluorinated alkyl acids (PFAAs) including perfluorinated carboxylic acids (PFCAs) and perfluorinated sulfonic acids (PFSAs) was examined using liver tissue of birds - black-tailed gulls (Larus crassirostris), domestic pigeons (Columba livia var. domestica), pacific loons (Gavia pacifica), herons (Ardea cinerea), and egrets (Egretta garzetta and Ardea alba) - with different trophic levels, habitat types and migratory behaviors from an industrialized coastal region of South Korea. A wide range of PFAAs (1.09 ng/g to 1060 ng/g; median = 52.6 ng/g) were detected in bird livers from the Korean coasts with high detection frequency. Accumulation features of PFAAs in birds indicated that primarily trophic position and secondly habitat type influence the levels and composition of PFAAs, e.g., relatively high PFAA levels and high composition of odd-numbered long carbon chain PFCAs (perfluoroundecanoic acid (PFUnDA) and perfluorotridecanoic acid (PFTriDA)) and PFOS in higher trophic and marine birds. The prevalence of long carbon chain (≥14) PFCAs likely implies a wide use of fluorotelomer-based substances in Korea. Interspecies comparison in the accumulation profile of persistent organic pollutants (including polychlorinated biphenyls (PCBs), organochlorine pesticides, polybrominated diphenylethers (PBDEs), and PFAAs) reveals relatively high load of PFAAs in inland (pigeons) and estuarine (egrets/herons) species compared to marine bird species, indicating wide use of PFAAs in the terrestrial environment.

The diversity and distribution of chigger mites associated with rodents in the South African savanna

Chigger mites (Trombiculidae) are temporary habitat-specific ectoparasites that often occur on rodents. Little ecological data are available on chiggers associated with rodents in South Africa. The study aims were to (1) record the chigger species associated with rodents in the savanna, (2) assess if chigger species display parasitope preference on the rodent body and (3) compare the distribution of chigger species in natural, agricultural and urban habitats. Rodents (n = 314) belonging to eight genera were trapped in the savanna biome during 2014 and 2015. Twelve chigger species, of which five are recently described species, were recorded from 161 rodent hosts. The data include three new country locality records. Microtrombicula mastomyia was the most prevalent species across sampling seasons and habitat types. Significant parasitope preference was recorded for two species, with the ear, face and tail base some of the preferred attachment sites. Sampling season and habitat type had a significant effect on chigger communities with summer and agricultural habitats recording the highest species richness, while the highest species diversity was recorded in natural habitats. The study contributes to our current knowledge regarding rodent-associated chigger diversity and distribution in South Africa and further highlights the importance of environmental characteristics in shaping chigger communities.

Data on recreational activities, respondents' values, land use preferences, protection level and biodiversity in nature-based tourism areas in Finland

We present the first dataset that can be used to associate peoples’ opinions with comprehensive biodiversity and cultural heritage values. The socio-ecological dataset includes 1) place-based information on peoples’ recreational activities, values expressed as pleasant and unpleasant sites, and negative preferences concerning land use in terms of tourism, nature protection and forestry, and 2) compiled information on scored biodiversity values and protection level of sites. The data are organized in 1ha grid cells. The data were compiled from a rural nature-based tourism area in two municipalities northern Finland. Peoples’ opinions were assessed using a public participation geographic information system (PPGIS) and the data were merged with spatial biodiversity data from the same area. The data are directly related to the article Tolvanen et al. [1]. Biodiversity data, also utilized in Tolvanen et al. 2020, were compiled from various sources and scoring was done in Kangas et al. [2]. References to individual respondents and spatial locations of markings were removed. The data are useful in evaluating the relationship between people's values and biodiversity.

Effect of different habitat types on abundance and biting times of Anopheles balabacensis Baisas (Diptera: Culicidae) in Kudat district of Sabah, Malaysia

BACKGROUND

We investigated the effect of five common habitat types on the diversity and abundance of Anopheles spp. and on the biting rate and time of Anopheles balabacensis (currently the only known vector for Plasmodium knowlesi in Sabah) at Paradason village, Kudat, Sabah. The habitats were forest edge, playground area, longhouse, oil palm plantation and shrub-bushes area. Sampling of Anopheles was done monthly using the human landing catch method in all habitat types for 14 months (October 2013 to December 2014, excluding June 2014). The Anopheles species were morphologically identified and subjected to PCR assay for the detection of Plasmodium parasites. Generalised linear mixed models (GLMM) were applied to test the variation in abundance and biting rates of An. balabacensis in different habitat types.

RESULTS

A total of 1599 Anopheles specimens were collected in the village, of which about 90% were An. balabacensis. Anopheles balabacensis was present throughout the year and was the dominant Anopheles species in all habitat types. The shrub bushes habitat had the highest Anopheles species diversity while forest edge had the greatest number of Anopheles individuals caught. GLMM analysis indicated that An. balabacensis abundance was not affected by the type of habitats, and it was more active during the early and late night compared to predawn and dawn. PCR assay showed that 1.61% of the tested An. balabacensis were positive for malaria parasites, most of which were caught in oil palm estates and infected with one to two Plasmodium species.

CONCLUSIONS

The identification of infected vectors in a range of habitats, including agricultural and farming areas, illustrates the potential for humans to be exposed to P. knowlesi outside forested areas. This finding contributes to a growing body of evidence implicating environmental changes due to deforestation, expansion of agricultural and farming areas, and development of human settlements near to forest fringes in the emergence of P. knowlesi in Sabah.

Phenotypic plasticity and local adaptations to dissolved oxygen in larvae fire salamander (Salamandra infraimmaculata)

A key environmental factor that varies both spatially and temporally in surface waters is dissolved oxygen (DO). In stagnant ephemeral freshwater ponds, DO can fluctuate diurnally and seasonally, while the constant mixing of water in streams typically maintain DO levels close to saturation with only minor fluctuations. Larvae of the Near Eastern fire salamander (Salamandra infraimmaculata) develop in a range of waterbodies that vary in flow and permanence. To study inter-population variation in larval response to environmental change, we translocated larvae between stream and pond habitats and exposed larvae sampled from different habitat types to hypoxic and normoxic conditions in the laboratory. Larvae transferred from stream to pond retain gill size, while larvae transferred from pond to stream show a reduction in gill size. Larvae that were caged within their native habitat, either stream or pond, display a decrease in gill size similar to larvae transferred from pond to stream. When exposed to experimentally manipulated levels of DO in the laboratory larvae, respectively, increase and decrease gill size under hypoxic and normoxic conditions. Habitat-type origin had a significant effect on the degree of change in gill size with larvae from permanent streams demonstrating the lowest absolute variation in gill size. There was no interaction between DO level (hypoxic/normoxic) and the larvae habitat-type origin. These results suggest that S. infraimmaculata larvae are locally adapted to their aquatic breeding habitat through the plastic ability to respond to the prevailing respiratory conditions by rapidly decreasing or increasing gill size.

Data on the diet composition of Hippocampus guttulatus cuvier, 1829: Different prey preferences among habitats

The data presented here support research article entitled ‘Trophic flexibility and prey selection of the wild long-snouted seahorse Hippocampus guttulatus Cuvier, 1829 in three coastal habitats’’ Ape et al., 2019. Determinations of the dietary composition, differences in prey selection and potential prey abundance and availability among three habitats at Taranto Mar Piccolo were based on the analysis of gut contents of seahorses and sediment samples. Both highly (Corallina elongata and Cladophora prolifera) and low complex (sandy bottom) habitats were investigated. Prey items were divided into two size classes: <1 mm and >1mm. Data about the total abundance of each prey size class in gut contents and sediments in three different habitats and PERMANOVA comparisons are given.

Horizontal distribution of pelagic crustacean zooplankton biomass and body size in contrasting habitat types in Lake Poyang, China

To evaluate the possible effects of habitat type on crustacean plankton (hereafter zooplankton) biomass and body size, a 5-year study (2011 to 2015) was conducted during wet seasons in three habitats in Lake Poyang, China. The lacustrine habitat with the most stable hydrologic regime had the highest zooplankton biomass coinciding with the highest phytoplankton biomass. The riverine habitat with the lowest Secchi depth overall had the largest zooplankton body size, but high zooplankton biomass only in high water level years. The seasonally inundated floodplain habitats had the lowest zooplankton biomass and the smallest individual body size, coinciding with the lowest phytoplankton biomass and the highest predation pressure, the latter indicated by a low zooplankton: phytoplankton biomass ratio (ZB:PB). Multiple linear regression analyses indicated that pelagic zooplankton assemblages were primarily influenced by phytoplankton biomass in lacustrine habitat, by advection and turbidity in riverine regions, and by predation pressure in seasonally inundated floodplain region. We conclude that the importance of bottom-up and top-down effects on zooplankton biomass and body size varied with habitat type in Lake Poyang.

Environmental and physiological determinants of huddling behavior of molting female southern elephant seals (Mirounga leonina)

While endotherms can rely on their insulation to reduce heat loss to adapt to cold environments, renewing of fur during molt impairs insulation while they have to perfuse the periphery to support epidermal tissues. The southern elephant seal Mirounga leonina undertakes an annual catastrophic molt while fasting on land in a wet, windy and cold environment. However, southern elephant seals show characteristic aggregation patterns that are predicted to reduce high metabolic costs during the molt. Between 2012 and 2016, 59 female elephant seals were tracked on land during their molt to study their aggregation behavior in relation to molt stage, habitat type and local weather conditions. Infrared thermography and stomach temperature loggers were used to observe variation in body surface and internal temperature in relation to molt stage and aggregation behavior. We found that thermal constraints varied during the molt, with a peak in surface temperature during the mid-stage of the molt. Wallows (mud pools) appear as favorable habitat to aggregate while molting. Indeed, wallows offered a warmer microclimate with greater ground temperature and lower wind speed. Moreover, there was a greater proportion of aggregated seals and larger group size in wallows. These aggregation patterns in wallows were influenced by local weather such that a greater proportion of seals were located in the center of the aggregation, and larger group size occurred during days of unfavorable meteorological conditions. We also observed a higher proportion of seals at mid-stage of molt amongst aggregated seals compared to isolated individuals. This aggregation behavior may reduce the cost of thermogenesis as surface body temperature and stomach temperature were cooler by 1.0 °C and 1.5 °C, respectively, in aggregated compared to isolated seals. As a consequence, huddling behavior may be thermally advantageous for female southern elephant seals during the molt.

Diet of otters (Lutra lutra) in various habitat types in the Pannonian biogeographical region compared to other regions of Europe

Knowledge of the effect of habitat type and region on diet and feeding behaviours of a species facilitates a better understanding of factors impacting populations, which contributes to effective conservation management. Using spraint analysis and relative frequency of occurrence data from the literature, we described the dietary patterns of Eurasian otters (Lutra lutra) in 23 study sites within the Pannonian biogeographical region in Hungary. Our results indicated that diet composition varied by habitat type and is therefore context dependant. The differences among habitat types were however lower than expected. We noticed a decline in the fish consumption with a concomitant increase in trophic niche breadth and amphibian consumption in rivers, ponds (fish farms), backwaters, marshes and small watercourses. The main differences in diet were not attributed to the consumption of primary and secondary food types (fish and amphibians), but rather to differences in other, less important food types (mammals, birds). Using hierarchical cluster analysis, rivers and ponds could clearly be separated from other habitat types. We found the main fish diet of otters in most of these areas consisted of small (<100 g), eurytopic, littoral and non-native, mostly invasive species. Dietary studies from 91 sites in six European biogeographical regions showed that fish are consumed most frequently in the Atlantic and Boreal, less in the Continental and Pannonian, and least in the Alpine and Mediterranean regions. Comparative analysis indicated that the Mediterranean region (with frequent crayfish consumption) and Alpine region (frequent amphibian consumption) cluster separate from the other regions.

Noise-Dependent Fish Distribution in Kelp Beds

The marine marbled rockfish Sebastiscus marmoratus is dependent on kelp beds and rocks for survival and reproduction. We found that sound production and hearing sensitivity in S. marmoratus are closely matched in the frequency domain. We also found that the juvenile rockfish prefers the habitat of the larger macroalgae Sargassum horueri rather than the habitat containing the smaller algae Ulva pertusa where the adult rockfish prefers to live. Our underwater noise recording data from these two habitats indicate that their spectra of the background noise have different values. The results suggest that the acoustic cues may be critical for pelagic larvae when selecting the preferential habitat in which to settle.

Age-related habitat selection by brown forest skinks (Sphenomorphus indicus)

In reptiles, habitat selection is the process whereby suitable habitat is selected that optimizes physiological functions and behavioral performance. Here, we used the brown forest skink (Sphenomorphus indicus) as a model animal and examined whether the frequency of active individuals, environmental temperature, illumination of activity area, and habitat type vary with different age classes. We surveyed the number of active individuals and measured environmental variables at Baiyunshan Mountain in Lishui, Zhejiang, China. We found no difference in the activity frequency of adult and juvenile S. indicus; the activity pattern of active individuals was bimodal. The mean environmental temperature selected by adults was higher than that selected by juveniles. The environmental temperature of active areas measured at 0900-1000 h and 1100-1200 h was higher than at 1400-1500 h; illumination of the active area at 1000-1200 h was also higher than at 1400 h-1600 h. The number of active individuals, the environmental temperature and illumination of activity areas showed pairwise positive correlation. There was a difference in habitat type between juveniles and adults whereby juveniles prefer rock habitats. We predict that active S. indicus select optimal habitats with different environmental temperatures and types to reach the physiological needs particular to their age classes.

Habitat-specific clutch size and cost of incubation in common eiders, Somateria mollissima

Common eiders, Somateria mollissima, breed on two types of island in the Northern Baltic: open, sparsely vegetated islands and wooded islands with dense mixed forests. On open islands 79.8% of the nests were on open cliffs, exposed to wind and rain whereas on wooded islands 91.7% of the nests were sheltered inside dense spruce and pine thickets. We found that clutch size on open islands was significantly smaller than on wooded islands. Females started breeding simultaneously in the two habitats and they were similar in body size as measured by the length of the radio-ulna. During incubation females on open islands lost weight at a faster rate than females on wooded islands (34 g/day and 19 g/day, respectively). Heat loss is faster on open than wooded islands and therefore we suggest that the faster weight loss of females on open islands result from thermodynamically adverse incubation conditions. Because the eider is an extreme capital breeder, energy used for egg production cannot be used for incubation. To sustain a higher incubation cost on open islands, the optimal clutch size is therefore lower than on wooded islands.