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Veenhof RJ, Champion C, Dworjanyn SA, Schwoerbel J, Visch W, Coleman MA. Projecting kelp (Ecklonia radiata) gametophyte thermal adaptation and persistence under climate change. Ann Bot 2024; 133:153-168. [PMID: 37665952 PMCID: PMC10921825 DOI: 10.1093/aob/mcad132] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Accepted: 09/01/2023] [Indexed: 09/06/2023]
Abstract
BACKGROUND AND AIMS Kelp forests underpin temperate marine ecosystems but are declining due to ocean warming, causing loss of associated ecosystem services. Projections suggest significant future decline but often only consider the persistence of adult sporophytes. Kelps have a biphasic life cycle, and the haploid gametophyte can be more thermally tolerant than the sporophyte. Therefore, projections may be altered when considering the thermal tolerance of gametophytes. METHODS We undertook thermal tolerance experiments to quantify the effect of temperature on gametophyte survival, relative growth rate (RGR) and sex ratio for three genetically distinct populations of Ecklonia radiata gametophytes from comparatively high, mid- and low latitudes (43°, 33° and 30°S). We then used these data to project the likely consequences of climate-induced thermal change on gametophyte persistence and performance across its eastern Australian range, using generalized additive and linear models. KEY RESULTS All populations were adapted to local temperatures and their thermal maximum was 2-3 °C above current maximum in situ temperatures. The lowest latitude population was most thermally tolerant (~70 % survival up to 27 °C), while survival and RGR decreased beyond 25.5 and 20.5 °C for the mid- and low-latitude populations, respectively. Sex ratios were skewed towards females with increased temperature in the low- and high-latitude populations. Spatially explicit model projections under future ocean warming (2050-centred) revealed a minimal decline in survival (0-30 %) across populations, relative to present-day predictions. RGRs were also projected to decline minimally (0-2 % d-1). CONCLUSIONS Our results contrast with projections for the sporophyte stage of E. radiata, which suggest a 257-km range contraction concurrent with loss of the low-latitude population by 2100. Thermal adaptation in E. radiata gametophytes suggests this life stage is likely resilient to future ocean warming and is unlikely to be a bottleneck for the future persistence of kelp.
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Affiliation(s)
- R J Veenhof
- National Marine Science Centre, Faculty of Science and Engineering, Southern Cross University, Coffs Harbour, NSW, Australia
| | - C Champion
- National Marine Science Centre, Faculty of Science and Engineering, Southern Cross University, Coffs Harbour, NSW, Australia
- Fisheries Research, NSW Department of Primary Industries, National Marine Science Centre, Coffs Harbour, NSW, Australia
| | - S A Dworjanyn
- National Marine Science Centre, Faculty of Science and Engineering, Southern Cross University, Coffs Harbour, NSW, Australia
| | - J Schwoerbel
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Tasmania, Australia
| | - W Visch
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Tasmania, Australia
| | - M A Coleman
- National Marine Science Centre, Faculty of Science and Engineering, Southern Cross University, Coffs Harbour, NSW, Australia
- Fisheries Research, NSW Department of Primary Industries, National Marine Science Centre, Coffs Harbour, NSW, Australia
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Nimbs MJ, Champion C, Lobos SE, Malcolm HA, Miller AD, Seinor K, Smith SD, Knott N, Wheeler D, Coleman MA. Genomic analyses indicate resilience of a commercially and culturally important marine gastropod snail to climate change. PeerJ 2023; 11:e16498. [PMID: 38025735 PMCID: PMC10676721 DOI: 10.7717/peerj.16498] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Accepted: 10/31/2023] [Indexed: 12/01/2023] Open
Abstract
Genomic vulnerability analyses are being increasingly used to assess the adaptability of species to climate change and provide an opportunity for proactive management of harvested marine species in changing oceans. Southeastern Australia is a climate change hotspot where many marine species are shifting poleward. The turban snail, Turbo militaris is a commercially and culturally harvested marine gastropod snail from eastern Australia. The species has exhibited a climate-driven poleward range shift over the last two decades presenting an ongoing challenge for sustainable fisheries management. We investigate the impact of future climate change on T. militaris using genotype-by-sequencing to project patterns of gene flow and local adaptation across its range under climate change scenarios. A single admixed, and potentially panmictic, demographic unit was revealed with no evidence of genetic subdivision across the species range. Significant genotype associations with heterogeneous habitat features were observed, including associations with sea surface temperature, ocean currents, and nutrients, indicating possible adaptive genetic differentiation. These findings suggest that standing genetic variation may be available for selection to counter future environmental change, assisted by widespread gene flow, high fecundity and short generation time in this species. We discuss the findings of this study in the content of future fisheries management and conservation.
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Affiliation(s)
- Matt J. Nimbs
- National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, Australia
- NSW Department of Primary Industries, Fisheries, National Marine Science Centre, Coffs Harbour, Australia
| | - Curtis Champion
- National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, Australia
- NSW Department of Primary Industries, Fisheries, National Marine Science Centre, Coffs Harbour, Australia
| | - Simon E. Lobos
- Deakin Genomics Centre, Deakin University, Geelong, Vic, Australia
- School of Life and Environmental Sciences, Deakin University, Warrnambool, Vic, Australia
| | - Hamish A. Malcolm
- NSW Department of Primary Industries, Fisheries Research, Coffs Harbour, NSW, Australia
| | - Adam D. Miller
- Deakin Genomics Centre, Deakin University, Geelong, Vic, Australia
- School of Life and Environmental Sciences, Deakin University, Warrnambool, Vic, Australia
| | - Kate Seinor
- National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, Australia
| | - Stephen D.A. Smith
- National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, Australia
- Aquamarine Australia, Mullaway, NSW, Australia
| | - Nathan Knott
- NSW Department of Primary Industries, Fisheries Research, Huskisson, NSW, Australia
| | - David Wheeler
- NSW Department of Primary Industries, Orange, NSW, Australia
| | - Melinda A. Coleman
- National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, Australia
- NSW Department of Primary Industries, Fisheries, National Marine Science Centre, Coffs Harbour, Australia
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Veenhof RJ, Coleman MA, Champion C, Dworjanyn SA. Urchin grazing of kelp gametophytes in warming oceans. J Phycol 2023; 59:838-855. [PMID: 37432133 DOI: 10.1111/jpy.13364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Revised: 06/08/2023] [Accepted: 06/09/2023] [Indexed: 07/12/2023]
Abstract
Sea urchins can cause extensive damage to kelp forests, and their overgrazing can create extensive barren areas, leading to a loss of biodiversity. Barrens may persist when the recruitment of kelp, which occurs through the microscopic haploid gametophyte stage, is suppressed. However, the ecology of kelp gametophytes is poorly understood, and here we investigate if grazing by juvenile urchins on kelp gametophytes can suppress kelp recruitment and if this is exacerbated by climate change. We compared grazing of Ecklonia radiata gametophytes by two species of juvenile urchins, the tropical Tripneustes gratilla and the temperate Centrostephanus rodgersii, at winter (19°C), summer (23°C), and ocean warming (26°C) temperatures for the low-latitude range edge of E. radiata, which is vulnerable to ocean warming. We examined the rate of recovery of gametophytes following grazing and determined whether they survived and formed sporophytes after ingestion by sea urchins. Both T. gratilla and C. rodgersii grazed E. radiata gametophytes, reducing their abundance compared to no grazing controls. Surprisingly, temperature did not influence grazing rates, but gametophytes did not recover from grazing in the ocean warming (26°C) treatment. Gametophytes survived ingestion by both species of sea urchin and formed sporophytes after ingestion by T. gratilla, but not C. rodgersii. These results suggest complex grazer-gametophyte interactions, in which both negative (reduced abundance and poor recovery with warming) and positive (facilitated recruitment) effects are possible. Small grazers may play a more important role in kelp ecosystem function than previously thought and should be considered in our understanding of alternate stable states.
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Affiliation(s)
- Reina J Veenhof
- National Marine Science Centre, Faculty of Environment, Science and Engineering, Southern Cross University, Coffs Harbour, New South Wales, Australia
| | - Melinda A Coleman
- National Marine Science Centre, Faculty of Environment, Science and Engineering, Southern Cross University, Coffs Harbour, New South Wales, Australia
- NSW Department of Primary Industries, National Marine Science Centre, Coffs Harbour, New South Wales, Australia
| | - Curtis Champion
- National Marine Science Centre, Faculty of Environment, Science and Engineering, Southern Cross University, Coffs Harbour, New South Wales, Australia
- NSW Department of Primary Industries, National Marine Science Centre, Coffs Harbour, New South Wales, Australia
| | - Symon A Dworjanyn
- National Marine Science Centre, Faculty of Environment, Science and Engineering, Southern Cross University, Coffs Harbour, New South Wales, Australia
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Shalders TC, Champion C, Coleman MA, Butcherine P, Broadhurst MK, Mead B, Benkendorff K. Impacts of seasonal temperatures, ocean warming and marine heatwaves on the nutritional quality of eastern school prawns (Metapenaeus macleayi). Sci Total Environ 2023; 876:162778. [PMID: 36906039 DOI: 10.1016/j.scitotenv.2023.162778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2022] [Revised: 01/26/2023] [Accepted: 03/06/2023] [Indexed: 06/18/2023]
Abstract
Ocean warming and marine heatwaves significantly alter environmental conditions in marine and estuarine environments. Despite their potential global importance for nutrient security and human health, it is not well understood how thermal impacts could alter the nutritional quality of harvested marine resources. We tested whether short-term experimental exposure to seasonal temperatures, projected ocean-warming temperatures, and marine heatwaves affected the nutritional quality of the eastern school prawn (Metapenaeus macleayi). In addition, we tested whether nutritional quality was affected by the duration of exposure to warm temperatures. We show the nutritional quality of M. macleayi is likely to be resilient to short- (28 d), but not longer-term (56 d) exposure to warming temperatures. The proximate, fatty acid and metabolite compositions of M. macleayi were unchanged after 28 d exposure to simulated ocean warming and marine heatwaves. The ocean-warming scenario did, however, show potential for elevated sulphur, iron and silver levels after 28 d. Decreasing saturation of fatty acids in M. macleayi after 28 d exposure to cooler temperatures indicates homeoviscous adaptation to seasonal changes. We found that 11 % of measured response variables were significantly different between 28 and 56 d when exposed to the same treatment, indicating the duration of exposure time and time of sampling are critical when measuring this species' nutritional response. Further, we found that future acute warming events could reduce harvestable biomass, despite survivors retaining their nutritional quality. Developing a combined knowledge of the variability in seafood nutrient content with shifts in the availability of harvested seafood is crucial for understanding seafood-derived nutrient security in a changing climate.
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Affiliation(s)
- Tanika C Shalders
- Faculty of Science and Engineering, National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, Australia; NSW Department of Primary Industries, National Marine Science Centre, Coffs Harbour, New South Wales, Australia.
| | - Curtis Champion
- Faculty of Science and Engineering, National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, Australia; NSW Department of Primary Industries, National Marine Science Centre, Coffs Harbour, New South Wales, Australia
| | - Melinda A Coleman
- Faculty of Science and Engineering, National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, Australia; NSW Department of Primary Industries, National Marine Science Centre, Coffs Harbour, New South Wales, Australia
| | - Peter Butcherine
- Faculty of Science and Engineering, National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, Australia
| | - Matt K Broadhurst
- Faculty of Science and Engineering, National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, Australia; NSW Department of Primary Industries, National Marine Science Centre, Coffs Harbour, New South Wales, Australia
| | - Bryan Mead
- Analytical Research Laboratory, Southern Cross Analytical and Research Services, Southern Cross University, Lismore, New South Wales, Australia
| | - Kirsten Benkendorff
- Faculty of Science and Engineering, National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, Australia
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5
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Davis TR, Champion C, Dalton S, Coleman MA. Are corals coming to a reef near you? Projected extension of suitable thermal conditions for hard coral communities along the east Australian coast. AUSTRAL ECOL 2023. [DOI: 10.1111/aec.13327] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/08/2023]
Affiliation(s)
- Tom R. Davis
- Fisheries Research, Marine Ecosystems NSW Department of Primary Industries PO Box 4321 Coffs Harbour New South Wales 2450 Australia
- National Marine Science Centre Southern Cross University 2 Bay Drive Coffs Harbour New South Wales Australia
| | - Curtis Champion
- Fisheries Research, Marine Ecosystems NSW Department of Primary Industries PO Box 4321 Coffs Harbour New South Wales 2450 Australia
- National Marine Science Centre Southern Cross University 2 Bay Drive Coffs Harbour New South Wales Australia
| | - Steve Dalton
- Fisheries and Aquaculture Management NSW Department of Primary Industries Level 2, 30 Park Avenue Coffs Harbour New South Wales Australia
| | - Melinda A. Coleman
- Fisheries Research, Marine Ecosystems NSW Department of Primary Industries PO Box 4321 Coffs Harbour New South Wales 2450 Australia
- National Marine Science Centre Southern Cross University 2 Bay Drive Coffs Harbour New South Wales Australia
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6
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Nimbs MJ, Wernberg T, Davis TR, Champion C, Coleman MA. Climate change threatens unique evolutionary diversity in Australian kelp refugia. Sci Rep 2023; 13:1248. [PMID: 36690643 PMCID: PMC9870953 DOI: 10.1038/s41598-023-28301-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Accepted: 01/17/2023] [Indexed: 01/24/2023] Open
Abstract
Climate change has driven contemporary decline and loss of kelp forests globally with an accompanying loss of their ecological and economic values. Kelp populations at equatorward-range edges are particularly vulnerable to climate change as these locations are undergoing warming at or beyond thermal tolerance thresholds. Concerningly, these range-edge populations may contain unique adaptive or evolutionary genetic diversity that is vulnerable to warming. We explore haplotype diversity by generating a Templeton-Crandall-Sing (TCS) network analysis of 119 Cytochrome C Oxidase (COI) sequences among four major population groupings for extant and putatively extinct populations only known from herbarium specimens of the dominant Laminarian kelp Ecklonia radiata in the south-western Pacific, a region warming at 2-4 times the global average. Six haplotypes occurred across the region with one being widespread across most populations. Three unique haplotypes were found in a deep-water range-edge population off Moreton Island, Queensland, which likely represents both a contemporary and historic refuge during periods of climatic change. Hindcasting E. radiata cover estimates using extant data, we reveal that this region likely supported the highest kelp cover in eastern Australia during the last glacial maximum. The equatorward range edge, deep-water kelp populations off Moreton Island represent a genetically diverse evolutionary refuge that is currently threatened by warming and requires prompt ex-situ conservation measures.
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Affiliation(s)
- Matt J Nimbs
- New South Wales Department of Primary Industries, National Marine Science Centre, Coffs Harbour, NSW, Australia.
- National Marine Science Centre, Southern Cross University, Coffs Harbour, NSW, Australia.
| | - Thomas Wernberg
- Oceans Institute and School of Biological Sciences, University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia
| | - Tom R Davis
- New South Wales Department of Primary Industries, National Marine Science Centre, Coffs Harbour, NSW, Australia
- National Marine Science Centre, Southern Cross University, Coffs Harbour, NSW, Australia
| | - Curtis Champion
- New South Wales Department of Primary Industries, National Marine Science Centre, Coffs Harbour, NSW, Australia
- National Marine Science Centre, Southern Cross University, Coffs Harbour, NSW, Australia
| | - Melinda A Coleman
- New South Wales Department of Primary Industries, National Marine Science Centre, Coffs Harbour, NSW, Australia
- National Marine Science Centre, Southern Cross University, Coffs Harbour, NSW, Australia
- Oceans Institute and School of Biological Sciences, University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia
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7
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Graba-Landry A, Champion C, Twiname S, Wolfe B, Haddy J, Mossop D, Pecl G, Tracey SR. Citizen science aids the quantification of the distribution and prediction of present and future temporal variation in habitat suitability at species’ range edges. Frontiers of Biogeography 2023. [DOI: 10.21425/f5fbg58207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2023] Open
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8
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Darbyshire RO, Johnson SB, Anwar MR, Ataollahi F, Burch D, Champion C, Coleman MA, Lawson J, McDonald SE, Miller M, Mo J, Timms M, Sun D, Wang B, Pardoe J. Climate change and Australia's primary industries: factors hampering an effective and coordinated response. Int J Biometeorol 2022; 66:1045-1056. [PMID: 35266045 DOI: 10.1007/s00484-022-02265-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Revised: 12/03/2021] [Accepted: 03/02/2022] [Indexed: 06/14/2023]
Abstract
Australia's primary production sector operates in one of the world's most variable climates with future climate change posing a challenge to its ongoing sustainability. Recognising this, Australia has invested in understanding climate change risks to primary production with a substantial amount of research produced. Recently, focus on this research space has broadened, with interests from the financial sector and expanded scopes of works from government and industry. These expanded needs require sector- and country-wide assessments to assist with the implementation of climate strategies. We considered the applicability of the current research body for these needs by reviewing 188 peer-reviewed studies that considered the quantitative impacts of climate change on Australia's primary industries. Our broad review includes cropping, livestock, horticulture, forestry and fisheries and biosecurity threats. This is the first such review for Australia, and no other similar country-wide review was found. We reviewed the studies through three lenses, industry diversity, geographic coverage and study comparability. Our results show that all three areas are lacking for sector- and country-wide assessments. Industry diversity was skewed towards cropping and biosecurity threats (64% of all studies) with wheat in particular a major focus (25% of all studies). Geographic coverage at a state level appeared to be evenly distributed across the country; however, when considered in conjunction with industry focus, gaps emerged. Study comparability was found to be very limited due to the use of different historical baseline periods and different impact models. We make several recommendations to assist with future research directions, being (1) co-development of a standard set of method guidelines for impact assessments, (2) filling industry and geographic knowledge gaps, and (3) improving transparency in study method descriptions. Uptake of these recommendations will improve study application and transparency enabling and enhancing responses to climate change in Australia's primary industries.
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Affiliation(s)
- Rebecca Olive Darbyshire
- CSIRO Agriculture and Food, Canberra, Australia.
- NSW Department of Primary Industries, 11 Farrer Pl, Queanbeyan, NSW, 2602, Australia.
| | - Stephen B Johnson
- Weed Research Unit, Department of Primary Industries, Orange Agricultural Institute, Orange, NSW, 2800, Australia
- Graham Centre for Agricultural Innovation, Wagga Wagga, NSW, 2650, Australia
| | - Muhuddin Rajin Anwar
- Graham Centre for Agricultural Innovation, Wagga Wagga, NSW, 2650, Australia
- NSW Department of Primary Industries, Wagga Wagga Agricultural Institute, Pine Gully Road, Wagga Wagga, NSW, 2650, Australia
| | - Forough Ataollahi
- NSW Department of Primary Industries, Wagga Wagga Agricultural Institute, Pine Gully Road, Wagga Wagga, NSW, 2650, Australia
| | - David Burch
- NSW Department of Primary Industries, 152 Fifield Rd, Condobolin, NSW, 2877, Australia
| | - Curtis Champion
- NSW Fisheries, Department of Primary Industries, National Marine Science Centre, 2 Bay Drive, Coffs Harbour, NSW, 2450, Australia
- Southern Cross University, National Marine Science Centre, Coffs Harbour, NSW, 2450, Australia
| | - Melinda A Coleman
- NSW Fisheries, Department of Primary Industries, National Marine Science Centre, 2 Bay Drive, Coffs Harbour, NSW, 2450, Australia
| | - James Lawson
- NSW Department of Primary Industries, 11 Farrer Pl, Queanbeyan, NSW, 2602, Australia
| | - Sarah E McDonald
- NSW Department of Primary Industries, Trangie Agricultural Research Centre, Trangie, NSW, 2823, Australia
| | - Michelle Miller
- NSW Department of Primary Industries, Wagga Wagga Agricultural Institute, Pine Gully Road, Wagga Wagga, NSW, 2650, Australia
| | - Jianhua Mo
- NSW Department of Primary Industries, 2198 Irrigation Way East, Yanco, NSW, 2703, Australia
| | - Mary Timms
- NSW Department of Primary Industries, Orange Agricultural Institute, Orange, NSW, 2800, Australia
| | - Daowei Sun
- NSW Department of Primary Industries, Australian Cotton Research Institute, Narrabri, NSW, 2390, Australia
| | - Bin Wang
- NSW Department of Primary Industries, Wagga Wagga Agricultural Institute, Pine Gully Road, Wagga Wagga, NSW, 2650, Australia
| | - Joanna Pardoe
- NSW Department of Primary Industries, Orange Agricultural Institute, Orange, NSW, 2800, Australia
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Shalders TC, Champion C, Coleman MA, Benkendorff K. The nutritional and sensory quality of seafood in a changing climate. Mar Environ Res 2022; 176:105590. [PMID: 35255319 DOI: 10.1016/j.marenvres.2022.105590] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Revised: 02/14/2022] [Accepted: 02/19/2022] [Indexed: 06/14/2023]
Abstract
Climate change is impacting living marine resources, whilst concomitantly, global reliance on seafood as a source of nutrition is increasing. Here we review an emerging research frontier, identifying significant impacts of climate-driven environmental change on the nutritional and sensory quality of seafood, and implications for human health. We highlight that changing ocean temperature, pH and salinity can lead to reductions in seafood macro and micronutrients, including essential nutrients such as protein and lipids. However, the nutritional quality of seafood appears to be more resilient in taxa that inhabit naturally variable environments such as estuaries and shallow near-coastal habitats. We develop criteria for assessing confidence in categorising the nutritional quality of seafood as vulnerable or resilient to climate change. The application of this criteria to a subset of seafood nutritional studies demonstrates confidence levels are generally low and could be improved by more realistic experimental designs and research collaboration. We highlight knowledge gaps to guide future research in this emerging field.
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Affiliation(s)
- Tanika C Shalders
- National Marine Science Centre, Southern Cross University, Faculty of Science and Engineering, Coffs Harbour, New South Wales, Australia; Fisheries Research, NSW Department of Primary Industries, National Marine Science Centre, Coffs Harbour, New South Wales, Australia.
| | - Curtis Champion
- National Marine Science Centre, Southern Cross University, Faculty of Science and Engineering, Coffs Harbour, New South Wales, Australia; Fisheries Research, NSW Department of Primary Industries, National Marine Science Centre, Coffs Harbour, New South Wales, Australia
| | - Melinda A Coleman
- National Marine Science Centre, Southern Cross University, Faculty of Science and Engineering, Coffs Harbour, New South Wales, Australia; Fisheries Research, NSW Department of Primary Industries, National Marine Science Centre, Coffs Harbour, New South Wales, Australia
| | - Kirsten Benkendorff
- National Marine Science Centre, Southern Cross University, Faculty of Science and Engineering, Coffs Harbour, New South Wales, Australia
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Coleman MA, Reddy M, Nimbs MJ, Marshell A, Al-Ghassani SA, Bolton JJ, Jupp BP, De Clerck O, Leliaert F, Champion C, Pearson GA, Serrão EA, Madeira P, Wernberg T. Loss of a globally unique kelp forest from Oman. Sci Rep 2022; 12:5020. [PMID: 35322059 PMCID: PMC8943203 DOI: 10.1038/s41598-022-08264-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2021] [Accepted: 03/04/2022] [Indexed: 11/08/2022] Open
Abstract
Kelp forests are declining in many regions globally with climatic perturbations causing shifts to alternate communities and significant ecological and economic loss. Range edge populations are often at most risk and are often only sustained through localised areas of upwelling or on deeper reefs. Here we document the loss of kelp forests (Ecklonia radiata) from the Sultanate of Oman, the only confirmed northern hemisphere population of this species. Contemporary surveys failed to find any kelp in its only known historical northern hemisphere location, Sadah on the Dhofar coast. Genetic analyses of historical herbarium specimens from Oman confirmed the species to be E. radiata and revealed the lost population contained a common CO1 haplotype found across South Africa, Australia and New Zealand suggesting it once established through rapid colonisation throughout its range. However, the Omani population also contained a haplotype that is found nowhere else in the extant southern hemisphere distribution of E. radiata. The loss of the Oman population could be due to significant increases in the Arabian Sea temperature over the past 40 years punctuated by suppression of coastal upwelling. Climate-mediated warming is threatening the persistence of temperate species and precipitating loss of unique genetic diversity at lower latitudes.
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Affiliation(s)
- M A Coleman
- National Marine Science Centre, New South Wales Fisheries, 2 Bay Drive, Coffs Harbour, NSW, 2450, Australia.
- National Marine Science Centre, Southern Cross University, 2 Bay Drive, Coffs Harbour, NSW, 2450, Australia.
- UWA Oceans Institute and School of Biological Sciences, University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia.
| | - M Reddy
- Department of Biological Sciences, University of Cape Town, Private Bag X3, Cape Town, 7701, South Africa
| | - M J Nimbs
- National Marine Science Centre, New South Wales Fisheries, 2 Bay Drive, Coffs Harbour, NSW, 2450, Australia
- National Marine Science Centre, Southern Cross University, 2 Bay Drive, Coffs Harbour, NSW, 2450, Australia
| | - A Marshell
- Department of Marine Science and Fisheries, College of Agricultural and Marine Sciences, Sultan Qaboos University, Muscat, Oman
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Australia
| | - S A Al-Ghassani
- Fisheries Research Centre - Dhofar, Directorate General of Fisheries Research, Ministry of Agriculture, Fisheries and Water Resource, Salalah, Sultanate of Oman
| | - J J Bolton
- Department of Biological Sciences, University of Cape Town, Private Bag X3, Cape Town, 7701, South Africa
| | - B P Jupp
- Senior Consultant - Marine, P.O. Box 389, Puerto Princesa, Palawan, 5300, Philippines
| | - O De Clerck
- Biology Department, Ghent University, Krijgslaan 281, Building S8, 9000, Ghent, Belgium
| | - F Leliaert
- Biology Department, Ghent University, Krijgslaan 281, Building S8, 9000, Ghent, Belgium
- Meise Botanic Garden, Nieuwelaan 38, 1860, Meise, Belgium
| | - C Champion
- National Marine Science Centre, New South Wales Fisheries, 2 Bay Drive, Coffs Harbour, NSW, 2450, Australia
- National Marine Science Centre, Southern Cross University, 2 Bay Drive, Coffs Harbour, NSW, 2450, Australia
| | - G A Pearson
- CCMAR, CIMAR, University of Algarve, Gambelas, 8005-139, Faro, Portugal
| | - E A Serrão
- CCMAR, CIMAR, University of Algarve, Gambelas, 8005-139, Faro, Portugal
| | - P Madeira
- CCMAR, CIMAR, University of Algarve, Gambelas, 8005-139, Faro, Portugal
| | - T Wernberg
- UWA Oceans Institute and School of Biological Sciences, University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia
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Affiliation(s)
- Tom R. Davis
- Fisheries Research Marine Ecosystems NSW Department of Primary Industries Coffs Harbour New South Wales Australia
- National Marine Science Centre Southern Cross University Coffs Harbour New South Wales Australia
| | - Curtis Champion
- Fisheries Research Marine Ecosystems NSW Department of Primary Industries Coffs Harbour New South Wales Australia
- National Marine Science Centre Southern Cross University Coffs Harbour New South Wales Australia
| | - Melinda A. Coleman
- Fisheries Research Marine Ecosystems NSW Department of Primary Industries Coffs Harbour New South Wales Australia
- National Marine Science Centre Southern Cross University Coffs Harbour New South Wales Australia
- Oceans Institute and School of Biological Sciences University of Western Australia Crawley Western Australia Australia
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12
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Gervais CR, Champion C, Pecl GT. Species on the move around the Australian coastline: A continental-scale review of climate-driven species redistribution in marine systems. Glob Chang Biol 2021; 27:3200-3217. [PMID: 33835618 PMCID: PMC8251616 DOI: 10.1111/gcb.15634] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2020] [Accepted: 03/23/2021] [Indexed: 05/02/2023]
Abstract
Climate-driven changes in the distribution of species are a pervasive and accelerating impact of climate change, and despite increasing research effort in this rapidly emerging field, much remains unknown or poorly understood. We lack a holistic understanding of patterns and processes at local, regional and global scales, with detailed explorations of range shifts in the southern hemisphere particularly under-represented. Australian waters encompass the world's third largest marine jurisdiction, extending from tropical to sub-Antarctic climate zones, and have waters warming at rates twice the global average in the north and two to four times in the south. Here, we report the results of a multi-taxon continent-wide review describing observed and predicted species redistribution around the Australian coastline, and highlight critical gaps in knowledge impeding our understanding of, and response to, these considerable changes. Since range shifts were first reported in the region in 2003, 198 species from nine Phyla have been documented shifting their distribution, 87.3% of which are shifting poleward. However, there is little standardization of methods or metrics reported in observed or predicted shifts, and both are hindered by a lack of baseline data. Our results demonstrate the importance of historical data sets and underwater visual surveys, and also highlight that approximately one-fifth of studies incorporated citizen science. These findings emphasize the important role the public has had, and can continue to play, in understanding the impact of climate change. Most documented shifts are of coastal fish species in sub-tropical and temperate systems, while tropical systems in general were poorly explored. Moreover, most distributional changes are only described at the poleward boundary, with few studies considering changes at the warmer, equatorward range limit. Through identifying knowledge gaps and research limitations, this review highlights future opportunities for strategic research effort to improve the representation of Australian marine species and systems in climate-impact research.
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Affiliation(s)
- Connor R. Gervais
- Department of Biological SciencesMacquarie UniversitySydneyNSWAustralia
| | - Curtis Champion
- Fisheries ResearchNSW Department of Primary IndustriesCoffs HarbourNSWAustralia
- Southern Cross UniversityNational Marine Science CentreCoffs HarbourNSWAustralia
| | - Gretta T. Pecl
- Institute for Marine and Antarctic StudiesUniversity of TasmaniaHobartTasAustralia
- Centre for Marine SocioecologyUniversity of TasmaniaHobartTasAustralia
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13
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Davis TR, Champion C, Coleman MA. Climate refugia for kelp within an ocean warming hotspot revealed by stacked species distribution modelling. Mar Environ Res 2021; 166:105267. [PMID: 33601331 DOI: 10.1016/j.marenvres.2021.105267] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Revised: 01/28/2021] [Accepted: 01/29/2021] [Indexed: 06/12/2023]
Abstract
Canopy forming macroalgae are declining globally due to climate change and the identification of refuges for these habitats is crucial for their conservation. This is particularly pertinent in ocean warming hotspots where significant range contractions of kelp have occurred and are projected to continue. We developed a stacked urchin-kelp species distribution model (SDM) to predict climate refugia for kelp (Ecklonia radiata) in an ocean warming hotspot, south-eastern Australia. The optimal stacked-SDM incorporated biotic and abiotic explanatory covariates and was validated using an independent dataset. Density of the urchin Centrostephanus rodgersii, summer bottom temperature and photosynthetically available radiation at the seabed were significant predictors of kelp cover, highlighting the physiological and ecological influence of these variables on the distribution of kelp. Our optimal stacked-SDM predicted three spatially distinct refuge areas, where kelp occurs in deeper waters than surrounding seascapes. The presence of kelp at two of these refuge areas was confirmed using independent data. The identification of these refuge areas is crucial for conservation, as they are likely to facilitate the persistence of ecologically and economically important kelp forests as waters warm in shallow areas and kelp retreat to depth under climate change. Furthermore, identification of refugia will enable proactive spatial planning that prioritises new locations for protection to ensure that key kelp habitats can persist in a future of increasing stress.
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Affiliation(s)
- T R Davis
- Fisheries Research, Marine Ecosystems, NSW Department of Primary Industries, PO Box 4321, Coffs Harbour, NSW, 2450, Australia; National Marine Science Centre, Southern Cross University, 2 Bay Drive, Coffs Harbour, Australia.
| | - C Champion
- Fisheries Research, Marine Ecosystems, NSW Department of Primary Industries, PO Box 4321, Coffs Harbour, NSW, 2450, Australia; National Marine Science Centre, Southern Cross University, 2 Bay Drive, Coffs Harbour, Australia
| | - M A Coleman
- Fisheries Research, Marine Ecosystems, NSW Department of Primary Industries, PO Box 4321, Coffs Harbour, NSW, 2450, Australia; National Marine Science Centre, Southern Cross University, 2 Bay Drive, Coffs Harbour, Australia
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14
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Champion C, Broadhurst MK, Ewere EE, Benkendorff K, Butcherine P, Wolfe K, Coleman MA. Resilience to the interactive effects of climate change and discard stress in the commercially important blue swimmer crab (Portunus armatus). Mar Environ Res 2020; 159:105009. [PMID: 32662439 DOI: 10.1016/j.marenvres.2020.105009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 04/30/2020] [Accepted: 04/30/2020] [Indexed: 06/11/2023]
Abstract
Globally, millions of people depend on nutritional benefits from seafood consumption, but few studies have tested for effects of near-future climate change on seafood health and quality. Quantitative assessments of the interactive effects of climate change and discarding of fisheries resources are also lacking, despite ~10% of global catches being discarded annually. Utilising the harvested blue swimmer crab (Portunus armatus), we experimentally tested the effects of near-future temperature and salinity treatments under simulated capture and discarding on a suite of health and nutritional quality parameters. We show that nutritional quality (protein, lipids, moisture content and fatty acid composition) was not significantly affected by near-future climate change. Further, stress biomarkers (catalase and glutathione S-transferases activity and glycogen content) did not differ significantly among treatments following simulated capture and discarding. These results support the inherent resilience of P. armatus to short-term environmental change, and indicate that negative physiological responses associated with discarding may not be exacerbated in a future ocean. We suggest that harvested estuarine species, and thus the industries and food security they underpin, may be resilient to the future effects of climate change due to their adaptation to naturally variable habitats.
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Affiliation(s)
- Curtis Champion
- NSW Department of Primary Industries, National Marine Science Centre, Coffs Harbour, New South Wales, Australia; National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, Australia.
| | - Matt K Broadhurst
- NSW Department of Primary Industries, National Marine Science Centre, Coffs Harbour, New South Wales, Australia
| | - Endurance E Ewere
- Marine Ecology Research Centre, School of Environment, Science and Engineering, Southern Cross University, Lismore, New South Wales, Australia
| | - Kirsten Benkendorff
- National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, Australia; Marine Ecology Research Centre, School of Environment, Science and Engineering, Southern Cross University, Lismore, New South Wales, Australia
| | - Peter Butcherine
- National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, Australia; Marine Ecology Research Centre, School of Environment, Science and Engineering, Southern Cross University, Lismore, New South Wales, Australia
| | - Kennedy Wolfe
- Marine Spatial Ecology Lab, School of Biological Sciences and ARC Centre of Excellence for Coral Reef Studies, University of Queensland, St Lucia, Queensland, Australia
| | - Melinda A Coleman
- NSW Department of Primary Industries, National Marine Science Centre, Coffs Harbour, New South Wales, Australia; National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, Australia
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15
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Singh P, Purohit G, Champion C, Sébilleau D, Madison D. Low energy electron and positron impact differential cross sections for the ionization of water molecules in the coplanar and perpendicular kinematics. J Chem Phys 2019; 150:054304. [PMID: 30736694 DOI: 10.1063/1.5088966] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We report here triply differential cross sections (TDCSs) for 81 eV electron and positron-impact ionization of the combined (1b1 + 3a1) orbitals of the water molecule by using the second-order distorted wave Born approximation (DWBA2) for ejection electron and positron energies of 5 eV and 10 eV and different momentum transfer conditions. The electron-impact TDCS will be compared with the experimental data measured by Ren et al. [Phys. Rev. A 95, 022701 (2017)] and with the molecular 3-body distorted wave (M3DW) approximation results in the scattering plane as well as the perpendicular plane. The DWBA2 results are in better agreement with the experiment than the M3DW results for the scattering plane, and the M3DW results are somewhat better for the perpendicular plane. This observation is explained in terms of collision interactions. The electron and positron TDCSs are indistinguishable in the scattering plane. In the perpendicular plane, the positron results are similar in shape, but smaller in magnitude. However, the difference reduces with increasing projectile scattering angle and increasing ejected electron energy.
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Affiliation(s)
- P Singh
- Department of Physics, School of Engineering, Sir Padampat Singhania University, Bhatewar, Udaipur 313 601, India
| | - G Purohit
- Department of Physics, University College of Science, M.L.S. University, Udaipur 313001, India
| | - C Champion
- Centre d'Études Lasers et Applications (CELIA), Université Bordeaux, 33400 Talence, France
| | - D Sébilleau
- Departement Matériaux-Nanosciences Institut de Physique de Rennes 35042 Rennes, France
| | - D Madison
- Physics Department, Missouri University of Science and Technology, Rolla, Missouri 65409, USA
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16
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Champion C, Hobday AJ, Tracey SR, Pecl GT. Rapid shifts in distribution and high-latitude persistence of oceanographic habitat revealed using citizen science data from a climate change hotspot. Glob Chang Biol 2018; 24:5440-5453. [PMID: 30003633 DOI: 10.1111/gcb.14398] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2017] [Accepted: 06/26/2018] [Indexed: 06/08/2023]
Abstract
The environmental effects of climate change are predicted to cause distribution shifts in many marine taxa, yet data are often difficult to collect. Quantifying and monitoring species' suitable environmental habitats is a pragmatic approach for assessing changes in species distributions but is underdeveloped for quantifying climate change induced range shifts in marine systems. Specifically, habitat predictions present opportunities for quantifying spatiotemporal distribution changes while accounting for sources of natural climate variation. Here we demonstrate the utility of a marine-based habitat model parameterized using citizen science data and remotely sensed environmental covariates for quantifying shifts in oceanographic habitat suitability over 22 years for a coastal-pelagic fish species in a climate change hotspot. Our analyses account for the effects of natural intra- and interannual climate variability to reveal rapid poleward shifts in core (94.4 km/decade) and poleward edge (108.8 km/decade) oceanographic habitats. Temporal persistence of suitable oceanographic habitat at high latitudes also increased by approximately 3 months over the study period. Our approach demonstrates how marine citizen science data can be used to quantify range shifts, but necessitates shifting focus from species distributions directly, to the distribution of species' environmental habitat preferences.
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Affiliation(s)
- Curtis Champion
- Institute for Marine and Antarctic Studies, Hobart, Tasmania, Australia
- CSIRO Oceans and Atmosphere, Hobart, Tasmania, Australia
| | - Alistair J Hobday
- CSIRO Oceans and Atmosphere, Hobart, Tasmania, Australia
- Centre for Marine Socioecology, Hobart, Tasmania, Australia
| | - Sean R Tracey
- Institute for Marine and Antarctic Studies, Hobart, Tasmania, Australia
| | - Gretta T Pecl
- Institute for Marine and Antarctic Studies, Hobart, Tasmania, Australia
- Centre for Marine Socioecology, Hobart, Tasmania, Australia
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17
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De Jonckheere J, Garabedian C, Charlier P, Champion C, Servan-Schreiber E, Storme L, Debarge V, Jeanne M, Logier R. Influence of ECG sampling rate in fetal heart rate variability analysis. Annu Int Conf IEEE Eng Med Biol Soc 2017; 2017:2027-2030. [PMID: 29060294 DOI: 10.1109/embc.2017.8037250] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Fetal hypoxia results in a fetal blood acidosis (pH<;7.10). In such a situation, the fetus develops several adaptation mechanisms regulated by the autonomic nervous system. Many studies demonstrated significant changes in heart rate variability in hypoxic fetuses. So, fetal heart rate variability analysis could be of precious help for fetal hypoxia prediction. Commonly used fetal heart rate variability analysis methods have been shown to be sensitive to the ECG signal sampling rate. Indeed, a low sampling rate could induce variability in the heart beat detection which will alter the heart rate variability estimation. In this paper, we introduce an original fetal heart rate variability analysis method. We hypothesize that this method will be less sensitive to ECG sampling frequency changes than common heart rate variability analysis methods. We then compared the results of this new heart rate variability analysis method with two different sampling frequencies (250-1000 Hz).
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18
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Fayard B, Touati A, Sage E, Abel F, Champion C, Chetoui A. Single- and double-strand breaks induced in plasmid DNA irradiated by ultra-soft X-rays. ACTA ACUST UNITED AC 2017. [DOI: 10.1051/jcp:1999123] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
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19
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Garabedian C, Champion C, Servan-Schreiber E, Butruille L, Aubry E, Sharma D, Logier R, Deruelle P, Storme L, Houfflin-Debarge V, De Jonckheere J. A new analysis of heart rate variability in the assessment of fetal parasympathetic activity: An experimental study in a fetal sheep model. PLoS One 2017; 12:e0180653. [PMID: 28700617 PMCID: PMC5503275 DOI: 10.1371/journal.pone.0180653] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2017] [Accepted: 06/19/2017] [Indexed: 11/18/2022] Open
Abstract
Analysis of heart rate variability (HRV) is a recognized tool in the assessment of autonomic nervous system (ANS) activity. Indeed, both time and spectral analysis techniques enable us to obtain indexes that are related to the way the ANS regulates the heart rate. However, these techniques are limited in terms of the lack of thresholds of the numerical indexes, which is primarily due to high inter-subject variability. We proposed a new fetal HRV analysis method related to the parasympathetic activity of the ANS. The aim of this study was to evaluate the performance of our method compared to commonly used HRV analysis, with regard to i) the ability to detect changes in ANS activity and ii) inter-subject variability. This study was performed in seven sheep fetuses. In order to evaluate the sensitivity and specificity of our index in evaluating parasympathetic activity, we directly administered 2.5 mg intravenous atropine, to inhibit parasympathetic tone, and 5 mg propranolol to block sympathetic activity. Our index, as well as time analysis (root mean square of the successive differences; RMSSD) and spectral analysis (high frequency (HF) and low frequency (LF) spectral components obtained via fast Fourier transform), were measured before and after injection. Inter-subject variability was estimated by the coefficient of variance (%CV). In order to evaluate the ability of HRV parameters to detect fetal parasympathetic decrease, we also estimated the effect size for each HRV parameter before and after injections. As expected, our index, the HF spectral component, and the RMSSD were reduced after the atropine injection. Moreover, our index presented a higher effect size. The %CV was far lower for our index than for RMSSD, HF, and LF. Although LF decreased after propranolol administration, fetal stress index, RMSSD, and HF were not significantly different, confirming the fact that those indexes are specific to the parasympathetic nervous system. In conclusion, our method appeared to be effective in detecting parasympathetic inhibition. Moreover, inter-subject variability was much lower, and effect size higher, with our method compared to other HRV analysis methods.
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Affiliation(s)
- C. Garabedian
- Univ. Lille, EA 4489 – Perinatal Environment and Health, Lille, France
- CHU Lille, Department of Obstetrics, Lille, France
- * E-mail:
| | - C. Champion
- Univ. Lille, EA 4489 – Perinatal Environment and Health, Lille, France
- CHU Lille, Department of Pediatric Surgery, Lille, France
| | - E. Servan-Schreiber
- Univ. Lille, EA 4489 – Perinatal Environment and Health, Lille, France
- CHU Lille, Department of Obstetrics, Lille, France
| | - L. Butruille
- Univ. Lille, EA 4489 – Perinatal Environment and Health, Lille, France
| | - E. Aubry
- Univ. Lille, EA 4489 – Perinatal Environment and Health, Lille, France
- CHU Lille, Department of Pediatric Surgery, Lille, France
| | - D. Sharma
- Univ. Lille, EA 4489 – Perinatal Environment and Health, Lille, France
- CHU Lille, Department of Pediatric Surgery, Lille, France
| | - R. Logier
- CHU Lille, CIC-IT 1403, MRRC, Lille, France
| | - P. Deruelle
- Univ. Lille, EA 4489 – Perinatal Environment and Health, Lille, France
- CHU Lille, Department of Obstetrics, Lille, France
| | - L. Storme
- Univ. Lille, EA 4489 – Perinatal Environment and Health, Lille, France
- CHU Lille, Department of Neonatology, Lille, France
| | - V. Houfflin-Debarge
- Univ. Lille, EA 4489 – Perinatal Environment and Health, Lille, France
- CHU Lille, Department of Obstetrics, Lille, France
| | - J. De Jonckheere
- Univ. Lille, EA 4489 – Perinatal Environment and Health, Lille, France
- CHU Lille, CIC-IT 1403, MRRC, Lille, France
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20
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Bonebrake TC, Brown CJ, Bell JD, Blanchard JL, Chauvenet A, Champion C, Chen IC, Clark TD, Colwell RK, Danielsen F, Dell AI, Donelson JM, Evengård B, Ferrier S, Frusher S, Garcia RA, Griffis RB, Hobday AJ, Jarzyna MA, Lee E, Lenoir J, Linnetved H, Martin VY, McCormack PC, McDonald J, McDonald-Madden E, Mitchell N, Mustonen T, Pandolfi JM, Pettorelli N, Possingham H, Pulsifer P, Reynolds M, Scheffers BR, Sorte CJB, Strugnell JM, Tuanmu MN, Twiname S, Vergés A, Villanueva C, Wapstra E, Wernberg T, Pecl GT. Managing consequences of climate-driven species redistribution requires integration of ecology, conservation and social science. Biol Rev Camb Philos Soc 2017; 93:284-305. [PMID: 28568902 DOI: 10.1111/brv.12344] [Citation(s) in RCA: 106] [Impact Index Per Article: 15.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2016] [Revised: 05/03/2017] [Accepted: 05/05/2017] [Indexed: 12/23/2022]
Abstract
Climate change is driving a pervasive global redistribution of the planet's species. Species redistribution poses new questions for the study of ecosystems, conservation science and human societies that require a coordinated and integrated approach. Here we review recent progress, key gaps and strategic directions in this nascent research area, emphasising emerging themes in species redistribution biology, the importance of understanding underlying drivers and the need to anticipate novel outcomes of changes in species ranges. We highlight that species redistribution has manifest implications across multiple temporal and spatial scales and from genes to ecosystems. Understanding range shifts from ecological, physiological, genetic and biogeographical perspectives is essential for informing changing paradigms in conservation science and for designing conservation strategies that incorporate changing population connectivity and advance adaptation to climate change. Species redistributions present challenges for human well-being, environmental management and sustainable development. By synthesising recent approaches, theories and tools, our review establishes an interdisciplinary foundation for the development of future research on species redistribution. Specifically, we demonstrate how ecological, conservation and social research on species redistribution can best be achieved by working across disciplinary boundaries to develop and implement solutions to climate change challenges. Future studies should therefore integrate existing and complementary scientific frameworks while incorporating social science and human-centred approaches. Finally, we emphasise that the best science will not be useful unless more scientists engage with managers, policy makers and the public to develop responsible and socially acceptable options for the global challenges arising from species redistributions.
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Affiliation(s)
- Timothy C Bonebrake
- School of Biological Sciences, The University of Hong Kong, Hong Kong SAR, 999077, China
| | | | - Johann D Bell
- Australian National Centre for Ocean Resources and Security, University of Wollongong, Wollongong, NSW 2522, Australia.,Conservation International, Arlington, VA, 22202, U.S.A
| | - Julia L Blanchard
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS 7001, Australia.,Centre for Marine Socioecology, University of Tasmania, Hobart, TAS 7001, Australia
| | - Alienor Chauvenet
- Centre for Biodiversity and Conservation Science, University of Queensland, St Lucia, 4072, Australia.,ARC Centre of Excellence for Environmental Decisions, School of Biological Sciences, The University of Queensland, Brisbane, 4072, Australia
| | - Curtis Champion
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS 7001, Australia
| | - I-Ching Chen
- Department of Life Sciences, National Cheng Kung University, Tainan, 701, Republic of China
| | - Timothy D Clark
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS 7001, Australia.,CSIRO Agriculture and Food, Hobart, 7000, Australia
| | - Robert K Colwell
- Center for Macroecology, Evolution and Climate, University of Copenhagen, Natural History Museum of Denmark, 2100, Copenhagen, Denmark.,Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, 06269, U.S.A.,University of Colorado Museum of Natural History, Boulder, CO, 80309, U.S.A.,Departmento de Ecologia, Universidade Federal de Goiás, CP 131, 74.001-970, Goiânia, Brazil
| | - Finn Danielsen
- Nordic Foundation for Development and Ecology (NORDECO), Copenhagen, DK-1159, Denmark
| | - Anthony I Dell
- National Great Rivers Research and Education Center (NGRREC), East Alton, IL, 62024, U.S.A.,Department of Biology, Washington University in St. Louis, St. Louis, MO, 631303, USA
| | - Jennifer M Donelson
- School of Life Sciences, University of Technology, Sydney, 2007, Australia.,ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, 4811, Australia
| | - Birgitta Evengård
- Division of Infectious Diseases, Department of Clinical Microbiology, Umea University, 90187, Umea, Sweden
| | | | - Stewart Frusher
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS 7001, Australia.,Centre for Marine Socioecology, University of Tasmania, Hobart, TAS 7001, Australia
| | - Raquel A Garcia
- Department of Statistical Sciences, Centre for Statistics in Ecology, the Environment and Conservation, University of Cape Town, Rondebosch, 7701, South Africa.,Faculty of Science, Department of Botany and Zoology, Centre for Invasion Biology, Stellenbosch University, Matieland, 7602, South Africa
| | - Roger B Griffis
- NOAA National Marine Fisheries Service, Office of Science and Technology, Silver Spring, MD, 20910, U.S.A
| | - Alistair J Hobday
- Centre for Marine Socioecology, University of Tasmania, Hobart, TAS 7001, Australia.,CSIRO, Oceans and Atmosphere, Hobart, 7000, Australia
| | - Marta A Jarzyna
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06511, U.S.A
| | - Emma Lee
- Centre for Marine Socioecology, University of Tasmania, Hobart, TAS 7001, Australia
| | - Jonathan Lenoir
- UR « Ecologie et dynamique des systèmes anthropisés » (EDYSAN, FRE 3498 CNRS-UPJV), Université de Picardie Jules Verne, FR-80037, Amiens Cedex 1, France
| | - Hlif Linnetved
- Faculty of Science, Institute of Food and Resource Economics, University of Copenhagen, DK-1958, Frederiksberg C, Denmark
| | - Victoria Y Martin
- Cornell Lab of Ornithology, Cornell University, Ithaca, NY, 14850, U.S.A
| | | | - Jan McDonald
- Centre for Marine Socioecology, University of Tasmania, Hobart, TAS 7001, Australia.,Faculty of Law, University of Tasmania, Hobart, 7001, Australia
| | - Eve McDonald-Madden
- ARC Centre of Excellence for Environmental Decisions, School of Biological Sciences, The University of Queensland, Brisbane, 4072, Australia.,School of Geography, Planning and Environmental Management, The University of Queensland, Brisbane, 4072, Australia
| | - Nicola Mitchell
- School of Biological Sciences, University of Western Australia, Crawley, 6009, Australia
| | - Tero Mustonen
- Snowchange Cooperative, University of Eastern Finland, 80130, Joensuu, Finland
| | - John M Pandolfi
- School of Biological Sciences, ARC Centre of Excellence for Coral Reef Studies, The University of Queensland, Brisbane, 4072, Australia
| | | | - Hugh Possingham
- ARC Centre of Excellence for Environmental Decisions, School of Biological Sciences, The University of Queensland, Brisbane, 4072, Australia.,Grand Challenges in Ecosystems and the Environment, Silwood Park, Imperial College, London, SW7 2AZ, UK
| | - Peter Pulsifer
- National Snow and Ice Data Center, University of Colorado Boulder, Boulder, CO, 80309, U.S.A
| | - Mark Reynolds
- The Nature Conservancy, San Francisco, CA, 94105, U.S.A
| | - Brett R Scheffers
- Department of Wildlife Ecology and Conservation, University of Florida/IFAS, Gainesville, FL, 32611, U.S.A
| | - Cascade J B Sorte
- Department of Ecology and Evolutionary Biology, University of California, Irvine, CA, 92697, U.S.A
| | - Jan M Strugnell
- Centre for Sustainable Tropical Fisheries and Aquaculture, College of Science and Engineering, James Cook University, Townsville, 4811, Australia
| | - Mao-Ning Tuanmu
- Biodiversity Research Center, Academia Sinica, Taipei, 115, Republic of China
| | - Samantha Twiname
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS 7001, Australia
| | - Adriana Vergés
- Centre for Marine Bio-Innovation and Evolution & Ecology Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, 2052, Australia
| | - Cecilia Villanueva
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS 7001, Australia
| | - Erik Wapstra
- School of Biological Sciences, University of Tasmania, Tasmania, 7001, Australia
| | - Thomas Wernberg
- School of Biological Sciences, University of Western Australia, Crawley, 6009, Australia.,UWA Oceans Institute, University of Western Australia, Perth, 6009, Australia
| | - Gretta T Pecl
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS 7001, Australia.,Centre for Marine Socioecology, University of Tasmania, Hobart, TAS 7001, Australia
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Kribaa B, Rouabah Z, Loirec CL, Champion C, Bouarissa N. Positron backscattering from solid targets: Modeling of scattering processes via various approaches. Micron 2016; 87:46-50. [DOI: 10.1016/j.micron.2016.04.009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2016] [Revised: 04/29/2016] [Accepted: 04/29/2016] [Indexed: 11/29/2022]
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Champion C, Quinto MA, Monti JM, Galassi ME, Weck PF, Fojón OA, Hanssen J, Rivarola RD. Erratum: Water versus DNA: new insights into proton track-structure modelling in radiobiology and radiotherapy ( Phys. Med. Biol. 607805). Phys Med Biol 2016. [DOI: 10.1088/0031-9155/61/3/1403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Francis Z, Seif E, Incerti S, Champion C, Karamitros M, Bernal MA, Ivanchenko VN, Mantero A, Tran HN, El Bitar Z. Carbon ion fragmentation effects on the nanometric level behind the Bragg peak depth. Phys Med Biol 2016; 59:7691-702. [PMID: 25415376 DOI: 10.1088/0031-9155/59/24/7691] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
In this study, fragmentation yields of carbon therapy beams are estimated using the Geant4 simulation toolkit version 9.5. Simulations are carried out in a step-by-step mode using the Geant4-DNA processes for each of the major contributing fragments. The energy of the initial beam is taken 400 MeV amu(-1) as this is the highest energy, which is used for medical accelerators and this would show the integral role of secondary contributions in radiotherapy irradiations. The obtained results showed that 64% of the global dose deposition is initiated by carbon ions, while up to 36% is initiated by the produced fragments including all their isotopes. The energy deposition clustering yields of each of the simulated fragments are then estimated using the DBSCAN clustering algorithm and they are compared to the yields of the incident primary beam.
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Affiliation(s)
- Z Francis
- Faculty of Sciences, Department of Physics, Université Saint Joseph, Beirut, Lebanon
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Champion C, Glenn N, Berry T, Spence JC. Exploring women's responses to online media coverage of weight loss surgery. Clin Obes 2015; 5:281-7. [PMID: 26278398 DOI: 10.1111/cob.12110] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/09/2015] [Revised: 06/25/2015] [Accepted: 07/01/2015] [Indexed: 01/06/2023]
Abstract
The purpose of this study was to understand the reactions of women to online news articles about weight loss surgery and related reader comments. Focus groups were conducted; open-ended questions were asked to elicit responses to existing online news media content related to weight loss surgery. The participants described the online articles as predominantly supportive of weight loss surgery and in response they expressed a desire to see more critical content, including different and competing perspectives. Participants felt the online comments represented extreme perspectives and were predominately negative. These were therefore not viewed as helpful or informative. Nevertheless, readers viewed comments as a form of entertainment. Because of the aggressive and anonymous nature of reader comments in response to online news stories, the participants did not feel comfortable leaving comments themselves on the news sites. Findings highlight the importance of gathering readers' perspectives in response to interactive media content and, in particular, health information.
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Affiliation(s)
- C Champion
- Faculty of Physical Education and Recreation, University of Alberta, Edmonton, Alberta, Canada
| | - N Glenn
- School of Public Health, University of Montreal, Montreal, Quebec, Canada
| | - T Berry
- Faculty of Physical Education and Recreation, University of Alberta, Edmonton, Alberta, Canada
| | - J C Spence
- Faculty of Physical Education and Recreation, University of Alberta, Edmonton, Alberta, Canada
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Champion C, Quinto MA, Monti JM, Galassi ME, Weck PF, Fojón OA, Hanssen J, Rivarola RD. Water versus DNA: new insights into proton track-structure modelling in radiobiology and radiotherapy. Phys Med Biol 2015; 60:7805-28. [PMID: 26406277 DOI: 10.1088/0031-9155/60/20/7805] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Water is a common surrogate of DNA for modelling the charged particle-induced ionizing processes in living tissue exposed to radiations. The present study aims at scrutinizing the validity of this approximation and then revealing new insights into proton-induced energy transfers by a comparative analysis between water and realistic biological medium. In this context, a self-consistent quantum mechanical modelling of the ionization and electron capture processes is reported within the continuum distorted wave-eikonal initial state framework for both isolated water molecules and DNA components impacted by proton beams. Their respective probability of occurrence-expressed in terms of total cross sections-as well as their energetic signature (potential and kinetic) are assessed in order to clearly emphasize the differences existing between realistic building blocks of living matter and the controverted water-medium surrogate. Consequences in radiobiology and radiotherapy will be discussed in particular in view of treatment planning refinement aiming at better radiotherapy strategies.
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Affiliation(s)
- C Champion
- Université de Bordeaux, CNRS/IN2P3, Centre d'Etudes Nucléaires de Bordeaux Gradignan, Gradignan, France
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Quinto MA, Monti JM, Week PF, Fojón OA, Hanssen J, Rivarola RD, Champion C. TILDA-V: A full-differential code for proton tracking in biological matter. ACTA ACUST UNITED AC 2015. [DOI: 10.1088/1742-6596/635/3/032063] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Abstract
In addition to conventional short-lived radionuclides, longer-lived isotopes are becoming increasingly important to positron emission tomography (PET). The longer half-life both allows for circumvention of the in-house production of radionuclides, and expands the spectrum of physiological processes amenable to PET imaging, including processes with prohibitively slow kinetics for investigation with short-lived radiotracers. However, many of these radionuclides emit 'high-energy' positrons and gamma rays which affect the spatial resolution and quantitative accuracy of PET images. The objective of the present work is to investigate the positron range distribution for some of these long-lived isotopes. Based on existing Monte Carlo simulations of positron interactions in water, the probability distribution of the line of response displacement have been empirically described by means of analytic displacement functions. Relevant distributions have been derived for the isotopes (22)Na, (52)Mn, (89)Zr, (45)Ti, (51)Mn, (94 m)Tc, (52 m)Mn, (38)K, (64)Cu, (86)Y, (124)I, and (120)I. It was found that the distribution functions previously found for a series of conventional isotopes (Jødal et al 2012 Phys. Med. Bio. 57 3931-43), were also applicable to these non-conventional isotopes, except that for (120)I, (124)I, (89)Zr, (52)Mn, and (64)Cu, parameters in the formulae were less well predicted by mean positron energy alone. Both conventional and non-conventional range distributions can be described by relatively simple analytic expressions. The results will be applicable to image-reconstruction software to improve the resolution.
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Affiliation(s)
- L Jødal
- Department of Nuclear Medicine, Aalborg University Hospital, Aalborg, Denmark
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Monti J, Tachino C, Hanssen J, Fojón O, Galassi M, Champion C, Rivarola R. Distorted wave calculations for electron loss process induced by bare ion impact on biological targets. Appl Radiat Isot 2014; 83 Pt B:105-8. [DOI: 10.1016/j.apradiso.2012.12.016] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2012] [Revised: 12/26/2012] [Accepted: 12/27/2012] [Indexed: 10/27/2022]
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Champion C, Incerti S, Perrot Y, Delorme R, Bordage MC, Bardiès M, Mascialino B, Tran HN, Ivanchenko V, Bernal M, Francis Z, Groetz JE, Fromm M, Campos L. Dose point kernels in liquid water: an intra-comparison between GEANT4-DNA and a variety of Monte Carlo codes. Appl Radiat Isot 2013; 83 Pt B:137-41. [PMID: 23478094 DOI: 10.1016/j.apradiso.2013.01.037] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2012] [Revised: 01/28/2013] [Accepted: 01/31/2013] [Indexed: 10/27/2022]
Abstract
Modeling the radio-induced effects in biological medium still requires accurate physics models to describe the interactions induced by all the charged particles present in the irradiated medium in detail. These interactions include inelastic as well as elastic processes. To check the accuracy of the very low energy models recently implemented into the GEANT4 toolkit for modeling the electron slowing-down in liquid water, the simulation of electron dose point kernels remains the preferential test. In this context, we here report normalized radial dose profiles, for mono-energetic point sources, computed in liquid water by using the very low energy "GEANT4-DNA" physics processes available in the GEANT4 toolkit. In the present study, we report an extensive intra-comparison of profiles obtained by a large selection of existing and well-documented Monte-Carlo codes, namely, EGSnrc, PENELOPE, CPA100, FLUKA and MCNPX.
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Affiliation(s)
- C Champion
- Université Bordeaux 1, CNRS/IN2P3, Centre d'Etudes Nucléaires de Bordeaux Gradignan, CENBG, Chemin du Solarium, BP120, 33175 Gradignan, France.
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31
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Allison J, Apostolakis J, Bagulya A, Champion C, Elles S, Garay F, Grichine V, Howard A, Incerti S, Ivanchenko V, Jacquemier J, Maire M, Mantero A, Nieminen P, Pandola L, Santin G, Sawkey D, Schälicke A, Urban L. Geant4 electromagnetic physics for high statistic simulation of LHC experiments. ACTA ACUST UNITED AC 2012. [DOI: 10.1088/1742-6596/396/2/022013] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Abstract
Positron range impairs resolution in PET imaging, especially for high-energy emitters and for small-animal PET. De-blurring in image reconstruction is possible if the blurring distribution is known. Furthermore, the percentage of annihilation events within a given distance from the point of positron emission is relevant for assessing statistical noise. This paper aims to determine the positron range distribution relevant for blurring for seven medically relevant PET isotopes, (18)F, (11)C, (13)N, (15)O, (68)Ga, (62)Cu and (82)Rb, and derive empirical formulas for the distributions. This paper focuses on allowed-decay isotopes. It is argued that blurring at the detection level should not be described by the positron range r, but instead the 2D projected distance δ (equal to the closest distance between decay and line of response). To determine these 2D distributions, results from a dedicated positron track-structure Monte Carlo code, Electron and POsitron TRANsport (EPOTRAN), were used. Materials other than water were studied with PENELOPE. The radial cumulative probability distribution G(2D)(δ) and the radial probability density distribution g(2D)(δ) were determined. G(2D)(δ) could be approximated by the empirical function 1 - exp(-Aδ(2) - Bδ), where A = 0.0266 (E(mean))(-1.716) and B = 0.1119 (E(mean))(-1.934), with E(mean) being the mean positron energy in MeV and δ in mm. The radial density distribution g(2D)(δ) could be approximated by differentiation of G(2D)(δ). Distributions in other media were very similar to water. The positron range is important for improved resolution in PET imaging. Relevant distributions for the positron range have been derived for seven isotopes. Distributions for other allowed-decay isotopes may be estimated with the above formulas.
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Affiliation(s)
- L Jødal
- Department of Nuclear Medicine, Aalborg University Hospital, Denmark.
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Champion C, Weck PF, Lekadir H, Galassi ME, Fojón OA, Abufager P, Rivarola RD, Hanssen J. Proton-induced single electron capture on DNA/RNA bases. Phys Med Biol 2012; 57:3039-49. [DOI: 10.1088/0031-9155/57/10/3039] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Galassi ME, Champion C, Weck PF, Rivarola RD, Fojón O, Hanssen J. Quantum-mechanical predictions of DNA and RNA ionization by energetic proton beams. Phys Med Biol 2012; 57:2081-99. [DOI: 10.1088/0031-9155/57/7/2081] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Delorme R, Agelou M, Champion C, Elleaume H, Taupin F, Flaender M, Ravanat J. 224 MODELING AND EXPERIMENTAL VALIDATION OF THE RADIATION – HEAVY ELEMENTS INTERACTIONS AT THE MICROMETER LEVEL IN PHOTON ACTIVATION RADIOTHERAPY. Radiother Oncol 2012. [DOI: 10.1016/s0167-8140(12)70193-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Francis Z, Incerti S, Ivanchenko V, Champion C, Karamitros M, Bernal MA, Bitar ZE. Monte Carlo simulation of energy-deposit clustering for ions of the same LET in liquid water. Phys Med Biol 2011; 57:209-24. [DOI: 10.1088/0031-9155/57/1/209] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Bernal MA, deAlmeida CE, Sampaio C, Incerti S, Champion C, Nieminen P. The invariance of the total direct DNA strand break yield. Med Phys 2011; 38:4147-53. [DOI: 10.1118/1.3597568] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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38
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Incerti S, Ivanchenko A, Karamitros M, Mantero A, Moretto P, Tran HN, Mascialino B, Champion C, Ivanchenko VN, Bernal MA, Francis Z, Villagrasa C, Baldacchin G, Guèye P, Capra R, Nieminen P, Zacharatou C. Comparison of GEANT4 very low energy cross section models with experimental data in water. Med Phys 2010; 37:4692-708. [PMID: 20964188 DOI: 10.1118/1.3476457] [Citation(s) in RCA: 275] [Impact Index Per Article: 19.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
PURPOSE The GEANT4 general-purpose Monte Carlo simulation toolkit is able to simulate physical interaction processes of electrons, hydrogen and helium atoms with charge states (H0, H+) and (He0, He+, He2+), respectively, in liquid water, the main component of biological systems, down to the electron volt regime and the submicrometer scale, providing GEANT4 users with the so-called "GEANT4-DNA" physics models suitable for microdosimetry simulation applications. The corresponding software has been recently re-engineered in order to provide GEANT4 users with a coherent and unique approach to the simulation of electromagnetic interactions within the GEANT4 toolkit framework (since GEANT4 version 9.3 beta). This work presents a quantitative comparison of these physics models with a collection of experimental data in water collected from the literature. METHODS An evaluation of the closeness between the total and differential cross section models available in the GEANT4 toolkit for microdosimetry and experimental reference data is performed using a dedicated statistical toolkit that includes the Kolmogorov-Smirnov statistical test. The authors used experimental data acquired in water vapor as direct measurements in the liquid phase are not yet available in the literature. Comparisons with several recommendations are also presented. RESULTS The authors have assessed the compatibility of experimental data with GEANT4 microdosimetry models by means of quantitative methods. The results show that microdosimetric measurements in liquid water are necessary to assess quantitatively the validity of the software implementation for the liquid water phase. Nevertheless, a comparison with existing experimental data in water vapor provides a qualitative appreciation of the plausibility of the simulation models. The existing reference data themselves should undergo a critical interpretation and selection, as some of the series exhibit significant deviations from each other. CONCLUSIONS The GEANT4-DNA physics models available in the GEANT4 toolkit have been compared in this article to available experimental data in the water vapor phase as well as to several published recommendations on the mass stopping power. These models represent a first step in the extension of the GEANT4 Monte Carlo toolkit to the simulation of biological effects of ionizing radiation.
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Affiliation(s)
- S Incerti
- Université Bordeaux 1, CNRS/IN2P3, Centre d'Etudes Nucléaires de Bordeaux-Gradignan, CENBG, Chemin du Solarium, BP 120, 33175 Gradignan, France.
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Champion C, Lekadir H, Galassi ME, Fojón O, Rivarola RD, Hanssen J. Theoretical predictions for ionization cross sections of DNA nucleobases impacted by light ions. Phys Med Biol 2010; 55:6053-67. [DOI: 10.1088/0031-9155/55/20/002] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Champion C, Incerti S, Aouchiche H, Oubaziz D. A free-parameter theoretical model for describing the electron elastic scattering in water in the Geant4 toolkit. Radiat Phys Chem Oxf Engl 1993 2009. [DOI: 10.1016/j.radphyschem.2009.03.079] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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42
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Hindié E, Champion C, Zanotti-Fregonara P, Rubello D, Moretti JL. Reply to: Determinants of (131)I radiation dose to thyroid follicular cells. Eur J Nucl Med Mol Imaging 2009; 36:1015-6. [PMID: 19399498 DOI: 10.1007/s00259-009-1144-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Aouchiche H, Champion C, Oubaziz D. Electron and positron elastic scattering in gaseous and liquid water: A comparative study. Radiat Phys Chem Oxf Engl 1993 2008. [DOI: 10.1016/j.radphyschem.2007.09.004] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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45
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Abbas I, Champion C, Zarour B, Lasri B, Hanssen J. Single and multiple cross sections for ionizing processes of biological molecules by protons and α-particle impact: a classical Monte Carlo approach. Phys Med Biol 2008; 53:N41-51. [DOI: 10.1088/0031-9155/53/4/n03] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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46
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Elbast M, Wu TD, Guiraud-Vitaux F, Guerquin-Kern JL, Petiet A, Hindie E, Champion C, Croisy A, Colas-Linhart N. Kinetics of intracolloidal iodine in thyroid of iodine-deficient or equilibrated newborn rats. Direct imaging using secondary ion mass spectrometry. Cell Mol Biol (Noisy-le-grand) 2007; 53 Suppl:OL1018-OL1024. [PMID: 18184480] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2007] [Accepted: 11/11/2007] [Indexed: 05/25/2023]
Abstract
The most significant impact of the Chernobyl accident is the increased incidence of thyroid cancers among children. In order to accurately estimate the radiation dose provided by radioiodines, it is important to examine how the distribution of newly incorporated iodine varies with time and if this distribution varies according to the iodine status. The kinetic distribution of intra colloidal newly organified iodine in the rat immature thyroid was recorded and analysed using the ionic nanoprobe NanoSims50. Our observations imply that in case of radioiodine contamination, the energy deposits vary (i) with time, (ii) from one follicle to another, and (iii) from one cell to another inside the same follicle regardless the iodine status. The kinetic heterogeneity of iodine distribution must be take in account in thyroid dose evaluation.
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Affiliation(s)
- M Elbast
- Biophysique, UFR de Médecine, Site Xavier Bichat, Paris, France
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Champion C, Le Loirec C. Positron follow-up in liquid water: II. Spatial and energetic study for the most important radioisotopes used in PET. Phys Med Biol 2007; 52:6605-25. [DOI: 10.1088/0031-9155/52/22/004] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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48
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Hafied H, Eschenbrenner A, Champion C, Ruiz-López M, Cappello CD, Charpentier I, Hervieux PA. Electron momentum spectroscopy of the valence orbitals of the water molecule in gas and liquid phase: A comparative study. Chem Phys Lett 2007. [DOI: 10.1016/j.cplett.2007.03.067] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Abstract
When biological matter is irradiated by charged particles, a wide variety of interactions occur, which lead to a deep modification of the cellular environment. To understand the fine structure of the microscopic distribution of energy deposits, Monte Carlo event-by-event simulations are particularly suitable. However, the development of these track-structure codes needs accurate interaction cross sections for all the electronic processes: ionization, excitation, positronium formation and even elastic scattering. Under these conditions, we have recently developed a Monte Carlo code for positrons in water, the latter being commonly used to simulate the biological medium. All the processes are studied in detail via theoretical differential and total cross-section calculations performed by using partial wave methods. Comparisons with existing theoretical and experimental data in terms of stopping powers, mean energy transfers and ranges show very good agreements. Moreover, thanks to the theoretical description of positronium formation, we have access, for the first time, to the complete kinematics of the electron capture process. Then, the present Monte Carlo code is able to describe the detailed positronium history, which will provide useful information for medical imaging (like positron emission tomography) where improvements are needed to define with the best accuracy the tumoural volumes.
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Affiliation(s)
- C Champion
- Laboratoire de Physique Moléculaire et des Collisions, Université Paul Verlaine-Metz, 1 boulevard Arago, Technopôle 2000, 57078 Metz, France.
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Champion C, L'hoir A, Politis MF, Fainstein PD, Rivarola RD, Chetioui A. A Monte Carlo Code for the Simulation of Heavy-Ion Tracks in Water. Radiat Res 2005; 163:222-31. [PMID: 15658899 DOI: 10.1667/rr3295] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
TILDA, a new Monte Carlo track structure code for ions in gaseous water that is valid for both high-LET (approximately 10(4) keV/microm) and low-LET ions, is presented. It is specially designed for a comparison of the patterns of energy deposited by a large range of ions. Low-LET ions are described in a perturbative frame, whereas heavy ions with a very high stopping power are treated using the Lindhard local density approximation and the Russek and Meli statistical method. Ionization cross sections singly differential with energy compare well with the experiment. As an illustration of the non-perturbative interaction of high-LET ions, a comparison between the ion tracks of light and heavy ions with the same specific energy is presented (1.4 MeV/nucleon helium and uranium ions). The mean energy for ejected electrons was found to be approximately four times larger for uranium than for helium, leading to a much larger track radius in the first case. For electrons, except for the excitation cross sections that are deduced from experimental fits, cross sections are derived analytically. For any orientation of the target molecule, the code calculates multiple differential cross sections as a function of the ejection and scattering angles and of the energy transfer. The corresponding singly differential and total ionization cross sections are in good agreement with experimental data. The angular distribution of secondary electrons is shown to depend strongly on the orientation of the water molecule.
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Affiliation(s)
- C Champion
- Laboratoire de Physique Moléculaire et des Collisions, Université de Metz, Technopôle, 57070 Metz, France
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