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Lupton SJ, Pfaff C, Singh A, Chakrabarty S, Hakk H. Bioavailability of non-aromatic brominated flame retardants in rats from dust and oil vehicles. Environ Res 2023; 218:114853. [PMID: 36403649 DOI: 10.1016/j.envres.2022.114853] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Revised: 11/15/2022] [Accepted: 11/16/2022] [Indexed: 06/16/2023]
Abstract
Hexabromocyclododecane (HBCD) is a brominated flame retardant (BFR) labeled by the Stockholm Convention as a persistent organic pollutant (POP) and exists primarily as three stereoisomers, i.e. α-, β-, and γ. One of the major routes of human exposure to HBCD is dust found in homes, offices, and cars and dust may be the most important route of HBCD exposure in young children. A study was conducted to determine the oral bioavailability of HBCD from household dust in rats over a 21-d feeding period relative to HBCD bioavailability from a corn oil matrix. Twenty-four hours after the last exposure, rats were sacrificed, and various tissues were collected. HBCD diastereomers were detected in adipose, blood, and liver of both dose groups, suggesting HBCD is bioavailable from both oil and dust. β-HBCD concentrations were below the limit of detection in all tissues, but α-HBCD was detected in the brain of oil-dose rats and in adipose and liver of both dose groups. γ-HBCD was the dominant diastereomer in adipose, blood, and liver samples regardless of dosing matrix. Except for γ-HBCD in muscle of the oil-dosed group, muscle did not contain measurable HBCDs. Adipose tissue accumulated HBCD to a greater extent than muscle or liver, having bioaccumulation factors greater than 1.
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Affiliation(s)
- Sara J Lupton
- USDA-ARS Edward T. Schafer Agricultural Research Center, 1616 Albrecht Blvd N, Fargo, ND, 58102, USA.
| | - Colleen Pfaff
- USDA-ARS Edward T. Schafer Agricultural Research Center, 1616 Albrecht Blvd N, Fargo, ND, 58102, USA
| | - Anuradha Singh
- USDA-ARS Edward T. Schafer Agricultural Research Center, 1616 Albrecht Blvd N, Fargo, ND, 58102, USA
| | - Shubhashis Chakrabarty
- USDA-ARS Edward T. Schafer Agricultural Research Center, 1616 Albrecht Blvd N, Fargo, ND, 58102, USA
| | - Heldur Hakk
- USDA-ARS Edward T. Schafer Agricultural Research Center, 1616 Albrecht Blvd N, Fargo, ND, 58102, USA
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2
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Chakrabarty S, Serum EM, Winders TM, Neville B, Kleinhenz MD, Magnin G, Coetzee JF, Dahlen CR, Swanson KC, Smith DJ. Rapid quantification of cannabinoids in beef tissues and bodily fluids using direct-delivery electrospray ionization mass spectrometry. Food Addit Contam Part A Chem Anal Control Expo Risk Assess 2022; 39:1705-1717. [PMID: 35939416 DOI: 10.1080/19440049.2022.2107711] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
Abstract
Hempseed cake is a byproduct of hempseed oil extraction and is potentially a useful source of protein and fiber for use in ruminant diets. However, data are lacking on the appearance and/or clearance of cannabinoids in tissues of animals fed hempseed cake. To this end, a rapid method for quantifying cannabinol (CBN), cannabidiol (CBD), cannabinolic acid (CBNA), cannabidiolic acid (CBDA), cannabigerolic acid (CBGA), cannabichromenic acid (CBCA), cannabidivarin (CBDV), cannabidivarinic acid (CBDVA), tetrahydrocannabinol (THC) and tetrahydrocannabinolic acid (THCA) in cattle tissues, plasma, and urine was developed using rapid screen electrospray ionization mass spectrometry (RS-ESI-MS). Regression coefficients of matrix-matched standard curves ranged from 0.9946 to >0.9999 and analyte recoveries averaged from 90.2 ± 15.5 to 108.7 ± 18.7% across all compounds. Limits of detection and quantification ranged from 0.05 to 2.79 ng · mL-1 and 0.17 to 9.30 ng · mL-1, respectively, while the inter-day relative standard deviation ranged from 5.1 to 15.1%. Rapid screening electrospray ionization mass spectrometry (RS-ESI-MS) returned no false positives for any cannabinoid in plasma, urine, and tissue (liver, skeletal muscle) samples from 6 non-dosed control animals (n = 90 samples; of which 72 samples were plasma or urine and 18 samples were tissues). Across-animal cannabinoid concentrations measured in 32 plasma samples of cattle dosed with ground hemp were quantified by RS-ESI-MS; analytical results correlated well (r2 = 0.963) with independent LC-MS/MS analysis of the same samples.
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Affiliation(s)
- Shubhashis Chakrabarty
- Department of Animal Sciences, North Dakota State University, Fargo, ND, USA.,USDA-Agricultural Research Service, Edward T. Schafer Agricultural Research Center, Biosciences Research Laboratory, Fargo, ND, USA
| | - Eric M Serum
- USDA-Agricultural Research Service, Edward T. Schafer Agricultural Research Center, Biosciences Research Laboratory, Fargo, ND, USA
| | - Thomas M Winders
- Department of Animal Sciences, North Dakota State University, Fargo, ND, USA
| | - Bryan Neville
- USDA-Agricultural Research Service, US Meat Animal Research Center, NE, USA
| | - Michael D Kleinhenz
- Department of Clinical Sciences, School of Veterinary Medicine, Kansas State University, Manhattan, KS, USA
| | - Geraldine Magnin
- Department of Anatomy and Physiology, School of Veterinary Medicine, Kansas State University, Manhattan, KS, USA
| | - Johann F Coetzee
- Department of Anatomy and Physiology, School of Veterinary Medicine, Kansas State University, Manhattan, KS, USA
| | - Carl R Dahlen
- Department of Animal Sciences, North Dakota State University, Fargo, ND, USA
| | - Kendall C Swanson
- Department of Animal Sciences, North Dakota State University, Fargo, ND, USA
| | - David J Smith
- USDA-Agricultural Research Service, Edward T. Schafer Agricultural Research Center, Biosciences Research Laboratory, Fargo, ND, USA
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Kundu M, Chakrabarty S, Bhattacharyya S, Majumdar P. Thermoluminescence glow curve analysis using temperature dependent frequency factor in OTOR model. RADIAT MEAS 2022. [DOI: 10.1016/j.radmeas.2022.106820] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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4
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Tanwar Y, Singh C, Chakrabarty S. Comparison of Serum Uric Acid Levels in Patients with Stable Chronic Obstructive Pulmonary Disease and Patients with Acute Exacerbation. J Assoc Physicians India 2022; 70:11-12. [PMID: 35443457] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
UNLABELLED Purine breakdown produces uric acid (UA) as a by-product. Serum UA levels have been reported to be higher in hypoxic people, including Chronic Obstructive Pulmonary Disease (COPD) patients. Serum UA has been suggested as a marker for impaired oxidative metabolism, and it is also thought to play a role in the prognosis and evaluation of respiratory disorders such as COPD. AIM To compare serum uric acid levels in patients with stable Chronic Obstructive Pulmonary Disease and in patients with acute exacerbation (AE). MATERIAL Study Design: An observational cross sectional comparative study was conducted which included 25 stable COPD patients and 25 patients with AE of COPD, all of them aged more than 40 years. Serum UA levels were measured and compared between the two groups. MATERIAL AND METHODS Patients fulfilling inclusion criteria were included in the study after taking informed written consent. Blood sample was taken in plain vial and sent to Biochemistry lab for serum UA analysis. The analysis of serum UA was done using system reagent on Beckman Coulter AU Analyser. Complete blood count, blood urea, serum creatinine, arterial blood gas and oxygen saturation were also measured. OBSERVATION AND RESULTS The mean serum UA in the Stable group was 6.19 mg/dL and in AE group was 7.45 mg/ dL. There was a statistically significant difference between the 2 groups in terms of serum UA levels with a p value of 0.021 and the mean serum UA level being highest in the AE group. In this study, statistically significant difference was also found between Stable and AE group in terms of mMRC grading of dyspnea (p< 0.001), Pack years (p< 0.001), pH (p=0.009), pO2 (p< 0.001) and pCO2 (p< 0.001). There was no statistically significant difference between Stable and AE group in terms of age, gender, total leucocyte count, blood urea, serum creatinine and HCO3 Conclusion: Serum UA may be a useful parameter in assessing disease severity and hypoxemia in known COPD patients and may be helpful in early intensive management. Increased serum UA levels denote poor state and bad prognosis. Since serum UA is a simple, inexpensive and readily available routine laboratory test, it can be used in risk stratification in patients with COPD and can help in early management of patients with COPD.
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Bhattacharya J, Ata S, Chakrabarty S, Jha SK, Roy P. Evaluation of Antidiabetic Activity of Vitis pedata in Alloxan Induced Diabetic Rats. Indian J Pharm Sci 2022. [DOI: 10.36468/pharmaceutical-sciences.958] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
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Shelver WL, Chakrabarty S, Young JM, Byrd CJ, Smith DJ. Evaluation of rapid and standard tandem mass spectrometric methods to analyse veterinary drugs and their metabolites in antemortem bodily fluids from food animals. Food Addit Contam Part A Chem Anal Control Expo Risk Assess 2021; 39:462-474. [PMID: 34939883 DOI: 10.1080/19440049.2021.2006801] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
Antemortem bodily fluids can serve as an indicator of veterinary medicine exposure prior to food animal slaughter. A multi-residue, rapid screen electrospray ionisation mass spectrometric (RS-ESI-MS) method was developed to analyse 10 veterinary drugs or metabolites (clenbuterol, erythromycin, flunixin, 5-hydroxyflunixin, meloxicam, ractopamine, ractopamine-glucuronide, salbutamol, tylosin, and zilpaterol) in hog oral fluid and bovine urine. Simple acetonitrile extraction with salting-out was employed to remove the analytes from matrices in less than 30 minutes. Instrumental analysis time was < 1 min/injection. Regression coefficients of matrix-matched calibration curves ranged 0.9743-0.9999 across all compounds with limits of detection ranging from 0.46-108 ng mL-1 for cattle urine and 0.19-64.4 ng mL-1 for hog oral fluid across all analytes. Except for ractopamine-glucuronide, analyte recoveries ranged from 92.7-106% for oral fluid and urine fortified at 30, 100, and 300 ng mL-1, with inter-day variations of < 25%. Ractopamine-glucuronide recovery was 93.3% for oral fluid fortified at 300 ng mL-1. The RS-ESI-MS method accurately identified ractopamine and/or ractopamine-glucuronide in incurred cattle urine with results correlating well with traditional LC-MS/MS and HPLC fluorescence methods. As far as we are aware, this is the first report of the direct quantification of ractopamine-glucuronide from biological matrices without lengthy hydrolysis and cleanup steps.
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Affiliation(s)
- Weilin L Shelver
- Edward T. Schafer Agricultural Research Center, Biosciences Research Laboratory, USDA-Agricultural Research Service, Fargo, ND, USA
| | | | - Jennifer M Young
- Department of Animal Sciences, North Dakota State University, Fargo, ND, USA
| | - Christopher J Byrd
- Department of Animal Sciences, North Dakota State University, Fargo, ND, USA
| | - David J Smith
- Edward T. Schafer Agricultural Research Center, Biosciences Research Laboratory, USDA-Agricultural Research Service, Fargo, ND, USA
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Radhakrishnan R, Kudva A, Kabekkodu SP, Chakrabarty S, Mallya SP, Satyamoorthy K. METHYLATION PROFILING OF DAPK1, LRPPRC, RAB6C, AND ZNF471 IN SALIVA AND TISSUES AS NOVEL EPIGENETIC MARKERS OF ORAL SQUAMOUS CELL CARCINOMA. Oral Surg Oral Med Oral Pathol Oral Radiol 2021. [DOI: 10.1016/j.oooo.2021.03.133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Chakrabarty S, Shelver WL, Smith DJ. Electrospray Ionization Inlet Tandem Mass Spectrometry: A Hyphenated Method for the Sensitive Determination of Chemicals in Animal Tissues and Body Fluids. J Am Soc Mass Spectrom 2021; 32:14-20. [PMID: 33401917 DOI: 10.1021/jasms.9b00114] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
This study demonstrates the utility of electrospray ionization inlet mass spectrometry (ESII-MS/MS) for the quantitative determination of analytes in complex animal matrices without chromatographic separation. Veterinary drugs including flunixin, its metabolite 5-hydroxyflunixin, and zilpaterol and persistent organic perfluoroalkyl compounds were determined in incurred plasma, urine, and/or tissue samples. Limits of detection (LOD) of zilpaterol in kidney, liver, lung, and muscle ranged from 0.02 to 0.06 ng/g, whereas the limit of quantitation (LOQ) for zilpaterol in all tissues was 0.1 ng/g. For urinary or plasma flunixin, 5-hydroxyflunixin, and PFOS/PFHxS, LODs ranged from 0.1 to 0.7 ng/mL while the LOQs ranged from 0.4 to 50 ng/mL. Regression coefficients for matrix-matched standard curves were 0.993-0.997, 0.977-0.999, and 0.999 for plasma, tissues, and urine, respectively. Correlations between quantitative results obtained by ESII-MS/MS and LC-MS for flunixin, 5-hydroxyflunixin, and zilpaterol ranged from 0.930 to 0.985. ESII-MS/MS provided rapid, sensitive, and accurate analyses of veterinary drugs and environmental contaminants from complex matrices without chromatographic separation.
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Affiliation(s)
- Shubhashis Chakrabarty
- USDA-Agricultural Research Service, Edward T. Schafer Agricultural Research Center, Biosciences Research Laboratory, 1616 Albrecht Boulevard, Fargo, North Dakota 58102, United States
| | - Weilin L Shelver
- USDA-Agricultural Research Service, Edward T. Schafer Agricultural Research Center, Biosciences Research Laboratory, 1616 Albrecht Boulevard, Fargo, North Dakota 58102, United States
| | - David J Smith
- USDA-Agricultural Research Service, Edward T. Schafer Agricultural Research Center, Biosciences Research Laboratory, 1616 Albrecht Boulevard, Fargo, North Dakota 58102, United States
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Chakrabarty S, Shelver WL, Smith DJ. Electrospray ionization rapid screening sans liquid chromatography column: A sensitive method for detection and quantification of chemicals in animal tissues and urine. Rapid Commun Mass Spectrom 2020; 34:e8876. [PMID: 32628302 DOI: 10.1002/rcm.8876] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Revised: 06/30/2020] [Accepted: 07/01/2020] [Indexed: 06/11/2023]
Abstract
RATIONALE Electrospray ionization mass spectrometry (ESI-MS) in conjunction with liquid chromatography (LC) can provide accurate quantitative data, but it is not well-suited for the rapid screening (RS) of analytes incurred into complex matrices. This study was designed to determine the usefulness of ESI for rapid detection and quantitation of veterinary drugs from complex biological matrices under near real-time conditions. METHODS Nine veterinary drugs or metabolites, clenbuterol, erythromycin, flunixin, 5-hydroxyflunixin, meloxicam, ractopamine, salbutamol, tylosin and zilpaterol, present in cow urine, sheep urine, sheep tissues (kidney, muscle, liver and lung) or pig kidney, were simultaneously analyzed. A simple sample clean-up procedure, which included dilution with 10% sodium carbonate followed by extraction with ethyl acetate, was used. For tissues, an additional pre-extraction with hexane was performed to remove fat prior to MS analysis. Samples were introduced into the mass spectrometer through the LC autosampler, but no chromatographic separation was employed. A Sciex 5600+ triple time-of-flight mass spectrometer with a dual-spray source interfaced with a Shimadzu Nexera LC system was used. Samples were analyzed in positive ion mode. RESULTS Sample extraction times were typically 10-30 min or less and instrumental analysis time was 1 min/sample. Regression coefficients of matrix-matched standard curves across all compounds ranged from 0.9701-0.9999 in urine (cow and sheep) and tissues (sheep kidney, liver, lung, muscle and pig kidney). Limits of detection ranged from 0.11 to 2.03 ng/mL across analytes in urine and 0.11 to 8.86 ng/g across tissues. Correlations between RS-ESI-MS and LC/MS/MS results were 0.956 to 0.998 for incurred residues of flunixin in cow urine, ractopamine in pig kidney and zilpaterol in sheep urine. CONCLUSIONS RS-ESI-MS provided rapid, sensitive, and accurate analyses of nine veterinary drugs from complex matrices with very little sample preparation and produced quantitative data akin to LC/MS/MS.
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Affiliation(s)
- Shubhashis Chakrabarty
- USDA-Agricultural Research Service, Edward T. Schafer Agricultural Research Center, Biosciences Research Laboratory, 1616 Albrecht Blvd, Fargo, ND, 58102, USA
| | - Weilin L Shelver
- USDA-Agricultural Research Service, Edward T. Schafer Agricultural Research Center, Biosciences Research Laboratory, 1616 Albrecht Blvd, Fargo, ND, 58102, USA
| | - David J Smith
- USDA-Agricultural Research Service, Edward T. Schafer Agricultural Research Center, Biosciences Research Laboratory, 1616 Albrecht Blvd, Fargo, ND, 58102, USA
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Smith DJ, Shelver WL, Chakrabarty S, Hoffman TW. Detection and quantification of residues in sheep exposed to trace levels of dietary zilpaterol HCl. Food Addit Contam Part A Chem Anal Control Expo Risk Assess 2019; 36:1289-1301. [DOI: 10.1080/19440049.2019.1627005] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- David J. Smith
- USDA ARS, Edward T. Schafer Agricultural Research Center, Biosciences Research Laboratory, Fargo, ND, USA
| | - Weilin L. Shelver
- USDA ARS, Edward T. Schafer Agricultural Research Center, Biosciences Research Laboratory, Fargo, ND, USA
| | - Shubhashis Chakrabarty
- USDA ARS, Edward T. Schafer Agricultural Research Center, Biosciences Research Laboratory, Fargo, ND, USA
- ORISE Post-Doctoral Fellow, Oak Ridge, USA
| | - Travis W. Hoffman
- Department of Animal Sciences, North Dakota State University, Fargo, ND, USA
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Bhatt AB, Wright TD, Anna K, Gupta M, Chakrabarty S, Flaherty PT, Hoang V, Burow M, Cavanaugh JE. Abstract P5-08-07: Study of diphenylamine analogs as inducers of mesenchymal to epithelial transition in breast cancer. Cancer Res 2019. [DOI: 10.1158/1538-7445.sabcs18-p5-08-07] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
The organization of cell cytoskeleton is altered in events of epithelial to mesenchymal transition (EMT), promotion of cell motility, and cancer metastases. EMT is associated with decreased cell-cell adhesion, downregulation of epithelial markers like E-Cadherin, cytokeratins, and occludins, and upregulation of mesenchymal markers such as N-cadherin, vimentin, and various transcription factors such as slug and ZEB. Epithelial to mesenchymal transition is also a consequence of drug resistance and is responsible for cancer metastases. Triple negative breast cancer is highly aggressive cancer and patients show poor prognosis and disease-free survival due to the lack of targeted therapy. Mitogen activated protein kinase pathway, including extracellular activated kinase ERK1/2 and ERK5, and phosphoinositide 3-kinase (PI3K) pathway are known to alter the cytoskeleton through the downstream activation of oncogenes such as FRA-1 and loss of focal adhesions. Of these pathways, the MEK5-ERK5 pathway is understudied in triple negative breast cancer TNBC, and there are few research tools available to selectively inhibit this pathway. The diphenylamine analogs were derived from the parent molecule Mekinist, a FDA approved MEK1/2 inhibitor for melanoma, and modified to gain selectivity towards MEK5. SC-1-151, a type-III allosteric inhibitor of MEK5 is a dual MEK1/2 (98.6%) and MEK5 (59%) inhibitor; the molecule inhibits cell viability and colony formation, and attenuates tumor growth.
SC-1-151 was serendipitously identified as a mesenchymal to epithelial transition activator in TNBC cell line MDA-MB-231. E-cadherin protein expression and cell morphology were examined to study MET after the treatment of MDA-MB-231 cells with different structural analogs of SC-1-151 after treatment for 5 days. The compound was further found to induce E-cadherin expression and epithelial phenotype in tamoxifen resistant estrogen positive MCF-7 cell line that underwent EMT. The compound is identified to promote this activity by targeting at least the ERK-FRA1-ZEB1 axis. Alkyl or N-Methyl piperazine substituents on the amide of ring 1 produced similar result as SC-1-151, and substituting the amide group with acid or ester also induced MET. In contrast, ortho-fluoro, para-iodo functional groups of the arene ring 2, when replaced with a meta-bromo substituent did not induce MET. We aim to test the compounds on EGF treated MDA-MB-468 cells to observe the attenuation of EGF induced EMT. Future studies will be performed to determine the specific protein interactions of the promising compounds.
Citation Format: Bhatt AB, Wright TD, Anna K, Gupta M, Chakrabarty S, Flaherty PT, Hoang V, Burow M, Cavanaugh JE. Study of diphenylamine analogs as inducers of mesenchymal to epithelial transition in breast cancer [abstract]. In: Proceedings of the 2018 San Antonio Breast Cancer Symposium; 2018 Dec 4-8; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2019;79(4 Suppl):Abstract nr P5-08-07.
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Affiliation(s)
- AB Bhatt
- Duquesne University, Pittsburgh, PA; Tulane University, New Orleans, LA
| | - TD Wright
- Duquesne University, Pittsburgh, PA; Tulane University, New Orleans, LA
| | - K Anna
- Duquesne University, Pittsburgh, PA; Tulane University, New Orleans, LA
| | - M Gupta
- Duquesne University, Pittsburgh, PA; Tulane University, New Orleans, LA
| | - S Chakrabarty
- Duquesne University, Pittsburgh, PA; Tulane University, New Orleans, LA
| | - PT Flaherty
- Duquesne University, Pittsburgh, PA; Tulane University, New Orleans, LA
| | - V Hoang
- Duquesne University, Pittsburgh, PA; Tulane University, New Orleans, LA
| | - M Burow
- Duquesne University, Pittsburgh, PA; Tulane University, New Orleans, LA
| | - JE Cavanaugh
- Duquesne University, Pittsburgh, PA; Tulane University, New Orleans, LA
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Chakrabarty S, Shelver WL, Hakk H, Smith DJ. Atmospheric Solid Analysis Probe and Modified Desorption Electrospray Ionization Mass Spectrometry for Rapid Screening and Semi-Quantification of Zilpaterol in Urine and Tissues of Sheep. J Agric Food Chem 2018; 66:10871-10880. [PMID: 30295475 DOI: 10.1021/acs.jafc.8b03925] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Ambient ionization mass spectrometric methods including desorption electrospray ionization (DESI) and atmospheric solid analysis probe (ASAP) have great potential for applications requiring real-time screening of target molecules in complex matrixes. Such techniques can also rapidly produce repeatable semiquantitative data, with minimal sample preparation, relative to liquid chromatography-mass spectrometry (LC-MS). In this study, a commercial ASAP probe was used to conduct both ASAP-MS and modified DESI (MDESI) MS analyses. We conducted real-time qualitative and semiquantitative analysis of the leanness-enhancing agent zilpaterol in incurred sheep urine, kidney, muscle, liver, and lung samples using ASAP-MS and MDESI MS. Using ASAP, limits of detection (LOD) and quantitation (LOQ) in urine were 1.1 and 3.7 ng/mL, respectively, while for MDESI MS they were 1.3 and 4.4 ng/mL, respectively. The LODs for tissues were 0.1-0.4 ng/g using ASAP, and 0.2-0.6 ng/g with MDESI MS. The LOQs of the tissues in ASAP were 0.4-1.2 ng/g and 0.5-2.1 ng/g in MDESI MS. Trace levels of zilpaterol were accurately analyzed in urine and tissues of sheep treated with dietary zilpaterol HCl. The correlation coefficient ( R2) between semiquantitative ASAP-MS and MDESI MS results of urine samples was 0.872. The data from ASAP and MDESI MS were validated using LC-MS/MS; urinary zilpaterol concentrations ≥5.0 ng/mL or tissue zilpaterol concentrations ≥1.5 ng/g were detected by ASAP and MDESI MS, respectively, 100% of the time. Forty samples could be analyzed in triplicate, directly from biological matrixes in under an hour.
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Affiliation(s)
- Shubhashis Chakrabarty
- USDA-Agricultural Research Service , Edward T. Schafer Agricultural Research Center, Biosciences Research Laboratory , 1616 Albrecht Boulevard , Fargo , North Dakota 58102 , United States
| | - Weilin L Shelver
- USDA-Agricultural Research Service , Edward T. Schafer Agricultural Research Center, Biosciences Research Laboratory , 1616 Albrecht Boulevard , Fargo , North Dakota 58102 , United States
| | - Heldur Hakk
- USDA-Agricultural Research Service , Edward T. Schafer Agricultural Research Center, Biosciences Research Laboratory , 1616 Albrecht Boulevard , Fargo , North Dakota 58102 , United States
| | - David J Smith
- USDA-Agricultural Research Service , Edward T. Schafer Agricultural Research Center, Biosciences Research Laboratory , 1616 Albrecht Boulevard , Fargo , North Dakota 58102 , United States
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Fenner MA, Chakrabarty S, Wang B, Pagnotti VS, Hoang K, Trimpin S, McEwen CN. An LC/MS Method Providing Improved Sensitivity: Electrospray Ionization Inlet. Anal Chem 2017; 89:4798-4802. [DOI: 10.1021/acs.analchem.6b05172] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Madeline A. Fenner
- Department of Chemistry & Biochemistry, University of the Sciences, Philadelphia, Pennsylvania 19104, United States
| | | | - Beixi Wang
- Department
of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
| | - Vincent S. Pagnotti
- Department of Chemistry & Biochemistry, University of the Sciences, Philadelphia, Pennsylvania 19104, United States
| | - Khoa Hoang
- Department of Chemistry & Biochemistry, University of the Sciences, Philadelphia, Pennsylvania 19104, United States
| | - Sarah Trimpin
- Department
of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
- MSTM, LLC, Newark, Delaware 19711, United States
| | - Charles N. McEwen
- Department of Chemistry & Biochemistry, University of the Sciences, Philadelphia, Pennsylvania 19104, United States
- MSTM, LLC, Newark, Delaware 19711, United States
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Shelver WL, Chakrabarty S, Smith DJ. Comparison of Lateral Flow Assay, Kidney Inhibition Swab, and Liquid Chromatography-Tandem Mass Spectrometry for the Detection of Penicillin G Residues in Sow Urine. J Agric Food Chem 2017; 65:1778-1783. [PMID: 28205436 DOI: 10.1021/acs.jafc.6b05049] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Sows (n = 126) were administered penicillin G; urine, collected at slaughter, was screened by kidney inhibition swab (KIS; 4 h testing time) and then stored at -80 °C (∼1200 days) until analysis by lateral flow assay (LF, ∼5 min testing time) and tandem quadrupole LC-MS/MS (TQ) analysis. The stability of penicillin in urine during storage was verified using TQ analyses. Quantitative results were well-correlated (R2 = 0.98) with only a ∼10% decrease in penicillin concentration during the 3-year storage period. KIS retesting of stored samples returned results consistent with the original analyses. Lateral flow assay results were highly correlated with the KIS and TQ results. A KIS positive sample, which was not confirmed by TQ or LF, was assayed by Triple-TOF LC-MS to determine the cause of the apparent false positive. This study suggests LF can be used to quickly and efficiently screen for penicillin G residues before slaughter.
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Affiliation(s)
- Weilin L Shelver
- Agricultural Research Service, Biosciences Research Laboratory, United States Department of Agriculture , 1605 Albrecht Boulevard, Fargo, North Dakota 58102-2765, United States
| | - Shubhashis Chakrabarty
- Agricultural Research Service, Biosciences Research Laboratory, United States Department of Agriculture , 1605 Albrecht Boulevard, Fargo, North Dakota 58102-2765, United States
| | - David J Smith
- Agricultural Research Service, Biosciences Research Laboratory, United States Department of Agriculture , 1605 Albrecht Boulevard, Fargo, North Dakota 58102-2765, United States
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Chakrabarty S, Dutta A, Pal M. Effect of Mn and Ni codoping on ion dynamics of nanocrystalline cobalt ferrite: A structure property correlation study. Electrochim Acta 2015. [DOI: 10.1016/j.electacta.2015.10.027] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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16
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Chakrabarty S, DeLeeuw JL, Woodall DW, Jooss K, Narayan SB, Trimpin S. Reproducibility and Quantification of Illicit Drugs Using Matrix-Assisted Ionization (MAI) Mass Spectrometry. Anal Chem 2015; 87:8301-6. [DOI: 10.1021/acs.analchem.5b01436] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Shubhashis Chakrabarty
- MS,
LLC., 28 Tenby Chase Drive, Newark, Delaware 19711, United States
- Department
of Chemistry, Wayne State University, 5101 Cass Avenue, Detroit, Michigan 48202, United States
| | - Jessica L. DeLeeuw
- Department
of Chemistry, Wayne State University, 5101 Cass Avenue, Detroit, Michigan 48202, United States
| | - Daniel W. Woodall
- Department
of Chemistry, Wayne State University, 5101 Cass Avenue, Detroit, Michigan 48202, United States
| | - Kevin Jooss
- Department
of Chemistry, Wayne State University, 5101 Cass Avenue, Detroit, Michigan 48202, United States
| | - Srinivas B. Narayan
- Detroit Medical
Center: Detroit Hospital, 4201 St.
Antoine Street, Detroit, Michigan 48201, United States
| | - Sarah Trimpin
- MS,
LLC., 28 Tenby Chase Drive, Newark, Delaware 19711, United States
- Department
of Chemistry, Wayne State University, 5101 Cass Avenue, Detroit, Michigan 48202, United States
- Cardiovascular
Research Institute, Wayne State University School of Medicine, 421
East Canfield, Detroit, Michigan 48201, United States
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17
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Debnath MR, Debnath CR, Chakrabarty S, Haque MA, Rana MS. Case report on carotid body tumor. Mymensingh Med J 2014; 23:792-795. [PMID: 25481603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
A 40 years old lady presented to us with the complaints of repeated attack of syncope with left sided neck swelling. Ultrasonography, Color Doppler study and arteriography were done which revealed a solid vascular mass in the carotid bifurcation. Mass was resected and histopathology was done. Histopathologic findings were typical of a carotid body tumour. As carotid body tumour is a rare disease. So, we are going to present this in this article.
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Affiliation(s)
- M R Debnath
- Dr Manju Rani Debnath, Medical Officer, Blood Transfusion Centre, Mymensingh Medical College Hospital (MMCH), Mymensingh, Bangladesh
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18
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Chakrabarty S, Hariharan R, Gowda D, Suresh H. Association of premature androgenetic alopecia and metabolic syndrome in a young Indian population. Int J Trichology 2014; 6:50-3. [PMID: 25191037 PMCID: PMC4154150 DOI: 10.4103/0974-7753.138586] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
Abstract
Context: Although evidences for association of androgenetic alopecia (AGA) with metabolic syndrome (MetS) are accruing, inconclusiveness with respect to the gender specificity and differential association of MetS with increasing severity of AGA continues to persist. Furthermore, data specific to Indian settings are relatively sparse. Aims: The present study aimed at assessing the frequency of MetS in individuals with early AGA in Indian settings. Settings and Design: A case-control study was conducted at a trichology clinic in Bengaluru between April 2012 and September 2012 with a total of 85 cases of AGA and 85 age-matched controls. Materials and Methods: The Norwood-Hamilton classification was used to assess the grade of AGA. MetS was defined according to the National Cholesterol Education Program Adult Treatment Panel III criteria. Blood pressure, blood glucose, lipid parameters, and body mass index along with anthropometric measurements were assessed in all study participants. Statistical Analysis Used: Chi-square test was used to compare proportions between groups. Means were compared between groups using Student's t-test. Results: MetS was seen in a higher proportion of patients with AGA (43.5%) as compared to the control group (2.4%) and the differences were statistically significant (P < 0.001). As compared to controls, patients with AGA had higher triglycerides (P < 0.001), systolic blood pressure (P < 0.001), diastolic blood pressure (P < 0.001) along with significantly lower high-density lipoprotein cholesterol levels (P < 0.001). Severity of AGA was not associated with MetS. Conclusions: AGA is associated with MetS in male Indian patients aged <30 years. Studies with large sample sizes may be required to conclusively define any putative associations between AGA grades and MetS.
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Affiliation(s)
- S Chakrabarty
- Hairline International Hair Clinic, Bengaluru, Karnataka, India
| | - R Hariharan
- Department of Observational, Research Clinibyte Health Sciences Pvt. Ltd., Bengaluru, Karnataka, India
| | - Dg Gowda
- Hairline International Hair Clinic, Bengaluru, Karnataka, India
| | - Hemalini Suresh
- Hairline International Hair Clinic, Bengaluru, Karnataka, India
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19
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Talukder SU, Islam AHMW, Munwar S, Reza AQM, Ahmed T, Bhuiyan AH, Masud R, Siddique AB, Shohel SR, Alam MS, Miah A, Chakrabarty S, Karim A. Percutaneous Coronary Intervention (PCI) of Chronic Total Occlusion (CTO) lesion in Bangladeshi patient population: a single center experience- In hospital and 90 days outcome. Pulse (Basel) 2014. [DOI: 10.3329/pulse.v5i1.20185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
Objectives Aim of the study was to evaluate the primary in-hospital success and 90 days outcome of PCI in patients with CTO lesions, using either Bare-metal stents (BMS) or Drug Eluting Stent (DES) like Sirolimus-eluting or Paclitaxel-eluting stent. Methods Total 71 patients were included in this non-randomized prospective cohort as per the definition of CTO, from a total of 875 patients who had PCI at our center in the quantifying period. Total 92 stents were deployed in 71 patients. After the guide wire crossing and the balloon dilation, measurement of the culprit lesion were done by using Siemens QCA measuring system. Among the patients, Male: 59 and Female: 12. Mean age were for Male: 53yrs, for Female: 65yrs. Associated CAD risk factors were Dyslipidemia, High Blood pressure, Diabetes Mellitus, Positive FH for CAD and Smoking (all male). Results Our study shows 71 patients (8.1%) had CTO lesion out of total 875 PCI procedures. Among the study group; 56 (79%) were Dyslipidemic, 50 (70%) were hypertensive: 40 (56%) patients were Diabetic, 25 (42%) were all male smoker. Female patients were more obese (BMI M 26: F 27) and developed CAD in advance age. We found that the incidences of CTO lesions were more in LAD territory 27 (38%) followed by RCA 26 (37%) and LCX 18 (25%). Average length and diameter of stented vessel was greater in RCA than LAD and LCX. Stents used: BMS 34 (36.9%), Sirolimus 25 (27.2%), Paclitaxel 18 (19.6%), Biolimus 10 (10.8%) and Everolimus 5 (5.4%). Post procedural, in-hospital and 90 days out come was 100% in our present study. Conclusion Our study has revealed that PCI in patients with CTO lesion has shown good success rate in our hospital with no procedural complication both in-hospital and 90 days after, either treated with BMS or DES. DOI: http://dx.doi.org/10.3329/pulse.v5i1.20185 Pulse Vol.5 January 2011 p.19-26
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Pagnotti VS, Chakrabarty S, Wang B, Trimpin S, McEwen CN. Gas-Phase Ions Produced by Freezing Water or Methanol for Analysis Using Mass Spectrometry. Anal Chem 2014; 86:7343-50. [DOI: 10.1021/ac500132j] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Vincent S. Pagnotti
- Department
of Chemistry and Biochemistry, University of the Sciences, Philadelphia, Pennsylvania 19104, United States
| | - Shubhashis Chakrabarty
- Department
of Chemistry and Biochemistry, University of the Sciences, Philadelphia, Pennsylvania 19104, United States
| | - Beixi Wang
- Department
of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
| | - Sarah Trimpin
- Department
of Chemistry, Wayne State University, Detroit, Michigan 48202, United States
| | - Charles N. McEwen
- Department
of Chemistry and Biochemistry, University of the Sciences, Philadelphia, Pennsylvania 19104, United States
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21
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Chakrabarty S, De K, Das S, Amaral VS, Chatterjee K. General route to synthesize of metal (Ni, Co, Mn, Fe) oxide nanostructure and their optical and magnetic behaviour. J Nanosci Nanotechnol 2014; 14:4236-4244. [PMID: 24738377 DOI: 10.1166/jnn.2014.8080] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Here we report a generalised way to prepare transitional metal (Ni, Co, Mn, Fe) oxide nanostructures via solvothermal route followed by controlled heat treatment. The method has been successfully involved to produce structurally uniform and well crystalline phase of the different metal (Ni, Co, Mn) oxide faceted nanoparticles and porous nanorods (Fe2O3) with highly anisotropic surfaces. The product materials were characterized by the X-ray powder diffraction and electron microscope (SEM, TEM) to investigate the structural and morphological details. Optical absorption study was carried out by UV-VIS spectrophotometer and the results are analysed on the basis of their electronic transitions of 3d shell and band energies. The details magnetic investigation was carried out by the measurement of magnetization with varying magnetic field and temperature. The observed magnetic behaviour is explained on the basis of uncompensated spins lying on the surface which is extremely anisotropic in the present systems of the synthesized materials.
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Sahani R, Dinda A, Kumar U, Chakrabarty S, Bharati P. Physical growth and nutritional status of Car Nicobarese and Moplah children of Andaman-Nicobar Islands in India. Homo 2014; 65:161-70. [PMID: 24630782 DOI: 10.1016/j.jchb.2013.10.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/06/2013] [Accepted: 10/29/2013] [Indexed: 10/25/2022]
Abstract
The objective of this cross-sectional study was to assess growth and nutritional status of Car Nicobarese children and compare it with Moplah children, who live in a similar environment. A total of 436 Car Nicobarese children and 438 Moplah children, aged 6-10 years, were selected for the study. The anthropometric measurements included stature, body weight, sitting height, bi-acromial breadth, bi-iliac breadth, mid-upper arm circumference, skinfold thickness of biceps, triceps and subscapular region. 50th percentile (median) growth curves were calculated among the studied children and compared with Centers for Disease Control and Prevention (CDC) 2000 reference. Z scores of weight for age (WAZ), height for age (HAZ) and BMI for age (BMIZ) were computed using growth references of the CDC 2000. It was observed that the Car Nicobarese children were shorter but heavier than Moplah children of both sexes all through the age range, which was also reflected in median value of anthropometric variables. Car Nicobarese children were nutritionally better compared to Moplah children based on the nutritional indices. The major differences between Car Nicobarese and Moplah children were found in their arm muscularity rather than arm adiposity. Overall, Car Nicobarese children were nutritionally in normal and better condition than Moplah children. However, present dietary change (intake of high calories and fat diet) of Car Nicobarese population may be reflected in the form of childhood obesity in the recent future, which has already been observed in their adult population.
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Affiliation(s)
- R Sahani
- Anthropological Survey of India, Head Office, 27 Jawaharlal Nehru Road, Kolkata 700 016, West Bengal, India.
| | - A Dinda
- Anthropological Survey of India, Eastern Regional Centre, Salt Lake, Kolkata 700 067, West Bengal, India
| | - U Kumar
- Anthropological Survey of India, Head Office, 27 Jawaharlal Nehru Road, Kolkata 700 016, West Bengal, India
| | - S Chakrabarty
- Department of Anthropology, Mrinalini Datta Mahavidyapith, Kolkata 700 051, West Bengal, India
| | - P Bharati
- Biological Anthropology Unit, Indian Statistical Institute, 203 B.T. Road, Kolkata 700 108, West Bengal, India
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23
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Galan JF, Tang CN, Chakrabarty S, Liu Z, Moyna G, Pophristic V. Conformational preferences of furan- and thiophene-based arylamides: a combined computational and experimental study. Phys Chem Chem Phys 2014; 15:11883-92. [PMID: 23765415 DOI: 10.1039/c3cp50353d] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We examine the conformational preferences of the furan- and thiophene-based arylamides, N-methylfuran-2-carboxamide (3) and N-methylthiophene-2-carboxamide (4), using a combination of computational methods and NMR experiments. The compound choice stems from their use as foldamer building blocks. We quantify the differences in the conformational rigidity of the two compounds, which governs corresponding foldamer conformations. Specifically, we demonstrate the effects of intramolecular hydrogen bonding (H-bonding), geometrical patterns and solvent polarity on arylamide conformations by comparing 3, 4 and previously studied ortho-methoxy N-methylbenzamide (1) and ortho-methylthio N-methylbenzamide (2). The study reveals that compound 3, despite its non-optimal S(5)-type H-bond geometry, retains a large portion of the H-bonded (eclipsed) conformation even in polar protic solvents. This behaviour is consistent with the quantum mechanical (QM) torsional energy profile. The percentages of H-bonded conformers that 3 retains are just slightly smaller than those of 1, which has a stronger S(6)-type H-bond. As for 2 and 4, the replacement of the O atom in 1 by an S atom in 2 results in a 70–90% loss of the H-bonded conformer in solution. However, the equivalent O to S replacement in 3 (leading to 4) causes only 15–30% loss of the eclipsed conformers in 4. Therefore, conformational preferences of 4 are very different from 2, in contrast to the similarity between 3 and 1. This study shows how the interplay of several forces modulates the conformational flexibility of arylamides. It also attests the strategy we are developing, which leads to accurate prediction of foldamer structure. The vital component of this strategy is the re-parameterization of critical force field parameters based on QM potential energy profiles, as well as validation of these parameters using experimental data in solution.
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Affiliation(s)
- Jhenny F Galan
- Department of Chemistry & Biochemistry, University of the Sciences in Philadelphia, 600 South 43rd Street, Philadelphia, PA 19104, USA
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24
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Chakrabarty S, Rice CA, Mazzotti FJ, Dietsche R, Maier JP. Electronic absorption spectrum of triacetylene cation for astronomical considerations. J Phys Chem A 2013; 117:9574-7. [PMID: 23461383 DOI: 10.1021/jp312294f] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
The A(2)Πg ← X(2)Πu electronic transition (4800-6000 Å) of triacetylene cation was measured in an ion trap, where the vibrational and rotational degrees of freedom were equilibrated to 25 K. The rotational profile of the origin band is predicted by a collisional-radiative rate model under conditions expected in diffuse interstellar clouds. Variation in the density of the surrounding gas, rotational temperature, and velocity dispersion are taken into account.
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Affiliation(s)
- S Chakrabarty
- Department of Chemistry, University of Basel , Klingelbergstr. 80, CH-4056 Basel, Switzerland
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25
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Chakrabarty S, Pagnotti VS, Inutan ED, Trimpin S, McEwen CN. A new matrix assisted ionization method for the analysis of volatile and nonvolatile compounds by atmospheric probe mass spectrometry. J Am Soc Mass Spectrom 2013; 24:1102-7. [PMID: 23661423 DOI: 10.1007/s13361-013-0634-9] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2013] [Revised: 03/27/2013] [Accepted: 03/28/2013] [Indexed: 05/25/2023]
Abstract
Matrix assisted ionization of nonvolatile compounds is shown not to be limited to vacuum conditions and does not require a laser. Simply placing a solution of analyte dissolved with a suitable matrix such as 3-nitrobenzonitrile (3-NBN) or 2,5-dihydroxyacetophenone on a melting point tube and gently heating the dried sample near the ion entrance aperture of a mass spectrometer using a flow of gas produces abundant ions of peptides, small proteins, drugs, and polar lipids. Fundamental studies point to matrix-mediated ionization occurring prior to the entrance aperture of the mass spectrometer. The method is analytically useful, producing peptide mass fingerprints of bovine serum albumin tryptic digest consuming sub-picomoles of sample. Application of 100 fmol of angiotensin I in 3-NBN matrix produces the doubly and triply protonated molecular ions as the most abundant peaks in the mass spectrum. No carryover is observed for samples containing up to 100 pmol of this peptide. A commercial atmospheric samples analysis probe provides a simple method for sample introduction to an atmospheric pressure ion source for analysis of volatile and nonvolatile compounds without using the corona discharge but using sample preparation similar to matrix-assisted laser desorption/ionization.
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Chakrabarty S, Croft MS, Marko MG, Moyna G. Synthesis and evaluation as potential anticancer agents of novel tetracyclic indenoquinoline derivatives. Bioorg Med Chem 2013; 21:1143-9. [DOI: 10.1016/j.bmc.2012.12.026] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2012] [Revised: 12/17/2012] [Accepted: 12/25/2012] [Indexed: 11/24/2022]
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Pagnotti VS, Chakrabarty S, McEwen CN. Carbonation and other super saturated gases as solution modifiers for improved sensitivity in solvent assisted ionization inlet (SAII) and ESI. J Am Soc Mass Spectrom 2013; 24:186-92. [PMID: 23296909 DOI: 10.1007/s13361-012-0535-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2012] [Revised: 10/31/2012] [Accepted: 11/04/2012] [Indexed: 05/25/2023]
Abstract
Solvent Assisted Ionization Inlet (SAII) produces ions in a heated inlet to a mass spectrometer from aqueous and aqueous/organic solutions with high sensitivity. However, the use of acid modifiers, which typically aids electrospray ionization, generally results in ion suppression in SAII. Here we demonstrate that the use of carbonation and other super-saturated gases as solution modifiers increases analyte ion abundance and reduces metal cation adduction in SAII. Carbonation is also found to enhance electrospray ionization. The mechanistic and practical utility of carbonation in mass spectrometry is addressed.
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Pagnotti VS, Chakrabarty S, Harron AF, McEwen CN. Increasing the Sensitivity of Liquid Introduction Mass Spectrometry by Combining Electrospray Ionization and Solvent Assisted Inlet Ionization. Anal Chem 2012; 84:6828-32. [DOI: 10.1021/ac3014115] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Vincent S. Pagnotti
- University of the Sciences, Department of Chemistry & Biochemistry, Philadelphia, Pennsylvania 19104, United States
| | - Shubhashis Chakrabarty
- University of the Sciences, Department of Chemistry & Biochemistry, Philadelphia, Pennsylvania 19104, United States
| | - Andrew F. Harron
- University of the Sciences, Department of Chemistry & Biochemistry, Philadelphia, Pennsylvania 19104, United States
| | - Charles N. McEwen
- University of the Sciences, Department of Chemistry & Biochemistry, Philadelphia, Pennsylvania 19104, United States
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Chakrabarty S, Rajakumar A, Raghuveer K, Sridevi P, Mohanachary A, Prathibha Y, Bashyam L, Dutta-Gupta A, Senthilkumaran B. Endosulfan and flutamide, alone and in combination, target ovarian growth in juvenile catfish, Clarias batrachus. Comp Biochem Physiol C Toxicol Pharmacol 2012; 155:491-7. [PMID: 22227439 DOI: 10.1016/j.cbpc.2011.12.007] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/29/2011] [Revised: 12/18/2011] [Accepted: 12/20/2011] [Indexed: 12/14/2022]
Abstract
Juvenile Catfish(es), Clarias batrachus of 50 days post hatch (dph) were exposed to endosulfan (2.5 parts per billion [ppb]) and flutamide (33 ppb), alone and in combination for 50 days to access their impact on ovarian development. The doses used in this study were nominal considering pervious reports. Sampling was done at 100 dph to perform histology and measurement of various transcripts, estradiol-17β and aromatase activity. In general, treatments enhanced expression of ovary-specific transcription factors, steroidogenic enzymes steroidogenic acute regulatory protein and aromatases while transcripts of tryptophan hydroxylase2 (tph2) and catfish gonadotropin-releasing hormone declined in the brain of all treated groups with maximum reduction in the endosulfan group. Significant reduction of tph2 immunoreactivity in the forebrain/telencephalon-preoptic area endorsed our results. Increased number of pre-vitellogenic and less immature oocytes in the treated groups indicated hastened ovarian growth. Elevated ovarian aromatase activity and plasma estradiol-17β levels were noticed in the treated groups with maximum being in the endosulfan group. These data together demonstrate that the exposure of endosulfan causes synchronous precocious ovarian development better than flutamide, alone or in combination. Our results suggest that both endosulfan and flutamide alter ovarian growth by triggering precocious development in catfish.
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Affiliation(s)
- S Chakrabarty
- Department of Animal Sciences, School of Life Sciences-Centre for Advanced Studies, University of Hyderabad, P. O. Central University, Hyderabad - 500 046, Andhra Pradesh, India
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Rajakumar A, Singh R, Chakrabarty S, Murugananthkumar R, Laldinsangi C, Prathibha Y, Sudhakumari CC, Dutta-Gupta A, Senthilkumaran B. Endosulfan and flutamide impair testicular development in the juvenile Asian catfish, Clarias batrachus. Aquat Toxicol 2012; 110-111:123-132. [PMID: 22307005 DOI: 10.1016/j.aquatox.2011.12.018] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2011] [Revised: 12/14/2011] [Accepted: 12/25/2011] [Indexed: 05/31/2023]
Abstract
Endosulfan and flutamide, a widely used pesticide and a prostate cancer/infertility drug, respectively, have an increased risk of causing endocrine disruption if they reach water bodies. Though many studies are available on neurotoxicity/bioaccumulation of endosulfan and receptor antagonism of flutamide, only little is known about their impact on testicular steroidogenesis at molecular level. Sex steroids play an important role in sex differentiation of lower vertebrates including fishes. Hence, a small change in their levels caused by endocrine disruptors affects the gonadal development of aquatic vertebrates significantly. The aim of this study was to evaluate the effects of endosulfan and flutamide on testis-related transcription factor and steroidogenic enzyme genes with a comparison on the levels of androgens during critical period of catfish testicular development. We also analyzed the correlation between the above-mentioned genes and catfish gonadotropin-releasing hormone (cfGnRH)-tryptophan hydroxylase2 (tph2). The Asian catfish, Clarias batrachus males at 50 days post hatch (dph) were exposed to very low dose of endosulfan (2.5 μg/L) and flutamide (33 μg/L), alone and in combination for 50 days. The doses used in this study were far less than those used in the previous studies of flutamide and reported levels of endosulfan in surface water and sediments. Sampling was done at end of the treatments (100 dph) to perform testicular germ cell count (histology), measurements of testosterone (T) and 11-ketotestosterone (11-KT) by enzyme immunoassay and transcript quantification by quantitative real-time PCR. In general, treatments decreased the expression of several genes including testis-related transcription factors (dmrt1, sox9a and wt1), steroidogenic enzymes (11β-hsd2, 17β-hsd12 and P450c17), steroidogenic acute regulatory protein and orphan nuclear receptors (nr2c1 and Ad4BP/SF-1). In contrast, the transcripts of cfGnRH and tph2 were elevated in the brain of all treated groups with maximum elevation in the endosulfan group. However, combination of endosulfan and flutamide (E+F) treatment showed minor antagonism in a few results of transcript quantification. Levels of T and 11-KT were elevated after flutamide and E+F treatments while no change was seen in the endosulfan group signifying the effect of flutamide as an androgen receptor antagonist. All the treatments modulated testis growth by decreasing the progression of differentiation of spermatogonia to spermatocytes. Based on these results, we suggest that the exposure to endosulfan and flutamide, even at low doses, impairs testicular development either directly or indirectly at the level of brain.
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Affiliation(s)
- A Rajakumar
- Department of Animal Sciences, School of Life Sciences-Centre for Advanced Studies, University of Hyderabad, P. O. Central University, Hyderabad 500046, Andhra Pradesh, India
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Ronhovde P, Chakrabarty S, Hu D, Sahu M, Sahu KK, Kelton KF, Mauro NA, Nussinov Z. Detection of hidden structures for arbitrary scales in complex physical systems. Sci Rep 2012; 2:329. [PMID: 22461970 PMCID: PMC3314987 DOI: 10.1038/srep00329] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2011] [Accepted: 02/29/2012] [Indexed: 11/14/2022] Open
Abstract
Recent decades have experienced the discovery of numerous complex materials. At the root of the complexity underlying many of these materials lies a large number of contending atomic- and largerscale configurations. In order to obtain a more detailed understanding of such systems, we need tools that enable the detection of pertinent structures on all spatial and temporal scales. Towards this end, we suggest a new method that applies to both static and dynamic systems which invokes ideas from network analysis and information theory. Our approach efficiently identifies basic unit cells, topological defects, and candidate natural structures. The method is particularly useful where a clear definition of order is lacking, and the identified features may constitute a natural point of departure for further analysis.
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Ronhovde P, Chakrabarty S, Hu D, Sahu M, Sahu KK, Kelton KF, Mauro NA, Nussinov Z. Detecting hidden spatial and spatio-temporal structures in glasses and complex physical systems by multiresolution network clustering. Eur Phys J E Soft Matter 2011; 34:105. [PMID: 21959545 DOI: 10.1140/epje/i2011-11105-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2011] [Revised: 08/03/2011] [Accepted: 08/05/2011] [Indexed: 05/31/2023]
Abstract
We elaborate on a general method that we recently introduced for characterizing the "natural" structures in complex physical systems via multi-scale network analysis. The method is based on "community detection" wherein interacting particles are partitioned into an "ideal gas" of optimally decoupled groups of particles. Specifically, we construct a set of network representations ("replicas") of the physical system based on interatomic potentials and apply a multiscale clustering ("multiresolution community detection") analysis using information-based correlations among the replicas. Replicas may i) be different representations of an identical static system, ii) embody dynamics by considering replicas to be time separated snapshots of the system (with a tunable time separation), or iii) encode general correlations when different replicas correspond to different representations of the entire history of the system as it evolves in space-time. Inputs for our method are the inter-particle potentials or experimentally measured two (or higher order) particle correlations. We apply our method to computer simulations of a binary Kob-Andersen Lennard-Jones system in a mixture ratio of A(80)B(20) , a ternary model system with components "A", "B", and "C" in ratios of A(88)B(7)C(5) (as in Al(88)Y(7)Fe(5) , and to atomic coordinates in a Zr(80)Pt(20) system as gleaned by reverse Monte Carlo analysis of experimentally determined structure factors. We identify the dominant structures (disjoint or overlapping) and general length scales by analyzing extrema of the information theory measures. We speculate on possible links between i) physical transitions or crossovers and ii) changes in structures found by this method as well as phase transitions associated with the computational complexity of the community detection problem. We also briefly consider continuum approaches and discuss rigidity and the shear penetration depth in amorphous systems; this latter length scale increases as the system becomes progressively rigid.
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Affiliation(s)
- P Ronhovde
- Department of Physics, Washington University in St. Louis, Campus Box 1105, 1 Brookings Drive, St. Louis, MO 63130, USA
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Abstract
NiO-silica nanocomposites with average diameter ranging from 2–40 nm were prepared by sol-gel method followed by the heat treatment varying from 400°C to 1000°C. The details of morphology and crystalline nature of all the as prepared samples were characterized by TEM, HRTEM, and XRD analysis. The planes obtained from SAED pattern supports the planes originated from XRD study. From the optical absorption study, it is revealed that the band gap energy of NiO can extensively be manipulated by composite formation with silica and the size variation of that nanocomposite. Absorption peak position varies almost linearly with the oxidation temperature of the samples. Photoluminescence spectroscopy reveals that NiO-silica nanocomposite, prepared at 600°C and below, shows strong emission at 3.62 eV, but the nanocomposites with bigger size greatly hinder the effect of selective emissivity.
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Affiliation(s)
- S. Chakrabarty
- Department of Physics and Technophysics, Vidyasagar University, Midnapore 721102, India
| | - K. Chatterjee
- Department of Physics and Technophysics, Vidyasagar University, Midnapore 721102, India
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Kumar CKK, Chakrabarty S. A comparative study of static stretching versus ballistic stretching on the flexibility of the hamstring muscles of athletes. Br J Sports Med 2010. [DOI: 10.1136/bjsm.2010.078725.50] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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Dimitrova N, Gorthi A, Prasada SK, Chakrabarty S, Keswarpu P, Banerjee N, Janevski A, Kiradi PH, Khandige S, Satyamoorthy K. Abstract P3-04-08: Epigenetic Changes Due to DNA Methylation in CpG Islands during Breast Cancer Progression. Cancer Res 2010. [DOI: 10.1158/0008-5472.sabcs10-p3-04-08] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
DNA methylation has been associated with several key events of gene regulation and to human cancer. It is not yet known how the epigenome of various populations is associated with clinical manifestations during the course of the disease. In this poster we describe a method for stratifying breast cancer patients from Indian origin using CpG island microarray from the University Healthcare Network (UHN) Toronto (human CpG island 12k microarray chip, HCGI12K). DNA samples were obtained from a prospective study cohort which consisted of 51 female primary breast cancers. All patients had been undergoing treatment in a tertiary care hospital and its associated centers in the southern part of India between 2007 and 2009. We have identified and classified the DNA methylation in CpG islands of patient samples using various clinical parameters such as age of disease onset, menopausal status, hormone receptor status and Her2 status. We present the methods to analyze the data from UHN CpG island arrays used in a high throughput methylation study in order to derive decision rules of stratifying the data into basic classes such as normal and benign conditions, and infiltrating ductal carcinoma. Results will be presented pertaining to differential methylation status of patients in different categories such as age of disease onset, menopausal status, hormone receptor status and Her2 status.
Citation Information: Cancer Res 2010;70(24 Suppl):Abstract nr P3-04-08.
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Affiliation(s)
- N Dimitrova
- Philips Research, Briarcliff Manor, NY; Philips Research, Bangalore, NY, India; Manipal University, Manipal, Karnataka, India
| | - A Gorthi
- Philips Research, Briarcliff Manor, NY; Philips Research, Bangalore, NY, India; Manipal University, Manipal, Karnataka, India
| | - SK Prasada
- Philips Research, Briarcliff Manor, NY; Philips Research, Bangalore, NY, India; Manipal University, Manipal, Karnataka, India
| | - S Chakrabarty
- Philips Research, Briarcliff Manor, NY; Philips Research, Bangalore, NY, India; Manipal University, Manipal, Karnataka, India
| | - P Keswarpu
- Philips Research, Briarcliff Manor, NY; Philips Research, Bangalore, NY, India; Manipal University, Manipal, Karnataka, India
| | - N Banerjee
- Philips Research, Briarcliff Manor, NY; Philips Research, Bangalore, NY, India; Manipal University, Manipal, Karnataka, India
| | - A Janevski
- Philips Research, Briarcliff Manor, NY; Philips Research, Bangalore, NY, India; Manipal University, Manipal, Karnataka, India
| | - PH Kiradi
- Philips Research, Briarcliff Manor, NY; Philips Research, Bangalore, NY, India; Manipal University, Manipal, Karnataka, India
| | - S Khandige
- Philips Research, Briarcliff Manor, NY; Philips Research, Bangalore, NY, India; Manipal University, Manipal, Karnataka, India
| | - K. Satyamoorthy
- Philips Research, Briarcliff Manor, NY; Philips Research, Bangalore, NY, India; Manipal University, Manipal, Karnataka, India
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Som S, Pal M, Chakrabarty S, Bharati P. Socioeconomic impact on child immunisation in the districts of West Bengal, India. Singapore Med J 2010; 51:406-412. [PMID: 20593145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
INTRODUCTION Knowledge of inter-district variations in immunisation coverage and the reasons for their existence is of utmost importance in a region in which variations in the socioeconomic factors are known to have a marked influence on immunisation coverage. METHODS This study was based on a sample of 1,279 children aged 12-35 months. Data was obtained from the District Level Household Survey under the Reproductive and Child Health project (DLHS-RCH-2) that was conducted from 2002 to 2004. Descriptive studies and logistic regression analyses were conducted to examine the variations in immunisation coverage. RESULTS Approximately 54 percent of children in West Bengal were covered for immunisation. The results for receiving full immunisation varied greatly between the various districts, ranging from 23.3 percent in Murshidabad to 72.2 percent in Hugli. Low rates of coverage were found among the vulnerable groups of poor minorities, especially in rural areas. No evidence of gender differences was found. The educational level of the parents was found to have a significant influence on child immunisation coverage. CONCLUSION In order to improve upon the rates of child immunisation coverage in West Bengal, efforts should be concentrated on poor children from minority groups and those living in rural areas.
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Affiliation(s)
- S Som
- Sociological Research Unit, Indian Statistical Institute, 203 BT Road, Kolkata 700 108 West Bengal, India
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Bharati S, Chakrabarty S, Som S, Pal M, Bharati P. Socio–economic determinants of underweight children in West Bengal, India. ASIAN PAC J TROP MED 2010. [DOI: 10.1016/s1995-7645(10)60078-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
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Chakrabarty S, Jasmine, Bhadaliya C, Nayan Sinha B, Mahesh A, Bai H, Blond SY, Jayaprakash V. Inhibitors of Human Histone Deacetylase: Synthesis and Enzyme Assay of Hydroxamates with Piperazine Linker. Arch Pharm (Weinheim) 2010; 343:167-72. [DOI: 10.1002/ardp.200900117] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Bandyopadhyay M, Bhakta A, Chakrabarty S, Pal M, Bharati P. Clinical and bacteriological correlates of whole blood interferon gamma (IFN-γ) in newly detected cases of pulmonary TB. ASIAN PAC J TROP MED 2010. [DOI: 10.1016/s1995-7645(10)60014-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
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Mehta R, Kundu D, Chakrabarty S, Bharati P. Periodontal conditions and treatment in urban and rural population of West Bengal, India. ASIAN PAC J TROP MED 2010. [DOI: 10.1016/s1995-7645(10)60058-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022] Open
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Liu E, Chakrabarty S, Harlan D, Merchant N. Characterizing the Pancreas as a Site for Islet Transplantation in Mice. J Surg Res 2010. [DOI: 10.1016/j.jss.2009.11.648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Affiliation(s)
- C. A. Rice
- Department of Chemistry, University of Basel, Klingelbergstrasse 80, CH-4056 Basel, Switzerland
| | - V. Rudnev
- Department of Chemistry, University of Basel, Klingelbergstrasse 80, CH-4056 Basel, Switzerland
| | - S. Chakrabarty
- Department of Chemistry, University of Basel, Klingelbergstrasse 80, CH-4056 Basel, Switzerland
| | - J. P. Maier
- Department of Chemistry, University of Basel, Klingelbergstrasse 80, CH-4056 Basel, Switzerland
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Chakrabarty S, Bharati P. Adult body dimension and determinants of chronic energy deficiency among the Shabar tribe living in urban, rural and forest habitats in Orissa, India. Ann Hum Biol 2009; 37:149-67. [DOI: 10.3109/03014460903234742] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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Banerjee SR, Chakrabarty S, Vasulu TS, Bharati S, Sinha D, Banerjee P, Bharati P. Growth and nutritional status of Bengali adolescent girls. Indian J Pediatr 2009; 76:391-9. [PMID: 19205646 DOI: 10.1007/s12098-009-0015-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/01/2007] [Accepted: 04/28/2008] [Indexed: 10/21/2022]
Abstract
OBJECTIVE Assessment of the growth and nutritional status among healthy Bengali adolescent schoolgirls at peri-urban area. METHODS In this cross sectional study, sample consists of 527 school going adolescent girls, aged 10 to 18 years. The sample of the present study was collected from a peri-urban area (Duttapukur) of north 24 parganas district of West Bengal, India. Standard anthropometric measurements including linear, curvilinear and skinfold thickness were collected from each subject. Percentile curves and nutritional indices were used to determine the growth and nutritional status respectively. RESULTS The nature of distance curves and percentile curves of the body measurements showed a high rate of increase in 10-11 years of age group corresponding to an earlier adolescent growth spurt than average Indian girls. The adolescent girls in the current study were found to be significantly (p<0.0001) taller than Indian girls and heavier than both Indian and urban Bengali girls but slightly shorter than urban Bengali girls. They are significantly (p<0.0001) shorter and lighter than American girls, which also corresponded to 50(th) percentile curves. Age specific nutritional assessment shows different grades of malnutrition among them. Gomez's classification indicates about 60 % to 70 % adolescent girls show either moderate to mild malnutrition during their growth period. Both the indices of Waterlow's classification show least percentage of least malnutrition among the girls. CONCLUSION The growth pattern and nutritional status observed among adolescent girls in peri-urban situation show heterogeneity with respect to some anthropometric traits and in conformity with the growth pattern and nutritional status of urban girls.
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Affiliation(s)
- S R Banerjee
- Islamia Hospital, 8 Jessore Road, Kolkata, India
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Chakrabarty S, Friel KM, Martin JH. Activity-dependent plasticity improves M1 motor representation and corticospinal tract connectivity. J Neurophysiol 2008; 101:1283-93. [PMID: 19091920 DOI: 10.1152/jn.91026.2008] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Motor cortex (M1) activity between postnatal weeks 5 and 7 is essential for normal development of the corticospinal tract (CST) and visually guided movements. Unilateral reversible inactivation of M1, by intracortical muscimol infusion, during this period permanently impairs development of the normal dorsoventral distribution of CST terminations and visually guided motor skills. These impairments are abrogated if this M1 inactivation is followed by inactivation of the contralateral, initially active M1, from weeks 7 to 11 (termed alternate inactivation). This later period is when the M1 motor representation normally develops. The purpose of this study was to determine the effects of alternate inactivation on the motor representation of the initially inactivated M1. We used intracortical microstimulation to map the left M1 1 to 2 mo after the end of left M1 muscimol infusion. We compared representations in the unilateral inactivation and alternate inactivation groups. Alternate inactivation converted the sparse proximal M1 motor representation produced by unilateral inactivation to a complete and high-resolution proximal-distal representation. The motor map was restored by week 11, the same age that our present and prior studies demonstrated that alternate inactivation restored CST spinal connectivity. Thus M1 motor map developmental plasticity closely parallels plasticity of CST spinal terminations. After alternate inactivation reestablished CST connections and the motor map, an additional 3 wk was required for motor skill recovery. Since motor map recovery preceded behavioral recovery, our findings suggest that the representation is necessary for recovering motor skills, but additional time, or experience, is needed to learn to take advantage of the restored CST connections and motor map.
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Affiliation(s)
- S Chakrabarty
- Department of Neuroscience, Columbia University, New York, NY, USA
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Medhi B, Prakash O, Jose VM, Pradhan B, Chakrabarty S, Pandhi P. Seasonal variation in plasma levels of lithium in the Indian population: is there a need to modify the dose? Singapore Med J 2008; 49:724-727. [PMID: 18830549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
INTRODUCTION Lithium still remains an important choice in the therapy of manic-depressive psychosis (MDP), and though there are reports of seasonal variation in lithium levels from a few countries, such studies have not been conducted in India. Variability in the lithium level can lead to lack of efficacy or toxicity, making seasonal variation clinically relevant. METHODS A retrospective case sheet audit was performed for 101 MDP patients for recording plasma lithium level, oral lithium dose, age and gender for one year. The overall average oral lithium dose and level were recorded; the monthly average to which it most closely matched was noted as the control month, and values of other months were compared with this control month by Friedman's test followed by Dunn's test. RESULTS The mean age of patients was 38.22 (standard deviation 12.07) years, and 72 out of 101 patients were male. The mean lithium dose in November (938.61 +/- 243.40 mg/day), which was the closest to the overall mean dose (938.24 +/- 241.78 mg/day) was taken as the control month, which when compared with other monthly values, did not show any significant difference. The June (0.54 +/- 0.23 meq/L), July (0.55 +/- 0.24 meq/L) and August (0.55 +/- 0.24 meq/L) mean plasma lithium values were significantly high when compared to the October value (0.45 +/- 0.22 meq/L) as control. High-low variability between the plasma lithium values of different months was found to be 25 percent. CONCLUSION The present study showed a significant high variability of lithium levels in different months of the year, therefore frequent plasma level monitoring and oral lithium dose adjustment to prevent situations of toxicity and lack of efficacy in MDP.
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Affiliation(s)
- B Medhi
- Department of Pharmacology, Postgraduate Institute of Medical Education & Research, Chandigarh 160012, India.
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Banerjee SR, Bharati P, Vasulu TS, Chakrabarty S, Banerjee P. Whole time domestic child labor in metropolitan city of Kolkata. Indian Pediatr 2008; 45:579-582. [PMID: 18695278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
We conducted this study to explore the socioeconomic conditions, and health and nutritional status of whole time child domestic labor. 330 children engaged in domestic child labor ranging between 8 to 14 years of age from the metropolitan city of Kolkata were studied. Majority of the domestic child laborers were girls and migrants coming from illiterate families. These children were physically, mentally or sexually abused. Further, they suffered from anemia, gastrointestinal tract infections, vitamin deficiencies, respiratory tract infections and skin diseases along with a high prevalence of malnutrition. The study highlights the poor state of domestic child labor in Kolkata, India.
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Affiliation(s)
- S R Banerjee
- Department of Pediatrics, Islamia Hospital, Kolkata, India.
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Chakrabarty S, Pal M, Bharati S, Bharati P. Body form and nutritional status among adult males of different social groups in Orissa and Bihar States in India. HOMO 2008; 59:235-51. [DOI: 10.1016/j.jchb.2008.04.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/12/2007] [Accepted: 11/01/2007] [Indexed: 10/22/2022]
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Aggelopoulos NC, Chakrabarty S, Edgley SA. Presynaptic control of transmission through group II muscle afferents in the midlumbar and sacral segments of the spinal cord is independent of corticospinal control. Exp Brain Res 2008; 187:61-70. [PMID: 18231783 PMCID: PMC2755734 DOI: 10.1007/s00221-008-1279-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2007] [Accepted: 01/10/2008] [Indexed: 11/26/2022]
Abstract
Transmission of information from the terminals group II muscle afferents is subject to potent presynaptic modulation by both segmental group II and cutaneous afferents and by descending monoaminergic systems. Currently it is unknown whether descending corticospinal fibres affect this transmission. Here we have examined whether corticospinal tract activation modulates the size of monosynaptic focal synaptic potentials (FSPs) evoked by group II muscle afferents, and the excitability of intraspinal terminals of group II afferents, both of which are indices used to show presynaptic control. Conditioning stimulation of corticospinal pathways had no effects on the sizes of group II evoked FSPs in the midlumbar or sacral segments at either dorsal horn or intermediate zone locations. These stimuli also had no effect on the excitability of single group II afferent terminals in the dorsal horn of the midlumbar segments. As positive controls, we verified that the corticospinal conditioning stimuli used did effectively depress FSPs evoked from cutaneous afferents recorded at the same spinal locations as the group II field potentials in all experiments. Corticospinal tract conditioning stimuli did not consistently enhance or reduce the depression of group II FSPs that was evoked by stimulation of ipsilateral segmental group II or cutaneous afferents; in the large majority of cases there was no effect. The results reveal that the control of transmission of information from group II afferents in these regions of the spinal cord is independent of direct corticospinal control.
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Affiliation(s)
- N. C. Aggelopoulos
- Department of Anatomy, University of Cambridge, Downing Street, Cambridge, CB2 3DY UK
- Max Planck Institute for Biological Cybernetics, Tuebingen, Germany
| | - S. Chakrabarty
- Department of Anatomy, University of Cambridge, Downing Street, Cambridge, CB2 3DY UK
- Centre for Neurobiology and Behaviour, Columbia University, New York, USA
| | - S. A. Edgley
- Department of Anatomy, University of Cambridge, Downing Street, Cambridge, CB2 3DY UK
- Department of Physiology Development and Neuroscience, University of Cambridge, Downing Street, Cambridge, CB2 3DY UK
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