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Mahmoud M, Huang Y, Garimella K, Audano PA, Wan W, Prasad N, Handsaker RE, Hall S, Pionzio A, Schatz MC, Talkowski ME, Eichler EE, Levy SE, Sedlazeck FJ. Utility of long-read sequencing for All of Us. Nat Commun 2024; 15:837. [PMID: 38281971 PMCID: PMC10822842 DOI: 10.1038/s41467-024-44804-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2022] [Accepted: 01/03/2024] [Indexed: 01/30/2024] Open
Abstract
The All of Us (AoU) initiative aims to sequence the genomes of over one million Americans from diverse ethnic backgrounds to improve personalized medical care. In a recent technical pilot, we compare the performance of traditional short-read sequencing with long-read sequencing in a small cohort of samples from the HapMap project and two AoU control samples representing eight datasets. Our analysis reveals substantial differences in the ability of these technologies to accurately sequence complex medically relevant genes, particularly in terms of gene coverage and pathogenic variant identification. We also consider the advantages and challenges of using low coverage sequencing to increase sample numbers in large cohort analysis. Our results show that HiFi reads produce the most accurate results for both small and large variants. Further, we present a cloud-based pipeline to optimize SNV, indel and SV calling at scale for long-reads analysis. These results lead to widespread improvements across AoU.
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Affiliation(s)
- M Mahmoud
- Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA
- Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA
| | - Y Huang
- Data Sciences Platform, Broad Institute of MIT and Harvard, Cambridge, MA, 02141, USA
| | - K Garimella
- Data Sciences Platform, Broad Institute of MIT and Harvard, Cambridge, MA, 02141, USA
| | - P A Audano
- The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA
| | - W Wan
- Data Sciences Platform, Broad Institute of MIT and Harvard, Cambridge, MA, 02141, USA
| | - N Prasad
- Discovery Life Sciences, Huntsville, AL, 35806, USA
| | - R E Handsaker
- Department of Genetics, Harvard Medical School, Boston, MA, USA
- Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, 02141, USA
| | - S Hall
- Discovery Life Sciences, Huntsville, AL, 35806, USA
| | - A Pionzio
- Discovery Life Sciences, Huntsville, AL, 35806, USA
| | - M C Schatz
- Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA
| | - M E Talkowski
- Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, 02141, USA
- Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, USA
| | - E E Eichler
- Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA
- Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA
| | - S E Levy
- HudsonAlpha Institute for Biotechnology, Huntsville, AL, 35806, USA
| | - F J Sedlazeck
- Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
- Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
- Department of Computer Science, Rice University, Houston, TX, USA.
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2
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Su W, Xu YT, Wang YN, Wu YY, Wan W, Gao WQ, Gao Y, Shi YY, Ma S. [Comparison of Disease Burden Factors of Thyroid Cancer Between China and the World From 1990 to 2019]. Zhongguo Yi Xue Ke Xue Yuan Xue Bao 2023; 45:940-948. [PMID: 38173105 DOI: 10.3881/j.issn.1000-503x.15738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/05/2024]
Abstract
Objective To compare the prevalence and disease burden of thyroid cancer and their trends between China and the globe from 1990 to 2019.Methods With the global disease burden data in 2019,Joinpoint was used to predict the trends of the disease burden of thyroid cancer in China and the globe from 1990 to 2019,and logarithmic linear model was used to test the predicted trends.The R language was used for predictive analysis and graphic plotting of the disease burden from 2020 to 2035.Results From 1990 to 2019,the standardized incidence rate and the standardized mortality rate of thyroid cancer in China were lower than those in the globe.The standardized incidence rate in China and the globe showed an increasing trend(with the increases of 102.65% and 40.65%,respectively),while the standardized mortality rate showed a decreasing trend(with the decreases of 7.63% and 4.91%,respectively).Compared with those of the female population,the standardized incidence and mortality rates of the Chinese male population increased significantly from 1990 to 2019(the rates of change in the male population were 48.65% and 214.60%,respectively;and the rates of change in the female population were -39.01% and 60.44%,respectively).China's overall standardized years of life lost(YLL),years lived with disability(YLD),and disability-adjusted life years(DALY)rates during the 30-year period were lower than the global average.The Chinese and global populations showed the standardized YLL rate decreasing by 16.61% and 6.88% and the standardized DALY rate decreasing by 10.77% and 3.65%,respectively,while the rates of standardized YLD increased by 128.91% and 46.89%,respectively.The magnitude of DALY in China and the world was mainly influenced by YLL.The standardized incidence,mortality,and DALY rates of the Chinese male population were gradually approaching the global levels.From 1990 and 2019,thyroid cancer showed a higher mortality rate in the population with the age ≥ 75 years and a higher incidence rate in the population with the age <75 years.It is projected that from 2020 to 2035,the standardized incidence rates in China and the world will increase by 36.66% and 21.15%,respectively;the standardized mortality rates will decrease by 20.19% and 3.46%,respectively;and the standardized DALY rate is expected to decrease by 7.08% in China and increase by 4.35% in the world.Conclusions From 1990 to 2019,China's standardized incidence rate of thyroid cancer increased and had a higher increase than the global level,and the standardized mortality rate decreased,with a slightly higher decrease than the global level.However,the increases in the standardized incidence rate and mortality rate of this disease in China's ≥75 years male population were severe.Although China's disease burden of thyroid cancer showed a decreasing trend in line with the global trend as a whole,the disease burden in the Chinese males was higher than that in the females.Specifically,the disease burden due to premature death was predominant,and the burden in specific populations requires policy attention.
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Affiliation(s)
- Wei Su
- School of Management,Beijing University of Chinese Medicine,Beijing 100029,China
| | - Yu-Tong Xu
- School of Management,Beijing University of Chinese Medicine,Beijing 100029,China
| | - Yi-Nuo Wang
- School of Management,Beijing University of Chinese Medicine,Beijing 100029,China
| | - Yan-Yu Wu
- School of Management,Beijing University of Chinese Medicine,Beijing 100029,China
| | - Wan Wan
- School of Management,Beijing University of Chinese Medicine,Beijing 100029,China
| | - Wen-Qing Gao
- School of Management,Beijing University of Chinese Medicine,Beijing 100029,China
| | - Yang Gao
- School of Management,Beijing University of Chinese Medicine,Beijing 100029,China
| | - Yu-Yun Shi
- School of Management,Beijing University of Chinese Medicine,Beijing 100029,China
| | - Shuang Ma
- School of Management,Beijing University of Chinese Medicine,Beijing 100029,China
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Tong L, Sun Y, Zhu Y, Luo H, Wan W, Wu Y. Prognostic estimation for acute ischemic stroke patients undergoing mechanical thrombectomy within an extended therapeutic window using an interpretable machine learning model. Front Neuroinform 2023; 17:1273827. [PMID: 37901289 PMCID: PMC10603294 DOI: 10.3389/fninf.2023.1273827] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Accepted: 10/02/2023] [Indexed: 10/31/2023] Open
Abstract
Background Mechanical thrombectomy (MT) is effective for acute ischemic stroke with large vessel occlusion (AIS-LVO) within an extended therapeutic window. However, successful reperfusion does not guarantee positive prognosis, with around 40-50% of cases yielding favorable outcomes. Preoperative prediction of patient outcomes is essential to identify those who may benefit from MT. Although machine learning (ML) has shown promise in handling variables with non-linear relationships in prediction models, its "black box" nature and the absence of ML models for extended-window MT prognosis remain limitations. Objective This study aimed to establish and select the optimal model for predicting extended-window MT outcomes, with the Shapley additive explanation (SHAP) approach used to enhance the interpretability of the selected model. Methods A retrospective analysis was conducted on 260 AIS-LVO patients undergoing extended-window MT. Selected patients were allocated into training and test sets at a 3:1 ratio following inclusion and exclusion criteria. Four ML classifiers and one logistic regression (Logit) model were constructed using pre-treatment variables from the training set. The optimal model was selected through comparative validation, with key features interpreted using the SHAP approach. The effectiveness of the chosen model was further evaluated using the test set. Results Of the 212 selected patients, 159 comprised the training and 53 the test sets. Extreme gradient boosting (XGBoost) showed the highest discrimination with an area under the curve (AUC) of 0.93 during validation, and maintained an AUC of 0.77 during testing. SHAP analysis identified ischemic core volume, baseline NHISS score, ischemic penumbra volume, ASPECTS, and patient age as the top five determinants of outcome prediction. Conclusion XGBoost emerged as the most effective for predicting the prognosis of AIS-LVO patients undergoing MT within the extended therapeutic window. SHAP interpretation improved its clinical confidence, paving the way for ML in clinical decision-making.
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Affiliation(s)
- Lin Tong
- Department of Radiology Intervention, Shanghai Putuo District Liqun Hospital, Shanghai, China
| | - Yun Sun
- Department of Emergency, Shanghai Putuo District Liqun Hospital, Shanghai, China
| | - Yueqi Zhu
- Institute of Diagnostic and Interventional Radiology, Shanghai Jiao Tong University Affiliated Sixth People’s Hospital, Shanghai, China
| | - Hui Luo
- Department of Emergency, Shanghai Putuo District Liqun Hospital, Shanghai, China
| | - Wan Wan
- Department of Radiology Intervention, Shanghai Putuo District Liqun Hospital, Shanghai, China
| | - Ying Wu
- Department of Emergency, Shanghai Putuo District Liqun Hospital, Shanghai, China
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Khavnekar S, Wan W, Majumder P, Wietrzynski W, Erdmann PS, Plitzko JM. Multishot tomography for high-resolution in situ subtomogram averaging. J Struct Biol 2023; 215:107911. [PMID: 36343843 DOI: 10.1016/j.jsb.2022.107911] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Revised: 09/29/2022] [Accepted: 10/17/2022] [Indexed: 11/06/2022]
Abstract
Cryo-electron tomography (cryo-ET) and subtomogram averaging (STA) can resolve protein complexes at near atomic resolution, and when combined with focused ion beam (FIB) milling, macromolecules can be observed within their native context. Unlike single particle acquisition (SPA), cryo-ET can be slow, which may reduce overall project throughput. We here propose a fast, multi-position tomographic acquisition scheme based on beam-tilt corrected beam-shift imaging along the tilt axis, which yields sub-nanometer in situ STA averages.
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Affiliation(s)
| | - W Wan
- Vanderbilt University, United States
| | | | | | - P S Erdmann
- MPI for Biochemistry, Germany; Human Technopole, Italy.
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Yu Y, Zhou W, Li Y, Wan W, Yao D, Wei X. Nuclear and Mitochondrial DNA Suggest That Nature Reserve Maintains Novel Haplotypes and Genetic Diversity of Honeybees (Apis cerana). RUSS J GENET+ 2022. [DOI: 10.1134/s1022795422120146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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Wu F, Tian J, She Z, Liu Y, Wan W, Wen C. [Clinical features of children with Cunninghamella spp. infection: a case report and literature review]. Nan Fang Yi Ke Da Xue Xue Bao 2022; 42:780-784. [PMID: 35673925 DOI: 10.12122/j.issn.1673-4254.2022.05.22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
We report a case of mucormycosis induced by Cunninghamella spp. infection in a ten-year-old girl with acute lymphoblastic leukemia, who developed fever and respiratory symptoms after chemotherapy and was diagnosed with invasive fungal disease. Peripheral blood DNA sequences were analyzed using metagenomic next-generation sequencing (mNGS), and by comparison with the Pathogens Metagenomics Database (PMDB), we identified Cunninghamella spp. with sequence number 514 as the pathogen. The patient was treated with amphotericin B combined with posaconazole and showed a favorable response. We searched Pubmed, Embase, CNKI, and Wanfang database for reports of cases of Cunninghamella spp. infection in children and retrieved 22 reported cases (including 12 males) with a median age of 13.5 (3-18) years. In these 22 cases, hematological malignancy was the most common underlying condition (19/22), and most of patients experienced an acute onset and rapid progression with respiratory symptoms (14/20) and fever (16/20) as the most common symptoms. CT imaging often showed unilateral lesions with varying imaging findings, including pulmonary nodules or masses, infiltrative changes, and pleural effusion. Definite diagnoses were established in 18 of the cases, and 4 had probable diagnoses; the lungs and skin were the most frequent organs compromised by the infection. A definite diagnosis of Cunninghamella spp. infection still relied on histopathological examination and fungal culture, but the molecular techniques including PCR and mNGS had shown potentials in the diagnosis. Almost all the cases received antifungal treatment after diagnosis (21/22), and 13 patients also underwent surgeries. Death occurred in 9 (42%) of the cases at a median of 19 (4-54) days after onset of the signs or symptoms. The patients receiving antifungal therapy combined with surgery had a high survival rate (9/13, 69%) than those with antifungal therapy alone (3/8, 37%). Invasive fungal disease is a common complication in immunoco-mpromised patients, but Cunninghamella spp. infection is rare and has a high mortality rate. In cases highly suspected of this disease, active diagnosis and early treatment are critical to improve the survival outcomes of the patients.
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Affiliation(s)
- F Wu
- Department of Pediatrics, Second Xiangya Hospital of Central South University, Changsha 410011, China
| | - J Tian
- Department of Pediatrics, Second Xiangya Hospital of Central South University, Changsha 410011, China
| | - Z She
- Department of Pediatrics, Second Xiangya Hospital of Central South University, Changsha 410011, China
| | - Y Liu
- Department of Pediatrics, Second Xiangya Hospital of Central South University, Changsha 410011, China
| | - W Wan
- Department of Pediatrics, Second Xiangya Hospital of Central South University, Changsha 410011, China
| | - C Wen
- Department of Pediatrics, Second Xiangya Hospital of Central South University, Changsha 410011, China
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Yu Y, Ran Y, Zhan H, Wan W, Shi L, Li M, Wei X. The Importance of Genetic Isolation in Preserving the Gene Pool of Apis cerana in Fanjingshan Nature Reserve. RUSS J GENET+ 2022. [DOI: 10.1134/s1022795422020144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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8
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Ding L, Zhou R, Yuan Y, Yang H, Li J, Yu T, Liu C, Wang J, Li S, Gao H, Deng Z, Li N, Wang Z, Gong Z, Liu G, Xie J, Wang S, Rong Z, Deng D, Wang X, Han S, Wan W, Richter L, Huang L, Gou S, Liu Z, Yu H, Jia Y, Chen B, Dang Z, Zhang K, Li L, He X, Liu S, Di K. A 2-year locomotive exploration and scientific investigation of the lunar farside by the Yutu-2 rover. Sci Robot 2022; 7:eabj6660. [PMID: 35044796 DOI: 10.1126/scirobotics.abj6660] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
The lunar nearside has been investigated by many uncrewed and crewed missions, but the farside of the Moon remains poorly known. Lunar farside exploration is challenging because maneuvering rovers with efficient locomotion in harsh extraterrestrial environment is necessary to explore geological characteristics of scientific interest. Chang'E-4 mission successfully targeted the Moon's farside and deployed a teleoperated rover (Yutu-2) to explore inside the Von Kármán crater, conveying rich information regarding regolith, craters, and rocks. Here, we report mobile exploration on the lunar farside with Yutu-2 over the initial 2 years. During its journey, Yutu-2 has experienced varying degrees of mild slip and skid, indicating that the terrain is relatively flat at large scales but scattered with local gentle slopes. Cloddy soil sticking on its wheels implies a greater cohesion of the lunar soil than encountered at other lunar landing sites. Further identification results indicate that the regolith resembles dry sand and sandy loam on Earth in bearing properties, demonstrating greater bearing strength than that identified during the Apollo missions. In sharp contrast to the sparsity of rocks along the traverse route, small fresh craters with unilateral moldable ejecta are abundant, and some of them contain high-reflectance materials at the bottom, suggestive of secondary impact events. These findings hint at notable differences in the surface geology between the lunar farside and nearside. Experience gained with Yutu-2 improves the understanding of the farside of the Moon, which, in return, may lead to locomotion with improved efficiency and larger range.
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Affiliation(s)
- L Ding
- State Key Laboratory of Robotics and System, Harbin Institute of Technology, Harbin 150080, China
| | - R Zhou
- State Key Laboratory of Robotics and System, Harbin Institute of Technology, Harbin 150080, China
| | - Y Yuan
- State Key Laboratory of Robotics and System, Harbin Institute of Technology, Harbin 150080, China
| | - H Yang
- State Key Laboratory of Robotics and System, Harbin Institute of Technology, Harbin 150080, China
| | - J Li
- Beijing Aerospace Control Center, Beijing 100094, China
| | - T Yu
- Beijing Aerospace Control Center, Beijing 100094, China
| | - C Liu
- Beijing Aerospace Control Center, Beijing 100094, China.,Key Laboratory of Science and Technology on Aerospace Flight Dynamics, Beijing 100094, China
| | - J Wang
- Beijing Aerospace Control Center, Beijing 100094, China
| | - S Li
- State Key Laboratory of Robotics and System, Harbin Institute of Technology, Harbin 150080, China
| | - H Gao
- State Key Laboratory of Robotics and System, Harbin Institute of Technology, Harbin 150080, China
| | - Z Deng
- State Key Laboratory of Robotics and System, Harbin Institute of Technology, Harbin 150080, China
| | - N Li
- State Key Laboratory of Robotics and System, Harbin Institute of Technology, Harbin 150080, China
| | - Z Wang
- State Key Laboratory of Robotics and System, Harbin Institute of Technology, Harbin 150080, China
| | - Z Gong
- State Key Laboratory of Robotics and System, Harbin Institute of Technology, Harbin 150080, China
| | - G Liu
- Department of Aerospace Engineering, Ryerson University, Toronto, ON M5B 2K3, Canada
| | - J Xie
- Beijing Aerospace Control Center, Beijing 100094, China
| | - S Wang
- Beijing Aerospace Control Center, Beijing 100094, China
| | - Z Rong
- Beijing Aerospace Control Center, Beijing 100094, China
| | - D Deng
- Beijing Aerospace Control Center, Beijing 100094, China
| | - X Wang
- Beijing Aerospace Control Center, Beijing 100094, China.,Key Laboratory of Science and Technology on Aerospace Flight Dynamics, Beijing 100094, China
| | - S Han
- Beijing Aerospace Control Center, Beijing 100094, China
| | - W Wan
- State Key Laboratory of Remote Sensing Science, Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing 100101, China
| | - L Richter
- Large Space Structures GmbH, Hauptstrasse 1, D-85386 Eching, Germany
| | - L Huang
- State Key Laboratory of Robotics and System, Harbin Institute of Technology, Harbin 150080, China
| | - S Gou
- State Key Laboratory of Remote Sensing Science, Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing 100101, China
| | - Z Liu
- State Key Laboratory of Robotics and System, Harbin Institute of Technology, Harbin 150080, China
| | - H Yu
- State Key Laboratory of Robotics and System, Harbin Institute of Technology, Harbin 150080, China
| | - Y Jia
- China Academy of Space Technology, Beijing 100094, China
| | - B Chen
- China Academy of Space Technology, Beijing 100094, China
| | - Z Dang
- China Academy of Space Technology, Beijing 100094, China
| | - K Zhang
- Beijing Aerospace Control Center, Beijing 100094, China
| | - L Li
- Beijing Aerospace Control Center, Beijing 100094, China
| | - X He
- Beijing Aerospace Control Center, Beijing 100094, China
| | - S Liu
- Beijing Aerospace Control Center, Beijing 100094, China
| | - K Di
- State Key Laboratory of Remote Sensing Science, Aerospace Information Research Institute, Chinese Academy of Sciences, Beijing 100101, China
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Qu L, Li Y, Xie P, Liu L, Wang Y, Wu J, Liu Y, Wang T, Li L, Guo K, Wan W, Ouyang L, Xiong F, Kolstad AC, Wu Z, Xu F, Zheng Y, Gong H, Luo Q, Bi G, Dong H, Hawrylycz M, Zeng H, Peng H. Cross-modal coherent registration of whole mouse brains. Nat Methods 2022; 19:111-118. [PMID: 34887551 DOI: 10.1038/s41592-021-01334-w] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Accepted: 10/28/2021] [Indexed: 01/04/2023]
Abstract
Recent whole-brain mapping projects are collecting large-scale three-dimensional images using modalities such as serial two-photon tomography, fluorescence micro-optical sectioning tomography, light-sheet fluorescence microscopy, volumetric imaging with synchronous on-the-fly scan and readout or magnetic resonance imaging. Registration of these multi-dimensional whole-brain images onto a standard atlas is essential for characterizing neuron types and constructing brain wiring diagrams. However, cross-modal image registration is challenging due to intrinsic variations of brain anatomy and artifacts resulting from different sample preparation methods and imaging modalities. We introduce a cross-modal registration method, mBrainAligner, which uses coherent landmark mapping and deep neural networks to align whole mouse brain images to the standard Allen Common Coordinate Framework atlas. We build a brain atlas for the fluorescence micro-optical sectioning tomography modality to facilitate single-cell mapping, and used our method to generate a whole-brain map of three-dimensional single-neuron morphology and neuron cell types.
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Affiliation(s)
- Lei Qu
- Ministry of Education Key Laboratory of Intelligent Computation & Signal Processing, Information Materials and Intelligent Sensing Laboratory of Anhui Province, School of Electronics and Information Engineering, Anhui University, Hefei, China
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
- Institute of Artificial Intelligence, Hefei Comprehensive National Science Center, Hefei, China
| | - Yuanyuan Li
- Ministry of Education Key Laboratory of Intelligent Computation & Signal Processing, Information Materials and Intelligent Sensing Laboratory of Anhui Province, School of Electronics and Information Engineering, Anhui University, Hefei, China
| | - Peng Xie
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Lijuan Liu
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
- Ministry of Education Key Laboratory of Developmental Genes and Human Disease, School of Life Science and Technology, Southeast University, Nanjing, China
| | - Yimin Wang
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
- School of Computer Engineering and Science, Shanghai University, Shanghai, China
| | - Jun Wu
- Ministry of Education Key Laboratory of Intelligent Computation & Signal Processing, Information Materials and Intelligent Sensing Laboratory of Anhui Province, School of Electronics and Information Engineering, Anhui University, Hefei, China
| | - Yu Liu
- Ministry of Education Key Laboratory of Intelligent Computation & Signal Processing, Information Materials and Intelligent Sensing Laboratory of Anhui Province, School of Electronics and Information Engineering, Anhui University, Hefei, China
| | - Tao Wang
- Ministry of Education Key Laboratory of Intelligent Computation & Signal Processing, Information Materials and Intelligent Sensing Laboratory of Anhui Province, School of Electronics and Information Engineering, Anhui University, Hefei, China
| | - Longfei Li
- Ministry of Education Key Laboratory of Intelligent Computation & Signal Processing, Information Materials and Intelligent Sensing Laboratory of Anhui Province, School of Electronics and Information Engineering, Anhui University, Hefei, China
| | - Kaixuan Guo
- Ministry of Education Key Laboratory of Intelligent Computation & Signal Processing, Information Materials and Intelligent Sensing Laboratory of Anhui Province, School of Electronics and Information Engineering, Anhui University, Hefei, China
| | - Wan Wan
- Ministry of Education Key Laboratory of Intelligent Computation & Signal Processing, Information Materials and Intelligent Sensing Laboratory of Anhui Province, School of Electronics and Information Engineering, Anhui University, Hefei, China
| | - Lei Ouyang
- Ministry of Education Key Laboratory of Intelligent Computation & Signal Processing, Information Materials and Intelligent Sensing Laboratory of Anhui Province, School of Electronics and Information Engineering, Anhui University, Hefei, China
| | - Feng Xiong
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Anna C Kolstad
- Department of Cell, Developmental & Regenerative Biology, Icahn School of Medicine at Mount Sinai, New York, NY, USA
| | - Zhuhao Wu
- Department of Cell, Developmental & Regenerative Biology, Icahn School of Medicine at Mount Sinai, New York, NY, USA
- Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, USA
| | - Fang Xu
- CAS Key Laboratory of Brain Connectome and Manipulation, Interdisciplinary Center for Brain Information, The Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions, Shenzhen, China
| | | | - Hui Gong
- Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology, Wuhan, China
- HUST-Suzhou Institute for Brainsmatics, JITRI Institute for Brainsmatics, Suzhou, China
- CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Science, Shanghai, China
| | - Qingming Luo
- Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology, Wuhan, China
- HUST-Suzhou Institute for Brainsmatics, JITRI Institute for Brainsmatics, Suzhou, China
- CAS Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Science, Shanghai, China
- School of Biomedical Engineering, Hainan University, Haikou, China
| | - Guoqiang Bi
- Institute of Artificial Intelligence, Hefei Comprehensive National Science Center, Hefei, China
- CAS Key Laboratory of Brain Connectome and Manipulation, Interdisciplinary Center for Brain Information, The Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions, Shenzhen, China
- Center for Integrative Imaging, Hefei National Laboratory for Physical Sciences at the Microscale, and School of Life Sciences, University of Science and Technology of China, Hefei, China
| | - Hongwei Dong
- Center for Integrative Connectomics, Department of Neurobiology, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA
| | | | - Hongkui Zeng
- Allen Institute for Brain Science, Seattle, WA, USA
| | - Hanchuan Peng
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China.
- Allen Institute for Brain Science, Seattle, WA, USA.
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11
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Deng Y, Yang J, Wan W. Embodied metaphor in communication about lived experiences of the COVID-19 pandemic in Wuhan, China. PLoS One 2021; 16:e0261968. [PMID: 34968400 PMCID: PMC8718003 DOI: 10.1371/journal.pone.0261968] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Accepted: 12/14/2021] [Indexed: 11/18/2022] Open
Abstract
The study investigated how a group of 27 Wuhan citizens employed metaphors to communicate about their lived experiences of the Corona Virus Disease 2019 (COVID-19) pandemic through in-depth individual interviews. The analysis of metaphors reflected the different kinds of emotional states and psychological conditions of the research participants, focusing on their mental imagery of COVID-19, extreme emotional experiences, and symbolic behaviors under the pandemic. The results show that multiple metaphors were used to construe emotionally-complex, isolating experiences of the COVID-19 pandemic. Most metaphorical narratives were grounded in embodied sensorimotor experiences such as body parts, battling, hitting, weight, temperature, spatialization, motion, violence, light, and journeys. Embodied metaphors were manifested in both verbal expressions and nonlinguistic behaviors (e.g., patients' repetitive behaviors). These results suggest that the bodily experiences of the pandemic, the environment, and the psychological factors combine to shape people's metaphorical thinking processes.
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Affiliation(s)
- Yu Deng
- College of Language Intelligence, Sichuan International Studies University, Chongqing, China
| | - Jixue Yang
- School of English Studies, Sichuan International Studies University, Chongqing, China
| | - Wan Wan
- College of Foreign Languages, Huaqiao University, Quanzhou, Fujian, China
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Chen S, Yang M, Zhong N, Yu D, Jian J, Jiang D, Xiao Y, Wei W, Wang T, Lou Y, Zhou Z, Xu W, Wan W, Wu Z, Wei H, Liu T, Zhao J, Yang X, Xiao J. Quantified CIN Score From Cell-free DNA as a Novel Noninvasive Predictor of Survival in Patients With Spinal Metastasis. Front Cell Dev Biol 2021; 9:767340. [PMID: 34957099 PMCID: PMC8696126 DOI: 10.3389/fcell.2021.767340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Accepted: 10/18/2021] [Indexed: 11/13/2022] Open
Abstract
Purpose: Most currently available scores for survival prediction of patients with bone metastasis lack accuracy. In this study, we present a novel quantified CIN (Chromosome Instability) score modeled from cfDNA copy number variation (CNV) for survival prediction. Experimental Design: Plasma samples collected from 67 patients with bone metastases from 11 different cancer types between November 2015 and May 2016 were sent through low-coverage whole genome sequencing followed by CIN computation to make a correlation analysis between the CIN score and survival prognosis. The results were validated in an independent cohort of 213 patients. Results: During the median follow-up period of 598 (95% CI 364-832) days until December 25, 2018, 124 (44.3%) of the total 280 patients died. Analysis of the discovery dataset showed that CIN score = 12 was the optimal CIN cutoff. Validation dataset showed that CIN was elevated (score ≥12) in 87 (40.8%) patients, including 5 (5.75%) with head and neck cancer, 11 (12.6%) with liver and gallbladder cancer, 11 (12.6%) with cancer from unidentified sites, 21 (24.1%) with lung cancer, 7 (8.05%) with breast cancer, 4 (4.60%) with thyroid cancer, 6 (6.90%) with colorectal cancer, 4 (4.60%) with kidney cancer, 2 (2.30%) with prostate cancer, and 16 (18.4%) with other types of cancer. Further analysis showed that patients with elevated CIN were associated with worse survival (p < 0.001). For patients with low Tokuhashi score (≤8) who had predictive survival of less than 6 months, the CIN score was able to distinguish patients with a median overall survival (OS) of 443 days (95% CI 301-585) from those with a median OS of 258 days (95% CI 184-332). Conclusion: CNV examination in bone metastatic cancer from cfDNA is superior to the traditional predictive model in that it provides a noninvasive and objective method of monitoring the survival of patients with spine metastasis.
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Affiliation(s)
- Su Chen
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai, China
| | - Minglei Yang
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai, China
| | - Nanzhe Zhong
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai, China
| | - Dong Yu
- Center of Translational Medicine, Naval Medical University, Shanghai, China
| | - Jiao Jian
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai, China
| | - Dongjie Jiang
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai, China
| | - Yasong Xiao
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai, China
| | - Wei Wei
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai, China
| | | | - Yan Lou
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai, China
| | - Zhenhua Zhou
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai, China
| | - Wei Xu
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai, China
| | - Wan Wan
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai, China
| | - Zhipeng Wu
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai, China
| | - Haifeng Wei
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai, China
| | - Tielong Liu
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai, China
| | - Jian Zhao
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai, China
| | - Xinghai Yang
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai, China
| | - Jianru Xiao
- Department of Orthopedic Oncology, Changzheng Hospital, Naval Medical University, Shanghai, China
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Peng H, Xie P, Liu L, Kuang X, Wang Y, Qu L, Gong H, Jiang S, Li A, Ruan Z, Ding L, Yao Z, Chen C, Chen M, Daigle TL, Dalley R, Ding Z, Duan Y, Feiner A, He P, Hill C, Hirokawa KE, Hong G, Huang L, Kebede S, Kuo HC, Larsen R, Lesnar P, Li L, Li Q, Li X, Li Y, Li Y, Liu A, Lu D, Mok S, Ng L, Nguyen TN, Ouyang Q, Pan J, Shen E, Song Y, Sunkin SM, Tasic B, Veldman MB, Wakeman W, Wan W, Wang P, Wang Q, Wang T, Wang Y, Xiong F, Xiong W, Xu W, Ye M, Yin L, Yu Y, Yuan J, Yuan J, Yun Z, Zeng S, Zhang S, Zhao S, Zhao Z, Zhou Z, Huang ZJ, Esposito L, Hawrylycz MJ, Sorensen SA, Yang XW, Zheng Y, Gu Z, Xie W, Koch C, Luo Q, Harris JA, Wang Y, Zeng H. Morphological diversity of single neurons in molecularly defined cell types. Nature 2021; 598:174-181. [PMID: 34616072 PMCID: PMC8494643 DOI: 10.1038/s41586-021-03941-1] [Citation(s) in RCA: 136] [Impact Index Per Article: 45.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2020] [Accepted: 08/24/2021] [Indexed: 12/23/2022]
Abstract
Dendritic and axonal morphology reflects the input and output of neurons and is a defining feature of neuronal types1,2, yet our knowledge of its diversity remains limited. Here, to systematically examine complete single-neuron morphologies on a brain-wide scale, we established a pipeline encompassing sparse labelling, whole-brain imaging, reconstruction, registration and analysis. We fully reconstructed 1,741 neurons from cortex, claustrum, thalamus, striatum and other brain regions in mice. We identified 11 major projection neuron types with distinct morphological features and corresponding transcriptomic identities. Extensive projectional diversity was found within each of these major types, on the basis of which some types were clustered into more refined subtypes. This diversity follows a set of generalizable principles that govern long-range axonal projections at different levels, including molecular correspondence, divergent or convergent projection, axon termination pattern, regional specificity, topography, and individual cell variability. Although clear concordance with transcriptomic profiles is evident at the level of major projection type, fine-grained morphological diversity often does not readily correlate with transcriptomic subtypes derived from unsupervised clustering, highlighting the need for single-cell cross-modality studies. Overall, our study demonstrates the crucial need for quantitative description of complete single-cell anatomy in cell-type classification, as single-cell morphological diversity reveals a plethora of ways in which different cell types and their individual members may contribute to the configuration and function of their respective circuits.
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Affiliation(s)
- Hanchuan Peng
- Allen Institute for Brain Science, Seattle, WA, USA.
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China.
| | - Peng Xie
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Lijuan Liu
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
- Ministry of Education Key Laboratory of Developmental Genes and Human Disease, School of Life Science and Technology, Southeast University, Nanjing, China
| | - Xiuli Kuang
- School of Optometry and Ophthalmology, Wenzhou Medical University, Wenzhou, China
| | - Yimin Wang
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
- School of Computer Engineering and Science, Shanghai University, Shanghai, China
| | - Lei Qu
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
- Key Laboratory of Intelligent Computation and Signal Processing, Ministry of Education, Anhui University, Hefei, China
| | - Hui Gong
- Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology, Wuhan, China
- HUST-Suzhou Institute for Brainsmatics, JITRI Institute for Brainsmatics, Suzhou, China
| | - Shengdian Jiang
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Anan Li
- Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology, Wuhan, China
- HUST-Suzhou Institute for Brainsmatics, JITRI Institute for Brainsmatics, Suzhou, China
| | - Zongcai Ruan
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Liya Ding
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Zizhen Yao
- Allen Institute for Brain Science, Seattle, WA, USA
| | - Chao Chen
- School of Optometry and Ophthalmology, Wenzhou Medical University, Wenzhou, China
| | - Mengya Chen
- School of Computer Engineering and Science, Shanghai University, Shanghai, China
| | | | | | - Zhangcan Ding
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Yanjun Duan
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Aaron Feiner
- Allen Institute for Brain Science, Seattle, WA, USA
| | - Ping He
- School of Computer Engineering and Science, Shanghai University, Shanghai, China
| | - Chris Hill
- Allen Institute for Brain Science, Seattle, WA, USA
| | - Karla E Hirokawa
- Allen Institute for Brain Science, Seattle, WA, USA
- Cajal Neuroscience, Seattle, WA, USA
| | - Guodong Hong
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
- Ministry of Education Key Laboratory of Developmental Genes and Human Disease, School of Life Science and Technology, Southeast University, Nanjing, China
| | - Lei Huang
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Sara Kebede
- Allen Institute for Brain Science, Seattle, WA, USA
| | | | | | - Phil Lesnar
- Allen Institute for Brain Science, Seattle, WA, USA
| | - Longfei Li
- Key Laboratory of Intelligent Computation and Signal Processing, Ministry of Education, Anhui University, Hefei, China
| | - Qi Li
- School of Computer Engineering and Science, Shanghai University, Shanghai, China
| | - Xiangning Li
- Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology, Wuhan, China
- HUST-Suzhou Institute for Brainsmatics, JITRI Institute for Brainsmatics, Suzhou, China
| | - Yaoyao Li
- School of Optometry and Ophthalmology, Wenzhou Medical University, Wenzhou, China
| | - Yuanyuan Li
- Key Laboratory of Intelligent Computation and Signal Processing, Ministry of Education, Anhui University, Hefei, China
| | - An Liu
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
- Ministry of Education Key Laboratory of Developmental Genes and Human Disease, School of Life Science and Technology, Southeast University, Nanjing, China
| | | | | | - Lydia Ng
- Allen Institute for Brain Science, Seattle, WA, USA
| | - Thuc Nghi Nguyen
- Allen Institute for Brain Science, Seattle, WA, USA
- Cajal Neuroscience, Seattle, WA, USA
| | - Qiang Ouyang
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Jintao Pan
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Elise Shen
- Allen Institute for Brain Science, Seattle, WA, USA
| | - Yuanyuan Song
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | | | | | - Matthew B Veldman
- Center for Neurobehavioral Genetics, Jane and Terry Semel Institute for Neuroscience and Human Behavior, Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
| | | | - Wan Wan
- Key Laboratory of Intelligent Computation and Signal Processing, Ministry of Education, Anhui University, Hefei, China
| | - Peng Wang
- School of Computer Engineering and Science, Shanghai University, Shanghai, China
| | - Quanxin Wang
- Allen Institute for Brain Science, Seattle, WA, USA
| | - Tao Wang
- Key Laboratory of Intelligent Computation and Signal Processing, Ministry of Education, Anhui University, Hefei, China
| | - Yaping Wang
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Feng Xiong
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Wei Xiong
- School of Optometry and Ophthalmology, Wenzhou Medical University, Wenzhou, China
| | - Wenjie Xu
- Allen Institute for Brain Science, Seattle, WA, USA
| | - Min Ye
- School of Optometry and Ophthalmology, Wenzhou Medical University, Wenzhou, China
| | - Lulu Yin
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Yang Yu
- Allen Institute for Brain Science, Seattle, WA, USA
| | - Jia Yuan
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
- Ministry of Education Key Laboratory of Developmental Genes and Human Disease, School of Life Science and Technology, Southeast University, Nanjing, China
| | - Jing Yuan
- Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology, Wuhan, China
- HUST-Suzhou Institute for Brainsmatics, JITRI Institute for Brainsmatics, Suzhou, China
| | - Zhixi Yun
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Shaoqun Zeng
- Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology, Wuhan, China
| | - Shichen Zhang
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Sujun Zhao
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Zijun Zhao
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Zhi Zhou
- Allen Institute for Brain Science, Seattle, WA, USA
| | - Z Josh Huang
- Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
- Department of Neurobiology, Duke University School of Medicine, Durham, NC, USA
| | | | | | | | - X William Yang
- Center for Neurobehavioral Genetics, Jane and Terry Semel Institute for Neuroscience and Human Behavior, Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
| | | | - Zhongze Gu
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
| | - Wei Xie
- SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, China
- Ministry of Education Key Laboratory of Developmental Genes and Human Disease, School of Life Science and Technology, Southeast University, Nanjing, China
| | | | - Qingming Luo
- Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology, Wuhan, China
- School of Biomedical Engineering, Hainan University, Haikou, China
| | - Julie A Harris
- Allen Institute for Brain Science, Seattle, WA, USA
- Cajal Neuroscience, Seattle, WA, USA
| | - Yun Wang
- Allen Institute for Brain Science, Seattle, WA, USA
| | - Hongkui Zeng
- Allen Institute for Brain Science, Seattle, WA, USA.
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Chen C, Yang S, Jiang Z, Wan W, Zou H, Liang M. POS0884 THE ENHANCED LIVER FIBROSIS (ELF) SCORE AS A BIOMARKER OF SKIN FIBROSIS IN SYSTEMIC SCLEROSIS. Ann Rheum Dis 2021. [DOI: 10.1136/annrheumdis-2021-eular.3648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Background:Serum fibrotic markers for systemic sclerosis (SSc) remain limited. The Enhanced Liver Fibrosis (ELF) score, originally derived and validated in patients with chronic liver disease, is an algorithm combining 3 serum markers, known as procollagen type III amino terminal propeptide (PIIINP), tissue inhibitor of metalloproteinases 1 (TIMP-1), and hyaluronic acid (HA). The combined score was proved to be superior to the single components in reflecting the severity of liver fibrosis. However, the performance of ELF score and its components has not been fully validated in SSc.Objectives:To investigate PIIINP, TIMP-1, HA, and the combined algorithm ELF score as fibrotic markers for SSc skin involvement.Methods:Eighty SSc patients (44 dcSSc and 36 lcSSc), fulfilling the 2013 ACR/EULAR criteria with the absence of chronic liver diseases, were enrolled. Eighty age- and sex- matched healthy controls were also included. Serum PIIINP and HA levels were quantified by chemiluminescence immunoassay. Serum TIMP-1 levels were determined by enzyme-linked immunosorbent assay. The ELF score was calculated using the formula ELF score= 2.494 + 0.846*ln(HA) + 0.735*ln(PIIINP) + 0.391*ln(TIMP-1). Results were correlated with clinical profiles including modified Rodnan skin score (mRSS) and interstitial lung disease (ILD).Results:Compared with healthy controls, patients with SSc showed significantly elevated serum PIIINP (11.2±4.8 vs. 5.73±1.4μg/L, p<0.001), TIMP-I (123.7±78.6 vs. 67.8±26.5 ng/ml, p<0.001), and ELF score (10.5±0.9 vs. 9.7±0.4, P<0.001). Even higher levels of PIIINP, TIMP-1, and ELF score were observed in dcSSc patients, compared with lcSSc patients (p<0.001, p=0.024, p=0.003, respectively). No significant difference was found in the levels of serum HA between patients and controls. Strong correlations were observed between mRSS and ELF score (r=0.54, p<0.001), and between mRSS and PIIINP(r=0.62, p<0.001), whereas only weak correlations could be observed between mRSS and TIMP-1 (r=0.28, p=0.02), and between mRSS and HA (r=0.26, p=0.03). When stratified by ELF score, using cutoffs proposed for liver fibrosis and cirrhosis, SSc patients with ELF<9.8 showed the lowest mRSS on average, while patients with ELF>11.3 showed the highest (p<0.001). When stratified by serum PIIINP levels, using the 25th and 75th percentiles, SSc patients with serum PIIIINP levels<7.8μg/L showed the lowest mRSS on average, while patients with PIIINP>14.0μg/L showed the highest (p<0.001). Neither the ELF score nor its components showed significant difference between patients with and without ILD.Conclusion:The ELF score could be used for reflecting the severity of overall skin involvement in SSc, and serum PIIINP also increased in parallel with the increase of mRSS. Longitudinal prospective studies exploring ELF score or serum PIIINP as fibrotic markers and outcome measures of SSc are warranted.References:[1]Lichtinghagen R, Pietsch D, Bantel H, et al. The Enhanced Liver Fibrosis (ELF) score: Normal values, influence factors and proposed cut-off values. Journal of Hepatology. 2013; 59: 236-42.[2]Abignano G, Blagojevic J, Bissell LA, et al. European multicentre study validates enhanced liver fibrosis test as biomarker of fibrosis in systemic sclerosis. Rheumatology. 2019; 58: 254-59.Figure 1.Correlations of mRSS with ELF score (A) and serum PIIINP (B) and distribution of mRSS among different ELF (C) and PIIINP (D) ranges.Acknowledgements:The authors have no acknowledgements to declare.Disclosure of Interests:None declared
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Chen C, Yang S, Jiang Z, Wan W, Zou H, Liang M. POS0869 PREDICTIVE VALUE OF ANTI-INTERFERON-INDUCIBLE PROTEIN 16 ANTIBODIES FOR DIGITAL ULCERS OF SYSTEMIC SCLEROSIS. Ann Rheum Dis 2021. [DOI: 10.1136/annrheumdis-2021-eular.3058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Background:Interferon-inducible protein 16 (IFI-16) is constitutively expressed in vascular endothelial cells and can inhibit the proliferation of human endothelial cells and the formation of capillary-like structures in vitro. Anti-IFI-16 antibodies were reported in 21%-29% of patients with systemic sclerosis (SSc) and were associated with digital vascular events in a few retrospective studies.Objectives:To evaluate the presence and the clinical implication of anti-IFI-16 antibodies in Chinese SSc cohort, focusing on the associations with vasculopathy indexes, and to investigate the predictive value of anti-IFI-16 antibodies for the development of digital ulcers (DUs) in SSc prospectively.Methods:Patients with SSc presenting to our center between July 2018 and September 2018 were prospectively enrolled. Serum from 42 SSc patients and 42 age- and sex-matched healthy controls were analyzed for anti-IFI-16 antibodies by enzyme-linked immunosorbent assay (ELISA), and was considered positive if the optical density (OD) value was above the mean OD of controls plus two standard deviations. Tissue immunofluorescence was used to evaluate the expression of IFI16 in skin biopsy samples obtained from SSc patients and normal controls. At baseline, nailfold video-capillaroscopy was performed to assess nailfold capillary density of SSc patients. Power Doppler ultrasound was used to grade finger pulp blood flow (0-no observed flow; 1-decreased flow; 2-normal flow), and to measure ulnar and radial artery blood flow and resistive index (RI). All patients were followed up for 6 months to see whether they experienced new onset or recurrent DUs. The association of anti-IFI-16 antibodies with DUs was analyzed using logistic regression.Results:Of the 42 SSc patients, 8 (19.0%) were positive for anti-IFI-16 antibodies. Immunofluorescence of skin biopsy samples from SSc patients exhibited enhanced staining of IFI-16 in the dermis, and colocalization with endothelial marker CD31. SSc patients who were positive for anti-IFI-16 antibodies showed higher ulnar artery RI at baseline (0.95±0.09 vs. 0.86±0.09, p=0.015), while no significant differences were found for other vascular parameters, nor for clinical or demographic profiles. Within 6-month follow-up, 14 (33.3%) patients experienced new-onset or recurrent DUs. Univariate logistic regression revealed the presence of DUs at enrollment (p=0.009), anti-IFI-16 antibody (p=0.012), finger pulp blood flow (p=0.027), and ulnar artery RI (p=0.008) could be the predictors for the development of DUs. Multivariate analysis further identified DUs at enrollment (odds ratio [OR]: 10.85; 95% confidence interval [CI]: 1.61-73.18; p=0.014) and anti-IFI-16 antibody (OR: 15.00; 95% CI: 1.13-199.18; p=0.040) as independent risk factors. Among patients without DUs at enrollment, new-onset ulcers occurred in 80% (4/5) and 4.5% (1/22) of those with and without anti-IFI-16 antibody, respectively (p=0.001).Conclusion:Anti-IFI-16 antibody is associated with vasculopathy in SSc and could be used as a novel biomarker for indicating the development of DUs.References:[1]McMahan ZH, Shah AA, Vaidya D, et al. Anti-interferon-inducible protein 16 antibodies associate with digital gangrene in patients with Scleroderma. Arthritis Rheumatol. 2016; 68(5): 1262-71.[2]McMahan ZH, Cottrell TR, Wigley FM, et al. Autoantigens targeted in scleroderma patients with vascular disease are enriched in endothelial lineage cells. Arthritis Rheumatol. 2016; 68(10): 2540–49.Figure 1.Multivariate logistic analysis for new or recurrent digital ulcers.Acknowledgements:The authors would like to thank Doctor Yi Cheng for performing Power Doppler ultrasound assessment.Disclosure of Interests:None declared
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Zhang L, Sun Z, Fu X, Wan W, Ge J, Xia Y, Xu D, Nan F, Yu H, Zhang M, Li L, Li X, Li Z, Wang X, Chang Y, Yan J, Wu X, Zhou Z. THE SURVIVAL OF 2852 PATIENTS WITH LYMPHOMA: A SINGLE CENTER STUDY FROM CHINA. Hematol Oncol 2021. [DOI: 10.1002/hon.109_2881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- L. Zhang
- The First Affiliated Hospital of Zhengzhou University Department of Oncology Zhengzhou China
| | - Z. Sun
- The First Affiliated Hospital of Zhengzhou University Department of Oncology Zhengzhou China
| | - X. Fu
- The First Affiliated Hospital of Zhengzhou University Department of Oncology Zhengzhou China
| | - W. Wan
- The First Affiliated Hospital of Zhengzhou University Department of Oncology Zhengzhou China
| | - J. Ge
- The First Affiliated Hospital of Zhengzhou University Department of Oncology Zhengzhou China
| | - Y. Xia
- The First Affiliated Hospital of Zhengzhou University Department of Oncology Zhengzhou China
| | - D. Xu
- The First Affiliated Hospital of Zhengzhou University Department of Oncology Zhengzhou China
| | - F. Nan
- The First Affiliated Hospital of Zhengzhou University Department of Oncology Zhengzhou China
| | - H. Yu
- The First Affiliated Hospital of Zhengzhou University Department of Oncology Zhengzhou China
| | - M. Zhang
- The First Affiliated Hospital of Zhengzhou University Department of Oncology Zhengzhou China
| | - L. Li
- The First Affiliated Hospital of Zhengzhou University Department of Oncology Zhengzhou China
| | - X. Li
- The First Affiliated Hospital of Zhengzhou University Department of Oncology Zhengzhou China
| | - Z. Li
- The First Affiliated Hospital of Zhengzhou University Department of Oncology Zhengzhou China
| | - X. Wang
- The First Affiliated Hospital of Zhengzhou University Department of Oncology Zhengzhou China
| | - Y. Chang
- The First Affiliated Hospital of Zhengzhou University Department of Oncology Zhengzhou China
| | - J. Yan
- The First Affiliated Hospital of Zhengzhou University Department of Oncology Zhengzhou China
| | - X. Wu
- The First Affiliated Hospital of Zhengzhou University Department of Oncology Zhengzhou China
| | - Z. Zhou
- The First Affiliated Hospital of Zhengzhou University Department of Oncology Zhengzhou China
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Xin L, Wan W, Yu Y, Wan Q, Ma L, Huang X. Construction of Protoberberine Alkaloid Core through Palladium Carbene Bridging C–H Bond Functionalization and Pyridine Dearomatization. ACS Catal 2021. [DOI: 10.1021/acscatal.0c05156] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Luoting Xin
- Key Laboratory of Coal to Ethylene Glycol and Its Related Technology, Center for Excellence in Molecular Synthesis, Fujian Institute of Research on the Structure of Matter, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Fuzhou, Fujian 350002, China
| | - Wan Wan
- Key Laboratory of Coal to Ethylene Glycol and Its Related Technology, Center for Excellence in Molecular Synthesis, Fujian Institute of Research on the Structure of Matter, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Fuzhou, Fujian 350002, China
| | - Yinghua Yu
- Key Laboratory of Coal to Ethylene Glycol and Its Related Technology, Center for Excellence in Molecular Synthesis, Fujian Institute of Research on the Structure of Matter, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Fuzhou, Fujian 350002, China
| | - Qiuling Wan
- Key Laboratory of Coal to Ethylene Glycol and Its Related Technology, Center for Excellence in Molecular Synthesis, Fujian Institute of Research on the Structure of Matter, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Fuzhou, Fujian 350002, China
| | - Liyao Ma
- Key Laboratory of Coal to Ethylene Glycol and Its Related Technology, Center for Excellence in Molecular Synthesis, Fujian Institute of Research on the Structure of Matter, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Fuzhou, Fujian 350002, China
| | - Xueliang Huang
- Key Laboratory of Coal to Ethylene Glycol and Its Related Technology, Center for Excellence in Molecular Synthesis, Fujian Institute of Research on the Structure of Matter, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Fuzhou, Fujian 350002, China
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Ministry of Education of China, Key Laboratory of the Assembly and Application of Organic Functional Molecules of Hunan Province, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, Hunan 410081, China
- State Key Laboratory of Elemento-Organic Chemistry, Nankai University, Tianjin 300071, China
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19
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Li J, Triana CA, Wan W, Adiyeri Saseendran DP, Zhao Y, Balaghi SE, Heidari S, Patzke GR. Molecular and heterogeneous water oxidation catalysts: recent progress and joint perspectives. Chem Soc Rev 2021; 50:2444-2485. [DOI: 10.1039/d0cs00978d] [Citation(s) in RCA: 51] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
The recent synthetic and mechanistic progress in molecular and heterogeneous water oxidation catalysts highlights the new, overarching strategies for knowledge transfer and unifying design concepts.
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Affiliation(s)
- J. Li
- Department of Chemistry
- University of Zurich
- CH-8057 Zurich
- Switzerland
| | - C. A. Triana
- Department of Chemistry
- University of Zurich
- CH-8057 Zurich
- Switzerland
| | - W. Wan
- Department of Chemistry
- University of Zurich
- CH-8057 Zurich
- Switzerland
| | | | - Y. Zhao
- Department of Chemistry
- University of Zurich
- CH-8057 Zurich
- Switzerland
| | - S. E. Balaghi
- Department of Chemistry
- University of Zurich
- CH-8057 Zurich
- Switzerland
| | - S. Heidari
- Department of Chemistry
- University of Zurich
- CH-8057 Zurich
- Switzerland
| | - G. R. Patzke
- Department of Chemistry
- University of Zurich
- CH-8057 Zurich
- Switzerland
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20
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21
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Xu F, Chen R, Ma C, Tang L, Wan W, You F, Chen L, Li J, Chen Z, Liang F. ELECTROACUPUNCTURE IMPROVES INSULIN SENSITIVITY IN HIGH-FAT DIET-INDUCED INSULIN RESISTANT RATS BY ACTIVATING SIRT1 AND GLUT4 IN QUADRICEPS FEMORIS. Acta Endocrinol (Buchar) 2020; 16:280-287. [PMID: 33363647 PMCID: PMC7748239 DOI: 10.4183/aeb.2020.280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
OBJECTIVES To assess the effects of electroacupuncture (EA) at the Zusanli (ST36), Guanyuan (CV4), Zhongwan (CV12), and Fenglong (ST40) acupoints on sirtuin 1 (SIRT1) and glucose transporter type 4 (GLUT4) expression in high-fat diet (HFD)-induced insulin-resistant (IR) rats. METHODS Wistar rats were divided into normal control (NC), HFD, and HFD+EA groups. NC rats were fed a standard chow diet and did not receive EA. After being fed an HFD for eight weeks, rats in the HFD+EA group received EA at 2 Hz five times a week for eight weeks. Rats in the HFD group did not receive EA. RESULTS In HFD-induced IR rats, EA inhibited body weight increase and water intake, which were observed in HFD rats. EA had no effect on fasting blood glucose and postprandial blood sugar levels. Intraperitoneal insulin tolerance testing revealed that EA enhanced insulin sensitivity in HFD-induced IR rats. Compared with NC rats, SIRT1 and GLUT4 were downregulated in the quadriceps femoris of HFD-fed rats but were increased after eight weeks of EA stimulation. CONCLUSIONS EA enhanced HFD-induced insulin resistance by activating SIRT1 and GLUT4 in the quadriceps femoris. These results provide powerful evidence supporting the beneficial effects of EA on HFD-induced insulin resistance.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | - F. Liang
- Hubei University of Chinese Medicine, Department of Acupuncture and Moxibustion, Wuhan, China
- Wuhan, China
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22
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Wan W, Christensen NB, Sandvik AW, Tregenna-Piggott P, Nilsen GJ, Mourigal M, Perring TG, Frost CD, McMorrow DF, Rønnow HM. Temperature dependence of the(π,0)anomaly in the excitation spectrum of the 2D quantum Heisenberg antiferromagnet. J Phys Condens Matter 2020; 32:374007. [PMID: 32050188 DOI: 10.1088/1361-648x/ab757a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2019] [Accepted: 02/12/2020] [Indexed: 06/10/2023]
Abstract
It is well established that in the low-temperature limit, the two-dimensional quantum Heisenberg antiferromagnet on a square lattice (2DQHAFSL) exhibits an anomaly in its spectrum at short-wavelengths on the zone-boundary. In the vicinity of thepoint the pole in the one-magnon response exhibits a downward dispersion, is heavily damped and attenuated, giving way to an isotropic continuum of excitations extending to high energies. The origin of the anomaly and the presence of the continuum are of current theoretical interest, with suggestions focused around the idea that the latter evidences the existence of spinons in a two-dimensional system. Here we present the results of neutron inelastic scattering experiments and Quantum Monte Carlo calculations on the metallo-organic compound Cu(DCOO)D2O (CFTD), an excellent physical realisation of the 2DQHAFSL, designed to investigate how the anomaly atevolves up to finite temperatures. Our data reveal that on warming the anomaly survives the loss of long-range, three-dimensional order, and that it is thus a robust feature of the two-dimensional system. With further increase of temperature the zone-boundary response gradually softens and broadens, washing out theanomaly. This is confirmed by a comparison of our data with the results of finite-temperature Quantum Monte Carlo simulations where the two are found to be in good accord. In the vicinity of the antiferromagnetic zone centre, there was no significant softening of the magnetic excitations over the range of temperatures investigated.
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Affiliation(s)
- W Wan
- Department of Physics, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
| | - N B Christensen
- Department of Physics, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark
| | - A W Sandvik
- Department of Physics, Boston University, 590 Commonwealth Avenue, Boston, MA 02215, United States of America
- Beijing National Laboratory for Condensed Matter Physics and Institute of Physics, Chinese Academy of Sciences, Beijing 100190, People's Republic of China
| | - P Tregenna-Piggott
- Laboratory for Neutron Scattering and Imaging, Paul Scherrer Institut, CH-5232 Villigen PSI, Switzerland
| | - G J Nilsen
- ISIS Neutron and Muon Facility, Rutherford Appleton Laboratory, Science and Technology Facilities Council, Didcot OX11 0QX, United Kingdom
| | - M Mourigal
- School of Physics, Georgia Institute of Technology, 837 State Street, Atlanta, GA 30332, United States of America
| | - T G Perring
- ISIS Neutron and Muon Facility, Rutherford Appleton Laboratory, Science and Technology Facilities Council, Didcot OX11 0QX, United Kingdom
| | - C D Frost
- ISIS Neutron and Muon Facility, Rutherford Appleton Laboratory, Science and Technology Facilities Council, Didcot OX11 0QX, United Kingdom
| | - D F McMorrow
- London Centre for Nanotechnology and Department of Physics and Astronomy, University College London, London WC1E 6BT, United Kingdom
| | - H M Rønnow
- Laboratory for Quantum Magnetism, Institute of Physics, École Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
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23
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Wang JG, Zhao XG, Wang XL, Liu MX, Wan W. Low expression of miR-1 promotes osteogenic repair of bone marrow mesenchymal stem cells by targeting TLR1. Eur Rev Med Pharmacol Sci 2020; 24:3492-3500. [PMID: 32329822 DOI: 10.26355/eurrev_202004_20808] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
OBJECTIVE Bone marrow mesenchymal stem cells (BMSCs) promote bone tissue repair. MiR-1 regulates myogenic and osteogenic differentiation of human adipose tissue stem cells. However, miR-1's effect on BMSCs osteogenesis is unclear. MATERIALS AND METHODS Rat BMSCs were isolated and divided into control group, miR-1 group, and si-miR-1 group respectively transfected with miR-1 plasmid and miR-1 siRNA followed by analysis of cell proliferation by MTT assay and Caspase 3 activity. The expression of osteogenic genes Runx2 and OPN was measured by Real Time-PCR. Healthy male Sprague-Dawley rats were separated into fracture group, NC group, and si-miR-1 group followed by analysis of bone mineral density, miR-1 level by Real Time-PCR, type I collagen, and BMP-2 by enzyme-linked immunosorbent assay (ELISA), and TLR1 expression by Western blot. RESULTS Transfection of miR-1 siRNA into BMSCs significantly downregulated miR-1 expression, promoted BMSCs cell proliferation, inhibited Caspase 3 activity, as well as promoted osteogenic genes Runx2 and OPN expression and decreased TLR1 expression (p<0.05). The upregulation of miR-1 expression significantly reversed the above changes. TLR1 is a target of miR-1. Downregulation of miR-1 expression in BMSCs of fractured rats significantly increased bone density and ALP activity, promoted type I collagen and BMP-2 expression, and decreased TLR1 expression (p<0.05). CONCLUSIONS The downregulation of miR-1 promotes BMSCs osteogenic differentiation via targeting TLR1, which promotes osteogenic differentiation and bone healing.
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Affiliation(s)
- J-G Wang
- Department of Joint Surgery, Hiser Medical Center of Qingdao, Qingdao, Shandong, China.
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24
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Liu J, Zhu L, Wan W, Huang X. Gold-Catalyzed Oxidative Cascade Cyclization of 1,3-Diynamides: Polycyclic N-Heterocycle Synthesis via Construction of a Furopyridinyl Core. Org Lett 2020; 22:3279-3285. [PMID: 32242410 DOI: 10.1021/acs.orglett.0c01086] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
A facile and practical approach to construct a furopyridinyl motif through a gold-catalyzed cascade cyclization of easily accessible diynamides is described. This strategy offers a straightforward approach to furo[2,3-c]isoquinoline and 6H-furo[3',2':5,6]pyrido[3,4-b]indole derivatives. The reaction could build up four new bonds and two additional heteroaromatic rings via a single operation. The heterocyclic products show promising blue luminous performance with fluorescence quantum yields up to 75%.
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Affiliation(s)
- Jibing Liu
- Key Laboratory of Coal to Ethylene Glycol and Its Related Technology, Center for Excellence in Molecular Synthesis, Fujian Institute of Research on the Structure of Matter, Fujian College, Chinese Academy of Sciences, Fuzhou, Fujian 350002, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Lei Zhu
- Key Laboratory of Coal to Ethylene Glycol and Its Related Technology, Center for Excellence in Molecular Synthesis, Fujian Institute of Research on the Structure of Matter, Fujian College, Chinese Academy of Sciences, Fuzhou, Fujian 350002, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Wan Wan
- Key Laboratory of Coal to Ethylene Glycol and Its Related Technology, Center for Excellence in Molecular Synthesis, Fujian Institute of Research on the Structure of Matter, Fujian College, Chinese Academy of Sciences, Fuzhou, Fujian 350002, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xueliang Huang
- Key Laboratory of Coal to Ethylene Glycol and Its Related Technology, Center for Excellence in Molecular Synthesis, Fujian Institute of Research on the Structure of Matter, Fujian College, Chinese Academy of Sciences, Fuzhou, Fujian 350002, China.,University of Chinese Academy of Sciences, Beijing 100049, China
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25
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Li C, Gao H, Wan W, Mueller T. Mechanisms for hydrogen evolution on transition metal phosphide catalysts and a comparison to Pt(111). Phys Chem Chem Phys 2019; 21:24489-24498. [PMID: 31687692 DOI: 10.1039/c9cp05094a] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Earth-abundant transition metal phosphides have been demonstrated to be promising alternative catalysts to replace Pt for hydrogen evolution reaction (HER). However, the mechanism for the hydrogen evolution reaction on transition metal phosphides remains unclear. Here, we explore the catalytically active sites and the reaction mechanisms on a variety of model transition metal phosphide surfaces by building cluster expansion models and running Monte Carlo simulations. We demonstrate that the effect of hydrogen coverage, interaction between hydrogen atoms and desorption kinetics all dictate the HER mechanisms and the active sites, and we propose mechanisms that are in good agreement with experimental studies. The present method provides a general and effective way to probe the active sites and study the mechanisms of catalytic reactions, which can facilitate the rational design of highly active electrocatalysts.
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Affiliation(s)
- Chenyang Li
- Department of Materials Science and Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA.
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26
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Bao F, Hu K, Wan W, Tian L, Jing HM. [Efficacy of anti-CD19 CAR-T cell therapy in 10 refractory recurrent B cell malignancies]. Zhonghua Xue Ye Xue Za Zhi 2019; 39:454-459. [PMID: 30032559 PMCID: PMC7342922 DOI: 10.3760/cma.j.issn.0253-2727.2018.06.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
目的 探讨抗CD19 CAR-T细胞治疗难治复发B细胞肿瘤的疗效和不良反应。 方法 2015年12月至2017年7月北京大学第三医院血液科收治的10例患者,包括难治复发的急性B淋巴细胞白血病(B-ALL)6例,难治复发的B细胞非霍奇金淋巴瘤(NHL)4例,采用抗CD19 CAR-T细胞治疗后观察治疗效果及不良反应。 结果 输注后第28天进行近期疗效评估,其中6例ALL患者4例(66.7%)完全缓解(CR),1例(16.7%)部分缓解(PR);总反应率(ORR)为83.3%。3例弥漫大B细胞淋巴瘤(DLBCL)患者1例达CR。1例套细胞淋巴瘤(MCL)患者大部分病灶消失,亦有顽固病灶呈进展状态。10例患者均发生细胞因子释放综合征(CRS),主要表现为发热;其中1例患者出现中枢神经系统症状,1例患者出现多脏器功能衰竭,经治疗不良反应均治愈。 结论 抗CD19 CAR-T细胞治疗难治复发B细胞血液系统肿瘤有效,不良反应可控。
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Affiliation(s)
- F Bao
- Department of Hematology, Peking University Third Hospital, Beijing 100083, China
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27
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Ivashko O, Horio M, Wan W, Christensen NB, McNally DE, Paris E, Tseng Y, Shaik NE, Rønnow HM, Wei HI, Adamo C, Lichtensteiger C, Gibert M, Beasley MR, Shen KM, Tomczak JM, Schmitt T, Chang J. Strain-engineering Mott-insulating La 2CuO 4. Nat Commun 2019; 10:786. [PMID: 30783084 PMCID: PMC6381167 DOI: 10.1038/s41467-019-08664-6] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2018] [Accepted: 01/20/2019] [Indexed: 11/10/2022] Open
Abstract
The transition temperature Tc of unconventional superconductivity is often tunable. For a monolayer of FeSe, for example, the sweet spot is uniquely bound to titanium-oxide substrates. By contrast for La2-xSrxCuO4 thin films, such substrates are sub-optimal and the highest Tc is instead obtained using LaSrAlO4. An outstanding challenge is thus to understand the optimal conditions for superconductivity in thin films: which microscopic parameters drive the change in Tc and how can we tune them? Here we demonstrate, by a combination of x-ray absorption and resonant inelastic x-ray scattering spectroscopy, how the Coulomb and magnetic-exchange interaction of La2CuO4 thin films can be enhanced by compressive strain. Our experiments and theoretical calculations establish that the substrate producing the largest Tc under doping also generates the largest nearest neighbour hopping integral, Coulomb and magnetic-exchange interaction. We hence suggest optimising the parent Mott state as a strategy for enhancing the superconducting transition temperature in cuprates.
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Affiliation(s)
- O Ivashko
- Physik-Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057, Zürich, Switzerland.
| | - M Horio
- Physik-Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057, Zürich, Switzerland
| | - W Wan
- Department of Physics, Technical University of Denmark, DK-2800, Kongens Lyngby, Denmark
| | - N B Christensen
- Department of Physics, Technical University of Denmark, DK-2800, Kongens Lyngby, Denmark
| | - D E McNally
- Photon Science Division, Swiss Light Source, Paul Scherrer Institut, CH-5232, Villigen PSI, Switzerland
| | - E Paris
- Photon Science Division, Swiss Light Source, Paul Scherrer Institut, CH-5232, Villigen PSI, Switzerland
| | - Y Tseng
- Photon Science Division, Swiss Light Source, Paul Scherrer Institut, CH-5232, Villigen PSI, Switzerland
| | - N E Shaik
- Institute of Physics, École Polytechnique Fedérale de Lausanne (EPFL), CH-1015, Lausanne, Switzerland
| | - H M Rønnow
- Institute of Physics, École Polytechnique Fedérale de Lausanne (EPFL), CH-1015, Lausanne, Switzerland
| | - H I Wei
- Department of Physics, Laboratory of Atomic and Solid State Physics, Cornell University, Ithaca, NY, 14853, USA
| | - C Adamo
- Department of Applied Physics, Stanford University, Stanford, CA, 94305, USA
| | - C Lichtensteiger
- Department of Quantum Matter Physics, University of Geneva, 24 Quai Ernest Ansermet, 1211, Geneva, Switzerland
| | - M Gibert
- Physik-Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057, Zürich, Switzerland
| | - M R Beasley
- Department of Applied Physics, Stanford University, Stanford, CA, 94305, USA
| | - K M Shen
- Department of Physics, Laboratory of Atomic and Solid State Physics, Cornell University, Ithaca, NY, 14853, USA
| | - J M Tomczak
- Institute of Solid State Physics, Vienna University of Technology, A-1040, Vienna, Austria
| | - T Schmitt
- Photon Science Division, Swiss Light Source, Paul Scherrer Institut, CH-5232, Villigen PSI, Switzerland
| | - J Chang
- Physik-Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057, Zürich, Switzerland
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28
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Wang J, Li Y, Huang Z, Wan W, Zhang Y, Wang C, Cheng X, Ye F, Liu K, Fei G, Zeng M, Jin L. Neuromelanin-sensitive magnetic resonance imaging features of the substantia nigra and locus coeruleus in de novo
Parkinson's disease and its phenotypes. Eur J Neurol 2018. [PMID: 29520900 DOI: 10.1111/ene.13628] [Citation(s) in RCA: 54] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- J. Wang
- Department of Radiology; Zhongshan Hospital; Fudan University; Shanghai China
- Shanghai Medical Imaging Institute; Shanghai China
| | - Y. Li
- Department of Neurology; Zhongshan Hospital; Fudan University; Shanghai China
| | - Z. Huang
- Department of Neurology; Zhongshan Hospital; Fudan University; Shanghai China
| | - W. Wan
- Department of Neurology; Zhongshan Hospital; Fudan University; Shanghai China
| | - Y. Zhang
- MR Research; GE Healthcare; Shanghai China
| | - C. Wang
- Department of Neurology; Zhongshan Hospital; Fudan University; Shanghai China
| | - X. Cheng
- Department of Neurology; Zhongshan Hospital; Fudan University; Shanghai China
| | - F. Ye
- Department of Radiology; Zhongshan Hospital; Fudan University; Shanghai China
- Shanghai Medical Imaging Institute; Shanghai China
| | - K. Liu
- Department of Radiology; Zhongshan Hospital; Fudan University; Shanghai China
- Shanghai Medical Imaging Institute; Shanghai China
| | - G. Fei
- Department of Neurology; Zhongshan Hospital; Fudan University; Shanghai China
| | - M. Zeng
- Department of Radiology; Zhongshan Hospital; Fudan University; Shanghai China
- Shanghai Medical Imaging Institute; Shanghai China
| | - L. Jin
- Department of Neurology; Zhongshan Hospital; Fudan University; Shanghai China
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29
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Scholl A, Marcus MA, Doran A, Nasiatka JR, Young AT, MacDowell AA, Streubel R, Kent N, Feng J, Wan W, Padmore HA. Hartmann characterization of the PEEM-3 aberration-corrected X-ray photoemission electron microscope. Ultramicroscopy 2018; 188:77-84. [PMID: 29554489 DOI: 10.1016/j.ultramic.2018.03.010] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2017] [Revised: 03/06/2018] [Accepted: 03/09/2018] [Indexed: 11/24/2022]
Abstract
Aberration correction by an electron mirror dramatically improves the spatial resolution and transmission of photoemission electron microscopes. We will review the performance of the recently installed aberration corrector of the X-ray Photoemission Electron Microscope PEEM-3 and show a large improvement in the efficiency of the electron optics. Hartmann testing is introduced as a quantitative method to measure the geometrical aberrations of a cathode lens electron microscope. We find that aberration correction leads to an order of magnitude reduction of the spherical aberrations, suggesting that a spatial resolution of below 100 nm is possible at 100% transmission of the optics when using x-rays. We demonstrate this improved performance by imaging test patterns employing element and magnetic contrast.
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Affiliation(s)
- A Scholl
- Advanced Light Source, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley CA 94720, USA.
| | - M A Marcus
- Advanced Light Source, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley CA 94720, USA
| | - A Doran
- Advanced Light Source, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley CA 94720, USA
| | - J R Nasiatka
- Advanced Light Source, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley CA 94720, USA
| | - A T Young
- Advanced Light Source, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley CA 94720, USA
| | - A A MacDowell
- Advanced Light Source, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley CA 94720, USA
| | - R Streubel
- Materials Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley CA 94720, USA
| | - N Kent
- Materials Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley CA 94720, USA; Department of Physics, University of California, Santa Cruz, Santa Cruz, CA 95064, USA
| | - J Feng
- Advanced Light Source, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley CA 94720, USA
| | - W Wan
- Advanced Light Source, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley CA 94720, USA
| | - H A Padmore
- Advanced Light Source, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley CA 94720, USA
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30
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Abstract
This review presents various TEM techniques including electron diffraction, high-resolution TEM and scanning TEM imaging, and electron tomography and their applications for structure characterization of zeolite materials.
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Affiliation(s)
- W. Wan
- Inorganic and Structural Chemistry
- Department of Materials and Environmental Chemistry
- Stockholm University
- SE-106 91 Stockholm
- Sweden
| | - J. Su
- Inorganic and Structural Chemistry
- Department of Materials and Environmental Chemistry
- Stockholm University
- SE-106 91 Stockholm
- Sweden
| | - X. D. Zou
- Inorganic and Structural Chemistry
- Department of Materials and Environmental Chemistry
- Stockholm University
- SE-106 91 Stockholm
- Sweden
| | - T. Willhammar
- Inorganic and Structural Chemistry
- Department of Materials and Environmental Chemistry
- Stockholm University
- SE-106 91 Stockholm
- Sweden
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31
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Clabbers MTB, van Genderen E, Wan W, Wiegers EL, Gruene T, Abrahams JP. Protein structure determination by electron diffraction using a single three-dimensional nanocrystal. Acta Crystallogr D Struct Biol 2017; 73:738-748. [PMID: 28876237 PMCID: PMC5586247 DOI: 10.1107/s2059798317010348] [Citation(s) in RCA: 70] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2016] [Accepted: 07/12/2017] [Indexed: 11/11/2022] Open
Abstract
Three-dimensional nanometre-sized crystals of macromolecules currently resist structure elucidation by single-crystal X-ray crystallography. Here, a single nanocrystal with a diffracting volume of only 0.14 µm3, i.e. no more than 6 × 105 unit cells, provided sufficient information to determine the structure of a rare dimeric polymorph of hen egg-white lysozyme by electron crystallography. This is at least an order of magnitude smaller than was previously possible. The molecular-replacement solution, based on a monomeric polyalanine model, provided sufficient phasing power to show side-chain density, and automated model building was used to reconstruct the side chains. Diffraction data were acquired using the rotation method with parallel beam diffraction on a Titan Krios transmission electron microscope equipped with a novel in-house-designed 1024 × 1024 pixel Timepix hybrid pixel detector for low-dose diffraction data collection. Favourable detector characteristics include the ability to accurately discriminate single high-energy electrons from X-rays and count them, fast readout to finely sample reciprocal space and a high dynamic range. This work, together with other recent milestones, suggests that electron crystallography can provide an attractive alternative in determining biological structures.
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Affiliation(s)
- M. T. B. Clabbers
- Center for Cellular Imaging and NanoAnalytics (C-CINA), Biozentrum, Basel University, Mattenstrasse 26, CH-4058 Basel, Switzerland
| | - E. van Genderen
- Department of Biology and Chemistry, Paul Scherrer Institut (PSI), CH-5232 Villigen PSI, Switzerland
| | - W. Wan
- Department of Materials and Environmental Chemistry, Stockholm University, SE-106 91 Stockholm, Sweden
| | - E. L. Wiegers
- Leiden Institute of Physics, Leiden University, Niels Bohrweg 2, 2333 CA Leiden, The Netherlands
| | - T. Gruene
- Department of Biology and Chemistry, Paul Scherrer Institut (PSI), CH-5232 Villigen PSI, Switzerland
| | - J. P. Abrahams
- Center for Cellular Imaging and NanoAnalytics (C-CINA), Biozentrum, Basel University, Mattenstrasse 26, CH-4058 Basel, Switzerland
- Department of Biology and Chemistry, Paul Scherrer Institut (PSI), CH-5232 Villigen PSI, Switzerland
- Leiden Institute of Biology, Leiden University, Sylviusweg 72, 2333 BE Leiden, The Netherlands
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Yang P, Jing HM, Zhao W, Hu K, Dong F, Li QH, Wan W, Tian L, Wang JJ, Ke XY. [Analysis of survival and treatment outcome of young patients with high-risk diffuse large B cell lymphoma]. Zhonghua Yi Xue Za Zhi 2017; 97:2485-2490. [PMID: 28835053 DOI: 10.3760/cma.j.issn.0376-2491.2017.32.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Objective: To analyze clinical feature and treatment outcome of young patients with high-risk diffuse large B cell lymphoma. Methods: A total of 122 young patients with high-risk diffuse large B cell lymphoma who were treated in Third Hospital of Peking University during the period from January 2000 to April 2015 were retrospectively analyzed, and the clinical features, laboratory data were included in Kaplan-Meier and prognostic analysis. Results: In our center, the incidence of young high-risk DLBCL was 27.1% in all DLBCL patients, median age was 44.0 years, 99.2% patients belong to Ⅲ and Ⅳstage, 50% patients had more than two extranodal organs involvement, and the higher proliferation index(Ki-67≥80%) was present in 63.1% of patients, Immunohistochemistry showed that 36.7% patients in 30 cases were double-expressed DLBCL. The overall response rate(ORR) for the whole group was 79.4%, the complete response rate was 39.7% , the 3, 5-year progression free survival rate was 59.8% and 57.0%, the 3, 5-year overall survival rate was 63.5% and 57.8%, respectively. 44.3% patients were refractory-relapsed DLBCL. Rituximab can improve the survival of patients and 3-year overall survival rate was 75.2% vs 46.1%(P=0.001). High-dose chemotherapy was superior to CHOP regimen which 3-year overall survival rate was 84.6% vs 54.1%(P=0.006). Compared with chemotherapy group , auto-hematopoietic stem cell transplantation can improve prognosis of patients and 3-year overall survival rate was 93.4% vs 48.3%(P<0.001). The level of Ki-67, B symptom, ECOG score, the level of LDH, WBC and albumin, ESR level, anemia, rituximab therapy, initial regimens, ASCT, initial treatment outcome and refractory-relapsed were predictive of overall survival. Multivariate analysis indicated that albumin level(RR=5.462, P=0.019), initial treatment outcome(RR=34.863, P<0.001) and refractory-relapsed (RR=24.374, P<0.001)were independent prognostic risk factors. Conclusions: Young patients with high-risk DLBCL were highly aggressive in clinical and pathological features . Rituximab and high-dose regimens can improve the survival of patients.
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Affiliation(s)
- P Yang
- Department of Hematology, Third Hospital of Peking University, Beijing 100191, China
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Bear HD, Wan W, Robidoux A, Rubin P, Limentani S, White RL, Granfortuna J, Hopkins JO, Oldham D, Rodriguez A, Sing AP. Abstract P2-10-04: Using the 21-gene assay from core needle biopsies to choose neoadjuvant therapy for breast cancer: A multi-center trial. Cancer Res 2017. [DOI: 10.1158/1538-7445.sabcs16-p2-10-04] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
Neoadjuvant systemic therapy (NST) can facilitate breast conserving surgery (BCS) for large cancers. While hormone receptor positive (HR+) cancers respond to neoadjuvant chemotherapy (NCT), pathologic complete responses (pCR) are unlikely. Neoadjuvant hormonal therapy (NHT) may make BCS possible with less toxicity than NCT. We hypothesized that the Oncotype Dx® 21-gene Recurrence Score (RS), could guide the decision to treat with NHT versus NCT to facilitate BCS. This hypothesis is based on the ability of the RS to identify ER+ patients (pts) likely to benefit from adjuvant CT vs unlikely to benefit, as well as prior studies showing that pts with a low RS have no pCRs when receiving NCT (Yardley, et al 2015).
Methods: This prospective multi-center study enrolled pts with HR+, HER2-negative, invasive breast cancers not suitable for BCS (size ≥ 2 cm). Diagnosis was made by core needle biopsy (bx). Tissue blocks from the bx's were sent to Genomic Health for RS testing. Pts whose tumors had a RS < 11 were to receive NHT; pts with RS >25 tumors were to receive NCT; pts with midrange RS of 11-25 were randomized to NHT or NCT.
The primary objective was the feasibility of randomizing pts with RS values 11-25 between NHT and NCT. The primary endpoint was whether 1/3 or more of randomized pts would refuse assigned treatment. Secondary endpoints included: clinical partial and complete response (cPR, cCR) rates, overall clinical response rates (CR), pCR in the breast, pCR in the breast and nodes and successful BCS. One-sample binomial test was used to compare the observed refusal rate with 1/3, along with its 95% CI. Fisher's exact test, logistic regression (for a binary endpoint), and/or ordinal regression (for an ordinal endpoint) were used to compare the 4 treatment groups for secondary endpoints.
Results: Seven US and Canadian centers enrolled 64 pts; 5 were excluded (1 delay in RS result, 1 lost block, 1 HR testing discrepancy, 2 not eligible). Of 33 pts with RS 11-25, 5 (15%; 95% CI =2.9% - 27.4%) refused assignment to NCT (2 chose NHT and finished the study). This was significantly lower than the 33% target (binomial test, p=0.0292). Results for other endpoints are shown in the Table (according to treatment received); the total number of pts for the analyses is 55; 1 pt had missing data for clinical response.
Results According to TreatmentTreatment GroupRS<11 NHTRS 11-25 NHTRS 11-25 NCTRS>25 NCTOverall PNN=12N=18N=11N=14 cCR8.3%22.2%36.4%28.6%0.0422cPR75%27.8%36.4%64.3% CR (cCR + cPR)83.3%50%72.7%92.9%0.0490pCR Breast8.3%6%021.4%NSpCR Breast + Nodes00014.3%NSSuccessful BCS75%72.2%63.6%57.1%NS
Conclusions:This pilot showed the feasibility of using the RS to guide NST, with only a 15% refusal rate of randomly assigned treatment. Of greater interest is the finding that pts with a RS <11 had a high CR rate with NHT and that pts with a RS 11-25 who received NHT had a similar rate of BCS success as the pts with RS <11. Conversely, pts with RS>25 treated with NCT had the highest CR (cCR + pCR) and pCR rates. These results demonstrate that conducting a similarly designed larger trial is feasible and suggests that for pts with a low RS, NHT is a potentially effective strategy.
Citation Format: Bear HD, Wan W, Robidoux A, Rubin P, Limentani S, White, Jr. RL, Granfortuna J, Hopkins JO, Oldham D, Rodriguez A, Sing AP. Using the 21-gene assay from core needle biopsies to choose neoadjuvant therapy for breast cancer: A multi-center trial [abstract]. In: Proceedings of the 2016 San Antonio Breast Cancer Symposium; 2016 Dec 6-10; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2017;77(4 Suppl):Abstract nr P2-10-04.
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Affiliation(s)
- HD Bear
- Virginia Commonwealth University, Massey Cancer Center, Richmond, VA; Centre Hospitalier de l'Universite de Montreal, Montreal, QC, Canada; Cone Health Cancer Center, Greensboro, NC; Carolinas Medical Center, Charlotte, NC; Forsyth Regional Cancer Center, Winston-Salem, NC; Lynchburg Hematology Oncology Clinic, Lynchburg, VA; Methodist Hospital, Houston, TX; Genomic Health, Inc, Redwood City, CA
| | - W Wan
- Virginia Commonwealth University, Massey Cancer Center, Richmond, VA; Centre Hospitalier de l'Universite de Montreal, Montreal, QC, Canada; Cone Health Cancer Center, Greensboro, NC; Carolinas Medical Center, Charlotte, NC; Forsyth Regional Cancer Center, Winston-Salem, NC; Lynchburg Hematology Oncology Clinic, Lynchburg, VA; Methodist Hospital, Houston, TX; Genomic Health, Inc, Redwood City, CA
| | - A Robidoux
- Virginia Commonwealth University, Massey Cancer Center, Richmond, VA; Centre Hospitalier de l'Universite de Montreal, Montreal, QC, Canada; Cone Health Cancer Center, Greensboro, NC; Carolinas Medical Center, Charlotte, NC; Forsyth Regional Cancer Center, Winston-Salem, NC; Lynchburg Hematology Oncology Clinic, Lynchburg, VA; Methodist Hospital, Houston, TX; Genomic Health, Inc, Redwood City, CA
| | - P Rubin
- Virginia Commonwealth University, Massey Cancer Center, Richmond, VA; Centre Hospitalier de l'Universite de Montreal, Montreal, QC, Canada; Cone Health Cancer Center, Greensboro, NC; Carolinas Medical Center, Charlotte, NC; Forsyth Regional Cancer Center, Winston-Salem, NC; Lynchburg Hematology Oncology Clinic, Lynchburg, VA; Methodist Hospital, Houston, TX; Genomic Health, Inc, Redwood City, CA
| | - S Limentani
- Virginia Commonwealth University, Massey Cancer Center, Richmond, VA; Centre Hospitalier de l'Universite de Montreal, Montreal, QC, Canada; Cone Health Cancer Center, Greensboro, NC; Carolinas Medical Center, Charlotte, NC; Forsyth Regional Cancer Center, Winston-Salem, NC; Lynchburg Hematology Oncology Clinic, Lynchburg, VA; Methodist Hospital, Houston, TX; Genomic Health, Inc, Redwood City, CA
| | - RL White
- Virginia Commonwealth University, Massey Cancer Center, Richmond, VA; Centre Hospitalier de l'Universite de Montreal, Montreal, QC, Canada; Cone Health Cancer Center, Greensboro, NC; Carolinas Medical Center, Charlotte, NC; Forsyth Regional Cancer Center, Winston-Salem, NC; Lynchburg Hematology Oncology Clinic, Lynchburg, VA; Methodist Hospital, Houston, TX; Genomic Health, Inc, Redwood City, CA
| | - J Granfortuna
- Virginia Commonwealth University, Massey Cancer Center, Richmond, VA; Centre Hospitalier de l'Universite de Montreal, Montreal, QC, Canada; Cone Health Cancer Center, Greensboro, NC; Carolinas Medical Center, Charlotte, NC; Forsyth Regional Cancer Center, Winston-Salem, NC; Lynchburg Hematology Oncology Clinic, Lynchburg, VA; Methodist Hospital, Houston, TX; Genomic Health, Inc, Redwood City, CA
| | - JO Hopkins
- Virginia Commonwealth University, Massey Cancer Center, Richmond, VA; Centre Hospitalier de l'Universite de Montreal, Montreal, QC, Canada; Cone Health Cancer Center, Greensboro, NC; Carolinas Medical Center, Charlotte, NC; Forsyth Regional Cancer Center, Winston-Salem, NC; Lynchburg Hematology Oncology Clinic, Lynchburg, VA; Methodist Hospital, Houston, TX; Genomic Health, Inc, Redwood City, CA
| | - D Oldham
- Virginia Commonwealth University, Massey Cancer Center, Richmond, VA; Centre Hospitalier de l'Universite de Montreal, Montreal, QC, Canada; Cone Health Cancer Center, Greensboro, NC; Carolinas Medical Center, Charlotte, NC; Forsyth Regional Cancer Center, Winston-Salem, NC; Lynchburg Hematology Oncology Clinic, Lynchburg, VA; Methodist Hospital, Houston, TX; Genomic Health, Inc, Redwood City, CA
| | - A Rodriguez
- Virginia Commonwealth University, Massey Cancer Center, Richmond, VA; Centre Hospitalier de l'Universite de Montreal, Montreal, QC, Canada; Cone Health Cancer Center, Greensboro, NC; Carolinas Medical Center, Charlotte, NC; Forsyth Regional Cancer Center, Winston-Salem, NC; Lynchburg Hematology Oncology Clinic, Lynchburg, VA; Methodist Hospital, Houston, TX; Genomic Health, Inc, Redwood City, CA
| | - AP Sing
- Virginia Commonwealth University, Massey Cancer Center, Richmond, VA; Centre Hospitalier de l'Universite de Montreal, Montreal, QC, Canada; Cone Health Cancer Center, Greensboro, NC; Carolinas Medical Center, Charlotte, NC; Forsyth Regional Cancer Center, Winston-Salem, NC; Lynchburg Hematology Oncology Clinic, Lynchburg, VA; Methodist Hospital, Houston, TX; Genomic Health, Inc, Redwood City, CA
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Abstract
In addition to its roles in embryonic development, Growth and Differentiation Factor 11 (GDF 11) has recently drawn much interest about its roles in other processes, such as aging. GDF 11 has been shown to play pivotal roles in the rescue of the proliferative and regenerative capabilities of skeletal muscle, neural stem cells and cardiomyocytes. We would be remiss not to point that some controversy exists regarding the role of GDF 11 in biological processes and whether it will serve as a therapeutic agent. The latest studies have shown that the level of circulating GDF 11 correlates with the outcomes of patients with cardiovascular diseases, cancer and uremia. Based on these studies, GDF 11 is a promising candidate to serve as a novel biomarker of diseases. This brief review gives a detailed and concise view of the regulation and functions of GDF 11 and its roles in development, neurogenesis and erythropoiesis as well as the prospect of using this protein as an indicator of cardiac health and aging.
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Affiliation(s)
- A Jamaiyar
- Department of Integrative Medical Sciences, Northeast Ohio Medical University, Rootstown, OH, USA; School of Biomedical Sciences, Kent State University, Kent, OH, USA
| | - W Wan
- Department of Integrative Medical Sciences, Northeast Ohio Medical University, Rootstown, OH, USA; Department of Cardiology, Renmin Hospital of Wuhan University, Hubei, China
| | - D M Janota
- Department of Integrative Medical Sciences, Northeast Ohio Medical University, Rootstown, OH, USA
| | - M K Enrick
- Department of Integrative Medical Sciences, Northeast Ohio Medical University, Rootstown, OH, USA
| | - W M Chilian
- Department of Integrative Medical Sciences, Northeast Ohio Medical University, Rootstown, OH, USA
| | - L Yin
- Department of Integrative Medical Sciences, Northeast Ohio Medical University, Rootstown, OH, USA.
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Abstract
Development of advanced analytical techniques is essential for the identification of water oxidation catalysts together with mechanistic studies.
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Affiliation(s)
- J. Li
- University of Zurich
- Department of Chemistry
- CH-8057 Zurich
- Switzerland
| | - R. Güttinger
- University of Zurich
- Department of Chemistry
- CH-8057 Zurich
- Switzerland
| | - R. Moré
- University of Zurich
- Department of Chemistry
- CH-8057 Zurich
- Switzerland
| | - F. Song
- University of Zurich
- Department of Chemistry
- CH-8057 Zurich
- Switzerland
| | - W. Wan
- University of Zurich
- Department of Chemistry
- CH-8057 Zurich
- Switzerland
| | - G. R. Patzke
- University of Zurich
- Department of Chemistry
- CH-8057 Zurich
- Switzerland
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Chong W, Che XY, Wan W, Wu J. [Application of fast-track surgery concept in the perioperative nursing care of andrological patients: A randomized controlled study]. Zhonghua Nan Ke Xue 2016; 22:1001-1004. [PMID: 29281208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
OBJECTIVE To evaluate the application of the fast-track surgery (FTS) concept in the nursing care of andrological patients during the perioperative period. METHODS A total of 200 males to be treated by andrological surgery were included in a control group and another 200 in an observation group, the former received conventional perioperative nursing care, while the latter underwent an FTS nursing care procedure including a variety of proven effective methods to reduce surgical stress and achieve a quick recovery during the perioperative period. Comparisons were made between the two groups of patients in the postoperative enterokinesia time, anal exhaust time, eating time, off-bed time, defecating time, bowel preparation complications, and degree of comfort and satisfaction. RESULTS Compared with the controls, the patients in the observation group showed significantly earlier postoperative enterokinesia time ([5.8±0.9] vs [4.4±1.4] h, P<0.01), anal exhaust time ([10.8±1.8] vs [7.7±2.0] h, P<0.01), eating time ([12.9±0.7] vs [6.3±0.7] h, P<0.01), off-bed time [14.3±2.7] vs [8.2±1.4] h, P<0.01), and defecating time ([49.2±2.6] vs [39.6±2.5] h, P<0.01), a lower incidence of bowel preparation complications (P<0.01), and a higher degree of comfort (P<0.01) and satisfaction ([97.5±0.7]% vs [99.4±+0.3] %, P<0.01). CONCLUSIONS The FTS concept can be safely and effectively applied to the perioperative nursing care of andrological patients to achieve a faster recovery and higher degree of comfort and satisfaction postoperatively.
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Affiliation(s)
- Wu Chong
- Department of Andrology, Drum Tower Hospital Affiliated to Nanjing University School of Medicine, Nanjing, Jiangsu 210008, China
| | - Xiao-Yan Che
- Department of Andrology, Drum Tower Hospital Affiliated to Nanjing University School of Medicine, Nanjing, Jiangsu 210008, China
| | - Wan Wan
- Department of Andrology, Drum Tower Hospital Affiliated to Nanjing University School of Medicine, Nanjing, Jiangsu 210008, China
| | - Jing Wu
- Department of Andrology, Drum Tower Hospital Affiliated to Nanjing University School of Medicine, Nanjing, Jiangsu 210008, China
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Anderson J, Wan W, Kaplan B, Myers J, Fields E. Changing Paradigm in Pancreatic Cancer: From Adjuvant to Neoadjuvant Chemoradiation. Int J Radiat Oncol Biol Phys 2016. [DOI: 10.1016/j.ijrobp.2016.06.997] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Nabavizadeh R, Abbassi M, Wan W, Grob B, Fields E. Underuse and Potential Detrimental Effect of Radiation Therapy in the Management of Ureteral Carcinoma. Int J Radiat Oncol Biol Phys 2016. [DOI: 10.1016/j.ijrobp.2016.06.1289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Abstract
Cryo-electron tomography (cryo-ET) allows 3D volumes to be reconstructed from a set of 2D projection images of a tilted biological sample. It allows densities to be resolved in 3D that would otherwise overlap in 2D projection images. Cryo-ET can be applied to resolve structural features in complex native environments, such as within the cell. Analogous to single-particle reconstruction in cryo-electron microscopy, structures present in multiple copies within tomograms can be extracted, aligned, and averaged, thus increasing the signal-to-noise ratio and resolution. This reconstruction approach, termed subtomogram averaging, can be used to determine protein structures in situ. It can also be applied to facilitate more conventional 2D image analysis approaches. In this chapter, we provide an introduction to cryo-ET and subtomogram averaging. We describe the overall workflow, including tomographic data collection, preprocessing, tomogram reconstruction, subtomogram alignment and averaging, classification, and postprocessing. We consider theoretical issues and practical considerations for each step in the workflow, along with descriptions of recent methodological advances and remaining limitations.
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Affiliation(s)
- W Wan
- Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany
| | - J A G Briggs
- Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
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Wan W, Hawkins C, Hemingway J, Hughes D, Duszak R. Enteral access: evolving roles of radiologists and other providers nationally over two decades. J Vasc Interv Radiol 2016. [DOI: 10.1016/j.jvir.2015.12.463] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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Yan LL, Wan W, Chen L, Zhou F, Gong SJ, Tong X, Feng M. Exploring structural phase transitions of ion crystals. Sci Rep 2016; 6:21547. [PMID: 26865229 PMCID: PMC4749997 DOI: 10.1038/srep21547] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2015] [Accepted: 01/27/2016] [Indexed: 11/09/2022] Open
Abstract
Phase transitions have been a research focus in many-body physics over past decades. Cold ions, under strong Coulomb repulsion, provide a repealing paradigm of exploring phase transitions in stable confinement by electromagnetic field. We demonstrate various conformations of up to sixteen laser-cooled (40)Ca(+) ion crystals in a home-built surface-electrode trap, where besides the usually mentioned structural phase transition from the linear to the zigzag, two additional phase transitions to more complicated two-dimensional configurations are identified. The experimental observation agrees well with the numerical simulation. Heating due to micromotion of the ions is analysed by comparison of the numerical simulation with the experimental observation. Our investigation implies very rich and complicated many-body behaviour in the trapped-ion systems and provides effective mechanism for further exploring quantum phase transitions and quantum information processing with ultracold trapped ions.
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Affiliation(s)
- L. L. Yan
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan, 430071, China
- University of the Chinese Academy of Sciences, Beijing 100049, China
| | - W. Wan
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan, 430071, China
- University of the Chinese Academy of Sciences, Beijing 100049, China
| | - L. Chen
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan, 430071, China
| | - F. Zhou
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan, 430071, China
| | - S. J. Gong
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan, 430071, China
- University of the Chinese Academy of Sciences, Beijing 100049, China
| | - X. Tong
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan, 430071, China
| | - M. Feng
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan, 430071, China
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Li Y, Wang L, Ge J, Wang J, Li Q, Wan W, Zhang B, Liu X, Xue W. Graphene quantum dots modified ZnO + Cu heterostructure photocatalysts with enhanced photocatalytic performance. RSC Adv 2016. [DOI: 10.1039/c6ra15707f] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
GQDs surface modified ZnO + Cu heterostructure photocatalysts was prepared via a simple spin-coating and annealing process, which exhibits enhanced photocatalytic performance.
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Affiliation(s)
- Yan Li
- School of Materials Science and Engineering
- University of Science and Technology Beijing
- Beijing 100083
- China
| | - Lifeng Wang
- School of Materials Science and Engineering
- University of Science and Technology Beijing
- Beijing 100083
- China
| | - Juan Ge
- School of Materials Science and Engineering
- University of Science and Technology Beijing
- Beijing 100083
- China
| | - Jun Wang
- School of Materials Science and Engineering
- University of Science and Technology Beijing
- Beijing 100083
- China
| | - Qiyao Li
- School of Materials Science and Engineering
- University of Science and Technology Beijing
- Beijing 100083
- China
| | - Wan Wan
- School of Materials Science and Engineering
- University of Science and Technology Beijing
- Beijing 100083
- China
| | - Boping Zhang
- School of Materials Science and Engineering
- University of Science and Technology Beijing
- Beijing 100083
- China
| | - Xiaoguang Liu
- School of Materials Science and Engineering
- University of Science and Technology Beijing
- Beijing 100083
- China
| | - Wendong Xue
- School of Materials Science and Engineering
- University of Science and Technology Beijing
- Beijing 100083
- China
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Wan W. 506P Simulation modeling of lung cancer screening cost-effectiveness analysis. Ann Oncol 2015. [DOI: 10.1093/annonc/mdv535.01] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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44
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Kim JY, Kim JW, Wan W. Design of in-flight fragment separator using high-power primary beams in the energy of a few hundred MeV/u. Rev Sci Instrum 2015; 86:073302. [PMID: 26233367 DOI: 10.1063/1.4923284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
An in-flight fragment separator usually requires large acceptance and high momentum resolution to minimize the loss of a rare isotope beam of interest produced at a thin target, which is especially important when (238)U fission reactions in the energy of 200 MeV/u are used. The production target and beam dump are located in the pre-separator, where a beam power of up to 400 kW is dissipated. The area is surrounded by thick radiation shielding walls, which result in long drift spaces between adjacent magnetic components at various locations and an asymmetrical layout. Efforts have been made to minimize non-linear effects in the pre-separator beam optics with trials of different separator configurations and correction schemes using COSY Infinity and GICOSY. The main separator is configured to be mirror symmetric such that correction with hexapole and octupole coils can be more readily applied. The separator configuration was finalized to allow the facility design to proceed and the key components including superconducting magnets have been designed and prototyped. In addition, the separator design has been evaluated using LISE++ including a set of wedge degraders at dispersive focal planes to improve the yield and purity of selected isotope beam.
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Affiliation(s)
- J Y Kim
- Institute for Basic Science, Yuseong, Daejeon 305-811, South Korea
| | - J W Kim
- Institute for Basic Science, Yuseong, Daejeon 305-811, South Korea
| | - W Wan
- Lawrence Berkeley Laboratory, Berkeley, California 94720, USA
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Wan W, Xu X, Zhao DB, Pang YF, Wang YX. Polymorphisms of uric transporter proteins in the pathogenesis of gout in a Chinese Han population. Genet Mol Res 2015; 14:2546-50. [PMID: 25867401 DOI: 10.4238/2015.march.30.13] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
In this study, we analyzed single nucleotide polymorphisms (SNP) in urate transporter genes to examine the pathogenesis of gout. We conducted a 1:1-matched case-control study that included 110 patients with acute gout attacks as the patient group and 110 healthy age- and gender-matched subjects as the control group. Clinical parameters were recorded and blood biochemistry tests were conducted for both groups. Multivariate logistic regression analysis was used to analyze the data. Hyperuricemia, hypercholesterolemia, and hypertriglyceridemia were found to be the main risk factors for the onset of gout, with relative risks of 29.2 (P < 0.001), 25.5 (P = 0.003), and 11.2 (P < 0.001). For all detected SNP, rs2231142, located in ABCG2, showed the largest frequency differences for the G/G, G/T, and T/T genotypes between groups: the distribution of these genotypes in the case group was 22, 49, and 26 individuals, respectively, and was 54, 38, and 9 individuals, respectively, in the control group. There was a statistically significant difference between the 2 groups (P < 0.001) and the odds ratio was 7.091 (95% confidence interval = 2.867-17.541). Other SNPs (rs1165196, rs1165205, rs1183201, rs17300741, rs2078267, rs2242206, rs3733591, and rs9358856) showed no significant difference between the groups (P > 0.05). The risk factors of gout were hyperuricemia, hypercholesterolemia, hypertriglyceridemia, and the T/T genotype of the rs2231142 locus in the ABCG2 gene; expression of the G/G genotype may be a protective factor against gout development.
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Affiliation(s)
- W Wan
- Department of Rheumatology and Immunology, Shanghai Hospital of Second Military Medical University, Shanghai, China
| | - X Xu
- Department of Rheumatology and Immunology, Shanghai Hospital of Second Military Medical University, Shanghai, China
| | - D B Zhao
- Department of Rheumatology and Immunology, Shanghai Hospital of Second Military Medical University, Shanghai, China
| | - Y F Pang
- Department of Rheumatology and Immunology, Shanghai Hospital of Second Military Medical University, Shanghai, China
| | - Y X Wang
- Department of Rheumatology and Immunology, Shanghai Hospital of Second Military Medical University, Shanghai, China
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Wen C, Wan W, Li FH, Tang D. Restoring defect structures in 3C-SiC/Si (001) from spherical aberration-corrected high-resolution transmission electron microscope images by means of deconvolution processing. Micron 2015; 71:22-31. [PMID: 25637810 DOI: 10.1016/j.micron.2014.12.008] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2014] [Revised: 12/28/2014] [Accepted: 12/28/2014] [Indexed: 10/24/2022]
Abstract
The [110] cross-sectional samples of 3C-SiC/Si (001) were observed with a spherical aberration-corrected 300 kV high-resolution transmission electron microscope. Two images taken not close to the Scherzer focus condition and not representing the projected structures intuitively were utilized for performing the deconvolution. The principle and procedure of image deconvolution and atomic sort recognition are summarized. The defect structure restoration together with the recognition of Si and C atoms from the experimental images has been illustrated. The structure maps of an intrinsic stacking fault in the area of SiC, and of Lomer and 60° shuffle dislocations at the interface have been obtained at atomic level.
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Affiliation(s)
- C Wen
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China; School of Science, Southwest University of Science and Technology, Mianyang 621010, China
| | - W Wan
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
| | - F H Li
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China.
| | - D Tang
- FEI Company, Achtseweg Noord 5, 5651 GG Eindhoven, The Netherlands
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Feng J, Nasiatka J, Wan W, Vecchione T, Padmore HA. A novel system for measurement of the transverse electron momentum distribution from photocathodes. Rev Sci Instrum 2015; 86:015103. [PMID: 25638118 DOI: 10.1063/1.4904930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2014] [Accepted: 12/08/2014] [Indexed: 06/04/2023]
Abstract
The transverse momentum of electrons produced by a photocathode contributes significantly to the performance of several different types of accelerator-based light sources, such as Free Electron Lasers, as well as systems designed for ultrafast electron diffraction and dynamic transmission electron microscopy. Minimization of the transverse emittance from photocathodes is the subject of intensive research, and therefore measurement of this parameter is of great importance. Here, we describe a simple system that offers real time measurements of transverse emittance and can be easily integrated into the photocathode fabrication process.
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Affiliation(s)
- J Feng
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - J Nasiatka
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - W Wan
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - T Vecchione
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - H A Padmore
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
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Wang J, Li Y, Ge J, Zhang BP, Wan W. Improving photocatalytic performance of ZnO via synergistic effects of Ag nanoparticles and graphene quantum dots. Phys Chem Chem Phys 2015; 17:18645-52. [DOI: 10.1039/c5cp02352a] [Citation(s) in RCA: 56] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A Ag–graphene quantum dots (GQDs)–ZnO ternary photocatalyst was prepared using GQDs as both a reducing agent and a cation solvent. Photodegradation performance was improved because of the synergic effect of Ag and GQDs.
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Affiliation(s)
- Jun Wang
- School of Materials Science and Engineering
- University of Science and Technology Beijing
- Beijing 100083
- China
| | - Yan Li
- School of Materials Science and Engineering
- University of Science and Technology Beijing
- Beijing 100083
- China
| | - Juan Ge
- School of Materials Science and Engineering
- University of Science and Technology Beijing
- Beijing 100083
- China
| | - Bo-Ping Zhang
- School of Materials Science and Engineering
- University of Science and Technology Beijing
- Beijing 100083
- China
| | - Wan Wan
- School of Materials Science and Engineering
- University of Science and Technology Beijing
- Beijing 100083
- China
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Abstract
We report a dopamine-based crosslinker-conjugated gelatin/polycaprolactone nanofibrous sheet. The nanosheet was then employed to treat stomach incisions without sutures during surgery.
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Affiliation(s)
- J. Jiang
- Department of Mechanical Engineering
- University of Manitoba
- Winnipeg MB
- Canada
- Department of Biochemistry and Medical Genetics
| | - W. Wan
- Department of Mechanical Engineering
- University of Manitoba
- Winnipeg MB
- Canada
| | - L. Ge
- Department of Mechanical Engineering
- University of Manitoba
- Winnipeg MB
- Canada
| | - S. Bu
- Jiangsu Province Hospital Affiliated with Nanjing Medical University
- Nanjing 210029
- China
| | - W. Zhong
- Department of Biosystem Engineering
- University of Manitoba
- Canada
| | - M. Xing
- Department of Mechanical Engineering
- University of Manitoba
- Winnipeg MB
- Canada
- Department of Biochemistry and Medical Genetics
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Tarawneh H, Steier C, Falcone R, Robin D, Nishimura H, Sun C, Wan W. ALS-II, a Potential Soft X-ray, Diffraction Limited Upgrade of the Advanced Light Source. ACTA ACUST UNITED AC 2014. [DOI: 10.1088/1742-6596/493/1/012020] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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