Black soldier fly larvae bioconversion and subsequent composting promote larval frass quality during pig and chicken manure transformation process

This research systematically assessed the changes in carbon, nitrogen and microbial profiling during pig and chicken manure transformation by black soldier fly larvae (BSFL) and subsequent composting process. BSFL had higher conversion efficiency for chicken manure. The pH, phosphorus and potassium contents in fresh BSFL frass increased than raw manure, but conductivity, total-/nitrate-/ammonium-nitrogen decreased. After BSFL conversion, pig manure had a larger nitrogen loss (25 %) while chicken manure had a larger carbon loss (32 %). During subsequent composting, the indicator changes (e.g. humus, ammonium nitrogen) in frass composts basically remained stable after 20-30 days. Compared to natural composts, frass composts had higher humification degree, cellulase activities, and more cellulose-degrading bacteria. Subsequent composting further reduced potential pathogens (reduced by 98.9 %-99.7 % than raw manure), and elevated the aromaticity and humification of frass. The findings gave an insight into the maturation management of manure-sourced insect frass.

Community coalescence and plant host filtering determine the spread of tetracycline resistance genes from pig manure into the microbiome continuum of the soil-plant system

The spread of livestock manure-borne antibiotic resistance genes (ARGs) into agroecosystems through manure application poses a potential threat to human health. However, there is still a knowledge gap concerning ARG dissemination in coalescing manure, soil and plant microbiomes. Here, we examined the fate of tetracycline resistance genes (TRGs) originating from pig manure microbiomes and spread in the soil-A thaliana system and explored the effects of microbial functions on TRGs spread at different interfaces. Our results indicate that the TRGs abundances in all microbiome continuum of the soil-A. thaliana system were significantly increased with the application of a living manure microbiome, although the addition of manure with both an active and inactive microbiome caused a shift in the microbial community composition. This was attributed to the increasing relative abundances of tetA, tetL, tetM, tetO, tetW and tolC in the system. The application of living manure with DOX residues resulted in the highest relative abundance of total TRGs (3.30×10-3 copies/16S rRNA gene copies) in the rhizosphere soil samples. Community coalescence of the manure and soil microbiomes increased the abundance of Firmicutes in the soil and root microbiome, which directly explains the increase in TRG abundance observed in these interfaces. In contrast, the leaf microbiome differed markedly from that of the remaining samples, indicating strong plant host filtering effects on Firmicutes and TRGs from pig manure. The random forest machine learning model revealed microbial functions and their significant positive correlation with TRG abundance in the microbiome continuum of the system. Our findings revealed that community coalescence is the main driver of TRG spread from manure to the soil and root microbiomes. Plant host filtering effects play a crucial role in allowing certain microbial groups to occupy ecological niches in the leaves, thereby limiting the establishment of manure-borne TRGs in aboveground plant tissues.

Zeolite application mitigates NH3 and N2O emissions from pig slurry-applied field and improves nitrogen use efficiency in Italian ryegrass-maize crop rotation system for forage production

The present study aimed to assess the efficiency of zeolite in mitigating the nitrogen (N) losses through ammonia (NH3) and nitrous oxide (N2O) emissions from pig slurry (PS) applied to Italian ryegrass (IRG)-maize fields under a crop rotation system and the consequent effect on nitrogen use efficiency (NUE) for forage production. PS was applied at rates of 150 and 200 kg N ha-1 for the IRG and maize growing seasons, respectively, with or without zeolite. Soil mineral N content and NH3 and N2O emissions were measured periodically throughout the year-round cultivation of IRG and maize. Forage yield and nutritional composition were also analyzed at the harvest time of each crop. The PS with/without zeolite application effects were interpreted by comparison with those obtained for the negative control (no-N fertilization). Soil ammonium (NH4+) content in the PS-applied plots sharply increased within the first week, then progressively decreased in both the IRG and maize growing seasons. Soil NH4+ contents in the zeolite-amended plots were higher compared to the treatment without zeolite except for the first 1 or 2 weeks after PS application when soil nitrate (NO3-) contents significantly decreased. The increase in soil NH4+ content as affected by zeolite application was more distinct in the maize growing season than in the IRG growing season. NH3 emission was predominant at the early 2 weeks after PS application. Zeolite application reduced the cumulative emission of NH3 from PS by 16.7% and 24.4% and that of N2O by 15.6% and 31.5% in the IRG growing and maize growing seasons, respectively. NUE for dry matter (DM) and total digestible nutrients (TDN) production significantly improved in annual yield basis of the IRG-maize cropping. Zeolite application in PS-applied field may represent effective management in mitigating N losses through odorous NH3 and greenhouse gas (N2O) emissions, thereby improving NUE forage production.

Data of slurry quality, soil chemistry and crop yield and composition from a field experiment established 2011 comparing digested and undigested slurry

The article presents relevant data from a long-term field experiment in Norway, comparing anaerobically digested and undigested slurry from organically managed dairy cows since 2011. Both the undigested and digested slurry originated from the same herd of cows and heifers. The dataset includes chemical analyses of slurry, soil characteristics at plot level of pH, extractable nutrients, and loss on ignition; crop yields, botanical composition (some years), and plant mineral composition (some years). These data supplement the findings presented and discussed in the research article Anaerobic digestion of dairy cattle slurry - long-term effects on crop yields and chemical soil characteristics[1].

Occurrence and dissemination of antibiotic resistance genes in the Yellow River basin: focused on family farms

As an emerging contaminant, antibiotic resistance genes (ARGs) have attracted growing attention, owing to their widespread dissemination and potential risk in the farming environment. However, ARG pollution from family livestock farms in the Yellow River basin, one of the main irrigation water sources in the North China Plain, remains unclear. Herein, we targeted 21 typical family farms to assess the occurrence patterns of ARGs in livestock waste and its influence on ARGs in receiving environment by real-time quantitative PCR (qPCR). Results showed that common ARGs were highly prevalent in family livestock waste, and tet-ARGs and sul-ARGs were the most abundant in these family farms. Most ARG levels in fresh feces of different animals varied, as the trend of chicken farms (broilers > laying hens) > swine farms (piglets > fattening pigs > boars and sows) > cattle farms (dairy cattle > beef cattle). The effect of natural composting on removing ARGs for chicken manure was better than that for cattle manure, while lagoon storage was not effective in removing ARGs from family livestock wastewater. More troublesomely, considerable amounts of ARGs were discharged with manure application, further leading to the ARG increase in farmland soil (up to 58-119 times), which would exert adverse impacts on human health and ecological safety.

Prioritized regional management for antibiotics and heavy metals in animal manure across China

High levels of antibiotics and heavy metals in animal manure pose a potential threat to both the ecological environment and public health. A regional knowledge of their distribution and risk assessment across China remains unclear. A dataset containing 4082 records covering a total of forty-two antibiotics and eight heavy metals was established for animal manure across China. The results showed that the residual concentration of antibiotics was in the order of tetracyclines > aminoglycosides > fluoroquinolones > macrolides > sulfonamides > β-lactams, and that of heavy metals is Zn > Cu > Cr > Pb > Ni > As > Cd > Hg. The mean concentration of antibiotics and heavy metals was higher in pig manure compared to chicken and cow manure (Kruskal-Wallis test). The lowest level of antibiotics was observed in Northwest China based on geographic distribution characteristics. It was related to the high ratio of cow and sheep farming that less antibiotics were administered to. The pollution status of heavy metals was more severe in East China. Furthermore, high correlations were observed between antibiotics (tetracyclines) and heavy metals (Cu, Zn, and As). Especially, tetracycline in North China and Cd in Northeast China exhibited a high risk in manure; thus, they were priority regions for antibiotics/heavy metals pollution control. This study identified risk assessment of typical antibiotics and heavy metals in animal manure and emphasized the necessity of regional management across China.

A Review on Performance Improvement of Anaerobic Digestion Using Co-Digestion of Food Waste and Sewage Sludge

Anaerobic co-digestion (AcoD) is a vital technology in the decarburization of the economy because of its ability to process organic waste, recover nutrients, and create biogas as a sustainable biofuel all at the same time. This attribute also makes this technology a viable partner in pursuing a circular economic model. However, the poor biogas output of typical substrates like sewage sludge and animal manure and the hefty installation costs limit its viability. This review paper with literature analysis provides a good grasp of the anaerobic co-digesting process with diverse food digestion methods. In this survey, we have analyzed the Anaerobic Digestion of water waste, food waste, and animal manure and the anaerobic co-digestion of animal waste with water waste and food waste with water waste. This analysis demonstrates that anaerobic co-digestion produces more methane biogas than anaerobic digestion. Also, it has been shown that by adjusting the ratio of food and animal waste to water waste, we can produce more methane. In the future, we would like to supplement anaerobic co-digestion by altering the proportion of different wastes that are mixed with water waste in order to increase methane production.

Hyper-thermophilic anaerobic pretreatment enhances the removal of transferable oxazolidinone and phenicol cross-resistance gene optrA in enterococci

The extensive use of florfenicol in poultry industry results in the emergence of optrA gene, which also confers resistance to clinically important antibiotic linezolid. This study investigated the occurrence, genetic environments, and removal of optrA in enterococci in mesophilic (37 °C) and thermophilic (55 °C) anaerobic digestion systems, and a hyper-thermophilic (70 °C) anaerobic pretreatment system for chicken waste. A total of 331 enterococci were isolated and analyzed for antibiotic resistance against linezolid and florfenicol. The optrA gene was frequently detected in enterococci from chicken waste (42.7%) and effluents from mesophilic (72%) and thermophilic (56.8%) reactors, but rarely detected in the hyper-thermophilic (5.8%) effluent. Whole-genome sequencing revealed that optrA-carrying Enterococcus faecalis sequence type (ST) 368 and ST631 were the dominant clones in chicken waste, and they remained dominant in mesophilic and thermophilic effluents, respectively. The plasmid-borne IS1216E-fexA-optrA-erm(A)-IS1216E was the core genetic element for optrA in ST368, whereas chromosomal Tn554-fexA-optrA was the key one in ST631. IS1216E might play a key role in horizontal transfer of optrA due to its presence in different clones. Hyper-thermophilic pretreatment removed enterococci with plasmid-borne IS1216E-fexA-optrA-erm(A)-IS1216E. A hyper-thermophilic pretreatment is recommended for chicken waste to mitigate dissemination of optrA from animal waste to the environment.

Soil water use efficiency under integrated soil management practices in the drylands of Kenya

Soil moisture scarcity and soil fertility decline in the drylands contribute to declining crop productivity. The possible synergistic effects of integrating soil & water conservation, and soil fertility management practices on soil moisture, and hence water use efficiency (WUE) in the drylands of Tharaka-Nithi County in Kenya was assessed. The experiment was laid in a three by three split plot arrangement, with four replications, for four cropping seasons. Minimum tillage with mulch, tied ridges, and conventional tillage formed the main plot factors. The sub-plot factors included animal manure plus fertilizer at 120, 60, and 30 N kg ha^-1. There was significant improvement in soil moisture by 35 and 28% by minimum tillage with mulch and tied ridges, respectively, compared to conventional tillage. Manure plus fertilizer rates of 120 and 60 N kg ha^-1 had significantly lower soil moisture by 12 and 10%, respectively than the 30 N kg ha^-1 across the seasons. The WUE was significantly enhanced by 150 and 65% under minimum tillage with mulch and tied ridges, respectively, compared to conventional tillage. Compared with 30 N kg ha^-1, the 120 N kg ha^-1 and 60 kg ha^-1 significantly enhanced the WUE by 66 and 25%, respectively. Across the seasons, the best treatment combination for improving WUE was minimum tillage with mulch at 120 N kg ha^-1 rate of manure plus fertilizer.

Impact of long-term fertilization on phosphorus fractions and manganese oxide with their interactions in paddy soil aggregates

One under-studied microelement, manganese (Mn), due to its potential to considerably interact, and limit labile, and moderately-labile soil phosphorus (P) pools, was studied in Nanchang (NC), and Qiyang (QY) under paddy conditions. The Hedley's P sequential fractionation procedure was utilized to extract, and quantify various P fractions at both surface (0-20 cm) and subsurface (20-40 cm) layers. Unfertilized control (CK), nitrogen, phosphorus, and potassium (NPK), and NPK amended with animal manure (NPKM) were used as treatments. From both sites, the manure amended fertilizer (NPKM) compared to chemical NPK formed higher proportions of macro-aggregates (>2 and 2-0.25 mm) in both layers. Total P (TP) values of 842.1 (>2 mm), and 744.4 mg kg^-1 (2-0.25 mm) from NC, and QY, respectively were accumulated by NPKM compared to NPK, and CK. Total P values of 806.4, and 350.4 mg kg^-1 in the >2 mm aggregate size, respectively for NC, and QY were observed in the subsurface layer. Inorganic moderately labile P (NaOH-P_i) was the dominant fraction under all fertilizer treatments. Concentrations of 232.3 (<0.053 mm), and 202.1 mg kg^-1 (0.25-0.053 mm) of NaOH-P_i were accumulated by NPKM, respectively for NC, and QY in the surface layer. In the subsurface layer, concentrations of NaOH-P_i (217.5 mg kg^-1; <0.053 mm) from NC, and residual-P (57.3 mg kg^-1; >2 mm) from QY were accumulated by NPKM. Similarly, NPKM in contrast to NPK contributed higher Mehlich-3 manganese (M3-Mn) oxide in all aggregate sizes from both sites. Generally, macro-aggregates contributed higher TP, fractions of P, and M3-Mn oxide than micro-aggregates. There was a positive relationship between P pools and M3-Mn oxide at both sites. Additions of animal manure were associated with increased P fractions, and Mn oxides in the paddy soil aggregates, which raises environmental concern.

Acidification of slurry to reduce ammonia and methane emissions: Deployment of a retrofittable system in fattening pig barns

Livestock farming, and in particular slurry management, is a major contributor to ammonia (NH₃) and methane (CH₄) emissions in Europe. Furthermore, reduced NH₃ and CH₄ emissions are also relevant in licensing procedures and the management of livestock buildings. Therefore, the aim is to keep emissions from the barn as low as possible. Acidification of slurry in the barn can reduce these environmental and climate-relevant emissions by a pH value of 5.5. In this study, an acidification technology was retrofitted in an existing fattening pig barn equipped with a partially slatted floor. The slurry in a compartment with 32 animals was acidified. An identical compartment was used for reference investigations (case-control approach). Several times a week slurry was pumped for acidification in a process tank outside the barn compartment in a central corridor, where sulphuric acid (H₂SO₄) was added. Then the slurry was pumped back into the barn. In contrast to other systems, where acidified slurry was stored mainly in external storage tanks, in this study the slurry was completely stored in the slurry channels under the slatted floor, during the entire fattening period. The emission mass flow of NH₃ and CH₄ was measured continuously over three fattening periods, with one period in spring and two periods in summer. On average 17.1 kg H₂SO₄ (96%) (m³ slurry)^-1 were used for acidification during the three fattening periods. NH₃ and CH₄ emissions were reduced by 39 and 67%, respectively. The hydrogen sulphide (H₂S) concentration in the barn air of the acidification compartment was harmlessly low (0.02 ppm). Thus, despite the storage of the acidified slurry in the barn, the system leads to a lower concentration of detrimental gases, which is beneficial for the animals' as well as for the workers' health. The study shows that it is possible to retrofit acidification technology into existing pig barns. Further investigations shall identify possible measures to reduce the amount of H₂SO₄ used and thus minimise the sulphur input into the slurry.

Nutrient concentrations affect the antimicrobial resistance profiles of cattle manures

Antimicrobial resistance (AMR) in cattle is widespread because of the increased use of antibiotics to combat microbial diseases and enhance milk production. The cattle excreta released into the environment can be a potent source of contamination in spreading antibiotic resistance, especially upon its application in agriculture. However, the correlation of AMR profile of manure with other physico-chemical parameters is limited. Therefore, the study aimed to generate AMR profiles for manure samples collected from 25 different sites of two agriculturally important states in India, Madhya Pradesh and Uttar Pradesh. Samples were tested for physico-chemical parameters, viz., electrical conductivity, pH, total nitrogen (N), total phosphorus (P), and total potassium (K). Bacterial community analysis was done by culture-dependent and culture-independent methods. The influence of feeding practices, nutrient concentration, and bacterial abundance on antibiotic resistance profiles was observed in collected manure samples. Manures of intensive feeding animals harbored highly resistant profiles of bacteria as compared to natural grazing cattle.

Animal manure as a biostimulant in bioremediation of oil-contaminated soil: the role of earthworms

Human dire need for environmental sustainability have triggered researchers to seek for organic substrates as an alternative to synthetic fertilizers in order to enhance bioremediation. Presently, nitrogen-rich organic substrate not only proffered the solution but also have proven useful in enhancing the rate of bioremediation. Animal manure is a nitrogen-rich organic substrate which has been found very effective for stimulating plant growth. Some of the animal manure used by researchers are poultry droppings, cow dung, goat manure, and pig manure. In all the papers reviewed, it was gathered that animal manure enhances bioremediation by providing nutrients favoring microbial growth and activities responsible hydrocarbon degradation. However, of the four commonly used animal manure, poultry droppings was severally reported to be a better biostimulant. Also, animal manure when sun-dried and pulverized yielded better results. It was observed that animal manure serves as substrates for earthworms which further accelerates the potential of the earthworms to remediate the soil. Also, the pollution of soil by crude oil causes a surge in its carbon content which may slow down microbial growth and activities. Thorough review of literatures, however, indicates that animal manure is capable of providing appropriate nutrient concentrations to offset such imbalance. Studies continue to lay credence to the efficacy of animal manure in enhancing microbial growth and activities responsible for the biodegradation of hydrocarbons contained in crude oil. Furthermore, the co-application of animal manure with other bioremediation strategies, such as phytoremediation and vermiremediation, should be combined for effective bioremediation of oil-contaminated environment.

Review on fate and bioavailability of heavy metals during anaerobic digestion and composting of animal manure

Anaerobic digestion and composting are attracting increasing attention due to the increased production of animal manure. It is essential to know about the fate and bioavailability of heavy metals (HMs) for further utilisation of animal manure. This review has systematically summarised the migration of HMs and the transformation of several typical HMs (Cu, Zn, Cd, As, and Pb) during anaerobic digestion and composting. The results showed that organic matter degradation increased the HMs content in biogas residue and compost (with the exception of As in compost). HMs migrated into biogas residue during anaerobic digestion through various mechanisms. Most of HMs in biogas residue and compost exceeded relevant standards. Then, anaerobic digestion increased the bioavailable fractions proportion in Zn and Cd, decreased the F4 proportion, and raised them more than moderate environmental risks. As (III) was the main species in the digester, which extremely increased As toxicity. The increase of F3 proportion in Cu and Pb was due to sulphide formation in biogas residue. Whereas, the high humus content in compost greatly increased the F3 proportion in Cu. The F1 proportion in Zn decreased, but the plant availability of Zn in compost did not reduce significantly. Cd and As mainly converted the bioavailable fractions into stable fractions during composting, but As (V) toxicity needs to be concerned. Moreover, additives are only suitable for animal manure treated with slightly HM contaminated. Therefore, it is necessary to combine more comprehensive methods to improve the manure treatment and make product utilisation safer.

Occurrence of veterinary antibiotics in animal manure, compost, and agricultural soil, originating from different feedlots in suburbs of Shanghai, East China

The present study aims to monitor and assess the occurrence of veterinary antibiotics (VAs) in animal manure, compost, and fertilized soil, originating from different large-scale feedlots. The corresponding concentrations of 39 types of VAs in 8 large-scale feedlots of pig, dairy cow, and poultry were sampled in different seasons and analyzed using LC-MS. The results indicated that 17 types, 16 types, and 5 types of VAs were detected in the swine manure, compost, and fertilized soil with the concentrations of 0.003-17.82, 0.002-9.59, and 0.004-0.007 mg kg^-1 (dry matter), respectively; 3 types, 2 types, and 1 type of VAs were detected in the dairy manure, compost, and fertilized soil with the concentrations of 0.003-1.94, 0.014-0.044, and 0.025 mg kg^-1 (dry matter), respectively; 7 types, 5 types, and 1 type of VAs were detected in the poultry manure, compost, and fertilized soil with the concentrations of 0.035-1.06, 0.018-0.049, and 0.019 mg kg^-1 (dry matter), respectively. The main antibiotic classes persisted in the animal manure and their composting product and fertilized soil were sulfonamides (SAs), macrolides (MAs), and tetracyclines (TCs). Thus, this study would help to adopt strategies in pollution control of VAs and environmental protection of agriculture.

Metagenomic insights into the microbial community structure and resistomes of a tropical agricultural soil persistently inundated with pesticide and animal manure use

Persistent use of pesticides and animal manure in agricultural soils inadvertently introduced heavy metals and antibiotic/antibiotic resistance genes (ARGs) into the soil with deleterious consequences. The microbiome and heavy metal and antibiotic resistome of a pesticide and animal manure inundated agricultural soil (SL6) obtained from a vegetable farm at Otte, Eiyenkorin, Kwara State, Nigeria, was deciphered via shotgun metagenomics and functional annotation of putative ORFs (open reading frames). Structural metagenomics of SL6 microbiome revealed 29 phyla, 49 classes, 94 orders, 183 families, 366 genera, 424 species, and 260 strains with the preponderance of the phyla Proteobacteria (40%) and Actinobacteria (36%), classes Actinobacteria (36%), Alphaproteobacteria (18%), and Gammaproteobacteria (17%), and genera Kocuria (16%), Sphingobacterium (11%), and Brevundimonas (10%), respectively. Heavy metal resistance genes annotation conducted using Biocide and Metal Resistance Gene Database (BacMet) revealed the detection of genes responsible for the uptake, transport, detoxification, efflux, and regulation of copper, cadmium, zinc, nickel, chromium, cobalt, selenium, tungsten, mercury, and several others. ARG annotation using the Antibiotic Resistance Gene-annotation (ARG-ANNOT) revealed ARGs for 11 antibiotic classes with the preponderance of β-lactamases, mobilized colistin resistance determinant (mcr-1), macrolide-lincosamide-streptogramin (MLS), glycopeptide, and aminoglycoside resistance genes, among others. The persistent use of pesticide and animal manure is strongly believed to play a major role in the proliferation of heavy metal and antibiotic resistance genes in the soil. This study revealed that agricultural soils inundated with pesticide and animal manure use are potential hotspots for ARG spread and may accentuate the spread of multidrug resistant clinical pathogens.

Livestock manure spiked with the antibiotic tylosin significantly altered soil protist functional groups

With the increasing global antibiotic uses in livestock husbandry, animal manures upon land application pose potential threats to the environments and soil microbiome. Nevertheless, effects of manures and antibiotic-administered manures on soil protists, an integral component of soil food web and primary regulators of bacteria, remain unknown. Here, we assessed impacts of cattle and poultry manures with or without an antibiotic tylosin on soil protists and their functional groups in a 130-day microcosm incubation. Protists were highly responsive to manure application, with a significant decline in their alpha diversity in all manure treatments. There were also significant temporal changes in the alpha diversity and composition of soil protists and their functional groups. Poultry manures had stronger negative influences on the community structure of protists compared to cattle manures, and more pronounced effects on protists were observed in tylosin-spiked manure treatments. Furthermore, many consumer, phototrophic and parasitic taxa were highly susceptible to all manure treatments at Day 50 and 130. Altogether, our findings demonstrate negative effects of animal manures and tylosin on soil protists. This study suggests that the applications of livestock manures and antibiotics may subsequently alter ecological functions of protists and their interactions with other soil microorganisms in agricultural systems.

Greener production of compost from agricultural biomass residues amended with mule dung for agronomic application

In this study agro-waste (Agwt) was aerobically composted using cow dung (CD) and mule dung (MD). Totally six different sets of compost treatments were prepared, as T1 (Agwt + CD, 1:1), T2 (Agwt + MD, 1:1), T3 (Agwt + CD, 1:3), T4 (Agwt + MD, 1:3), T5 (Agwt + CD, 3:1) and T6 (Agwt + MD, 3:1) in individual containers. All the compost treatments were degraded for 90 days. The organic wastes in the treatment containers were maintained with proper moisture level. All the final composts reached good manural stability and maturity index after 90 days. Among the six treatments, the T2 with Agwt + MD in 1:1 proportion attained a 10:1 C/N ratio and a near neutral pH (7.3). Indigenous microbes isolated and identified from the T2 compost sample showed protease, cellulase, amylase and lipase activities. The germination of Raphanus sativus L. seeds and vigorous plant growth parameters confirmed the non-pathogenic phytotoxic-free nature of finished composts. The radish crops supplied with T2 compost showed healthy tuber growth parameters (16.6 cm width, 35.6 cm length) compared with other treatments. The results from the experiments established that, the composts derived are eco-friendly amendment to plants and it has also improved the soil fertility due to its stability and maturity index. Thus, the present study concluded that composting agricultural crops waste with animal manure, especially mule dung promoted excellent biodegradation of organic complexes. It is a nature friendly solution for the management of solid waste such as agro-wastes utilizing mule dung.

Distribution of antibiotic resistance genes from human and animal origins to their receiving environments: A regional scale survey of urban settings

Antibiotic resistance is a growing problem for ecosystem health and public healthcare. Hence, the transmission of antibiotic resistance from human and animal origins to natural environments requires careful investigation. In this study, nine antibiotic resistance genes (ARGs), three mobile genetic elements (MGEs), and their relations with antibiotics, heavy metals, and microbiota were investigated in 16 sample sites (Xinxiang, China). Fluoroquinolones (0.13-14.22 μg/L) were most abundant in hospital effluent and oxytetracycline (251.86-5817.47 μg/kg) in animal manure. Animal manure showed the highest levels of zinc (80.79-2597.14 mg/kg) and copper (32.47-85.22 mg/kg), possibly affecting the prevalence of intI1 and aac(6')-Ib genes. Aminoglycoside and sulfonamide resistance genes (aac(6')-Ib, aadA, and sul1) were the main ARGs in this area. In addition, the detected ARGs and MGEs were higher in animal manure than in hospital effluent, except for the sul1 gene. On the other hand, the incomplete removal of antibiotics (29.76-100%), heavy metals (31.25-100%), and ARGs (1-3 orders of magnitude) in MWWTPs resulted in the accumulation of these contaminants in the receiving river. Network analysis suggested that the potential hosts (Jeotgalibaca, Atopostipes, Corynebacterium_1, etc.) of ARGs were more predominant in animal manure rather than hospital effluent, indicating a higher ARG transfer potential in animal manure compared with hospital sources. These results provide useful insights into the different migration and dissemination routes of antibiotics, heavy metals, ARGs, and microbiota from anthropogenic and animal origins to their receiving environments via MWWTP discharge and manure fertilization.

Agronomic and financial benefits of direct Minjingu phosphate rock use in acidic humic nitisols of Upper Eastern Kenya

A major constraint to crop production in Sub-Saharan Africa is nutrient deficiency, especially phosphorus (P) deficiency. Phosphorus plays a crucial role in photosynthesis but is usually deficient in acidic soils since it is converted to less available forms, affecting crop yields. There is a need to improve phosphorus availability to crops for maximum production. This study assessed Minjingu phosphate rock fertilizer's impact on maize yields, soil chemical composition, and cost-effectiveness in acidic humic nitisols of Tharaka Nithi County, Upper Eastern Kenya. A field experiment in a randomized complete block design (RCBD) was set during long rains (SR2017) and Short rains (LR2018) seasons. The treatments were Minjingu phosphate rock, manure, Tithonia diversifolia, Minjingu phosphate rock + manure, Tithonia diversifolia + Minjingu phosphate rock, Calcium Ammonium Nitrate (CAN) + Triple Superphosphate (TSP), and a control. Soil samples were collected at a depth of 0–20 cm before and at the end of the experiment for pH, P-sorption, and other soil nutrient determinations. Other auxiliary data collected included labor and input costs besides output prices. The CAN+TSP treatment had significantly higher grain yields (6.86 Mg ha-¹), while Minjingu phosphate rock on its own had the second-lowest than the control treatment (3.0 Mg ha-¹). Also, a similar trend in the stover yields was observed. Minjingu phosphate rock combined with either manure or Tithonia diversifolia led to a significant increase (over 100%) in the phosphorous levels. Sole application of Minjingu phosphate rock increased soil iron levels while magnesium, copper, and zinc levels decreased significantly. Other than the control, all treatments significantly lowered the P-sorption levels. However, CAN+TSP had the highest P-sorption (913 mg kg⁻¹)while Tithonia diversifolia had the lowest (744 mg kg⁻¹). During the LR2018 season, all treatments reached a break-even point, and the net benefit was significantly higher at P < 0.05. Conclusively, the use of phosphate rock, either solely or in combination with organic elements, improved yields, soil chemical composition, P-sorption and was very cost-effective.

Key factors driving the fate of antibiotic resistance genes and controlling strategies during aerobic composting of animal manure: A review

Occurrence of antibiotic resistance genes (ARGs) in animal manure impedes the reutilization of manure resources. Aerobic composting is potentially effective method for resource disposal of animal manure, but the fate of ARGs during composting is complicated due to the various material sources and different operating conditions. This review concentrates on the biotic and abiotic factors influencing the variation of ARGs in composting and their potential mechanisms. The dynamic variations of biotic factors, including bacterial community, mobile genetic elements (MGEs) and existence forms of ARGs, are the direct driving factors of the fate of ARGs during composting. However, most key abiotic indicators, including pH, moisture content, antibiotics and heavy metals, interfere with the richness of ARGs indirectly by influencing the succession of bacterial community and abundance of MGEs. The effect of temperature on ARGs depends on whether the ARGs are intracellular or extracellular, which should be paid more attention. The emergence of various controlling strategies renders the composting products safer. Four potential removal mechanisms of ARGs in different controlling strategies have been concluded, encompassing the attenuation of selective/co-selective pressure on ARGs, killing the potential host bacteria of ARGs, reshaping the structure of bacterial community and reducing the cell-to-cell contact of bacteria. With the effective control of ARGs, aerobic composting is suggested to be a sustainable and promising approach to treat animal manure.

A Bayesian inference approach to quantify average pathogen loads in farmyard manure and slurry using open-source Irish datasets

Farm-to-fork quantitative microbial risk assessments (QMRA) typically start with a preliminary estimate of initial concentration (C_initial) of microorganism loading at farm level, consisting of an initial estimate of prevalence (P) and the resulting pathogen levels in animal faeces. An average estimation of the initial concentration of pathogens can be achieved by combining P estimates in animal populations and the levels of pathogens in colonised animals' faeces and resulting cumulative levels in herd farmyard manure and slurry (FYM&S). In the present study, 14 years of data were collated and assessed using a Bayesian inference loop to assess the likely P of pathogens. In this regard, historical and current survey data exists on P estimates for a number of pathogens, including Cryptosporidium parvum, Mycobacterium avium subspecies paratuberculosis (MAP), Salmonella spp., Clostridium spp., Campylobacter spp., pathogenic E. coli, and Listeria monocytogenes in several species (cattle, pigs, and sheep) in Ireland. The results revealed that Cryptosporidium spp. has potentially the highest mean P (P_mean) (25.93%), followed by MAP (15.68%) and Campylobacter spp. (8.80%) for cattle. The P_mean of E. coli is highest (7.42%) in pigs, while the P_mean of Clostridium spp. in sheep was estimated to be 7.94%. C_initial for Cryptosporidium spp., MAP., Salmonella spp., Clostridium spp., and Campylobacter spp. in cattle faeces were derived with an average of 2.69, 4.38, 4.24, 3.46, and 3.84 log₁₀ MPN g ^-1, respectively. Average C_initial of Cryptosporidium spp., Salmonella spp., Clostridium spp., and E. coli in pig slurry was estimated as 1.27, 3.12, 3.02, and 4.48 log₁₀ MPN g ^-1, respectively. It was only possible to calculate the average C_initial of Listeria monocytogenes in sheep manure as 1.86 log₁₀ MPN g ^-1. This study creates a basis for future farm-to-fork risk assessment models to base initial pathogen loading values for animal faeces and enhance risk assessment efforts.

under nickel and salinity stress

Soil contamination with readily soluble salts and heavy metals is a major challenge concerning sustainable crop production. The use of organic wastes in agriculture not only helps in waste reduction but also acts as a soil conditioner and bio-stimulant for enhancing crop growth. In this regard, a pot experiment was conducted to investigate the effect of raw and processed animal manure (AM) on the growth, yield, and physicochemical parameters of Brassica napus L. developed under salinity and Ni stress. The experiment comprised two salinity levels (1.05 and 8 dS m^-1), two Ni levels (0 and 50 mg kg^-1), and two types of AMs (raw and processed at a rate of 2% w/w). A control treatment without AM incorporation was also included. In results, the application of AM markedly increased the growth and yield of B. napus under Ni and salinity stress; at the same time, it improved the physiological and chemical parameters of the said crop. Similarly, incorporation of processed AM significantly improved nutrient uptake and decreased Na/K ratios in the shoot and grain under the different stress conditions, as compared to the control. Likewise, Ni uptake in the grain, shoot, and root samples was also significantly reduced under the AM treatment. Also, the application of AM significantly reduced the daily intake of metal (DIM) index and the health risk index (HRI) values under the different stress conditions, as compared to the control. In conclusion, the application of processed AM constitutes an effective agricultural strategy to alleviate the adverse effects of Ni and salinity stress on growth, physiology, and yield of B. napus, thus resulting in enhanced productivity, as well as reduced risks associated with human health.

Combustion behavior and mechanical properties of pellets derived from blends of animal manure and lignocellulosic biomass

This paper presents the possibility of valorization of animal manure (camel and cow) by mixing it with agro-industrial biomass (cotton stalk and rapeseed oil cake) to produce pellets for use in power generation processes. Feedstocks were mixed in specific proportions based on certain assumptions concerning the energy and mechanical parameters of pellets. The assessment concerned both the combustion behavior as well as mechanical properties of four types of pellets derived from blends of animal manure and agro-industrial biomass. Thermogravimetry (TGA) and Differential Scanning Calorimetry (DSC) techniques are applied to analyze the reaction areas, characteristic temperatures as well as heat flow rates of raw materials and their blends. Results showed that addition of agro-industrial biomass (even 10%) to animal manure changed the specific combustion parameters: initiation and burn-out temperature and combustion time. For blends of cow manure (COM) and rapeseed oil cake (ROC), a reduction in the initiation temperature was achieved compared to the combustion of raw cow manure, and the combustion time increased by 1/3. In the case of camel manure (CAM) with the addition of cotton stalk (CS) the burn-out temperature and combustion time decreased. The addition of agro-biomass also causes a change in the heat release profiles, for the blends no pronounced DSC peaks are obtained in the area of devolatilization as it happens animal manure alone and in the area of fixed carbon combustion as for cotton stalk and rapeseed oil cake. The heat released from camel manure blends was 9.2-9.3 kJ/kg and from cow manure blends 10.2-10.4 kJ/kg. An evaluation of the physical and mechanical properties showed that all types of pellets at a moisture content of 10-15% have a similar drop strength in the range of 80-85%, while this strength decreases to 40-60% after the pellets have absorbed water.

Nitrous oxide emission and sweet potato yield in upland soil: Effects of different type and application rate of composted animal manures

The aims of this study were to determine type and application rate of composted animal manure to optimize sweet potato yield relative to N₂O emissions from upland soils. To this end, the study was conducted on upland soils amended with different types and rates of composted animal manure and located at two geographically different regions of South Korea. Field trials were established at Miryang and Yesan in South Korea during the sweet potato (Ipomoea batatas) growing season over 2 years: 2017 (Year 1) and 2018 (Year 2). Three composted animal manures (chicken, cow, and pig) were applied at the rates of 0, 10, and 20 Mg ha^-1 to upland soils in both locations. In both Years and locations, manure type did not affected significantly cumulative N₂O emissions from soil during the sweet potato growing season or the belowground biomass of sweet potato. However, application rate of animal manures affected significantly the cumulative N₂O emission, nitrogen (N) in soil, and belowground biomass of sweet potato. An increase in cumulative N₂O emission with application rates of animal manures was related to total N and inorganic N concentration in soil. The belowground biomass yield of sweet potato but also the cumulative N₂O emission increased with increasing application rate of composted animal manures up to 7.6 and 16.0 Mg ha^-1 in Miryang and Yesan, respectively. To reduce N₂O emission from arable soil while increasing crop yield, composted animal manures should be applied at less than application rate that produce the maximum belowground biomass of sweet potato.

Variations in bacterial community structure and antimicrobial resistance gene abundance in cattle manure and poultry litter

Cattle manure and poultry litter are widely used as fertilizers as they are excellent sources of nutrients; however, potential adverse environmental effects exist during land applications, due to the release of zoonotic bacteria and antimicrobial resistance (AMR) genes. This study was conducted to understand linkages between physiochemical composition, bacterial diversity, and AMR gene presence of cattle manure and poultry litter using quantitative polymerase chain reaction to enumerate four AMR genes (ermB, sulI, intlI, and bla_ctx-m-32), Illumina sequencing of the 16 S region, and analysis of physical and chemical properties. Principal coordinate analysis of Bray-Curtis distance revealed distinct bacterial community structures between the two manure sources. Greater alpha diversity occurred in cattle manure compared to poultry litter (P < 0.05). Redundancy analysis showed a strong relationship between manure physiochemical and composition and bacterial abundance, with positive relationships occurring among electrical conductivity and carbon/nitrogen, and negative associations for total solids and soluble fractions of heavy metals. Cattle manure exhibited greater abundance of macrolide (ermB) and sulfonamide (sulI) resistant genes. Consequently, fresh cattle manure applications may result in greater potential spread of AMR genes to the soil-water environment (relative to poultry litter) and novel best management strategies (such as composting) may reduce the release of AMR genes to the soil-water environment.

Bacterial communities regulate temporal variations of the antibiotic resistome in soil following manure amendment

The increasing emergence of antibiotic-resistant genes (ARGs) represents a global threat to human health. Land application of animal manure is known to contribute considerably to the propagation and dispersal of antibiotic resistance in agro-ecosystems. Yet, the primary determinants of the fate of the soil resistome remain obscure. In this study, a pot experiment was conducted to examine temporal changes in ARGs, mobile genetic elements (MGEs), and bacterial communities in a weakly developed loamy soil (an entisol known as calcareous purple soil) upon addition of pig or chicken manure. On the day of manure application, substantial increases in the diversity and relative abundance of ARGs were observed in soil amended with raw pig manure. At the same time, no obvious changes were observed for soil amended with chicken manure. Antibiotic resistance in pig manure-amended soils rapidly decreased over time to a level that was still higher than that of unamended soil at 100 days after manure application. The results of the Mantel test and Procrustes analysis indicated that ARG profiles in soil were significantly correlated with the structure of the bacterial phylogeny. Variation partitioning analysis further revealed that the bacterial community played a major role in regulating the temporal changes in ARGs in soil following manure application. Increased numbers and relative abundances of MGEs and their significant positive correlations with ARGs were observed, which suggest that a potential contribution from lateral gene transfer to the persistence and spread of ARGs should not be overlooked. Overall, our findings provide a better understanding of the mechanisms underlying the dynamics of ARGs in entisols following manure application and have practical implications for managing manure applications in entisols of the study area and other areas.

Parameterization, calibration and validation of the DNDC model for carbon dioxide, nitrous oxide and maize crop performance estimation in East Africa

Dynamic biogeochemical models are crucial tools for simulating the complex interaction between soils, climate and plants; thus the need for improving understanding of nutrient cycling and reduction of greenhouse gases (GHG) from the environment. This study aimed to calibrate and validate the DeNitrification-DeComposition (DNDC) model for soil moisture, temperature, respiration, nitrous oxide and maize crop growth simulation in drier sub-humid parts of the central highlands of Kenya. We measured soil GHG fluxes from a maize field under four different soil fertility management practices for one year using static chambers and gas chromatography. Using experimental data collected from four management practices during GHG sampling period, we parameterized the DNDC model. The results indicate that the DNDC model simulates daily and annual soil moisture, soil temperature, soil respiration (CO₂), nitrous oxide (N₂O), N₂O yield-scaled emissions (YSE), N₂O emission factors (EFs) and maize crop growth with a high degree of fitness. However, the DNDC simulations slightly underestimated soil temperature (2–6%), crop growth (2–45%) and N₂O emissions (5–23%). The simulation overestimated soil moisture (9–17%) and CO₂ emissions (3–10%). It however, perfectly simulated YSE and EFs. Compared to the observed/measured annual GHG trends, the simulation results were relatively good, with an almost perfect fitting of emission peaks during soil rewetting at the onset of rains, coinciding with soil fertilisation. These findings provide reliable information in selecting best farm management practice, which simultaneously improves agricultural productivity and reduces GHG emissions, thus permitting climate-smart agriculture. The good DNDC simulated YSE and EFs values (Tier III) provide cheaper and reliable ways of filling the huge GHG data gap, reducing uncertainties in national GHG inventories and result to efficient targeting of mitigation measures in sub-Saharan Africa.

Nitrous oxide emission from agricultural soils: Application of animal manure or biochar? A global meta-analysis

Organic amendments (animal manure and biochar) to agricultural soils may enhance soil organic carbon (SOC) contents, improve soil fertility and crop productivity but also contribute to global warming through nitrous oxide (N₂O) emission. However, the effects of organic amendments on N₂O emissions from agricultural soils seem variable among numerous research studies and remains uncertain. Here, eighty-five publications (peer-reviewed) were selected to perform a meta-analysis study. The results of this meta-analysis study show that the application of animal manure enhanced N₂O emissions by 17.7%, whereas, biochar amendment significantly mitigated N₂O emissions by 19.7%. Moreover, coarse textured soils increased [lnRR‾ = 182.6%, 95% confidence interval (CI) = 151.4%, 217.7%] N₂O emission after animal manure, in contrast, N₂O emission mitigated by 7.0% from coarse textured soils after biochar amendment. In addition, this study found that 121-320 kg N ha^-1 and ⩽ 30 T ha^-1 application rates of animal manure and biochar mitigated N₂O emissions by 72.3% and 22.5%, respectively. Soil pH also played a vital role in regulating the N₂O emissions after organic amendments. Furthermore, > 10 soil C: N ratios increased N₂O emissions by 121.4% and 27.6% after animal and biochar amendments, respectively. Overall, animal manure C: N ratios significantly enhanced N₂O emissions, while, biochar C: N ratio had not shown any effect on N₂O emissions. Overall, average N₂O emission factors (EFs) for animal manure and biochar amendments were 0.46% and -0.08%, respectively. Thus, the results of this meta-analysis study provide scientific evidence about how organic amendments such as animal manure and biochar regulating the N₂O emission from agricultural soils.

Environmental implications of stored cattle slurry treatment with sulphuric acid and biochar: A life cycle assessment approach

With the increase of animal slurry produced from livestock production, the monitoring and mitigation of greenhouse gas (GHG) and ammonia (NH₃) emissions represent a major issue. Life cycle assessment (LCA) has been used to evaluate the long-term environmental effects of applied strategies and technologies on cattle slurry management for mitigation of environmental harmful gases. This study was carried on two main aims: first, the effect of the addition of sulphuric acid (SA), biochar (SBi) or A + Bi to liquid cattle-slurry (treated systems) on gas emissions during storage compared to the untreated system (S) was investigated in a laboratory-controlled experiment; second, the environmental implications of each treated or untreated system were assessed through a LCA approach according to ISO 14040/44. Five CML 2001 impact categories were used: eutrophication potential (EP), acidification potential (AP), global warming potential (GWP), human toxicity potential (HTP) and Ozone Layer Depletion Potential (ODP). Comparisons were based on 1 ton fresh dairy cattle slurry. The environmental profile of untreated system showed lower efficiency in mitigation of total GHG and NH₃ emissions (0.0312 and 0.0001 kg CO₂-eq respectively), during storage period and greater impact on GWP and HTP categories. The electricity consumption in mechanical separation dominated the environmental impacts. From the three proposed treated systems, SA showed the highest efficiency on mitigation of gas emissions compared to the other treatments, reducing NH₃, CH₄ and CO₂ emissions respectively in 61%, 98% and 15%, when compared to the SBi system. In all categories, acidified slurry also showed the lowest environmental impact relative to other treated systems and the benefit was more evident when the impacts were expressed per kilogram of nitrogen in the slurry. Therefore, LCA methodology was of great importance to assess the environmental implications of the treatments and acidification can be considered as an effective technique on the mitigation of environmental implications of livestock production and cattle-effluent valorization. Optimization and uniformity of performed studies are essential to validate new strategies to improve the sustainability of this sector in the management of animal wastewater.

Comparative role of animal manure and vegetable waste induced compost for polluted soil restoration and maize growth

Soil amendment with two types of composts: animal manure (AC) and vegetable waste (VC) induced composts have potential to alleviate Cd toxicity to maize in contaminated soil. Therefore, Cd mobility in waste water irrigated soil can be addressed through eco-friendly and cost effective organic soil amendments AC and VC that eventually reduces its translocation from polluted soil to maize plant tissues. The comparative effectiveness of AC and VC at 3% rate were evaluated on Cd solubility, its accumulation in maize tissues, translocation from root to shoot, chlorophyll contents, plant biomass, yield and soil properties (pH, NPK, OM). Results revealed that the addition of organic soil amendments significantly minimized Cd mobility and leachability in soil by 58.6% and 47%, respectively in VC-amended soil over control. While, the reduction was observed by 61.7% and 57%, respectively when AC was added at 3% over control. Comparing the control soil, Cd uptake effectively reduced via plants shoots and roots by 50%, 46% respectively when VC was added in polluted soil. However, Cd uptake was decreased in maize shoot and roots by 58% and 52.4% in AC amended soil at 3% rate, respectively. Additionally, NPK contents were significantly improved in polluted soil as well as in plant tissues in both composts amended soil Comparative to control, the addition of composts significantly improved the maize dry biomass and chlorophyll contents at 3% rate. Thus, present study confirmed that the addition of animal manure derived compost (AC) at 3% rate performed well and might be consider the suitable approach relative to vegetable compost for maize growth in polluted soil.

Antimicrobial resistant gene prevalence in soils due to animal manure deposition and long-term pasture management

The persistence of antimicrobial resistant (AMR) genes in the soil-environment is a concern, yet practices that mitigate AMR are poorly understood, especially in grasslands. Animal manures are widely deposited on grasslands, which are the largest agricultural land-use in the United States. These nutrient-rich manures may contain AMR genes. The aim of this study was to enumerate AMR genes in grassland soils following 14-years of poultry litter and cattle manure deposition and evaluate if best management practices (rotationally grazed with a riparian (RBR) area and a fenced riparian buffer strip (RBS), which excluded cattle grazing and poultry litter applications) relative to standard pasture management (continuously grazed (CG) and hayed (H)) minimize the presence and amount of AMR genes. Quantitative PCR (Q-PCR) was performed to enumerate four AMR genes (ermB, sulI, intlI, and bla_ctx-m-32 ) in soil, cattle manure, and poultry litter environments. Six soil samples were additionally subjected to metagenomic sequencing and resistance genes were identified from assembled sequences. Following 14-years of continuous management, ermB, sulI, and intlI genes in soil were greatest (P < 0.05) in samples collected under long-term continuous grazing (relative to conservation best management practices), under suggesting overgrazing and continuous cattle manure deposition may increase AMR gene presence. In general, AMR gene prevalence increased downslope, suggesting potential lateral movement and accumulation based on landscape position. Poultry litter had lower abundance of AMR genes (ermB, sulI, and intlI) relative to cattle manure. Long-term applications of poultry litter increased the abundance of sulI and intlI genes in soil (P < 0.05). Similarly, metagenomic shotgun sequencing revealed a greater total number of AMR genes under long-term CG, while fewer AMR genes were found in H (no cattle manure) and RBS (no animal manure or poultry litter). Results indicate long-term conservation pasture management practices (e.g., RBS and RBR) and select animal manure (poultry litter inputs) may minimize the presence and abundance of AMR genes in grassland soils.

A review on application of enzymatic bioprocesses in animal wastewater and manure treatment

Enzymatic processing has been considered an interesting technology as enzymes play important roles in the process of waste bioconversion, whilst heling to develop valuable products from animal wastes. In this paper, the application of enzymes in animal waste management were critically reviewed in short with respect to utilization in: (i) animal wastewater treatment and (ii) animal manure management. The results indicate that the application of enzymes could increase both chemical oxygen demand (COD) removal efficiency and production of biogas. The enzymatic bioprocesses were found to be affected by the type, source and dosage of enzymes and the operating conditions. Further studies on optimizing the operating conditions and developing cost-effective enzymes for the future large-scale application are therefore necessary.

Antibiotics in animal manure and manure-based fertilizers: Occurrence and ecological risk assessment

The extensive use of antibiotics globally and their residues in the environment has become a serious concern. Intensive animal farming is considered to be a major contributor to the increased environmental burden of antibiotics. Although some antibiotic investigations have been advancing around the world, as an important agricultural country, the information on these pollutants in animal farms are very limited in China. Previous studies have explored few antibiotic residues in livestock farms, whereas information on some antibiotics has remained unknown. The current study analyzed residues of 32 common veterinary antibiotics in manure and manure-based fertilizers collected from Jiangsu Province, China. In most of the manure and fertilizer samples, sulfamethazine and tetracycline were present, with high concentration up to 5650 and 1920 μg·kg^-1, respectively. These detected antibiotics have weak relationships with physicochemical properties. Ciprofloxacin, enrofloxacin, sulfamethazine, and sulfachlorpyridazine, hence pose a high potential risk to crops based on the toxicological data of organisms and plants in the soil environment. However, soil invertebrate, such as earthworms, Planococcus Citri. and Folsomia fimeraria., had low ecological risks. Our results showed the presence of antibiotics in livestock and poultry farms plus the potential risks to the soil ecosystem. Therefore, the findings can provide guidelines for monitoring antibiotic residues in agroecosystems, as well as insights into the associated ecological risks of using the two products.

Evolution of heavy metals during thermal treatment of manure: A critical review and outlooks

Manure treatment has become a focal issue in relation to current national policies on environmental and renewable energy matters. Heavy metals can be excreted with the animal manure, contributing to pollution of soil and water. Therefore, animal manure needs proper treatment before application to agricultural soils. Here, we review the species transformation of HMs and fate during incineration, pyrolysis, gasification and hydrothermal processing of animal manures. During thermal processes, 75%-90% of thermally stable HMs such as Cr, Ni, and Mn were concentrated in the solid-phase. HMs with less thermal stability such as Cd, As, Hg, and Pb are inclined to concentrate in the aqueous phase and gas phase, accounting for less than 5% of their total concentrations. In general, thermal processes transform HMs in the exchangeable fraction with high biotoxicity to oxidizable fraction or residual fraction with less bioavailability. In addition, the operating conditions and co-processing with other materials may influence the species transformation of HMs. Finally, recommendations for future research on the proper disposal and utilization of animal manure are proposed. More large-scale experiments are required to elucidate the precise mechanism behind the immobilization of HMs. The influence of additives (catalysts and HM stabilizers) and the influence of the type of solvent on HM transformation needs further study.

Reducing residual antibiotic levels in animal feces using intestinal Escherichia coli with surface-displayed erythromycin esterase

Antibiotics are widely used in livestock and poultry industries, which results in large quantities of antibiotic residues in manure that influences subsequent treatments. In this study, an Escherichia coli strain was engineered to display erythromycin esterase on its cell surface. The engineered strain (E. coli ereA) efficiently degraded erythromycin by opening the macrocyclic 14-membered lactone ring in solution. Erythromycin (50 mg/L) was completely degraded in a solution by E. coli ereA (1 × 10⁹ CFU/mL) within 24 h. E. coli ereA retained over 86.7 % of the initial enzyme activity after 40 days of storage at 25 °C, and 78.5 % of the initial activity after seven repeated batch reactions in solution at 25 °C. Mice were fed with E. coli ereA and real-time quantitative PCR data showed that E. coli ereA colonized in the mice large intestine. The mice group fed E. coli ereA exhibited 83.13 % decrease in erythromycin levels in their feces compared with the mice group not fed E. coli ereA. E. coli ereA eliminated antibiotics from the source preventing its release into the environment. The surface-engineered strain therefore is an effective alternative agent for treating recalcitrant antibiotics, and has the potential to be applied in livestock and poultry industries.

Effects of CO2 enrichment by fermentation of CRAM on growth, yield and physiological traits of cherry tomato

Carbon dioxide (CO2) concentration in greenhouses is sub-optimal for vegetable production. Many techniques have been used to increase CO2 concentration in greenhouses but most of them are expensive with certain limitations and drawbacks. We adopted a new strategy to elevate CO2 concentration in the greenhouse throughout the day via crop residues and animal manure composting (CRAM). During the whole cultivation period, CRAM-treated greenhouse had doubled CO2 concentration which significantly increased the yield of cherry tomatoes (Lycopersiconesculentum L.) i.e. up to 38%. The influence of CRAM procedure on cherry tomato quality was also investigated and the concentrations of total soluble solids (TSS) and soluble sugar were found to be significantly higher in cherry tomatoes grown under composting greenhouse than that of non-composting greenhouse. Additionally, CRAM-CO2 enrichment also resulted in increased concentrations of ascorbic acid (Vitamin C) and titrate acid as compared with the control. In contrast, the concentration of nitrate was considerably decreased in cherry tomato grown under CO2 enriched condition than that of control. The increase in active oxygen metabolisms such as POD, CAT and SOD while a decrease in MDA, as well as APX was observed for cherry tomatoes grown under CO2 enriched condition. Hence, CO2 fertilization by using CRAM in greenhouse significantly improved quality and increased the yield of cherry tomatoes.

Dynamics of metal(loid) resistance genes driven by succession of bacterial community during manure composting

Metal(loid) resistance genes (MRGs) play important roles in conferring resistance to metal(loid)s in bacterial communities. How MRGs respond to bacterial succession during manure composting remains largely unknown. Metagenomics was used in the present study to investigate the compositional changes of MRGs, their candidate hosts and association with integrons during thermophilic composting of chicken manures. MRGs conferring resistance to 20 metal(loid)s were detected, and their diversity and abundance (normalized to the abundance of 16S rRNA genes) were significantly reduced during composting. MRGs associated with integron were exclusively observed in proteobacterial species. Class 1 integron likely played an important role in maintaining mercury-resistance mer operon genes in composts. Escherichia coli harbored the most abundant MRGs in the original composting material, whereas species of Actinobacteria and Bacilli became more important in carrying MRGs during the late phases. There were significant linear relationships between the relative abundance of some specific bacterial species (E. coli, Actinobacteria species and Enterococcus faecium) and the abundance of MRGs they potentially harbored. The succession of these bacteria contributed to an overall linear regression between the relative abundance of all predicted candidate hosts and the abundance of total MRGs. Our results suggest that the succession of bacterial community was the main driver of MRG dynamics during thermophilic composting.

Soil attribute regulates assimilation of roxarsone metabolites by rice (Oryza sativa L.)

Roxarsone (ROX), an organoarsenic feed additive, and its metabolites, can be present in animal manure used to fertilize rice. Rice is prone to absorb arsenic, and is subject to straighthead disorder, which reduces rice yield and is linked with organic arsenic compounds. This study aims to elucidate how soil property affect arsenic accumulation in rice plants fertilized with chicken manure containing ROX metabolites. Manures of chickens fed without or with ROX, designated as control manure and ROX treated manure (ROXCM), respectively, were applied in eight paddy soils of different origins, to investigate the assimilation of arsenic species in rice plants. The results show that inorganic arsenic (arsenate and arsenite), monomethylarsonic acid and dimethylarsinic acid (DMA) were detected in all brown rice and husk, trace tetramethylarsonium and trimethylarsine oxide were occasionally found in these both parts, whereas all these arsenic species were determined in straw, irrespective of manure type. ROXCM application specifically and significantly increased brown rice DMA (P = 0.002), which remarkably enhanced the risk of straighthead disease in rice. Although soil total As impacted grain biomass, soil free-iron oxides and pH dominated arsenic accumulation by rice plants. The significantly increased grain DMA suggests manure bearing ROX metabolites is not suitable to be used in soils with abundant free-iron oxides and/or high pH, if straighthead disorder is to be avoided in rice.

Characterisation of ashes from waste biomass power plants and phosphorus recovery

Biowastes, such as meat and bone meal (MBM), and poultry litter (PL), are used as energy sources for industrial combustion in the UK. However, the biomass ashes remaining after combustion, which contain nutrients such as phosphorus, are landfilled rather than utilised. To promote their utilisation, biomass ashes from industries were characterised in terms of their elemental and mineral compositions, phosphorus extractability, and pH-dependent leachability. These ashes were highly alkaline (pH as high as 13), and rich in calcium and phosphorus. The P bio-availabilities in the ash evaluated by Olsen's extraction were low. Hydroxyapatite and potassium sodium calcium phosphate were identified by X-ray powder diffraction (XRD) as the major phases in the MBM and PL ashes, respectively. The leaching of P, Ca, and many other elements was pH dependent, with considerable increase in leaching below about pH 6. P recovery by acid dissolution (e.g., with H₂SO₄) seems feasible and promising; the optimized acid consumption for ~90% P recovery could be as low as 3.2-5.3 mol H⁺/mol P.

Techno-economic assessment of anaerobic co-digestion of livestock manure and cheese whey (Cow, Goat & Sheep) at small to medium dairy farms

Anaerobic digestion of manure is a common practice; however, the low biogas yield of manure can hamper the profitability of systems in small to medium farms. An increase in biogas yield could be achieved by co-digesting animal manure with co-substrates such as cheese whey. A Techno-economic assessment of anaerobic co-digestion of animal manure and cheese whey (cow, goat and sheep), has been carried out. The results obtained showed that for a farm with 250 adult cattle heads, the revenues generated in an anaerobic mono-digestion process are not able to offset the initial required investment. However, the co-digestion of manure with 30% of cheese whey showed a good economic performance and positive returns (Net Present values >0, Internal Rate of Return >11% and a Return of the investment in <10 years). Electricity selling price and biogas production are the key parameters to determine the profitability of the system.

Soil bacterial biodiversity is driven by long-term pasture management, poultry litter, and cattle manure inputs

Soil microorganisms are important for maintaining soil health, decomposing organic matter, and recycling nutrients in pasture systems. However, the impact of long-term conservation pasture management on soil microbial communities remains unclear. Therefore, soil microbiome responses to conservation pasture management is an important component of soil health, especially in the largest agricultural land-use in the US. The aim of this study was to identify soil microbiome community differences following 13-years of pasture management (hayed (no cattle), continuously grazed, rotationally grazed with a fenced, un-grazed and unfertilized buffer strip, and a control (no poultry litter or cattle manure inputs)). Since 2004, all pastures (excluding the control) received annual poultry litter at a rate of 5.6 Mg ha^-1. Soil samples were collected at a 0-15 cm depth from 2016-2017 either pre or post poultry litter applications, and bacterial communities were characterized using Illumina 16S rRNA gene amplicon sequencing. Overall, pasture management influenced soil microbial community structure, and effects were different by year (P < 0.05). Soils receiving no poultry litter or cattle manure had the lowest richness (Chao). Continuously grazed systems had greater (P < 0.05) soil community richness, which corresponded with greater soil pH and nutrients. Consequently, continuously grazed systems may increase soil diversity, owing to continuous nutrient-rich manure deposition; however, this management strategy may adversely affect aboveground plant communities and water quality. These results suggest conservation pasture management (e.g., rotationally grazed systems) may not improve microbial diversity, albeit, buffer strips were reduced nutrients and bacterial movement as evident by low diversity and fertility in these areas compared to areas with manure or poultry litter inputs. Overall, animal inputs (litter or manure) increased soil microbiome diversity and may be a mechanism for improved soil health.

Persistence of androgens, progestogens, and glucocorticoids during commercial animal manure composting process

Animal manure contains various organic contaminants such as steroids. The fate of these steroids during composting is still unknown. Here we investigated the fate of androgens, progestogens, and glucocorticoids during animal manure composting and evaluated their residues in compost-applied soils. The results showed the presence of 16 steroid hormones in the initial compost with concentrations ranging from 3.26 ng/g dw (Cortisol) to 2520 ng/g dw (5α-dihydroprogesterone). The concentrations of almost all detected hormones increased on the 2nd day of composting, and some of them increased several or even dozens of times. Steroids such as hydroxyprogesterone caproate, melengestrol acetate, and methyltestosterone were not found in the initial compost but later detected during the composting process. After 171 days of composting, only 40.4% of detected steroid hormones was removed, and the total concentration of detected steroids was still as high as 3210 ng/g dw. The removal rates of some target compounds were negative, especially for the natural androgens androsta-1,4-diene-3,17-dione and the synthetic androgen 17β-boldenone whose concentrations significantly increased by the end of composting, indicating conversion from their conjugates or transformation from other steroids. The steroid hormones were mainly eliminated in the first three weeks; prolonged composting time did not obviously promote further removal. The variations in steroid concentration were related to the changes in compost properties such as pH and temperature during the composting process. The dissipation of steroid hormones was also linked to the changes of microbial communities in the compost to some extent. Twelve steroids were detected in the compost-treated soils of a kailyard, while 26 steroid hormones were detected in the roots of Chinese cabbages grown on the soil. The results suggest that the application of manure compost product can lead to soil contamination and plant uptake.

Antibiotic resistance genes and bacterial communities in cornfield and pasture soils receiving swine and dairy manures

Land application of animal manure could change the profiles of antibiotic resistant bacteria (ARB), antibiotic resistance genes (ARGs) and bacterial communities in receiving soils. Using high-throughput real-time quantitative PCR and 16S rRNA amplicon sequencing techniques, this study investigated the ARGs and bacterial communities in field soils under various crop (corn and pasture) and manure (swine and dairy) managements, which were compared with those of two non-manured reference soils from adjacent golf course and grassland. In total 89 unique ARG subtypes were found in the soil samples and they conferred resistance via efflux pump, cellular protection and antibiotic deactivation. Compared to the ARGs in the golf course and grassland soils (28 and 34 subtypes respectively), manured soils generally had greater ARG diversity (36-55 subtypes). Cornfield soil frequently receiving raw swine manure had the greatest ARG abundance. The short-term (one week) application of composted and liquid swine manures increased the diversity and total abundance of ARGs in cornfield soils. Intriguingly the composted swine manure only marginally increased the total abundance of ARGs, but substantially increased the number of ARG subtypes in the cornfield soils. The network analysis revealed three major network modules in the co-occurrence patterns of ARG subtypes, and the hubs of these major modules (intl1-1, vanC, and pncA) may be candidates for selecting indicator genes for surveillance of ARGs in manured soils. The network analyses between ARGs and bacteria taxa revealed the potential host bacteria for the detected ARGs (e.g., aminoglycoside resistance gene aacC4 may be mainly carried by Acidobacteriaceae). Overall, this study highlighted the potentially varying impact of various manure management on antibiotic resistome and microbiome in cornfield and pasture soils.

Effect of roxarsone metabolites in chicken manure on soil biological property

Roxarsone (ROX), an organoarsenic feed additive, occurs as itself and its metabolites including As(V), As(III), monomethylarsonic acid (MMA) and dimethylarsinic acid (DMA) in animal manure. Animal manure improves soil biological property, whereas As compounds impact microorganisms. The integral influence of animal manure bearing ROX metabolites on soil biological quality is not clear yet. Herein, the effect of four chicken manures excreted by chickens fed with four diets containing 0, 40, 80 and 120 mg ROX kg^-1, on soil biological attributes. ROX addition in chicken diets increased total As and ROX metabolites in manures, but decreased manure total N, ammonium and nitrate. The elevated ROX metabolites in manures increased soil total As, As species and total N, and increased first and then decreased soil nitrate and nitrite, but did not affect soil ammonium in manure-applied soils. The promoting role of both soil As(III) and ammonium on soil microbial biomass carbon and nitrogen, respiration and saccharase activity, were exceeded or balanced by the inhibiting effect of soil nitrate. The suppression of soil catalase activity by soil As(V) was surpassed by the enhancement caused by soil nitrate and nitrite. Soil urease, acid phosphatase and polyphenol oxidase activities were not suitable bioindicators in the four manure-amended soils. Soil DMA did not affect soil biological properties, and MMA was not detectable in all manure-amended soils. The above highlights the complexity of joint influence of soil As and N on biological attributes. Totally, when ROX is used at allowable dose in chicken diet, soil biological quality would be suppressed in manure-amended soil.

Does animal manure application improve soil aggregation? Insights from nine long-term fertilization experiments

Manure application is widely recognized as a method of improving soil structure and soil fertility due to additional organic matter and nutrient inputs. However, the salinity of animal manure may have a detrimental effect on soil aggregation. The objective of this study was to determine the effects of long-term animal manure application on soil aggregation, binding agents (soil organic carbon, SOC and glomalin-related soil protein, GRSP), and dispersing agents (e.g., Na⁺) and their relationships based on nine long-term fertilization experiments (12 to 39 yr) across China. The two red soil experiments (Qiyang, QY and Jinxian, JX) and one paddy soil experiment in Jinxian (JX-P) were conducted in southern China (precipitation above 1200 mm yr^-1), whereas the other six experiments were established in semi-humid or arid regions in China with precipitation in the range of 500-900 mm yr^-1. Each experiment included three treatments as follows: no fertilization (Control), inorganic fertilizer (NP or NPK), and a combination of inorganic fertilizer and animal manure (NPM or NPKM). Long-term animal manure application not only significantly increased the biological binding agents (i.e., SOC and GRSP) in the nine experiments but also considerably increased the dispersing agents (i.e., exchangeable Na⁺) (P < 0.05), except for the paddy soil experiment. Consequently, soil aggregate stability increased after animal manure application in three experimental sites in southern China but not in the experimental sites in northern China. Aggregate stability had a positive relationship with SOC and GRSP in the experimental sites in southern China (P < 0.01) but a negative relationship with exchangeable Na⁺ in the experimental sites in northern China (P < 0.05). The Na⁺ accumulation in soils was negatively related to mean annual precipitation (P < 0.001). Our study demonstrates that the long-term application of animal manure may degrade soil structure via the Na⁺ accumulation.

Compost-bulking agents reduce the reservoir of antibiotics and antibiotic resistance genes in manures by modifying bacterial microbiota

Sawdust, rice husk, and mushroom residues are commonly used as bulking agents during manure composting; this work evaluated their potentiality for enhancing the removal of antibiotics and antibiotic resistance genes (ARGs) under a temperature-consistent condition. Results indicated that the addition of all the compost-bulking agents increased antibiotic removal in swine manure with increasing rates of 14.9%-33.4%; however they showed less effect on the reduction of residual antibiotics in chicken manure where fluoroquinolone (FQs) antibiotics are the dominant antibiotics, partly owing to the weak promoting effects of bulking agents on FQs degradation. The addition of bulking agents somehow hindered the reduction of ARGs within swine manure, whereas there were obvious reductions in the total relative abundance of ARGs in chicken manure with bulking agents added. Among the three bulking agents, sawdust was the most efficient enhancer for antibiotic removal in both manures, and rice husk exhibited the best performance on ARGs reduction in chicken manure. The relationship between antibiotics, ARGs and bacteria communities was subsequently delineated. Proteobacteria was proposed to play key roles on the effect of bulking agent addition on antibiotics and ARGs in swine manure. Particularly, the increased Xanthomonadaceae contributed much to the promoted antibiotic degradation as well as the high level of ARGs in swine manure with sawdust added. By contrast, the changes in dominant bacterial families by the addition of bulking agents into chicken manure were not strong enough to effectively enhance antibiotic removal, but largely influenced the ARGs abundance. The large reductions of Paenibacillaceae and Staphylococcaceae by rice husk addition were closely related to the reduced ARGs in chicken manure with rice husk added.

Degradation of tetracyclines in manure-amended soil and their uptake by litchi (Litchi chinensis Sonn.)

The environmental and human health risk posed by veterinary antibiotics is of global concern. Antibiotic uptake by herbal plants has been studied, but little is known about perennial woody fruit crops. Litchi (Litchi chinensis Sonn.), a longevial fruit tree, is routinely fertilized with animal manure and, therefore, may be at risk of antibiotic uptake into its fruits. This study investigated the degradation of chlortetracycline and doxycycline present in manure used to amend orchard soil, and their subsequent assimilation by litchi plant, as affected by manure application rate. The results show that half-lives of chlortetracycline and doxycycline in soil were decreased by increased manure rate, with an average of 27 and 59 days, respectively. Chlortetracycline was readily transported to litchi shoots and increased with the growth of litchi plants. Doxycycline predominantly remained in the roots, and underwent growth dilution in the plants. The two tetracyclines could not be detected in fruits from litchi trees when applied with manures, at various rates, over 2 years. For litchi, chlortetracycline may pose human health risk through manure application, but doxycycline is unlikely to do so. Long-term field experiments are required to monitor antibiotic accumulation in fruits of perennial fruit trees fertilized with animal manure.

Occurrence of β-lactam and polyether ionophore antibiotics in lagoon water and animal manure

The occurrence of micropollutants in agricultural wastes is an emerging area of interest due to the potential impact of these compounds on the environment. A sensitive and reliable analytical method using liquid chromatography-electrospray tandem mass spectrometry has been developed and validated for the determination of three β-lactam and three polyether ionophore antibiotics in lagoon water and animal manure matrices. The method was applied to evaluate the occurrence of these compounds from participating farms in northern Colorado. Seven of the 19 lagoon water samples and two of the six animal manures showed detectable. The three targeted β-lactams (cephapirin, penicillin G, cloxacillin) were found at 0.97-43.31 μg/L in the lagoon water samples. Of the three targeted polyether ionophores, only monensin (94 to 1077 μg/L) was detected in the beef runoff pond water samples. Only cloxacillin was measured in the dairy animal manure samples at levels from 8.09 to 45.20 μg/kg. No cephapirin, penicillin G, cloxacillin, salinomycin, or narasin A were detected in any solid animal manure sample. These results indicate that elevated concentrations of β-lactam and ionophore compounds might be found in lagoon or runoff pond waters and solid animal manures compared to surface waters, which these compounds are used in veterinary applications.

CO2-assisted phosphorus extraction from poultry litter and selective recovery of struvite and potassium struvite

Phosphorus recovery from industrialized poultry operations is necessary to ensure sustainable waste management and resource consumption. To realize these goals, an innovative, two-stage process chemistry has been developed to extract nutrients from poultry litter and recover value-added products. Over 75% phosphorus extraction was achieved by bubbling carbon dioxide into poultry litter slurries and adding strong acid to reach pH 4.5-5.5. After separating the nutrient-deficient poultry litter solids and the nutrient-rich liquid, the extract pH was increased through aeration and strong base addition. Over 95% of the extracted phosphorus was recovered as solid precipitate at pH 8.5-9.0. High-purity struvite and potassium struvite products were selectively recovered through pH control, introduction of a calcium-complexing agent, and addition of magnesium chloride. The nitrogen-to-phosphorus-to-potassium (NPK) ratio of the recovered solids was controlled through aeration and pH adjustment. Precipitation at pH 8.5-9.0 and 10.5-11.0 resulted in NPK ratios of 2.0:1.0:0.1 and 0.9:1.0:0.2, respectively. The process effluent was effectively recycled as makeup water for the subsequent batch of poultry litter, thereby decreasing water consumption and increasing overall nutrient recovery. Sequencing batch operation yielded greater than 70% phosphorus recovery within a 45-min process, demonstrating the potential for this technology to alleviate nutrient pollution in agricultural settings and generate an alternative supply of phosphorus fertilizers.