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Zhou Y, He Y, Zhou Z, Xiao X, Wang M, Chen B. A newly isolated microalga Chlamydomonas sp. YC to efficiently remove ammonium nitrogen of rare earth elements wastewater. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 316:115284. [PMID: 35584596 DOI: 10.1016/j.jenvman.2022.115284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2022] [Revised: 04/26/2022] [Accepted: 05/08/2022] [Indexed: 06/15/2023]
Abstract
The aim of this study was to establish a practical approach to remove ammonium nitrogen of rare earth elements (REEs) wastewater by an indigenous photoautotrophic microalga. Firstly, a new microalgal strain was successfully isolated from REEs wastewater and identified as Chlamydomonas sp. (named Chlamydomonas sp. YC). The obtained results showed that microalga could completely remove the NH4+-N of 10% REEs wastewater after 10 days of cultivation; however, the highest NH4+-N removal rate was attained by microalga to treat undiluted REEs wastewater. Then, three cultivation modes including batch, semi-continuous and continuous cultivation methods were developed to evaluate the ability of NH4+-N removal rate by this microalga to treat diluted (10%) and undiluted REEs wastewater. It was found that, Chlamydomonas sp. YC exhibited superior performance towards NH4+-N removal rates (32.75-61.05 mg/(L·d)) by semi-continuous and continuous processes for the treatments of 10% and undiluted REEs wastewater in comparison to the results (19.50-30.38 mg/(L·d) by batch process. Interestingly, under the same treatment conditions, among the three cultivation modes, microalga exhibited the highest removal rates of NH4+-N in undiluted REEs wastewater by semi-continuous (61.05 mg/(L·d)) and continuous (57.10 mg/(L·d) processes. In term of the biochemical analysis, microalgal biomass obtained from the wastewater treatment had 35.40-44.40% carbohydrate and 4.97-6.03% lipid, which could be potential ingredients for sustainable biofuels production. And the highest carbohydrate and lipid productivities attained by Chlamydomonas sp. YC in the continuous mode were 226.36 mg/(L·d) and 32.98 mg/(L·d), respectively. Taken together, the established processes mediated with Chlamydomonas sp. YC via continuous cultivation was the great promising approaches to efficiently remove NH4+-N of REEs wastewater and produce valuable biomass for sustainable and renewable biofuels in a simultaneous manner.
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Hui C, Schmollinger S, Strenkert D, Holbrook K, Montgomery HR, Chen S, Nelson HM, Weber PK, Merchant SS. Simple steps to enable reproducibility: culture conditions affecting Chlamydomonas growth and elemental composition. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 111:995-1014. [PMID: 35699388 DOI: 10.1111/tpj.15867] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Revised: 06/01/2022] [Accepted: 06/03/2022] [Indexed: 05/26/2023]
Abstract
Even subtle modifications in growth conditions elicit acclimation responses affecting the molecular and elemental makeup of organisms, both in the laboratory and in natural habitats. We systematically explored the effect of temperature, pH, nutrient availability, culture density, and access to CO2 and O2 in laboratory-grown algal cultures on growth rate, the ionome, and the ability to accumulate Fe. We found algal cells accumulate Fe in alkaline conditions, even more so when excess Fe is present, coinciding with a reduced growth rate. Using a combination of Fe-specific dyes, X-ray fluorescence microscopy, and NanoSIMS, we show that the alkaline-accumulated Fe was intracellularly sequestered into acidocalcisomes, which are localized towards the periphery of the cells. At high photon flux densities, Zn and Ca specifically over-accumulate, while Zn alone accumulates at low temperatures. The impact of aeration was probed by reducing shaking speeds and changing vessel fill levels; the former increased the Cu quota of cultures, the latter resulted in a reduction in P, Ca, and Mn at low fill levels. Trace element quotas were also affected in the stationary phase, where specifically Fe, Cu, and Zn accumulate. Cu accumulation here depends inversely on the Fe concentration of the medium. Individual laboratory strains accumulate Ca, P, and Cu to different levels. All together, we identified a set of specific changes to growth rate, elemental composition, and the capacity to store Fe in response to subtle differences in culturing conditions of Chlamydomonas, affecting experimental reproducibility. Accordingly, we recommend that these variables be recorded and reported as associated metadata.
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Choi BY, Shim D, Kong F, Auroy P, Lee Y, Li-Beisson Y, Lee Y, Yamaoka Y. The Chlamydomonas transcription factor MYB1 mediates lipid accumulation under nitrogen depletion. THE NEW PHYTOLOGIST 2022; 235:595-610. [PMID: 35383411 DOI: 10.1111/nph.18141] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Accepted: 03/29/2022] [Indexed: 06/14/2023]
Abstract
Microalgae accumulate high levels of oil under stress, but the underlying biosynthetic pathways are not fully understood. We sought to identify key regulators of lipid metabolism under stress conditions. We found that the Chlamydomonas reinhardtii gene encoding the MYB-type transcription factor MYB1 is highly induced under stress conditions. Two myb1 mutants accumulated less total fatty acids and storage lipids than their parental strain upon nitrogen (N) depletion. Transcriptome analysis revealed that genes involved in lipid metabolism are highly enriched in the wild-type but not in the myb1-1 mutant after 4 h of N depletion. Among these genes were several involved in the transport of fatty acids from the chloroplast to the endoplasmic reticulum (ER): acyl-ACP thioesterase (FAT1), Fatty Acid EXporters (FAX1, FAX2), and long-chain acyl-CoA synthetase1 (LACS1). Furthermore, overexpression of FAT1 in the chloroplast increased lipid production. These results suggest that, upon N depletion, MYB1 promotes lipid accumulation by facilitating fatty acid transport from the chloroplast to the ER. This study identifies MYB1 as an important positive regulator of lipid accumulation in C. reinhardtii upon N depletion, adding another player to the established regulators of this process, including NITROGEN RESPONSE REGULATOR 1 (NRR1) and TRIACYLGLYCEROL ACCUMULATION REGULATOR 1 (TAR1).
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Tazi K, Jamai L, Seddouk L, Ettayebi M, Mohammed AM, Aleya L, Idrissi AJ. Improving carbohydrate accumulation in Chlamydomonas debaryana induced by sulfur starvation using response surface methodology. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:23949-23962. [PMID: 34817813 DOI: 10.1007/s11356-021-17583-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Accepted: 11/13/2021] [Indexed: 06/13/2023]
Abstract
Most methods that promote carbohydrate production negatively affect cell growth and microalgal biomass production. This study explores, in a two-stage cultivation strategy, in Chlamydomonas debaryana the optimization of certain culture conditions for high carbohydrate production without loss of biomass. In the first stage, the interaction between sodium bicarbonate supplementation, aeration, and different growth periods was optimized using the response surface methodology (RMS). The 3-factor Box-Behnken design (BBD) was applied, and a second-order polynomial regression analysis was used to analyze the experimental data. The results showed that 0.45 g L-1 of sodium bicarbonate combined with a good aerated agitation (0.6 L min-1) and a cultivation period of 18 days are optimal to produce 5.02 g L-1 of biomass containing 43% of carbohydrates.Under these optimized growth conditions, accumulation of carbohydrates was studied using different modes of nutritional stress. The results indicated that carbohydrate content was improved and the maximum accumulation (about 60% of the dry weight) was recorded under sulfur starvation with only a 14% reduction in biomass as compared to control. This study showed promising results as to biomass production and carbohydrate yield by the microalgae C. debaryana in view of production of third-generation biofuels.
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Seoane R, Santaeufemia S, Abalde J, Torres E. Efficient Removal of Methylene Blue Using Living Biomass of the Microalga Chlamydomonas moewusii: Kinetics and Equilibrium Studies. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:ijerph19052653. [PMID: 35270343 PMCID: PMC8909845 DOI: 10.3390/ijerph19052653] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Revised: 02/22/2022] [Accepted: 02/23/2022] [Indexed: 12/24/2022]
Abstract
The efficiency of the living biomass of the microalga Chlamydomonas moewusii in removing methylene blue dye is determined. The kinetics, equilibrium isotherms, and the effects on this process of the pH, contact time, and initial concentration of the dye are studied. Fourier transform infrared spectrometry and point of zero charge are used to characterize the biomass and explore the process. The maximum removal capacity derived from the Langmuir isotherm is 212.41 ± 4.55 mg/g after 7 h of contact time at pH 7. The removal process is rapid because kinetic studies revealed that the best fit of the data is with pseudo-third-order kinetics. The removal efficiency is dependent on the pH; as the pH increased, the efficiency is higher. These results show that the living biomass of this microalga is a very efficient biosorbent and therefore very suitable for the removal of methylene blue from aqueous solutions.
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Bai F, Yu L, Shi J, Li-Beisson Y, Liu J. Long-chain acyl-CoA synthetases activate fatty acids for lipid synthesis, remodeling and energy production in Chlamydomonas. THE NEW PHYTOLOGIST 2022; 233:823-837. [PMID: 34665469 DOI: 10.1111/nph.17813] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Accepted: 10/13/2021] [Indexed: 06/13/2023]
Abstract
Long-chain acyl-CoA synthetases (LACSs) play many roles in mammals, yeasts and plants, but knowledge on their functions in microalgae remains fragmented. Here via genetic, biochemical and physiological analyses, we unraveled the function and roles of LACSs in the model microalga Chlamydomonas reinhardtii. In vitro assays on purified recombinant proteins revealed that CrLACS1, CrLACS2 and CrLACS3 all exhibited bona fide LACS activities toward a broad range of free fatty acids. The Chlamydomonas mutants compromised in CrLACS1, CrLACS2 or CrLACS3 did not show any obvious phenotypes in lipid content or growth under nitrogen (N)-replete condition. But under N-deprivation, CrLACS1 or CrLACS2 suppression resulted in c. 50% less oil, yet with a higher amount of chloroplast lipids. By contrast, CrLACS3 suppression impaired oil remobilization and cell growth severely during N-recovery, supporting its role in fatty acid β-oxidation to provide energy and carbon sources for regrowth. Transcriptomics analysis suggested that the observed lipid phenotypes are likely not due to transcriptional reprogramming but rather a shift in metabolic adjustment. Taken together, this study provided solid experimental evidence for essential roles of the three Chlamydomonas LACS enzymes in lipid synthesis, remodeling and catabolism, and highlighted the importance of lipid homeostasis in cell growth under nutrient fluctuations.
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Crespo JL, Pérez-Pérez ME. Monitoring of ATG4 Protease Activity During Autophagy in the Model Microalga Chlamydomonas reinhardtii. Methods Mol Biol 2022; 2447:205-220. [PMID: 35583784 DOI: 10.1007/978-1-0716-2079-3_17] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Deciphering the molecular mechanisms underlying the regulation of the ATG4 protease is essential to understand the regulation of ATG8 lipidation, a key step in the biogenesis of the autophagosome and hence in autophagy progression. Here, we describe two complementary approaches to monitor ATG4 proteolytic activity in the model green alga Chlamydomonas reinhardtii: an in vitro assay using recombinant ATG4 and recombinant ATG8 as substrate, and a cell-free assay using soluble total protein extract from Chlamydomonas and recombinant Chlamydomonas ATG8 as substrate. Both assays are followed by non-reducing SDS-PAGE and immuno-blot analysis. Given the high evolutionary conservation of the ATG8 maturation process, these assays have also been validated to monitor ATG4 activity in yeast using Chlamydomonas ATG8 as substrate.
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Couso I, Smythers AL, Ford MM, Umen JG, Crespo JL, Hicks LM. Inositol polyphosphates and target of rapamycin kinase signalling govern photosystem II protein phosphorylation and photosynthetic function under light stress in Chlamydomonas. THE NEW PHYTOLOGIST 2021; 232:2011-2025. [PMID: 34529857 DOI: 10.1111/nph.17741] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2021] [Accepted: 09/09/2021] [Indexed: 05/28/2023]
Abstract
Stress and nutrient availability influence cell proliferation through complex intracellular signalling networks. In a previous study it was found that pyro-inositol polyphosphates (InsP7 and InsP8 ) produced by VIP1 kinase, and target of rapamycin (TOR) kinase signalling interacted synergistically to control cell growth and lipid metabolism in the green alga Chlamydomonas reinhardtii. However, the relationship between InsPs and TOR was not completely elucidated. We used an in vivo assay for TOR activity together with global proteomic and phosphoproteomic analyses to assess differences between wild-type and vip1-1 in the presence and absence of rapamycin. We found that TOR signalling is more severely affected by the inhibitor rapamycin in a vip1-1 mutant compared with wild-type, indicating that InsP7 and InsP8 produced by VIP1 act independently but also coordinately with TOR. Additionally, among hundreds of differentially phosphorylated peptides detected, an enrichment for photosynthesis-related proteins was observed, particularly photosystem II proteins. The significance of these results was underscored by the finding that vip1-1 strains show multiple defects in photosynthetic physiology that were exacerbated under high light conditions. These results suggest a novel role for inositol pyrophosphates and TOR signalling in coordinating photosystem phosphorylation patterns in Chlamydomonas cells in response to light stress and possibly other stresses.
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Ayele A, Suresh A, Benor S, Konwarh R. Optimization of chromium(VI) removal by indigenous microalga ( Chlamydomonas sp.)-based biosorbent using response surface methodology. WATER ENVIRONMENT RESEARCH : A RESEARCH PUBLICATION OF THE WATER ENVIRONMENT FEDERATION 2021; 93:1276-1288. [PMID: 33428305 DOI: 10.1002/wer.1510] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2020] [Revised: 12/24/2020] [Accepted: 01/04/2021] [Indexed: 05/13/2023]
Abstract
Phycoremediation of heavy metals has garnered considerable recent research interest. In this study, an indigenous microalga (Chlamydomonas sp.)-based biosorbent was employed for biosorption of Cr(VI) dissolved solids (Cr(VI)-DS), optimized using response surface methodology (RSM). The effects of microalga concentration, pH, and contact time were studied with 250 mg Cr(VI)-DS L-1 . The biosorption of Cr(VI)-DS was higher at acidic pH (94.17% at pH 4) than at alkaline conditions (68.53% at pH 10). The interaction of pH and microalga concentration exerted significant (p < 0.05) influence on the biosorption. Under the optimized parameters of 1.5 g microalga L-1 , pH 4, and contact time of 30 min, a predicted biosorption of 91.31% and biosorption capacity of 152 mg Cr(VI)-DS g-1 biomass were documented. FTIR analysis attested the electronegative surface functional groups of the microalgae biomass, bracketed together with its high biosorption potency. The study evinced the potential of the indigenous microalga for remediation of hexavalent chromium. PRACTITIONER POINTS: Indigenous Ethiopian microalga (Chlamydomonas sp.) exhibited 94% Cr(VI) abatement with biosorption capacity of 152 mg Cr(VI) g-1 . FTIR analysis of the biosorbent divulged the presence of electronegative functional groups (amino, carboxyl, hydroxyl, and carbonyl groups). Higher biosorption of Cr(VI)-DS under acidic pH (94.17% at pH 4) than alkaline pH (68.53% at pH 10). Significant (p < 0.05) interaction effect of pH and biomass concentration on the biosorption, evinced in RSM optimization 91% Cr(VI) removal achieved under optimal conditions of 1.5 g biosorbent L-1 , 30 min of contact time, and pH 4.
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Li-Beisson Y, Kong F, Wang P, Lee Y, Kang BH. The disassembly of lipid droplets in Chlamydomonas. THE NEW PHYTOLOGIST 2021; 231:1359-1364. [PMID: 34028037 DOI: 10.1111/nph.17505] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2021] [Accepted: 05/07/2021] [Indexed: 06/12/2023]
Abstract
Lipid droplets (LDs) are ubiquitous and specialized organelles in eukaryotic cells. Consisting of a triacylglycerol core surrounded by a monolayer of membrane lipids, LDs are decorated with proteins and have myriad functions, from carbon/energy storage to membrane lipid remodeling and signal transduction. The biogenesis and turnover of LDs are therefore tightly coordinated with cellular metabolic needs in a fluctuating environment. Lipid droplet turnover requires remodeling of the protein coat, lipolysis, autophagy and fatty acid β-oxidation. Several key components of these processes have been identified in Chlamydomonas (Chlamydomonas reinhardtii), including the major lipid droplet protein, a CXC-domain containing regulatory protein, the phosphatidylethanolamine-binding DTH1 (DELAYED IN TAG HYDROLYSIS1), two lipases and two enzymes involved in fatty acid β-oxidation. Here, we review LD turnover and discuss its physiological significance in Chlamydomonas, a major model green microalga in research on algal oil.
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Chen G, Zhu N, Hu Z, Liu L, Wang GQ, Wang G. Motility changes rather than EPS production shape aggregation of Chlamydomonas microsphaera in aquatic environment. ENVIRONMENTAL TECHNOLOGY 2021; 42:2916-2924. [PMID: 31951776 DOI: 10.1080/09593330.2020.1718216] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Accepted: 01/11/2020] [Indexed: 06/10/2023]
Abstract
Microalgal aggregation is a key for both microalgae harvesting and water purification, where changes in extracellular polymeric substance (EPS) secretion and cell motility changes are of core importance. In this study, we investigated the aggregation process of Chlamydomonas microsphaera confronting resource limitation and chlorine disinfection, and tried to compare changes in the magnitude of EPS secretion and cell motility. Results show that the presence of mild chlorine solution (0.20%) dose stimulated microalgal aggregation (with an aggregated to planktonic cells ratio of 3.2), with extracellular protein concentration and mean cell velocity reaching a maximum of 43.43 ± 0.01 mg/L and 201 ± 35 µm/s, respectively. These values are 71% and 191% higher than those of the control. Comparably, nutrient availability had only a limited impact on microalgal aggregation and was associated with mild EPS secretion and cell motility. Correlation analysis revealed a strong positive impact of cell motility (mean velocity) on microalgae aggregation, with little effect on EPS excretion. Together, these quantitative estimations may shed light on understanding the mechanisms of microalgae aggregation in aqueous systems, which could help future design and practical operation of source water pretreatment or microalgae harvesting.
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Santhanagopalan I, Wong R, Mathur T, Griffiths H. Orchestral manoeuvres in the light: crosstalk needed for regulation of the Chlamydomonas carbon concentration mechanism. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:4604-4624. [PMID: 33893473 PMCID: PMC8320531 DOI: 10.1093/jxb/erab169] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2021] [Accepted: 04/19/2021] [Indexed: 05/19/2023]
Abstract
The inducible carbon concentration mechanism (CCM) in Chlamydomonas reinhardtii has been well defined from a molecular and ultrastructural perspective. Inorganic carbon transport proteins, and strategically located carbonic anhydrases deliver CO2 within the chloroplast pyrenoid matrix where Rubisco is packaged. However, there is little understanding of the fundamental signalling and sensing processes leading to CCM induction. While external CO2 limitation has been believed to be the primary cue, the coupling between energetic supply and inorganic carbon demand through regulatory feedback from light harvesting and photorespiration signals could provide the original CCM trigger. Key questions regarding the integration of these processes are addressed in this review. We consider how the chloroplast functions as a crucible for photosynthesis, importing and integrating nuclear-encoded components from the cytoplasm, and sending retrograde signals to the nucleus to regulate CCM induction. We hypothesize that induction of the CCM is associated with retrograde signals associated with photorespiration and/or light stress. We have also examined the significance of common evolutionary pressures for origins of two co-regulated processes, namely the CCM and photorespiration, in addition to identifying genes of interest involved in transcription, protein folding, and regulatory processes which are needed to fully understand the processes leading to CCM induction.
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Hou Y, Zhao L, Kubo T, Cheng X, McNeill N, Oda T, Witman GB. Chlamydomonas FAP70 is a component of the previously uncharacterized ciliary central apparatus projection C2a. J Cell Sci 2021; 134:jcs258540. [PMID: 33988244 PMCID: PMC8272932 DOI: 10.1242/jcs.258540] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Accepted: 04/23/2021] [Indexed: 12/12/2022] Open
Abstract
Cilia are essential organelles required for cell signaling and motility. Nearly all motile cilia have a '9+2' axoneme composed of nine outer doublet microtubules plus two central microtubules; the central microtubules together with their projections are termed the central apparatus (CA). In Chlamydomonas reinhardtii, a model organism for studying cilia, 30 proteins are known CA components, and ∼36 more are predicted to be CA proteins. Among the candidate CA proteins is the highly conserved FAP70 (CFAP70 in humans), which also has been reported to be associated with the doublet microtubules. Here, we determined by super-resolution structured illumination microscopy that FAP70 is located exclusively in the CA, and show by cryo-electron microscopy that its N-terminus is located at the base of the C2a projection of the CA. We also found that fap70-1 mutant axonemes lack most of the C2a projection. Mass spectrometry revealed that fap70-1 axonemes lack not only FAP70 but two other conserved candidate CA proteins, FAP65 (CFAP65 in humans) and FAP147 (MYCBPAP in humans). Finally, FAP65 and FAP147 co-immunoprecipitated with HA-tagged FAP70. Taken together, these data identify FAP70, FAP65 and FAP147 as the first defining components of the C2a projection.
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Nobori T. Single-cell genomics goes greener. THE PLANT CELL 2021; 33:792-793. [PMID: 35234972 PMCID: PMC8226280 DOI: 10.1093/plcell/koab036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Accepted: 01/22/2021] [Indexed: 06/14/2023]
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Théry A, Wang Y, Dvoriashyna M, Eloy C, Elias F, Lauga E. Rebound and scattering of motile Chlamydomonas algae in confined chambers. SOFT MATTER 2021; 17:4857-4873. [PMID: 33890590 PMCID: PMC8115209 DOI: 10.1039/d0sm02207a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Motivated by recent experiments demonstrating that motile algae get trapped in draining foams, we study the trajectories of microorganisms confined in model foam channels (section of a Plateau border). We track single Chlamydomonas reinhardtii cells confined in a thin three-circle microfluidic chamber and show that their spatial distribution exhibits strong corner accumulation. Using empirical scattering laws observed in previous experiments (scattering with a constant scattering angle), we next develop a two-dimension geometrical model and compute the phase space of trapped and periodic trajectories of swimmers inside a three-circles billiard. We find that the majority of cell trajectories end up in a corner, providing a geometrical mechanism for corner accumulation. Incorporating the distribution of scattering angles observed in our experiments and including hydrodynamic interactions between the cells and the surfaces into the geometrical model enables us to reproduce the experimental probability density function of micro-swimmers in microfluidic chambers. Both our experiments and models demonstrate therefore that motility leads generically to trapping in complex geometries.
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Goli Pozveh S, Bae AJ, Gholami A. Resistive force theory and wave dynamics in swimming flagellar apparatus isolated from C. reinhardtii. SOFT MATTER 2021; 17:1601-1613. [PMID: 33355581 PMCID: PMC8323821 DOI: 10.1039/d0sm01969k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/05/2020] [Accepted: 12/08/2020] [Indexed: 06/12/2023]
Abstract
Cilia-driven motility and fluid transport are ubiquitous in nature and essential for many biological processes, including swimming of eukaryotic unicellular organisms, mucus transport in airway apparatus or fluid flow in the brain. The-biflagellated micro-swimmer Chlamydomonas reinhardtii is a model organism to study the dynamics of flagellar synchronization. Hydrodynamic interactions, intracellular mechanical coupling or cell body rocking is believed to play a crucial role in the synchronization of flagellar beating in green algae. Here, we use freely swimming intact flagellar apparatus isolated from a wall-less strain of Chlamydomonas to investigate wave dynamics. Our analysis on phase coordinates shows that when the frequency difference between the flagella is high (10-41% of the mean), neither mechanical coupling via basal body nor hydrodynamics interactions are strong enough to synchronize two flagella, indicating that the beating frequency is perhaps controlled internally by the cell. We also examined the validity of resistive force theory for a flagellar apparatus swimming freely in the vicinity of a substrate and found quantitative agreement between the experimental data and simulations with a drag anisotropy of ratio 2. Finally, using a simplified wave form, we investigated the influence of phase and frequency differences, intrinsic curvature and wave amplitude on the swimming trajectory of flagellar apparatus. Our analysis shows that by controlling the phase or frequency differences between two flagella, steering can occur.
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Carrasco Flores D, Fricke M, Wesp V, Desirò D, Kniewasser A, Hölzer M, Marz M, Mittag M. A marine Chlamydomonas sp. emerging as an algal model. JOURNAL OF PHYCOLOGY 2021; 57:54-69. [PMID: 33043442 DOI: 10.1111/jpy.13083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Revised: 08/25/2020] [Accepted: 08/26/2020] [Indexed: 06/11/2023]
Abstract
The freshwater microalga Chlamydomonas reinhardtii, which lives in wet soil, has served for decades as a model for numerous biological processes, and many tools have been introduced for this organism. Here, we have established a stable nuclear transformation for its marine counterpart, Chlamydomonas sp. SAG25.89, by fusing specific cis-acting elements from its Actin gene with the gene providing hygromycin resistance and using an elaborated electroporation protocol. Like C. reinhardtii, Chlamydomonas sp. has a high GC content, allowing reporter genes and selection markers to be applicable in both organisms. Chlamydomonas sp. grows purely photoautotrophically and requires ammonia as a nitrogen source because its nuclear genome lacks some of the genes required for nitrogen metabolism. Interestingly, it can grow well under both low and very high salinities (up to 50 g · L-1 ) rendering it as a model for osmotolerance. We further show that Chlamydomonas sp. grows well from 15 to 28°C, but halts its growth at 32°C. The genome of Chlamydomonas sp. contains some gene homologs the expression of which is regulated according to the ambient temperatures and/or confer thermal acclimation in C. reinhardtii. Thus, knowledge of temperature acclimation can now be compared to the marine species. Furthermore, Chlamydomonas sp. can serve as a model for studying marine microbial interactions and for comparing mechanisms in freshwater and marine environments. Chlamydomonas sp. was previously shown to be immobilized rapidly by a cyclic lipopeptide secreted from the antagonistic bacterium Pseudomonas protegens PF-5, which deflagellates C. reinhardtii.
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Xie P, Ho SH, Xiao QY, Xu XJ, Zhao L, Zhou X, Lee DJ, Ren NQ, Chen C. Revealing the role of nitrate on sulfide removal coupled with bioenergy production in Chlamydomonas sp. Tai-03: Metabolic pathways and mechanisms. JOURNAL OF HAZARDOUS MATERIALS 2020; 399:123115. [PMID: 32937723 DOI: 10.1016/j.jhazmat.2020.123115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Revised: 05/23/2020] [Accepted: 06/02/2020] [Indexed: 06/11/2023]
Abstract
Recently, simultaneous sulfide removal and bioenergy production by microalgal treatment have attracted growing attention. However, the response of nitrogen metabolism to the sulfide-removal process has yet to be explored. Here, variable levels of sulfide could be completely removed by Chlamydomonas sp. Tai-03 under both high and low nitrate conditions in synthetic wastewaters. The highest sulfide removal rate of 5.56 mg-S L-1 h-1 was achieved with the addition of 100 mg L-1 sulfide in the presence of high nitrate. Meanwhile, sulfide was chemically oxidized to sulfate and then ingested by microalgae. Interestingly, sulfide-removal efficiency critically depended on nitrate concentration. Sulfide can also enhance the ability of microalgae to assimilate nitrogen. Based on the analysis of sulfur- and nitrogen-related metabolic profiling, serine as a precursor decreased by 94 % under low levels of nitrate, which induced the significant inhibition of cysteine and methionine biosynthesis. The results indicated that nitrogen source played a critical role in the sulfur cycle because of the positive relationship between the aforementioned metabolic processes and nitrate concentration. Additionally, sulfide can improve lipid and carbohydrate productivity under high levels of nitrate. This study enhances our understanding of the mechanisms underlying the simultaneous removal of sulfide and alternative bioenergy production.
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Klassen V, Blifernez-Klassen O, Bax J, Kruse O. Wastewater-borne microalga Chlamydomonas sp.: A robust chassis for efficient biomass and biomethane production applying low-N cultivation strategy. BIORESOURCE TECHNOLOGY 2020; 315:123825. [PMID: 32693344 DOI: 10.1016/j.biortech.2020.123825] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2020] [Revised: 07/06/2020] [Accepted: 07/08/2020] [Indexed: 05/16/2023]
Abstract
Biogas/biomethane generation from microalgae biomass via anaerobic fermentation is increasingly gaining attention as CO2-neutral energy source. Intensive research has shown, however, that microalgae represent a rather challenging substrate for anaerobic digestion (AD) due to their high cell wall recalcitrance and unfavourable protein content. Previously, the utilization of nitrogen-limited (low-N) microalgal biomass for continuous AD-processes was demonstrated (as proof-of-concept) with remarkable biomethane productivity. The present study shows the efficient portability of the low-N cultivation/fermentation strategy on a robust, wastewater-borne microalga isolate that tolerates high temperature and light conditions and can perfectly cope with microbial contaminations. Continuous long-term anaerobic digestion was characterized by stable and efficient specific biogas and biomethane productivity (765 ± 20 and 478 ± 15 mLNg-1 volatile solids (VS) d-1, respectively), equivalent to volumetric methane productivity of 1912 mLN L-1d-1. The present work underlines the applicability of low-N-biomass of wastewater-borne, robust microalgae as mono-substrate for highly efficient continuous methane generation.
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Poghosyan E, Iacovache I, Faltova L, Leitner A, Yang P, Diener DR, Aebersold R, Zuber B, Ishikawa T. The structure and symmetry of the radial spoke protein complex in Chlamydomonas flagella. J Cell Sci 2020; 133:jcs245233. [PMID: 32694165 DOI: 10.1242/jcs.245233] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Accepted: 06/25/2020] [Indexed: 12/27/2022] Open
Abstract
The radial spoke is a key element in a transducer apparatus controlling the motility of eukaryotic cilia. The transduction biomechanics is a long-standing question in cilia biology. The radial spoke has three regions - a spoke head, a bifurcated neck and a stalk. Although the neck and the stalk are asymmetric, twofold symmetry of the head has remained controversial. In this work we used single particle cryo-electron microscopy (cryo-EM) analysis to generate a 3D structure of the whole radial spoke at unprecedented resolution. We show the head region at 15 Å (1.5 nm) resolution and confirm twofold symmetry. Using distance constraints generated by cross-linking mass spectrometry, we locate two components, RSP2 and RSP4, at the head and neck regions. Our biophysical analysis of isolated RSP4, RSP9, and RSP10 affirmed their oligomeric state. Our results enable us to redefine the boundaries of the regions and propose a model of organization of the radial spoke component proteins.
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Julkowska M. Extreme Engineering: How Antarctic Algae Adapt to Hypersalinity. PLANT PHYSIOLOGY 2020; 183:427-428. [PMID: 32493802 PMCID: PMC7271776 DOI: 10.1104/pp.20.00467] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
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Maron L. Structure and function of an inorganic carbon transporter that captures CO 2 in green algae. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 102:1105-1106. [PMID: 32557968 DOI: 10.1111/tpj.14859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
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Amador GJ, Wei D, Tam D, Aubin-Tam ME. Fibrous Flagellar Hairs of Chlamydomonas reinhardtii Do Not Enhance Swimming. Biophys J 2020; 118:2914-2925. [PMID: 32502384 PMCID: PMC7300311 DOI: 10.1016/j.bpj.2020.05.003] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2019] [Revised: 04/06/2020] [Accepted: 04/27/2020] [Indexed: 01/18/2023] Open
Abstract
The flagella of Chlamydomonas reinhardtii possess fibrous ultrastructures of a nanometer-scale thickness known as mastigonemes. These structures have been widely hypothesized to enhance flagellar thrust; however, detailed hydrodynamic analysis supporting this claim is lacking. In this study, we present a comprehensive investigation into the hydrodynamic effects of mastigonemes using a genetically modified mutant lacking the fibrous structures. Through high-speed observations of freely swimming cells, we found the average and maximum swimming speeds to be unaffected by the presence of mastigonemes. In addition to swimming speeds, no significant difference was found for flagellar gait kinematics. After our observations of swimming kinematics, we present direct measurements of the hydrodynamic forces generated by flagella with and without mastigonemes. These measurements were conducted using optical tweezers, which enabled high temporal and spatial resolution of hydrodynamic forces. Through our measurements, we found no significant difference in propulsive flows due to the presence of mastigonemes. Direct comparison between measurements and fluid mechanical modeling revealed that swimming hydrodynamics were accurately captured without including mastigonemes on the modeled swimmer's flagella. Therefore, mastigonemes do not appear to increase the flagella's effective area while swimming, as previously thought. Our results refute the longstanding claim that mastigonemes enhance flagellar thrust in C. reinhardtii, and so, their function still remains enigmatic.
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Dell'Aglio E. Overcoming Algal Vitamin B12 Auxotrophy by Experimental Evolution. PLANT PHYSIOLOGY 2020; 183:15-16. [PMID: 32385175 PMCID: PMC7210650 DOI: 10.1104/pp.20.00274] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
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Behl K, SeshaCharan P, Joshi M, Sharma M, Mathur A, Kareya MS, Jutur PP, Bhatnagar A, Nigam S. Multifaceted applications of isolated microalgae Chlamydomonas sp. TRC-1 in wastewater remediation, lipid production and bioelectricity generation. BIORESOURCE TECHNOLOGY 2020; 304:122993. [PMID: 32078900 DOI: 10.1016/j.biortech.2020.122993] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2019] [Revised: 02/02/2020] [Accepted: 02/07/2020] [Indexed: 06/10/2023]
Abstract
Green microalga, Chlamydomonas sp. TRC-1 (C. TRC-1), isolated from the outlet of effluent treatment plant of textile dyeing mill, was investigated for its competence towards bioremediation. Algal biomass obtained after remediation (ABAR) was implied for bioelectricity and biofuel production. C. TRC-1 could completely decolorize the effluent in 7 days. Significant reduction in pollution-indicating parameters was observed. Chronoamperometric studies were carried out using cyclic voltammetry and electrochemical impedance spectroscopy (EIS). Maximum current density, power and power density of 3.6 A m-2, 4.13 × 10-4 W and 1.83 W m-2, respectively were generated in ABAR. EIS studies showed a decrease in resistance of ABAR, supporting better electron transfer as compared to algal biomass before remediation (ABBR). Its candidature for biofuel production was assessed by estimating the total lipid content. Results revealed enhancement in lipid content from 46.85% (ABBR) to 79.1% (ABAR). Current study advocates versatile potential of isolated C. TRC-1 for bioremediation of wastewater, bioelectricity production and biofuel generation.
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