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For: Shin Y, Brangwynne CP. Liquid phase condensation in cell physiology and disease. Science 2018;357:357/6357/eaaf4382. [PMID: 28935776 DOI: 10.1126/science.aaf4382] [Citation(s) in RCA: 2565] [Impact Index Per Article: 366.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Number Cited by Other Article(s)
51
Zhao J, Hu Y, Li H, Liu C, Nie Z, Chen Z, Ling Q, Li Z, Zhao P, Song B, Zhang K, Bian L. Liquid-Liquid Phase Separation-Mediated Cellular-Scale Compartmentalization of Hydrogel Covalent Cross-Linking Promotes Microtubule-Based Mechanosensing. J Am Chem Soc 2025;147:14336-14347. [PMID: 40252026 DOI: 10.1021/jacs.5c00079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/21/2025]
52
Patel CK, Mallik A, Rath DK, Kumar R, Mukherjee TK. Coalescence-Driven Local Crowding Promotes Liquid-to-Solid-Like Phase Transition in a Homogeneous and Heterogeneous Droplet Assembly: Regulatory Role of Ligands. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2025;41:10562-10575. [PMID: 40229215 DOI: 10.1021/acs.langmuir.5c00633] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/16/2025]
53
Shukla S, Lastorka SS, Uversky VN. Intrinsic Disorder and Phase Separation Coordinate Exocytosis, Motility, and Chromatin Remodeling in the Human Acrosomal Proteome. Proteomes 2025;13:16. [PMID: 40407495 PMCID: PMC12101322 DOI: 10.3390/proteomes13020016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2025] [Revised: 04/23/2025] [Accepted: 04/25/2025] [Indexed: 05/26/2025]  Open
54
Cheng Z, Wang H, Zhang Y, Ren B, Fu Z, Li Z, Tu C. Deciphering the role of liquid-liquid phase separation in sarcoma: Implications for pathogenesis and treatment. Cancer Lett 2025;616:217585. [PMID: 39999920 DOI: 10.1016/j.canlet.2025.217585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2024] [Revised: 02/04/2025] [Accepted: 02/21/2025] [Indexed: 02/27/2025]
55
Vangala VNP, Uversky VN. Intrinsic disorder in protein interaction networks linking cancer with metabolic diseases. Comput Biol Chem 2025;118:108493. [PMID: 40319601 DOI: 10.1016/j.compbiolchem.2025.108493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2025] [Revised: 04/20/2025] [Accepted: 04/24/2025] [Indexed: 05/07/2025]
56
Yao Y, Yan C, Huang H, Wang S, Li J, Chen Y, Qu X, Bao Q, Xu L, Zhang Y, Fan D, He X, Liu Y, Zhang Y, Yang Y, Tang Z. LncRNA-MEG3 Regulates Muscle Mass and Metabolic Homeostasis by Facilitating SUZ12 Liquid-Liquid Phase Separation. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2025:e2417715. [PMID: 40285575 DOI: 10.1002/advs.202417715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2024] [Revised: 03/30/2025] [Indexed: 04/29/2025]
57
Schmitt MT, Kroll J, Ruiz-Fernandez MJA, Hauschild R, Ghosh S, Kameritsch P, Merrin J, Schmid J, Stefanowski K, Thomae AW, Cheng J, Öztan GN, Konopka P, Ortega GC, Penz T, Bach L, Baumjohann D, Bock C, Straub T, Meissner F, Kiermaier E, Renkawitz J. Protecting centrosomes from fracturing enables efficient cell navigation. SCIENCE ADVANCES 2025;11:eadx4047. [PMID: 40279414 PMCID: PMC12024656 DOI: 10.1126/sciadv.adx4047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2025] [Accepted: 03/20/2025] [Indexed: 04/27/2025]
58
Pougy KC, Brito BA, Melo GS, Pinheiro AS. Phase separation as a key mechanism in plant development, environmental adaptation, and abiotic stress response. J Biol Chem 2025:108548. [PMID: 40286852 DOI: 10.1016/j.jbc.2025.108548] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2024] [Revised: 04/14/2025] [Accepted: 04/22/2025] [Indexed: 04/29/2025]  Open
59
Pert EK, Batton CH, Li X, Dunne S, Rotskoff GM. Scaling Field-Theoretic Simulation for Multicomponent Mixtures with Neural Operators. J Chem Theory Comput 2025;21:4167-4175. [PMID: 40168529 DOI: 10.1021/acs.jctc.5c00102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2025]
60
So CL, Lee YJ, Vokshi BH, Chen W, Huang B, De Sousa E, Gao Y, Portuallo ME, Begum S, Jagirdar K, Linehan WM, Rebecca VW, Ji H, Toska E, Cai D. TFE3 fusion oncoprotein condensates drive transcriptional reprogramming and cancer progression in translocation renal cell carcinoma. Cell Rep 2025;44:115539. [PMID: 40222010 PMCID: PMC12077596 DOI: 10.1016/j.celrep.2025.115539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2024] [Revised: 01/28/2025] [Accepted: 03/18/2025] [Indexed: 04/15/2025]  Open
61
Ohno H, Kijima J, Ochi Y, Shoji M, Taira J, Mabuchi T, Sato Y. Oligolysine Enhances and Inhibits DNA Condensate Formation. ACS OMEGA 2025;10:15781-15789. [PMID: 40290937 PMCID: PMC12019750 DOI: 10.1021/acsomega.5c01928] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/01/2025] [Revised: 03/21/2025] [Accepted: 03/28/2025] [Indexed: 04/30/2025]
62
Pandey V, Hosokawa T, Hayashi Y, Urakubo H. Multiphasic protein condensation governed by shape and valency. Cell Rep 2025;44:115504. [PMID: 40199325 DOI: 10.1016/j.celrep.2025.115504] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2024] [Revised: 02/05/2025] [Accepted: 03/12/2025] [Indexed: 04/10/2025]  Open
63
Huang X, Feng X, Yan YH, Xu D, Wang K, Zhu C, Dong MQ, Huang X, Guang S, Chen X. Compartmentalized localization of perinuclear proteins within germ granules in C. elegans. Dev Cell 2025;60:1251-1270.e3. [PMID: 39742661 DOI: 10.1016/j.devcel.2024.12.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Revised: 08/26/2024] [Accepted: 12/06/2024] [Indexed: 01/04/2025]
64
Begeman A, Smolka JA, Shami A, Waingankar TP, Lewis SC. Spatial analysis of mitochondrial gene expression reveals dynamic translation hubs and remodeling in stress. SCIENCE ADVANCES 2025;11:eads6830. [PMID: 40249810 PMCID: PMC12007585 DOI: 10.1126/sciadv.ads6830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2024] [Accepted: 03/14/2025] [Indexed: 04/20/2025]
65
Wang H, Hoffmann C, Tromm JV, Su X, Elliott J, Wang H, Deng M, McClenaghan C, Baum J, Pang ZP, Milovanovic D, Shi Z. Live-cell quantification reveals viscoelastic regulation of synapsin condensates by α-synuclein. SCIENCE ADVANCES 2025;11:eads7627. [PMID: 40249817 PMCID: PMC12007584 DOI: 10.1126/sciadv.ads7627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2024] [Accepted: 03/12/2025] [Indexed: 04/20/2025]
66
Gao C, Gao A, Jiang Y, Gao R, Guo Y, Peng Z, Jiang W, Zhang M, Zhou Z, Yan C, Fang W, Hu H, Zhu G, Zhang J. Hypoxia-induced phase separation of ZHX2 alters chromatin looping to drive cancer metastasis. Mol Cell 2025;85:1525-1542.e10. [PMID: 40185097 DOI: 10.1016/j.molcel.2025.03.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Revised: 01/12/2025] [Accepted: 03/07/2025] [Indexed: 04/07/2025]
67
Park KH, Yu E, Choi S, Kim S, Park C, Lee JE, Kim KW. Optogenetic induction of TDP-43 aggregation impairs neuronal integrity and behavior in Caenorhabditis elegans. Transl Neurodegener 2025;14:20. [PMID: 40234916 PMCID: PMC12001655 DOI: 10.1186/s40035-025-00480-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2024] [Accepted: 03/10/2025] [Indexed: 04/17/2025]  Open
68
Long T, Lu Y, Ma Y, Song Y, Yi X, Chen X, Zhou M, Ma J, Chen J, Liu Z, Zhu F, Hu Z, Zhou Z, Li C, Hou FF, Zhang L, Chen Y, Nie J. Condensation of cellular prion protein promotes renal fibrosis through the TBK1-IRF3 signaling axis. Sci Transl Med 2025;17:eadj9095. [PMID: 40238918 DOI: 10.1126/scitranslmed.adj9095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 07/19/2024] [Accepted: 03/26/2025] [Indexed: 04/18/2025]
69
Skelly E, Bayard CJ, Jarusek J, Clark B, Rebolledo LP, Radwan Y, Nguyen P, Andrade-Muñoz M, Deaton TA, Lushnikov A, LeBlanc SJ, Krasnoslobodtsev AV, Yingling YG, Afonin KA. Design and Characterization of DNA-Driven Condensates: Regulating Topology, Mechanical Properties, and Immunorecognition. ACS APPLIED MATERIALS & INTERFACES 2025;17:22322-22336. [PMID: 40168179 PMCID: PMC12012714 DOI: 10.1021/acsami.5c00428] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2025] [Revised: 03/07/2025] [Accepted: 03/19/2025] [Indexed: 04/03/2025]
70
Huang LY, Wang TT, Shi PT, Song ZY, Chen WF, Liu NN, Ai X, Li HH, Hou XM, Wang LB, Chen KM, Rety S, Xi XG. NAL1 forms a molecular cage to regulate FZP phase separation. Proc Natl Acad Sci U S A 2025;122:e2419961122. [PMID: 40203040 PMCID: PMC12012508 DOI: 10.1073/pnas.2419961122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2024] [Accepted: 02/27/2025] [Indexed: 04/11/2025]  Open
71
Boccalini M, Berezovska Y, Bussi G, Paloni M, Barducci A. Exploring RNA destabilization mechanisms in biomolecular condensates through atomistic simulations. Proc Natl Acad Sci U S A 2025;122:e2425261122. [PMID: 40203038 PMCID: PMC12012522 DOI: 10.1073/pnas.2425261122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2024] [Accepted: 03/09/2025] [Indexed: 04/11/2025]  Open
72
Li W, Xu K. Super-Resolution Mapping and Quantification of Molecular Diffusion via Single-Molecule Displacement/Diffusivity Mapping (SMdM). Acc Chem Res 2025;58:1224-1235. [PMID: 40183356 PMCID: PMC12032829 DOI: 10.1021/acs.accounts.4c00850] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2025]
73
Liu S, Wang C, Zhang B. Toward Predictive Coarse-Grained Simulations of Biomolecular Condensates. Biochemistry 2025;64:1750-1761. [PMID: 40172489 DOI: 10.1021/acs.biochem.4c00737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/04/2025]
74
Duan X, Duan S, Han Z, Lv H, Yu H, Liu B. Aqueous Two-Phase Submicron Droplets Catalyze DNA Nanostructure Assembly for Confined Fluorescent Biosensing. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2025:e2417287. [PMID: 40231848 DOI: 10.1002/advs.202417287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2024] [Revised: 03/15/2025] [Indexed: 04/16/2025]
75
Seth S, Bhattacharya A. Accelerated Missense Mutation Identification in Intrinsically Disordered Proteins Using Deep Learning. Biomacromolecules 2025;26:2106-2115. [PMID: 40072940 DOI: 10.1021/acs.biomac.4c01124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/14/2025]
76
Yang S, Lee KH. Spontaneous Hollow Coacervate Transition of Silk Fibroin via Dilution and Its Transition to Microcapsules. Biomacromolecules 2025;26:2513-2528. [PMID: 40063534 PMCID: PMC12004510 DOI: 10.1021/acs.biomac.5c00003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2025] [Revised: 03/05/2025] [Accepted: 03/05/2025] [Indexed: 04/15/2025]
77
Velichko AK, Petrova NV, Deriglazov DA, Kovina AP, Luzhin AV, Kazakov EP, Kireev II, Razin S, Kantidze OL. Treacle's ability to form liquid-like phase condensates is essential for nucleolar fibrillar center assembly, efficient rRNA transcription and processing, and rRNA gene repair. eLife 2025;13:RP96722. [PMID: 40223701 PMCID: PMC11996177 DOI: 10.7554/elife.96722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/15/2025]  Open
78
Huang H, Hu J. Applications of Liquid-Liquid Phase Separation in Biosensing. Chembiochem 2025;26:e202500028. [PMID: 39920037 DOI: 10.1002/cbic.202500028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2025] [Revised: 02/06/2025] [Accepted: 02/07/2025] [Indexed: 02/09/2025]
79
Bal S, Gupta S, Mahato C, Das D. Catalytically Active Coacervates Sustained Out-of-Equilibrium. Angew Chem Int Ed Engl 2025:e202505296. [PMID: 40228063 DOI: 10.1002/anie.202505296] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2025] [Revised: 04/08/2025] [Accepted: 04/14/2025] [Indexed: 04/16/2025]
80
Chen S, Wang Y, Zhang J, Liu B, Liu W, Cao G, Li R, Li H, Zhai N, Song X, Zhang S, Lv C. YTHDC1 phase separation drives the nuclear export of m6A-modified lncNONMMUT062668.2 through the transport complex SRSF3-ALYREF-XPO5 to aggravate pulmonary fibrosis. Cell Death Dis 2025;16:279. [PMID: 40221424 PMCID: PMC11993731 DOI: 10.1038/s41419-025-07608-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2024] [Revised: 03/23/2025] [Accepted: 03/31/2025] [Indexed: 04/14/2025]
81
Erkamp NA, Farag M, Qiu Y, Qian D, Sneideris T, Wu T, Welsh TJ, Ausserwöger H, Krug TJ, Chauhan G, Weitz DA, Lew MD, Knowles TPJ, Pappu RV. Differential interactions determine anisotropies at interfaces of RNA-based biomolecular condensates. Nat Commun 2025;16:3463. [PMID: 40216775 PMCID: PMC11992113 DOI: 10.1038/s41467-025-58736-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2024] [Accepted: 04/01/2025] [Indexed: 04/14/2025]  Open
82
Bagchi D, Maity A, Saini K, Tabassum H, Nath P, Vishwakarma S, Chakraborty A. Visual Monitoring of Biomolecular Self-Assembly Dynamics and Imaging of Protein Aggregates by Distinct Emission of a Unique Hydrophobic Carbon Dot. J Phys Chem Lett 2025;16:3501-3508. [PMID: 40162582 DOI: 10.1021/acs.jpclett.5c00129] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/02/2025]
83
Tang D, Zhu J, Wang H, Chen N, Wang H, Huang Y, Jiang L. Universal membranization of synthetic coacervates and biomolecular condensates towards ultrastability and spontaneous emulsification. Nat Chem 2025:10.1038/s41557-025-01800-4. [PMID: 40211087 DOI: 10.1038/s41557-025-01800-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2024] [Accepted: 03/10/2025] [Indexed: 04/12/2025]
84
Jiang X, Hou Z. Activity-Induced Droplet Inversion in Multicomponent Liquid-Liquid Phase Separation. J Chem Theory Comput 2025;21:3745-3751. [PMID: 40138573 DOI: 10.1021/acs.jctc.5c00162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2025]
85
Conti BA, Novikov L, Tong D, Xiang Q, Vigil S, McLellan TJ, Nguyen C, De La Cruz N, Veettil RT, Pradhan P, Sahasrabudhe P, Arroyo JD, Shang L, Sabari BR, Shields DJ, Oppikofer M. N6-methyladenosine in DNA promotes genome stability. eLife 2025;13:RP101626. [PMID: 40193195 PMCID: PMC11975372 DOI: 10.7554/elife.101626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/09/2025]  Open
86
Anderson PJ, Xiao P, Zhong Y, Kaakati A, Alfonso-DeSouza J, Zhang T, Zhang C, Yu K, Qi L, Ding W, Liu S, Pani B, Krishnan A, Chen O, Jassal C, Strawn J, Sun JP, Rajagopal S. β-Arrestin Condensates Regulate G Protein-Coupled Receptor Function. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.04.05.647240. [PMID: 40236194 PMCID: PMC11996538 DOI: 10.1101/2025.04.05.647240] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 04/17/2025]
87
Zhan A, Zhong K, Zhang K. Novel subcellular regulatory mechanisms of protein homeostasis and its implications in amyotrophic lateral sclerosis. Biochem Biophys Res Commun 2025;756:151582. [PMID: 40056503 DOI: 10.1016/j.bbrc.2025.151582] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2024] [Revised: 02/26/2025] [Accepted: 03/03/2025] [Indexed: 03/10/2025]
88
Dave R, Pandey K, Patel R, Solanki R, Gour N, Bhatia D. Phase Separation in Biological Systems: Implications for Disease Pathogenesis. Chembiochem 2025:e2400883. [PMID: 40180594 DOI: 10.1002/cbic.202400883] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2024] [Revised: 04/03/2025] [Accepted: 04/03/2025] [Indexed: 04/05/2025]
89
Pérez-Sala D, Zorrilla S. Versatility of vimentin assemblies: From filaments to biomolecular condensates and back. Eur J Cell Biol 2025;104:151487. [PMID: 40194320 DOI: 10.1016/j.ejcb.2025.151487] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2024] [Revised: 02/26/2025] [Accepted: 03/24/2025] [Indexed: 04/09/2025]  Open
90
Hashimoto Y, Shil S, Tsuruta M, Kawauchi K, Miyoshi D. Three- and four-stranded nucleic acid structures and their ligands. RSC Chem Biol 2025;6:466-491. [PMID: 40007865 PMCID: PMC11848209 DOI: 10.1039/d4cb00287c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2024] [Accepted: 02/18/2025] [Indexed: 02/27/2025]  Open
91
Wang Q, Gong Z, Zhu Z. High temperature-responsive DEAR4 condensation confers thermotolerance through recruiting TOPLESS in Arabidopsis nucleus. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2025;122:e70172. [PMID: 40265976 DOI: 10.1111/tpj.70172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2025] [Revised: 03/25/2025] [Accepted: 04/08/2025] [Indexed: 04/24/2025]
92
Zou G, Tang Y, Yang J, Fu S, Li Y, Ren X, Zhou N, Zhao W, Gao J, Ruan Z, Jiang Z. Signal-induced NLRP3 phase separation initiates inflammasome activation. Cell Res 2025:10.1038/s41422-025-01096-6. [PMID: 40164768 DOI: 10.1038/s41422-025-01096-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2024] [Accepted: 03/03/2025] [Indexed: 04/02/2025]  Open
93
Mayfield A, Zhang X, Efremov I, Kauffman MG, Reilly JF, Eftekharzadeh B. Corelet™ platform: Precision high throughput screening for targeted drug discovery of biomolecular condensates. SLAS DISCOVERY : ADVANCING LIFE SCIENCES R & D 2025;32:100224. [PMID: 40024444 DOI: 10.1016/j.slasd.2025.100224] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2024] [Revised: 02/22/2025] [Accepted: 02/27/2025] [Indexed: 03/04/2025]
94
Yang J, Wan SY, Song QY, Xie YH, Wan J, Zhou YH, Zhang ZT, Xiao YS, Li X, Chen H, Liu XR, Xu L, You HJ, Hu DS, Petersen RB, Zhang YH, Zheng L, Zhang Y, Huang K. Angiopoietin-like protein 8 directs DNA damage responses towards apoptosis by stabilizing PARP1-DNA condensates. Cell Death Differ 2025;32:672-688. [PMID: 39592710 PMCID: PMC11982567 DOI: 10.1038/s41418-024-01422-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Revised: 11/14/2024] [Accepted: 11/20/2024] [Indexed: 11/28/2024]  Open
95
Wang H, Zhao B, Zhang J, Hu Q, Zhou L, Zhang Y, Cai Y, Qu Y, Jiang T, Zhang D. N4-Acetylcytidine-Mediated CD2BP2-DT Drives YBX1 Phase Separation to Stabilize CDK1 and Promote Breast Cancer Progression. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2025;12:e2411834. [PMID: 39976088 PMCID: PMC12005790 DOI: 10.1002/advs.202411834] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2024] [Revised: 02/03/2025] [Indexed: 02/21/2025]
96
von Bülow S, Tesei G, Zaidi FK, Mittag T, Lindorff-Larsen K. Prediction of phase-separation propensities of disordered proteins from sequence. Proc Natl Acad Sci U S A 2025;122:e2417920122. [PMID: 40131954 PMCID: PMC12002312 DOI: 10.1073/pnas.2417920122] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2024] [Accepted: 02/12/2025] [Indexed: 03/27/2025]  Open
97
Jang GJ, Payne-Dwyer AL, Maple R, Wu Z, Liu F, Lopez SG, Wang Y, Fang X, Leake MC, Dean C. Modular in vivo assembly of Arabidopsis FCA oligomers into condensates competent for RNA 3' processing. EMBO J 2025;44:2056-2074. [PMID: 39994485 PMCID: PMC11962161 DOI: 10.1038/s44318-025-00394-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2024] [Revised: 01/26/2025] [Accepted: 02/06/2025] [Indexed: 02/26/2025]  Open
98
Sabari BR, Hyman AA, Hnisz D. Functional specificity in biomolecular condensates revealed by genetic complementation. Nat Rev Genet 2025;26:279-290. [PMID: 39433596 DOI: 10.1038/s41576-024-00780-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/05/2024] [Indexed: 10/23/2024]
99
Liu J, Li X, Wang K, Wang T, Meng Y, Peng Z, Huang J, Huo J, Zhu X, Yang J, Fan Y, Xu F, Zhang Q, Wang Z, Wang Y, Chen H, Xu W. The splicing auxiliary factor OsU2AF35a enhances thermotolerance via protein separation and promoting proper splicing of OsHSA32 pre-mRNA in rice. PLANT BIOTECHNOLOGY JOURNAL 2025;23:1308-1328. [PMID: 39844526 PMCID: PMC11933845 DOI: 10.1111/pbi.14587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2024] [Revised: 12/20/2024] [Accepted: 12/31/2024] [Indexed: 01/24/2025]
100
Lalchand P, Ashley DD, Pan X. Biomolecular condensates at the plasma membrane: Insights into plant cell signaling. CURRENT OPINION IN PLANT BIOLOGY 2025;84:102697. [PMID: 39999604 DOI: 10.1016/j.pbi.2025.102697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/01/2025] [Revised: 01/31/2025] [Accepted: 02/04/2025] [Indexed: 02/27/2025]
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