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For: Gurevich A, Saveliev V, Vyahhi N, Tesler G. QUAST: quality assessment tool for genome assemblies. ACTA ACUST UNITED AC 2013;29:1072-5. [PMID: 23422339 DOI: 10.1093/bioinformatics/btt086] [Citation(s) in RCA: 6436] [Impact Index Per Article: 536.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Number Cited by Other Article(s)
101
Hien VT, Lanh PT, Pham TTP, Tran KN, Duy ND, Hoa NT, Canh NX, Nguyen QH, Kim S, Quyen DV. Isolation and characterization of a novel lytic bacteriophage Pv27 with biocontrol potential against Vibrio parahaemolyticus infections in shrimp. PeerJ 2025;13:e19421. [PMID: 40352283 PMCID: PMC12063606 DOI: 10.7717/peerj.19421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2025] [Accepted: 04/14/2025] [Indexed: 05/14/2025]  Open
102
Wang Y, Chen C, Zhou B, Zhang Y, Qin J, Huang J, Li X. Presence of high-risk ARGs with greater diversity and abundance in the rare resistome in wastewater across China. JOURNAL OF HAZARDOUS MATERIALS 2025;488:137435. [PMID: 39899931 DOI: 10.1016/j.jhazmat.2025.137435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2024] [Revised: 01/10/2025] [Accepted: 01/27/2025] [Indexed: 02/05/2025]
103
Gozashti L, Harringmeyer OS, Hoekstra HE. How repeats rearrange chromosomes: The molecular basis of chromosomal inversions in deer mice. Cell Rep 2025;44:115644. [PMID: 40327505 DOI: 10.1016/j.celrep.2025.115644] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2024] [Revised: 01/08/2025] [Accepted: 04/11/2025] [Indexed: 05/08/2025]  Open
104
Herbert J, Thompson S, Beckett AH, Robson SC. Impact of microbiological molecular methodologies on adaptive sampling using nanopore sequencing in metagenomic studies. ENVIRONMENTAL MICROBIOME 2025;20:47. [PMID: 40325409 PMCID: PMC12054170 DOI: 10.1186/s40793-025-00704-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Accepted: 04/08/2025] [Indexed: 05/07/2025]
105
A J, Reddy B, Eapen SJ, Javed M, M A, A K. Pathogenomics Insights into Phytophthora capsici and Phytophthora tropicalis -Sibling Species Causing Black Pepper Foot Rot: Genomic Architecture, Metabolic Pathways, and Effector Diversity. Gene 2025;947:149328. [PMID: 39952485 DOI: 10.1016/j.gene.2025.149328] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2024] [Revised: 02/08/2025] [Accepted: 02/10/2025] [Indexed: 02/17/2025]
106
Becchimanzi A, Zimowska B, Calandrelli MM, De Masi L, Nicoletti R. Genome Sequencing of a Fusarium Endophytic Isolate from Hazelnut: Phylogenetic and Metabolomic Implications. Int J Mol Sci 2025;26:4377. [PMID: 40362614 PMCID: PMC12072968 DOI: 10.3390/ijms26094377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2025] [Revised: 04/27/2025] [Accepted: 05/03/2025] [Indexed: 05/15/2025]  Open
107
Rodríguez-Santiago J, Alvarado-Delgado A, Rodríguez-Medina N, Garza-González E, Tellez-Sosa J, Duarte-Zambrano L, Nava-Domínguez N, Sohlenkamp C, Vences-Guzmán MA, López-Jácome LE, Morfin-Otero R, Rodriguez-Noriega E, Hernández-Castro R, Mireles-Dávalos C, Becerril-Vargas E, Mena-Ramírez JP, Cruz-García E, Garza-Ramos U. Colistin-resistant Klebsiella pneumoniae species complex: The scenario in Mexico. J Glob Antimicrob Resist 2025:S2213-7165(25)00098-0. [PMID: 40334840 DOI: 10.1016/j.jgar.2025.04.024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2025] [Revised: 04/04/2025] [Accepted: 04/25/2025] [Indexed: 05/09/2025]  Open
108
Quah FX, Almeida MV, Blumer M, Yuan CU, Fischer B, See K, Jackson B, Zatha R, Rusuwa B, Turner GF, Santos ME, Svardal H, Hemberg M, Durbin R, Miska E. Lake Malawi cichlid pangenome graph reveals extensive structural variation driven by transposable elements. Genome Res 2025;35:1094-1107. [PMID: 40210437 PMCID: PMC12047535 DOI: 10.1101/gr.279674.124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2024] [Accepted: 02/06/2025] [Indexed: 04/12/2025]
109
He S, Ding Q, Wu W, Zhang Y, Kang Y, Meng Y, Zhu S, Wu J. Unraveling the genetic traits and functional diversity of the pan-genome in Pantoea dispersa. BMC Genomics 2025;26:435. [PMID: 40316932 PMCID: PMC12046954 DOI: 10.1186/s12864-025-11625-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2024] [Accepted: 04/22/2025] [Indexed: 05/04/2025]  Open
110
Gravey F, Sévin C, Langlois B, Maillard K, Foucher N, Duquesne F, Léon A, Le Hello S, Petry S. Misidentification of Raoultella spp. (R. terrigena, R. planticola) and Klebsiella spp. (K. variicola, K. grimontii) as Klebsiella pneumoniae: Retrospective study of a necropsy-associated bacterial collection from horses. Vet Microbiol 2025;304:110497. [PMID: 40156970 DOI: 10.1016/j.vetmic.2025.110497] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2024] [Revised: 03/12/2025] [Accepted: 03/25/2025] [Indexed: 04/01/2025]
111
Slavinska A, Jauneikaite E, Meškytė U, Kirkliauskienė A, Misevič A, Petrutienė A, Kuisiene N. Genomic characterization of Listeria monocytogenes isolated from normally sterile human body fluids in Lithuania from 2016 to 2021. Microb Genom 2025;11. [PMID: 40392696 DOI: 10.1099/mgen.0.001410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/22/2025]  Open
112
Parzygnat JL, Crespo R, Fosnaught M, Muyyarrikkandy M, Hull D, Harden L, Thakur S. Megaplasmid Dissemination in Multidrug-Resistant Salmonella Serotypes from Backyard and Commercial Broiler Production Systems in the Southeastern United States. Foodborne Pathog Dis 2025;22:322-331. [PMID: 38635963 DOI: 10.1089/fpd.2023.0181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/20/2024]  Open
113
Calcagnile M, Quarta E, Sicuro A, Pecoraro L, Schiavone R, Tredici SM, Talà A, Corallo A, Verri T, Stabili L, Alifano P. Effect of Bacillus velezensis MT9 on Nile Tilapia (Oreochromis Niloticus) Intestinal Microbiota. MICROBIAL ECOLOGY 2025;88:37. [PMID: 40310547 PMCID: PMC12045831 DOI: 10.1007/s00248-025-02531-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2025] [Accepted: 04/08/2025] [Indexed: 05/02/2025]
114
Ding J, Zhang M, Chang J, Hu Z, He P, Wang J, Feng L. Characterization of a multidrug-resistant hypovirulent ST1859-KL35 klebsiella quasipneumoniae subsp. similipneumoniae strain co-harboring tmexCD2-toprJ2 and blaKPC-2. J Glob Antimicrob Resist 2025;42:253-261. [PMID: 40113085 DOI: 10.1016/j.jgar.2025.03.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2024] [Revised: 02/18/2025] [Accepted: 03/11/2025] [Indexed: 03/22/2025]  Open
115
Sliti A, Kim RH, Lee D, Shin JH. Whole genome sequencing and In silico analysis of the safety and probiotic features of Lacticaseibacillus paracasei FMT2 isolated from fecal microbiota transplantation (FMT) capsules. Microb Pathog 2025;202:107405. [PMID: 40024538 DOI: 10.1016/j.micpath.2025.107405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2024] [Revised: 02/13/2025] [Accepted: 02/20/2025] [Indexed: 03/04/2025]
116
Wang T, Ahmad S, Cruz-Lebrón A, Ernst SE, Olivos Caicedo KY, Jeong Y, Binion B, Mbuvi P, Dutta D, Fernandez-Materan FV, Breister AM, Tang E, Lee JW, Kang JD, Harris SC, Ikegawa S, Gaskins HR, Erdman JW, Yang G, Cann I, Daniel SL, Hylemon PB, Anantharaman K, Bernardi RC, Alves JMP, Sfanos KS, Irudayaraj J, Ridlon JM. An expanded metabolic pathway for androgen production by commensal bacteria. Nat Microbiol 2025;10:1084-1098. [PMID: 40259019 DOI: 10.1038/s41564-025-01979-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2024] [Accepted: 03/06/2025] [Indexed: 04/23/2025]
117
Song WL, Chen BZ, Feng L, Chen G, He SM, Hao B, Zhang GH, Dong Y, Yang SC. Telomere-to-telomere genome assembly and 3D chromatin architecture of Centella asiatica insight into evolution and genetic basis of triterpenoid saponin biosynthesis. HORTICULTURE RESEARCH 2025;12:uhaf037. [PMID: 40236733 PMCID: PMC11997435 DOI: 10.1093/hr/uhaf037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/10/2024] [Accepted: 01/23/2025] [Indexed: 04/17/2025]
118
Al-Marzooq F, Ghazawi A, Allam M, Collyns T. Deciphering the genetic context of the emerging OXA-484-producing carbapenem-resistant Escherichia coli from ST167 high-risk clone in the United Arab Emirates. Eur J Clin Microbiol Infect Dis 2025;44:1155-1166. [PMID: 40019666 DOI: 10.1007/s10096-025-05082-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2025] [Accepted: 02/21/2025] [Indexed: 03/01/2025]
119
Garrido-Sanz D, Keel C. Seed-borne bacteria drive wheat rhizosphere microbiome assembly via niche partitioning and facilitation. Nat Microbiol 2025;10:1130-1144. [PMID: 40140705 PMCID: PMC12055584 DOI: 10.1038/s41564-025-01973-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2024] [Accepted: 02/26/2025] [Indexed: 03/28/2025]
120
Newstead L, Smith-Zaitlik T, Kelly C, Roberts E, Street S, Paterson G. Genomic characterization of Pseudomonas aeruginosa from canine otitis highlights the need for a One Health approach to this opportunistic pathogen. Microb Genom 2025;11:001407. [PMID: 40310270 PMCID: PMC12046095 DOI: 10.1099/mgen.0.001407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2024] [Accepted: 04/03/2025] [Indexed: 05/02/2025]  Open
121
Worden P, Webster A, Gandhi K, Gupta R, Deutscher AT, Hornitzky M, Bogema DR. Genomic diversity and tracing of Paenibacillus larvae in Australia: implications for American foulbrood outbreak surveillance in low-diversity populations. Microb Genom 2025;11. [PMID: 40327033 DOI: 10.1099/mgen.0.001374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/07/2025]  Open
122
Vasilchenko AS, Lukyanov DA, Dilbaryan DS, Usachev KS, Poshvina DV, Taldaev AK, Nikandrova AA, Imamutdinova AN, Garaeva NS, Bikmullin AG, Klochkova EA, Rusanov AL, Romashin DD, Luzgina NG, Osterman IA, Sergiev PV, Teslya AV. Macrolactin a is an inhibitor of protein biosynthesis in bacteria. Biochimie 2025;232:25-34. [PMID: 39826886 DOI: 10.1016/j.biochi.2025.01.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2024] [Revised: 01/10/2025] [Accepted: 01/14/2025] [Indexed: 01/22/2025]
123
Le NT, Hoang PH, Nguyen Q, Truong MNH, Van Dang C, Ho TH, Hoang PL, Truong DQ, Nguyen HTT, Van Le C, Phan TTP. Emergence of mcr-8.2-mediated colistin resistance in Klebsiella pneumoniae isolated from pediatric diarrhea cases in southern Vietnam. J Glob Antimicrob Resist 2025;42:120-126. [PMID: 39988071 DOI: 10.1016/j.jgar.2025.02.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2024] [Revised: 02/06/2025] [Accepted: 02/08/2025] [Indexed: 02/25/2025]  Open
124
Peeters C, Steyaert S, Shelomi M, Wieme AD, Depoorter E, De Canck E, Houf K, Vandamme P. Imbroritus primus gen. nov., sp. nov., a facultatively autotrophic bacterium from environmental water samples. Int J Syst Evol Microbiol 2025;75. [PMID: 40359131 DOI: 10.1099/ijsem.0.006781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/15/2025]  Open
125
Boueroy P, Phetburom N, Duangjanchot R, Wongsurawat T, Jenjaroenpun P, Chopjitt P, Hatrongjit R, Zheng H, Li J, Kerdsin A. Genomic characterization of Streptococcus suis serotype 31 isolated from one human and 17 clinically asymptomatic pigs in Thailand. Vet Microbiol 2025;304:110482. [PMID: 40107014 DOI: 10.1016/j.vetmic.2025.110482] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2024] [Revised: 03/09/2025] [Accepted: 03/12/2025] [Indexed: 03/22/2025]
126
Ortega-Sanz I, Rovira J, Megías G, Rivero-Pérez MD, Melero B. Genome-Wide association study to identify genetic markers associated with Campylobacter jejuni motility. Microb Pathog 2025;205:107657. [PMID: 40318771 DOI: 10.1016/j.micpath.2025.107657] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2024] [Revised: 04/18/2025] [Accepted: 04/30/2025] [Indexed: 05/07/2025]
127
Chan BK, Stanley GL, Kortright KE, Vill AC, Modak M, Ott IM, Sun Y, Würstle S, Grun CN, Kazmierczak BI, Rajagopalan G, Harris ZM, Britto CJ, Stewart J, Talwalkar JS, Appell CR, Chaudary N, Jagpal SK, Jain R, Kanu A, Quon BS, Reynolds JM, Teneback CC, Mai QA, Shabanova V, Turner PE, Koff JL. Personalized inhaled bacteriophage therapy for treatment of multidrug-resistant Pseudomonas aeruginosa in cystic fibrosis. Nat Med 2025;31:1494-1501. [PMID: 40301561 PMCID: PMC12092284 DOI: 10.1038/s41591-025-03678-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Accepted: 03/27/2025] [Indexed: 05/01/2025]
128
Songo A, Jacquier H, Danjean M, Compain F, Dorchène D, Edoo Z, Woerther PL, Arthur M, Lebeaux D. Analysis of two Nocardia brasiliensis class A β-lactamases (BRA-1 and BRS-1) and related resistance to β-lactam antibiotics. J Glob Antimicrob Resist 2025;42:135-141. [PMID: 39947613 DOI: 10.1016/j.jgar.2025.01.022] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2024] [Revised: 01/21/2025] [Accepted: 01/31/2025] [Indexed: 03/24/2025]  Open
129
Fang Y, Li X, Wu Z, Fang Y, Wang Y, Li X, Bu L, Chen K, Shen K, Ma Y, Wu M. Emergence of an XDR Klebsiella pneumoniae ST5491 strain co-harboring NDM-5, MCR-1.1, tmexCD1-toprJ1, and a novel plasmid carrying CTX-M-15. Front Microbiol 2025;16:1581851. [PMID: 40371110 PMCID: PMC12075367 DOI: 10.3389/fmicb.2025.1581851] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2025] [Accepted: 04/14/2025] [Indexed: 05/16/2025]  Open
130
Shave CD, Haider MJA, Onyishi CU, McDonald MC, Stones L, Jagielski T, May RC. Phylogenetic analysis of pathogenic algae reveals lineage-dependent patterns of phagocytosis. mBio 2025:e0049825. [PMID: 40304495 DOI: 10.1128/mbio.00498-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2025] [Accepted: 04/07/2025] [Indexed: 05/02/2025]  Open
131
Howlader AA, Nahiduzzaman F, Annan RI, Saha A, Ariful Islam M, Minara Khatun M. Draft whole-genome sequence of multidrug-resistant Enterococcus faecium strain MKL_BAU_Fe01 isolated from chicken meat. Microbiol Resour Announc 2025:e0004325. [PMID: 40304481 DOI: 10.1128/mra.00043-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2025] [Accepted: 03/31/2025] [Indexed: 05/02/2025]  Open
132
Sonawala U, Busidan A, Haak D, Pilot G. Characterization and whole genome sequencing of Saccharomyces cerevisiae strains lacking several amino acid transporters: Tools for studying amino acid transport. PLoS One 2025;20:e0315789. [PMID: 40305508 PMCID: PMC12043151 DOI: 10.1371/journal.pone.0315789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2024] [Accepted: 03/17/2025] [Indexed: 05/02/2025]  Open
133
Kaufmann H, Salvador C, Salazar VW, Cruz N, Dias GM, Tschoeke D, Campos L, Sawabe T, Miyazaki M, Maruyama F, Thompson F, Thompson C. Genomic Repertoire of Twenty-Two Novel Vibrionaceae Species Isolated from Marine Sediments. MICROBIAL ECOLOGY 2025;88:36. [PMID: 40301151 PMCID: PMC12041005 DOI: 10.1007/s00248-025-02533-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2024] [Accepted: 04/10/2025] [Indexed: 05/01/2025]
134
Bespalova AV, Kulikova DA, Zelentsova ES, Rezvykh AP, Guseva IO, Dorador AP, Evgen’ev MB, Funikov SY. Paramutation-Like Behavior of Genic piRNA-Producing Loci in Drosophila virilis. Int J Mol Sci 2025;26:4243. [PMID: 40362480 PMCID: PMC12072073 DOI: 10.3390/ijms26094243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2025] [Revised: 04/24/2025] [Accepted: 04/28/2025] [Indexed: 05/15/2025]  Open
135
Rubio-Mora E, Amoroto-Bengoetxea M, Rico Nieto A, Díez-Vidal A, Mingorance J, Quiles-Melero I. Complete genome sequence of a Neisseria meningitidis isolate from an ankle joint with septic arthritis. Microbiol Resour Announc 2025:e0011125. [PMID: 40298420 DOI: 10.1128/mra.00111-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2025] [Accepted: 04/11/2025] [Indexed: 04/30/2025]  Open
136
Zeng Y, Cai Y, Zhou X, Wang S, Li L, Yao Y, Yu J, Liu X, Yang H, Wei T, Dong S, Liu Y. Chromosome-level genomes of Arctic and Antarctic mosses: Aulacomnium turgidum and Polytrichastrum alpinum. Sci Data 2025;12:705. [PMID: 40301385 PMCID: PMC12041281 DOI: 10.1038/s41597-025-04960-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2024] [Accepted: 04/07/2025] [Indexed: 05/01/2025]  Open
137
Radhamanalan G, Mickymaray S, Alothaim AS, Alsowayeh N, Dharumadurai D. Whole-genome analysis of Streptococcus mutans GDP01 isolate of dental caries tooth. Microbiol Resour Announc 2025:e0105724. [PMID: 40298426 DOI: 10.1128/mra.01057-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2024] [Accepted: 04/09/2025] [Indexed: 04/30/2025]  Open
138
Ben Romdhane W, Ben Saad R, Guiderdoni E, Ali AAM, Tarroum M, Al-Doss A, Hassairi A. De novo, high-quality assembly and annotation of the halophyte grass Aeluropus littoralis draft genome and identification of A20/AN1 zinc finger protein family. BMC PLANT BIOLOGY 2025;25:556. [PMID: 40295936 PMCID: PMC12039208 DOI: 10.1186/s12870-025-06610-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2025] [Accepted: 04/24/2025] [Indexed: 04/30/2025]
139
Choudoir MJ, Narayanan A, Rodriguez-Ramos D, Simoes R, Efroni A, Sondrini A, DeAngelis KM. Pangenomes suggest ecological-evolutionary responses to experimental soil warming. mSphere 2025;10:e0005925. [PMID: 40105318 PMCID: PMC12039271 DOI: 10.1128/msphere.00059-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2025] [Accepted: 02/04/2025] [Indexed: 03/20/2025]  Open
140
Aguilar-Ancori EG, Marin-Carrasco M, Campo-Pfuyo LI, Muñiz-Duran JG, Espinoza-Culupú A. Identification of pandemic ST147, ESBL-type β-lactamases, carbapenemases, and virulence factors in Klebsiella pneumoniae isolated from southern Peru. Sci Rep 2025;15:14870. [PMID: 40295561 PMCID: PMC12037762 DOI: 10.1038/s41598-025-97464-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2024] [Accepted: 04/04/2025] [Indexed: 04/30/2025]  Open
141
Záhonová K, Füssy Z, Albanaz ATS, Butenko A, Kachale A, Kraeva N, Galan A, Zakharova A, Stojanova B, Votýpka J, Kostygov AY, Spodareva VV, Malysheva MN, Frolov AO, Rogozin IB, Paris Z, Valášek LS, Yurchenko V, Lukeš J. Comparative genomic analysis of trypanosomatid protists illuminates an extensive change in the nuclear genetic code. mBio 2025:e0088525. [PMID: 40293238 DOI: 10.1128/mbio.00885-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2025] [Accepted: 03/31/2025] [Indexed: 04/30/2025]  Open
142
Mixão V, Pinto M, Brendebach H, Sobral D, Dourado Santos J, Radomski N, Majgaard Uldall AS, Bomba A, Pietsch M, Bucciacchio A, de Ruvo A, Castelli P, Iwan E, Simon S, Coipan CE, Linde J, Petrovska L, Kaas RS, Grimstrup Joensen K, Holtsmark Nielsen S, Kiil K, Lagesen K, Di Pasquale A, Gomes JP, Deneke C, Tausch SH, Borges V. Multi-country and intersectoral assessment of cluster congruence between pipelines for genomics surveillance of foodborne pathogens. Nat Commun 2025;16:3961. [PMID: 40295532 PMCID: PMC12038046 DOI: 10.1038/s41467-025-59246-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2024] [Accepted: 04/15/2025] [Indexed: 04/30/2025]  Open
143
Leung V, Ritchie G, Stefanovic A, Lee C, Chorlton S, Matic N, Romney MG, Hayden A, Lowe CF. An Outbreak of Multidrug-Resistant Shigella flexneri Serotype 2a Among People Experiencing Homelessness in Vancouver. Trop Med Infect Dis 2025;10:120. [PMID: 40423350 DOI: 10.3390/tropicalmed10050120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2025] [Revised: 04/14/2025] [Accepted: 04/23/2025] [Indexed: 05/28/2025]  Open
144
Liang H, Zou Y, Wang M, Hu T, Wang H, He W, Ju Y, Guo R, Chen J, Guo F, Zeng T, Dong Y, Zhang Y, Wang B, Liu C, Jin X, Zhang W, Xu X, Xiao L. Efficiently constructing complete genomes with CycloneSEQ to fill gaps in bacterial draft assemblies. GIGABYTE 2025;2025:gigabyte154. [PMID: 40329937 PMCID: PMC12051259 DOI: 10.46471/gigabyte.154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2024] [Accepted: 04/22/2025] [Indexed: 05/08/2025]  Open
145
Revilla J, Rodríguez-Rodríguez S, Solórzano R, Reyes G, Barja JL. First draft genome sequence of Vibrio rotiferianus isolated from diseased larvae of the spiny rock-scallop Spondylus limbatus during hatchery outbreaks. Microb Pathog 2025;205:107617. [PMID: 40288427 DOI: 10.1016/j.micpath.2025.107617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2024] [Revised: 03/06/2025] [Accepted: 04/17/2025] [Indexed: 04/29/2025]
146
Yang YQ, Li X, Wang ZF, Deng YL, Wang ZZ, Fang XY, Zhang MD, Sun W, Zhao XQ, Liu ZQ, Zhang FL. Whole Genome Sequencing of Kodamaea ohmeri SSK and Its Characterization for Degradation of Inhibitors from Lignocellulosic Biomass. BIOLOGY 2025;14:458. [PMID: 40427648 PMCID: PMC12109290 DOI: 10.3390/biology14050458] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/02/2025] [Revised: 04/11/2025] [Accepted: 04/18/2025] [Indexed: 05/29/2025]
147
Hakimi M, Ye F, Saxena A, Hu X, Shen H, Elankumaran P, Stinman CC, Macedo N, Sahin O, Burrough ER, Li G. Genomic insights into the population structure, antimicrobial resistance, and virulence of Brachyspira hyodysenteriae from diverse geographical regions. Microbiol Spectr 2025:e0338624. [PMID: 40272172 DOI: 10.1128/spectrum.03386-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2025] [Accepted: 04/04/2025] [Indexed: 04/25/2025]  Open
148
Ayoub H, Kumar MS, Mehta R, Sethuraj SE, Thomas P, Dhanze H, Dubey M, Salih HM, Chandrashekaraiah GB, Cull CA, Veeranna RP, Amachawadi RG. Genomic insights into Brucella melitensis in India: stability of ST8 and the role of virulence genes in regional adaptations. Microbiol Spectr 2025:e0264724. [PMID: 40272150 DOI: 10.1128/spectrum.02647-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2024] [Accepted: 03/23/2025] [Indexed: 04/25/2025]  Open
149
Sun Y, Cai Q, Li T, Chen J, Fang Y. Genome assembly of Klebsiella michiganensis based on metagenomic next-generation sequencing reveals its genomic characteristics in population genetics and molecular epidemiology. Front Microbiol 2025;16:1546594. [PMID: 40342595 PMCID: PMC12058774 DOI: 10.3389/fmicb.2025.1546594] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2024] [Accepted: 04/02/2025] [Indexed: 05/11/2025]  Open
150
Alnaimat SM, Abushattal S, Dmour SM, Al-Awaida WJ, Ayyash AM, Goh KW. Genomic insights into the taxonomic status and bioactive gene cluster profiling of Bacillus velezensis RVMD2 isolated from desert rock varnish in Ma'an, Jordan. PLoS One 2025;20:e0319345. [PMID: 40273114 PMCID: PMC12021177 DOI: 10.1371/journal.pone.0319345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2024] [Accepted: 01/30/2025] [Indexed: 04/26/2025]  Open
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