201
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Abscisic Acid: Hidden Architect of Root System Structure. PLANTS 2015; 4:548-72. [PMID: 27135341 PMCID: PMC4844405 DOI: 10.3390/plants4030548] [Citation(s) in RCA: 84] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/06/2015] [Revised: 08/01/2015] [Accepted: 08/03/2015] [Indexed: 01/15/2023]
Abstract
Plants modulate root growth in response to changes in the local environment, guided by intrinsic developmental genetic programs. The hormone Abscisic Acid (ABA) mediates responses to different environmental factors, such as the presence of nitrate in the soil, water stress and salt, shaping the structure of the root system by regulating the production of lateral roots as well as controlling root elongation by modulating cell division and elongation. Curiously, ABA controls different aspects of root architecture in different plant species, perhaps providing some insight into the great diversity of root architecture in different plants, both from different taxa and from different environments. ABA is an ancient signaling pathway, acquired well before the diversification of land plants. Nonetheless, how this ancient signaling module is implemented or interacts within a larger signaling network appears to vary in different species. This review will examine the role of ABA in the control of root architecture, focusing on the regulation of lateral root formation in three plant species, Arabidopsis thaliana, Medicago truncatula and Oryza sativa. We will consider how the implementation of the ABA signaling module might be a target of natural selection, to help contribute to the diversity of root architecture in nature.
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202
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Czyzewicz N, Shi CL, Vu LD, Van De Cotte B, Hodgman C, Butenko MA, De Smet I. Modulation of Arabidopsis and monocot root architecture by CLAVATA3/EMBRYO SURROUNDING REGION 26 peptide. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:5229-43. [PMID: 26188203 PMCID: PMC4526925 DOI: 10.1093/jxb/erv360] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Plant roots are important for a wide range of processes, including nutrient and water uptake, anchoring and mechanical support, storage functions, and as the major interface with the soil environment. Several small signalling peptides and receptor kinases have been shown to affect primary root growth, but very little is known about their role in lateral root development. In this context, the CLE family, a group of small signalling peptides that has been shown to affect a wide range of developmental processes, were the focus of this study. Here, the expression pattern during lateral root initiation for several CLE family members is explored and to what extent CLE1, CLE4, CLE7, CLE26, and CLE27, which show specific expression patterns in the root, are involved in regulating root architecture in Arabidopsis thaliana is assessed. Using chemically synthesized peptide variants, it was found that CLE26 plays an important role in regulating A. thaliana root architecture and interacts with auxin signalling. In addition, through alanine scanning and in silico structural modelling, key residues in the CLE26 peptide sequence that affect its activity are pinpointed. Finally, some interesting similarities and differences regarding the role of CLE26 in regulating monocot root architecture are presented.
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Affiliation(s)
- Nathan Czyzewicz
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Leicestershire LE12 5RD, UK
| | - Chun-Lin Shi
- Department of Biosciences, Section for Genetics and Evolutionary Biology, University of Oslo, N-0316 Oslo, Norway
| | - Lam Dai Vu
- Department of Plant Systems Biology, VIB, B-9052 Ghent, Belgium Department of Plant Biotechnology and Genetics, Ghent University, B-9052 Ghent, Belgium Department of Medical Protein Research, VIB, B-9000 Ghent, Belgium Department of Biochemistry, Ghent University, B-9000 Ghent, Belgium
| | - Brigitte Van De Cotte
- Department of Plant Systems Biology, VIB, B-9052 Ghent, Belgium Department of Plant Biotechnology and Genetics, Ghent University, B-9052 Ghent, Belgium
| | - Charlie Hodgman
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, Leicestershire LE12 5RD, UK
| | - Melinka A Butenko
- Department of Biosciences, Section for Genetics and Evolutionary Biology, University of Oslo, N-0316 Oslo, Norway
| | - Ive De Smet
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Leicestershire LE12 5RD, UK Department of Plant Systems Biology, VIB, B-9052 Ghent, Belgium Department of Plant Biotechnology and Genetics, Ghent University, B-9052 Ghent, Belgium Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, Leicestershire LE12 5RD, UK
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203
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Velasquez SM, Dinneny JR, Estevez JM. Live imaging of root hairs. Methods Mol Biol 2015; 1242:59-66. [PMID: 25408443 DOI: 10.1007/978-1-4939-1902-4_5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Root hairs are single cells specialized in the absorption of water and nutrients. Growing root hairs requires intensive cell wall changes to accommodate cell expansion at the apical end by a process known as tip growth. The cell wall of plants is a very rigid structure comprised largely of polysaccharides and hydroxyproline-rich O-glycoproteins. The importance of root hairs stems from their capacity to expand the surface of interaction between the root and the environment, in search for the necessary nutrients and water to allow plant growth. Therefore, it becomes crucial to deepen our knowledge of them, particularly in the light of the applicability in agriculture by allowing the expansion of croplands. Root hair growth is an extremely fast process, reaching growth rates of up to 1 μm/min and it also is a dynamic process; there can be situations in which the final length might not be affected but the growth rate is. Consequently, in this chapter we focus on a method for studying growth dynamics and rates during a time course. This method is versatile allowing for it to be used in other plant organs such as lateral root, hypocotyl, etc., and also in various conditions.
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Affiliation(s)
- Silvia M Velasquez
- Instituto de Fisiología, Biología Molecular y Neurociencias (IFIBYNE-CONICET), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina
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204
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Xia XJ, Zhou YH, Shi K, Zhou J, Foyer CH, Yu JQ. Interplay between reactive oxygen species and hormones in the control of plant development and stress tolerance. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:2839-56. [PMID: 25788732 DOI: 10.1093/jxb/erv089] [Citation(s) in RCA: 346] [Impact Index Per Article: 38.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
As a consequence of a sessile lifestyle, plants are continuously exposed to changing environmental conditions and often life-threatening stresses caused by exposure to excessive light, extremes of temperature, limiting nutrient or water availability, and pathogen/insect attack. The flexible coordination of plant growth and development is necessary to optimize vigour and fitness in a changing environment through rapid and appropriate responses to such stresses. The concept that reactive oxygen species (ROS) are versatile signalling molecules in plants that contribute to stress acclimation is well established. This review provides an overview of our current knowledge of how ROS production and signalling are integrated with the action of auxin, brassinosteroids, gibberellins, abscisic acid, ethylene, strigolactones, salicylic acid, and jasmonic acid in the coordinate regulation of plant growth and stress tolerance. We consider the local and systemic crosstalk between ROS and hormonal signalling pathways and identify multiple points of reciprocal control, as well as providing insights into the integration nodes that involve Ca(2+)-dependent processes and mitogen-activated protein kinase phosphorylation cascades.
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Affiliation(s)
- Xiao-Jian Xia
- Department of Horticulture, Zijingang Campus, Zhejiang University, Yuhangtang Road 866, Hangzhou, 310058, PR China Key Laboratory of Horticultural Plants Growth, Development and Quality Improvement, Agricultural Ministry of China, Yuhangtang Road 866, Hangzhou, 310058, PR China
| | - Yan-Hong Zhou
- Department of Horticulture, Zijingang Campus, Zhejiang University, Yuhangtang Road 866, Hangzhou, 310058, PR China
| | - Kai Shi
- Department of Horticulture, Zijingang Campus, Zhejiang University, Yuhangtang Road 866, Hangzhou, 310058, PR China
| | - Jie Zhou
- Department of Horticulture, Zijingang Campus, Zhejiang University, Yuhangtang Road 866, Hangzhou, 310058, PR China
| | - Christine H Foyer
- Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Jing-Quan Yu
- Department of Horticulture, Zijingang Campus, Zhejiang University, Yuhangtang Road 866, Hangzhou, 310058, PR China Key Laboratory of Horticultural Plants Growth, Development and Quality Improvement, Agricultural Ministry of China, Yuhangtang Road 866, Hangzhou, 310058, PR China
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205
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Gupta A, Singh M, Laxmi A. Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis. PLANT PHYSIOLOGY 2015; 168:307-20. [PMID: 25810094 PMCID: PMC4424020 DOI: 10.1104/pp.114.256313] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2014] [Accepted: 03/19/2015] [Indexed: 05/04/2023]
Abstract
Glucose (Glc) plays a fundamental role in regulating lateral root (LR) development as well as LR emergence. In this study, we show that brassinosteroid (BR) signaling works downstream of Glc in controlling LR production/emergence in Arabidopsis (Arabidopsis thaliana) seedlings. Glc and BR can promote LR emergence at lower concentrations, while at higher concentrations, both have an inhibitory effect. The BR biosynthesis and perception mutants showed highly reduced numbers of emerged LRs at all the Glc concentrations tested. BR signaling works downstream of Glc signaling in regulating LR production, as in the glucose insensitive2-1brassinosteroid insensitive1 double mutant, Glc-induced LR production/emergence was severely reduced. Differential auxin distribution via the influx carriers AUXIN RESISTANT1/LIKE AUXIN RESISTANT1-3 and the efflux carrier PIN-FORMED2 plays a central role in controlling LR production in response to Glc and BR. Auxin signaling components AUXIN RESISTANT2,3 and SOLITARY ROOT act downstream of Glc and BR. AUXIN RESPONSE FACTOR7/19 work farther downstream and control LR production by regulating the expression of LATERAL ORGAN BOUNDARIES-DOMAIN29 and EXPANSIN17 genes. Increasing light flux could also mimic the Glc effect on LR production/emergence. However, increased light flux could not affect LR production in those BR and auxin signaling mutants that were defective for Glc-induced LR production. Altogether, our study suggests that, under natural environmental conditions, modulation of endogenous sugar levels can manipulate root architecture for optimized development by altering its nutrient/water uptake as well as its anchorage capacity.
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Affiliation(s)
- Aditi Gupta
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India
| | - Manjul Singh
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India
| | - Ashverya Laxmi
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India
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206
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García-Sánchez S, Bernales I, Cristobal S. Early response to nanoparticles in the Arabidopsis transcriptome compromises plant defence and root-hair development through salicylic acid signalling. BMC Genomics 2015; 16:341. [PMID: 25903678 PMCID: PMC4417227 DOI: 10.1186/s12864-015-1530-4] [Citation(s) in RCA: 78] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2014] [Accepted: 04/13/2015] [Indexed: 12/01/2022] Open
Abstract
Background The impact of nano-scaled materials on photosynthetic organisms needs to be evaluated. Plants represent the largest interface between the environment and biosphere, so understanding how nanoparticles affect them is especially relevant for environmental assessments. Nanotoxicology studies in plants allude to quantum size effects and other properties specific of the nano-stage to explain increased toxicity respect to bulk compounds. However, gene expression profiles after exposure to nanoparticles and other sources of environmental stress have not been compared and the impact on plant defence has not been analysed. Results Arabidopsis plants were exposed to TiO2-nanoparticles, Ag-nanoparticles, and multi-walled carbon nanotubes as well as different sources of biotic (microbial pathogens) or abiotic (saline, drought, or wounding) stresses. Changes in gene expression profiles and plant phenotypic responses were evaluated. Transcriptome analysis shows similarity of expression patterns for all plants exposed to nanoparticles and a low impact on gene expression compared to other stress inducers. Nanoparticle exposure repressed transcriptional responses to microbial pathogens, resulting in increased bacterial colonization during an experimental infection. Inhibition of root hair development and transcriptional patterns characteristic of phosphate starvation response were also observed. The exogenous addition of salicylic acid prevented some nano-specific transcriptional and phenotypic effects, including the reduction in root hair formation and the colonization of distal leaves by bacteria. Conclusions This study integrates the effect of nanoparticles on gene expression with plant responses to major sources of environmental stress and paves the way to remediate the impact of these potentially damaging compounds through hormonal priming. Electronic supplementary material The online version of this article (doi:10.1186/s12864-015-1530-4) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Susana García-Sánchez
- Department of Physiology, Faculty of Medicine and Dentistry, University of the Basque Country UPV/EHU, Leioa, Spain.
| | - Irantzu Bernales
- Gene Expression Unit, Genomics Facility of General Research Services (SGIker), Faculty of Science and Technology, University of the Basque Country UPV/EHU, Leioa, Spain.
| | - Susana Cristobal
- IKERBASQUE, Basque Country Foundation for Science. Department of Physiology, Faculty of Medicine and Dentistry, University of the Basque Country UPV/EHU, Leioa, Spain. .,Department of Clinical and Experimental Medicine, Health Science Faculty, Linköping University, Linköping, Sweden.
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207
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Karve R, Iyer-Pascuzzi AS. Digging deeper: high-resolution genome-scale data yields new insights into root biology. CURRENT OPINION IN PLANT BIOLOGY 2015; 24:24-30. [PMID: 25636037 DOI: 10.1016/j.pbi.2015.01.007] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2014] [Revised: 01/13/2015] [Accepted: 01/14/2015] [Indexed: 05/14/2023]
Abstract
Development in multicellular organisms is the result of designated cellular programs occurring at specific points in time and space. The root is an excellent model to address how spatio-temporal complexity impacts organ development. High-resolution 'omic' approaches have delineated the transcriptional, proteomic, metabolomic, and small RNA profiles of multiple cell types in the Arabidopsis root. Similar approaches have shed light on root cell-type specific transcriptional programs in rice and soybean. These data are being used to identify specific spatio-temporal mechanisms of root development, dissect regulatory networks that control cell identity, and understand hormone responses in the root. Computational modeling of these data combined with new advances in imaging technologies is generating new biological insights into root growth and development.
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Affiliation(s)
- Rucha Karve
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, United States
| | - Anjali S Iyer-Pascuzzi
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, United States.
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208
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Hamamoto S, Horie T, Hauser F, Deinlein U, Schroeder JI, Uozumi N. HKT transporters mediate salt stress resistance in plants: from structure and function to the field. Curr Opin Biotechnol 2015; 32:113-120. [DOI: 10.1016/j.copbio.2014.11.025] [Citation(s) in RCA: 110] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2014] [Accepted: 11/28/2014] [Indexed: 10/24/2022]
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209
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Robbins NE, Dinneny JR. The divining root: moisture-driven responses of roots at the micro- and macro-scale. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:2145-54. [PMID: 25617469 PMCID: PMC4817643 DOI: 10.1093/jxb/eru496] [Citation(s) in RCA: 56] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Water is fundamental to plant life, but the mechanisms by which plant roots sense and respond to variations in water availability in the soil are poorly understood. Many studies of responses to water deficit have focused on large-scale effects of this stress, but have overlooked responses at the sub-organ or cellular level that give rise to emergent whole-plant phenotypes. We have recently discovered hydropatterning, an adaptive environmental response in which roots position new lateral branches according to the spatial distribution of available water across the circumferential axis. This discovery illustrates that roots are capable of sensing and responding to water availability at spatial scales far lower than those normally studied for such processes. This review will explore how roots respond to water availability with an emphasis on what is currently known at different spatial scales. Beginning at the micro-scale, there is a discussion of water physiology at the cellular level and proposed sensory mechanisms cells use to detect osmotic status. The implications of these principles are then explored in the context of cell and organ growth under non-stress and water-deficit conditions. Following this, several adaptive responses employed by roots to tailor their functionality to the local moisture environment are discussed, including patterning of lateral root development and generation of hydraulic barriers to limit water loss. We speculate that these micro-scale responses are necessary for optimal functionality of the root system in a heterogeneous moisture environment, allowing for efficient water uptake with minimal water loss during periods of drought.
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Affiliation(s)
- Neil E Robbins
- Carnegie Institution for Science, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA Department of Biology, Stanford University, 371 Serra Mall, Stanford, CA 94305, USA
| | - José R Dinneny
- Carnegie Institution for Science, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA
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210
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Robbins NE, Dinneny JR. The divining root: moisture-driven responses of roots at the micro- and macro-scale. JOURNAL OF EXPERIMENTAL BOTANY 2015. [PMID: 25617469 DOI: 10.1093/jxb/eru49496] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Water is fundamental to plant life, but the mechanisms by which plant roots sense and respond to variations in water availability in the soil are poorly understood. Many studies of responses to water deficit have focused on large-scale effects of this stress, but have overlooked responses at the sub-organ or cellular level that give rise to emergent whole-plant phenotypes. We have recently discovered hydropatterning, an adaptive environmental response in which roots position new lateral branches according to the spatial distribution of available water across the circumferential axis. This discovery illustrates that roots are capable of sensing and responding to water availability at spatial scales far lower than those normally studied for such processes. This review will explore how roots respond to water availability with an emphasis on what is currently known at different spatial scales. Beginning at the micro-scale, there is a discussion of water physiology at the cellular level and proposed sensory mechanisms cells use to detect osmotic status. The implications of these principles are then explored in the context of cell and organ growth under non-stress and water-deficit conditions. Following this, several adaptive responses employed by roots to tailor their functionality to the local moisture environment are discussed, including patterning of lateral root development and generation of hydraulic barriers to limit water loss. We speculate that these micro-scale responses are necessary for optimal functionality of the root system in a heterogeneous moisture environment, allowing for efficient water uptake with minimal water loss during periods of drought.
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Affiliation(s)
- Neil E Robbins
- Carnegie Institution for Science, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA Department of Biology, Stanford University, 371 Serra Mall, Stanford, CA 94305, USA
| | - José R Dinneny
- Carnegie Institution for Science, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA
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211
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Reitz MU, Gifford ML, Schäfer P. Hormone activities and the cell cycle machinery in immunity-triggered growth inhibition. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:2187-97. [PMID: 25821072 PMCID: PMC4986725 DOI: 10.1093/jxb/erv106] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2014] [Revised: 02/09/2015] [Accepted: 02/19/2015] [Indexed: 05/27/2023]
Abstract
Biotic stress and diseases caused by pathogen attack pose threats in crop production and significantly reduce crop yields. Enhancing immunity against pathogens is therefore of outstanding importance in crop breeding. However, this must be balanced, as immune activation inhibits plant growth. This immunity-coupled growth trade-off does not support resistance but is postulated to reflect the reallocation of resources to drive immunity. There is, however, increasing evidence that growth-immunity trade-offs are based on the reconfiguration of hormone pathways, shared by growth and immunity signalling. Studies in roots revealed the role of hormones in orchestrating growth across different cell types, with some hormones showing a defined cell type-specific activity. This is apparently highly relevant for the regulation of the cell cycle machinery and might be part of the growth-immunity cross-talk. Since plants are constantly exposed to Immuno-activating microbes under agricultural conditions, the transition from a growth to an immunity operating mode can significantly reduce crop yield and can conflict our efforts to generate next-generation crops with improved yield under climate change conditions. By focusing on roots, we outline the current knowledge of hormone signalling on the cell cycle machinery to explain growth trade-offs induced by immunity. By referring to abiotic stress studies, we further introduce how root cell type-specific hormone activities might contribute to growth under immunity and discuss the feasibility of uncoupling the growth-immunity cross-talk.
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Affiliation(s)
- M U Reitz
- School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK
| | - M L Gifford
- School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK
| | - P Schäfer
- School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK
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212
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Zhang M, Kong X, Xu X, Li C, Tian H, Ding Z. Comparative transcriptome profiling of the maize primary, crown and seminal root in response to salinity stress. PLoS One 2015; 10:e0121222. [PMID: 25803026 PMCID: PMC4372355 DOI: 10.1371/journal.pone.0121222] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2014] [Accepted: 01/29/2015] [Indexed: 12/14/2022] Open
Abstract
Soil salinity is a major constraint to crop growth and yield. The primary and lateral roots of Arabidopsis thaliana are known to respond differentially to a number of environmental stresses, including salinity. Although the maize root system as a whole is known to be sensitive to salinity, whether or not different structural root systems show differential growth responses to salinity stress has not yet been investigated. The maize primary root (PR) was more tolerant of salinity stress than either the crown root (CR) or the seminal root (SR). To understand the molecular mechanism of these differential growth responses, RNA-Seq analysis was conducted on cDNA prepared from the PR, CR and SR of plants either non-stressed or exposed to 100 mM NaCl for 24 h. A set of 444 genes were shown to be regulated by salinity stress, and the transcription pattern of a number of genes associated with the plant salinity stress response differed markedly between the various types of root. The pattern of transcription of the salinity-regulated genes was shown to be very diverse in the various root types. The differential transcription of these genes such as transcription factors, and the accumulation of compatible solutes such as soluble sugars probably underlie the differential growth responses to salinity stress of the three types of roots in maize.
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Affiliation(s)
- Maolin Zhang
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, College of Life Sciences, Shandong University, Jinan, 250100, Shandong, China
| | - Xiangpei Kong
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, College of Life Sciences, Shandong University, Jinan, 250100, Shandong, China
| | - Xiangbo Xu
- Maize Institute, Shandong Academy of Agricultural Sciences/National Maize Improvement Sub-Center/National Engineering Laboratory for Wheat and Maize, Jinan, 250000, Shandong, China
| | - Cuiling Li
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, College of Life Sciences, Shandong University, Jinan, 250100, Shandong, China
| | - Huiyu Tian
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, College of Life Sciences, Shandong University, Jinan, 250100, Shandong, China
| | - Zhaojun Ding
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, College of Life Sciences, Shandong University, Jinan, 250100, Shandong, China
- * E-mail:
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213
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Qian ZJ, Song JJ, Chaumont F, Ye Q. Differential responses of plasma membrane aquaporins in mediating water transport of cucumber seedlings under osmotic and salt stresses. PLANT, CELL & ENVIRONMENT 2015; 38:461-73. [PMID: 24601940 DOI: 10.1111/pce.12319] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2013] [Revised: 02/28/2014] [Accepted: 03/03/2014] [Indexed: 05/09/2023]
Abstract
It has long been recognized that inhibition of plant water transport by either osmotic stress or salinity is mediated by aquaporins (AQPs), but the function and regulation of AQPs are highly variable among distinct isoforms and across different species. In this study, cucumber seedlings were subjected to polyethylene glycol (PEG) or NaCl stress for duration of 2 h or 24 h. The 2 h treatment with PEG or NaCl had non-significant effect on the expression of plasma membrane AQP (CsPIPs) in roots, indicating the decrease in hydraulic conductivity of roots (Lpr ) and root cells (Lprc ) measured in these conditions were due to changes in AQP activity. After both 2 h and 24 h PEG or NaCl exposure, the decrease in hydraulic conductivity of leaves (Kleaf ) and leaf cells (Lplc ) could be attributed to a down-regulation of the two most highly expressed isoforms, CsPIP1;2 and CsPIP2;4. In roots, both Lpr and Lprc were further reduced after 24 h PEG exposure, but partially recovered after 24 h NaCl treatment, which were consistent with changes in the expression of CsPIP genes. Overall, the results demonstrated differential responses of CsPIPs in mediating water transport of cucumber seedlings, and the regulatory mechanisms differed according to applied stresses, stress durations and specific organs.
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Affiliation(s)
- Zheng-Jiang Qian
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, Guangdong, 510650, China; University of Chinese Academy of Sciences, Beijing, 100049, China
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214
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Dinneny JR. Traversing organizational scales in plant salt-stress responses. CURRENT OPINION IN PLANT BIOLOGY 2015; 23:70-5. [PMID: 25449729 DOI: 10.1016/j.pbi.2014.10.009] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2014] [Revised: 10/15/2014] [Accepted: 10/17/2014] [Indexed: 05/07/2023]
Abstract
Modern society has developed in large part due to our ability to reliably grow plants for food and renewable resources. Predicted increases in environmental variability will impact agricultural productivity and may have extensive secondary effects on the stability of our society. Thus, a concerted effort to understand plant response strategies to stress is needed. High salinity is an agriculturally important environmental stress and generates complex effects on the physiology of the plant. The abiotic-stress-associated hormone, abscisic acid (ABA), mediates a major component of this response. I highlight recent work studying salt-stress responses at different spatial and organizational scales from the action of ABA in specific cell types to global networks of proteins that predict critical regulatory events during acclimation.
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215
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Duan L, Sebastian J, Dinneny JR. Salt-stress regulation of root system growth and architecture in Arabidopsis seedlings. Methods Mol Biol 2015; 1242:105-22. [PMID: 25408448 DOI: 10.1007/978-1-4939-1902-4_10] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2023]
Abstract
In order to acclimate to the soil environment, plants need to constantly optimize their root system architecture for efficient resource uptake. Roots are highly sensitive to changes in their surrounding environment and root system responses to a stress such as salinity and drought can be very dynamic and complex in nature. These responses can be manifested differentially at the cellular, tissue, or organ level and between the types of roots in a root system. Therefore, various approaches must be taken to quantify and characterize these responses. In this chapter, we review methods to study basic root growth traits, such as root length, cell cycle activity and meristem size, cell shape and size that form the basis for the emergent properties of the root system. Methods for the detailed analysis of lateral root initiation and postemergence growth are described. Finally, several live-imaging systems, which allow for dynamic imaging of the root, will be explored. Together these tools provide insight into the regulatory steps that sculpt the root system upon environmental change and can be used as the basis for the evaluation of genetic variation affecting these pathways.
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Affiliation(s)
- Lina Duan
- Department of Plant Biology, Carnegie Institution for Science, 260 Panama St., Stanford, CA, 94305, USA,
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216
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Singh M, Gupta A, Laxmi A. Ethylene acts as a negative regulator of glucose induced lateral root emergence in Arabidopsis. PLANT SIGNALING & BEHAVIOR 2015; 10:e1058460. [PMID: 26236960 PMCID: PMC4883975 DOI: 10.1080/15592324.2015.1058460] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Plants, being sessile organisms, are more exposed to the hazards of constantly changing environmental conditions globally. During the lifetime of a plant, the root system encounters various challenges such as obstacles, pathogens, high salinity, water logging, nutrient scarcity etc. The developmental plasticity of the root system provides brilliant adaptability to plants to counter the changes exerted by both external as well as internal cues and achieve an optimized growth status. Phytohormones are one of the major intrinsic factors regulating all aspects of plant growth and development both independently as well as through complex signal integrations at multiple levels. We have previously shown that glucose (Glc) and brassinosteroid (BR) signalings interact extensively to regulate lateral root (LR) development in Arabidopsis. (1) Auxin efflux as well as influx and downstream signaling components are also involved in Glc-BR regulation of LR emergence. Here, we provide evidence for involvement of ethylene signaling machinery downstream to Glc and BR in regulation of LR emergence.
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Affiliation(s)
- Manjul Singh
- National Institute of Plant Genome Research; Aruna Asaf Ali Marg; New Delhi, India
| | - Aditi Gupta
- National Institute of Plant Genome Research; Aruna Asaf Ali Marg; New Delhi, India
| | - Ashverya Laxmi
- National Institute of Plant Genome Research; Aruna Asaf Ali Marg; New Delhi, India
- Correspondence to: Ashverya Laxmi; E-mail:
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217
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Li B, Ning L, Zhang J, Bao M, Zhang W. Transcriptional profiling of Petunia seedlings reveals candidate regulators of the cold stress response. FRONTIERS IN PLANT SCIENCE 2015; 6:118. [PMID: 25784921 PMCID: PMC4345802 DOI: 10.3389/fpls.2015.00118] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2014] [Accepted: 02/12/2015] [Indexed: 05/05/2023]
Abstract
Petunias are important ornamentals with the capacity for cold acclimation. So far, there is limited information concerning gene regulation and signaling pathways associated with the cold stress response in petunias. A custom-designed petunia microarray representing 24816 genes was used to perform transcriptome profiling in petunia seedlings subjected to cold at 2°C for 0.5 h, 2 h, 24 h, and 5 d. A total of 2071 transcripts displayed differential expression patterns under cold stress, of which 1149 were up-regulated and 922 were down-regulated. Gene ontology enrichment analysis demarcated related biological processes, suggesting a possible link between flavonoid metabolism and plant adaptation to low temperatures. Many novel stress-responsive regulators were revealed, suggesting that diverse regulatory pathways may exist in petunias in addition to the well-characterized CBF pathway. The expression changes of selected genes under cold and other abiotic stress conditions were confirmed by real-time RT-PCR. Furthermore, weighted gene co-expression network analysis divided the petunia genes on the array into 65 modules that showed high co-expression and identified stress-specific hub genes with high connectivity. Our identification of these transcriptional responses and groups of differentially expressed regulators will facilitate the functional dissection of the molecular mechanism in petunias responding to environment stresses and extend our ability to improve cold tolerance in plants.
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Affiliation(s)
| | | | | | | | - Wei Zhang
- *Correspondence: Wei Zhang, Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, No.1, Shizishan Street, Hongshan District, Wuhan 430070 Hubei, China e-mail:
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218
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Rodriguez L, Gonzalez-Guzman M, Diaz M, Rodrigues A, Izquierdo-Garcia AC, Peirats-Llobet M, Fernandez MA, Antoni R, Fernandez D, Marquez JA, Mulet JM, Albert A, Rodriguez PL. C2-domain abscisic acid-related proteins mediate the interaction of PYR/PYL/RCAR abscisic acid receptors with the plasma membrane and regulate abscisic acid sensitivity in Arabidopsis. THE PLANT CELL 2014; 26:4802-20. [PMID: 25465408 PMCID: PMC4311195 DOI: 10.1105/tpc.114.129973] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2014] [Revised: 11/01/2014] [Accepted: 11/14/2014] [Indexed: 05/18/2023]
Abstract
Membrane-delimited abscisic acid (ABA) signal transduction plays a critical role in early ABA signaling, but the molecular mechanisms linking core signaling components to the plasma membrane are unclear. We show that transient calcium-dependent interactions of PYR/PYL ABA receptors with membranes are mediated through a 10-member family of C2-domain ABA-related (CAR) proteins in Arabidopsis thaliana. Specifically, we found that PYL4 interacted in an ABA-independent manner with CAR1 in both the plasma membrane and nucleus of plant cells. CAR1 belongs to a plant-specific gene family encoding CAR1 to CAR10 proteins, and bimolecular fluorescence complementation and coimmunoprecipitation assays showed that PYL4-CAR1 as well as other PYR/PYL-CAR pairs interacted in plant cells. The crystal structure of CAR4 was solved, which revealed that, in addition to a classical calcium-dependent lipid binding C2 domain, a specific CAR signature is likely responsible for the interaction with PYR/PYL receptors and their recruitment to phospholipid vesicles. This interaction is relevant for PYR/PYL function and ABA signaling, since different car triple mutants affected in CAR1, CAR4, CAR5, and CAR9 genes showed reduced sensitivity to ABA in seedling establishment and root growth assays. In summary, we identified PYR/PYL-interacting partners that mediate a transient Ca(2+)-dependent interaction with phospholipid vesicles, which affects PYR/PYL subcellular localization and positively regulates ABA signaling.
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Affiliation(s)
- Lesia Rodriguez
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
| | - Miguel Gonzalez-Guzman
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
| | - Maira Diaz
- Instituto de Química Física Rocasolano, Consejo Superior de Investigaciones Científicas, ES-28006 Madrid, Spain
| | - Americo Rodrigues
- Instituto Politécnico de Leiria, Escola Superior de Turismo e Tecnologia do Mar, 2411-901 Peniche, Portugal
| | - Ana C Izquierdo-Garcia
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
| | - Marta Peirats-Llobet
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
| | - Maria A Fernandez
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
| | - Regina Antoni
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
| | - Daniel Fernandez
- European Molecular Biology Laboratory, Grenoble Outstation and Unit of Virus Host-Cell Interactions, UJF-EMBL-CNRS, 38042 Grenoble Cedex 9, France
| | - Jose A Marquez
- European Molecular Biology Laboratory, Grenoble Outstation and Unit of Virus Host-Cell Interactions, UJF-EMBL-CNRS, 38042 Grenoble Cedex 9, France
| | - Jose M Mulet
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
| | - Armando Albert
- Instituto de Química Física Rocasolano, Consejo Superior de Investigaciones Científicas, ES-28006 Madrid, Spain
| | - Pedro L Rodriguez
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
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219
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Hyun TK, van der Graaff E, Albacete A, Eom SH, Großkinsky DK, Böhm H, Janschek U, Rim Y, Ali WW, Kim SY, Roitsch T. The Arabidopsis PLAT domain protein1 is critically involved in abiotic stress tolerance. PLoS One 2014; 9:e112946. [PMID: 25396746 PMCID: PMC4232524 DOI: 10.1371/journal.pone.0112946] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2014] [Accepted: 10/17/2014] [Indexed: 11/19/2022] Open
Abstract
Despite the completion of the Arabidopsis genome sequence, for only a relatively low percentage of the encoded proteins experimental evidence concerning their function is available. Plant proteins that harbour a single PLAT (Polycystin, Lipoxygenase, Alpha-toxin and Triacylglycerol lipase) domain and belong to the PLAT-plant-stress protein family are ubiquitously present in monocot and dicots. However, the function of PLAT-plant-stress proteins is still poorly understood. Therefore, we have assessed the function of the uncharacterised Arabidopsis PLAT-plant-stress family members through a combination of functional genetic and physiological approaches. PLAT1 overexpression conferred increased abiotic stress tolerance, including cold, drought and salt stress, while loss-of-function resulted in opposite effects on abiotic stress tolerance. Strikingly, PLAT1 promoted growth under non-stressed conditions. Abiotic stress treatments induced PLAT1 expression and caused expansion of its expression domain. The ABF/ABRE transcription factors, which are positive mediators of abscisic acid signalling, activate PLAT1 promoter activity in transactivation assays and directly bind to the ABRE elements located in this promoter in electrophoretic mobility shift assays. This suggests that PLAT1 represents a novel downstream target of the abscisic acid signalling pathway. Thus, we showed that PLAT1 critically functions as positive regulator of abiotic stress tolerance, but also is involved in regulating plant growth, and thereby assigned a function to this previously uncharacterised PLAT domain protein. The functional data obtained for PLAT1 support that PLAT-plant-stress proteins in general could be promising targets for improving abiotic stress tolerance without yield penalty.
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Affiliation(s)
- Tae Kyung Hyun
- Institute of Plant Sciences, University of Graz, Graz, Austria
- Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, Korea
| | - Eric van der Graaff
- Institute of Plant Sciences, University of Graz, Graz, Austria
- Department of Plant and Environmental Sciences, Copenhagen Plant Science Centre, University of Copenhagen, Taastrup, Denmark
| | - Alfonso Albacete
- Institute of Plant Sciences, University of Graz, Graz, Austria
- Departamento de Nutrición Vegetal, CEBAS-CSIC, Campus Espinardo, Murcia, Spain
| | - Seung Hee Eom
- Institute of Plant Sciences, University of Graz, Graz, Austria
- Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, Korea
| | - Dominik K. Großkinsky
- Institute of Plant Sciences, University of Graz, Graz, Austria
- Department of Plant and Environmental Sciences, Copenhagen Plant Science Centre, University of Copenhagen, Taastrup, Denmark
| | - Hannah Böhm
- Institute of Plant Sciences, University of Graz, Graz, Austria
| | - Ursula Janschek
- Institute of Plant Sciences, University of Graz, Graz, Austria
| | - Yeonggil Rim
- Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, Korea
| | - Walid Wahid Ali
- Department of Pharmaceutical Biology, University of Würzburg, Würzburg, Germany
| | - Soo Young Kim
- Department of Molecular Biotechnology and Kumho Life Science Laboratory, College of Agriculture and Life Sciences, Chonnam National University, Gwangju, Korea
| | - Thomas Roitsch
- Institute of Plant Sciences, University of Graz, Graz, Austria
- Department of Plant and Environmental Sciences, Copenhagen Plant Science Centre, University of Copenhagen, Taastrup, Denmark
- Global Change Research Centre, CzechGlobe AS CR, v.v.i., Drásov, Czech Republic
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220
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Kong X, Zhang M, De Smet I, Ding Z. Designer crops: optimal root system architecture for nutrient acquisition. Trends Biotechnol 2014; 32:597-8. [PMID: 25450041 DOI: 10.1016/j.tibtech.2014.09.008] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2014] [Revised: 09/09/2014] [Accepted: 09/25/2014] [Indexed: 11/27/2022]
Abstract
Plant root systems are highly plastic in response to environmental stimuli. Improved nutrient acquisition can increase fertilizer use efficiency and is critical for crop production. Recent analyses of field-grown crops highlighted the importance of root system architecture (RSA) in nutrient acquisition. This indicated that it is feasible in practice to exploit genotypes or mutations giving rise to optimal RSA for crop design in the future, especially with respect to plant breeding for infertile soils.
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Affiliation(s)
- Xiangpei Kong
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, College of Life Sciences, Shandong University, Jinan, 250100, Shandong, China
| | - Maolin Zhang
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, College of Life Sciences, Shandong University, Jinan, 250100, Shandong, China
| | - Ive De Smet
- Department of Plant Systems Biology, Vlaams Instituut voor Biotechnologie (VIB), Technologiepark 927, B-9052 Ghent, Belgium; Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium; Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough, Leicestershire LE12 5RD, UK
| | - Zhaojun Ding
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, College of Life Sciences, Shandong University, Jinan, 250100, Shandong, China.
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221
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Julkowska MM, Hoefsloot HCJ, Mol S, Feron R, de Boer GJ, Haring MA, Testerink C. Capturing Arabidopsis root architecture dynamics with ROOT-FIT reveals diversity in responses to salinity. PLANT PHYSIOLOGY 2014; 166:1387-402. [PMID: 25271266 PMCID: PMC4226346 DOI: 10.1104/pp.114.248963] [Citation(s) in RCA: 90] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2014] [Accepted: 09/30/2014] [Indexed: 05/18/2023]
Abstract
The plant root is the first organ to encounter salinity stress, but the effect of salinity on root system architecture (RSA) remains elusive. Both the reduction in main root (MR) elongation and the redistribution of the root mass between MRs and lateral roots (LRs) are likely to play crucial roles in water extraction efficiency and ion exclusion. To establish which RSA parameters are responsive to salt stress, we performed a detailed time course experiment in which Arabidopsis (Arabidopsis thaliana) seedlings were grown on agar plates under different salt stress conditions. We captured RSA dynamics with quadratic growth functions (root-fit) and summarized the salt-induced differences in RSA dynamics in three growth parameters: MR elongation, average LR elongation, and increase in number of LRs. In the ecotype Columbia-0 accession of Arabidopsis, salt stress affected MR elongation more severely than LR elongation and an increase in LRs, leading to a significantly altered RSA. By quantifying RSA dynamics of 31 different Arabidopsis accessions in control and mild salt stress conditions, different strategies for regulation of MR and LR meristems and root branching were revealed. Different RSA strategies partially correlated with natural variation in abscisic acid sensitivity and different Na(+)/K(+) ratios in shoots of seedlings grown under mild salt stress. Applying root-fit to describe the dynamics of RSA allowed us to uncover the natural diversity in root morphology and cluster it into four response types that otherwise would have been overlooked.
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Affiliation(s)
- Magdalena M Julkowska
- Departments of Plant Physiology (M.M.J., S.M., M.A.H., C.T.) and Biosystems Data Analysis (H.C.J.H.), Swammerdam Institute for Life Sciences, University of Amsterdam, 1090GE Amsterdam, The Netherlands; andENZA Zaden Research and Development B.V., Enkhuizen, The Netherlands (R.F., G.-J.d.B.)
| | - Huub C J Hoefsloot
- Departments of Plant Physiology (M.M.J., S.M., M.A.H., C.T.) and Biosystems Data Analysis (H.C.J.H.), Swammerdam Institute for Life Sciences, University of Amsterdam, 1090GE Amsterdam, The Netherlands; andENZA Zaden Research and Development B.V., Enkhuizen, The Netherlands (R.F., G.-J.d.B.)
| | - Selena Mol
- Departments of Plant Physiology (M.M.J., S.M., M.A.H., C.T.) and Biosystems Data Analysis (H.C.J.H.), Swammerdam Institute for Life Sciences, University of Amsterdam, 1090GE Amsterdam, The Netherlands; andENZA Zaden Research and Development B.V., Enkhuizen, The Netherlands (R.F., G.-J.d.B.)
| | - Richard Feron
- Departments of Plant Physiology (M.M.J., S.M., M.A.H., C.T.) and Biosystems Data Analysis (H.C.J.H.), Swammerdam Institute for Life Sciences, University of Amsterdam, 1090GE Amsterdam, The Netherlands; andENZA Zaden Research and Development B.V., Enkhuizen, The Netherlands (R.F., G.-J.d.B.)
| | - Gert-Jan de Boer
- Departments of Plant Physiology (M.M.J., S.M., M.A.H., C.T.) and Biosystems Data Analysis (H.C.J.H.), Swammerdam Institute for Life Sciences, University of Amsterdam, 1090GE Amsterdam, The Netherlands; andENZA Zaden Research and Development B.V., Enkhuizen, The Netherlands (R.F., G.-J.d.B.)
| | - Michel A Haring
- Departments of Plant Physiology (M.M.J., S.M., M.A.H., C.T.) and Biosystems Data Analysis (H.C.J.H.), Swammerdam Institute for Life Sciences, University of Amsterdam, 1090GE Amsterdam, The Netherlands; andENZA Zaden Research and Development B.V., Enkhuizen, The Netherlands (R.F., G.-J.d.B.)
| | - Christa Testerink
- Departments of Plant Physiology (M.M.J., S.M., M.A.H., C.T.) and Biosystems Data Analysis (H.C.J.H.), Swammerdam Institute for Life Sciences, University of Amsterdam, 1090GE Amsterdam, The Netherlands; andENZA Zaden Research and Development B.V., Enkhuizen, The Netherlands (R.F., G.-J.d.B.)
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222
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Miao H, Wang Y, Liu J, Jia C, Hu W, Sun P, Jin Z, Xu B. Molecular cloning and expression analysis of the MaASR1 gene in banana and functional characterization under salt stress. ELECTRON J BIOTECHN 2014. [DOI: 10.1016/j.ejbt.2014.09.002] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
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223
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Ristova D, Busch W. Natural variation of root traits: from development to nutrient uptake. PLANT PHYSIOLOGY 2014; 166:518-27. [PMID: 25104725 PMCID: PMC4213084 DOI: 10.1104/pp.114.244749] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2014] [Accepted: 08/06/2014] [Indexed: 05/17/2023]
Abstract
The root system has a crucial role for plant growth and productivity. Due to the challenges of heterogeneous soil environments, diverse environmental signals are integrated into root developmental decisions. While root growth and growth responses are genetically determined, there is substantial natural variation for these traits. Studying the genetic basis of the natural variation of root growth traits can not only shed light on their evolution and ecological relevance but also can be used to map the genes and their alleles responsible for the regulation of these traits. Analysis of root phenotypes has revealed growth strategies and root growth responses to a variety of environmental stimuli, as well as the extent of natural variation of a variety of root traits including ion content, cellular properties, and root system architectures. Linkage and association mapping approaches have uncovered causal genes underlying the variation of these traits.
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Affiliation(s)
- Daniela Ristova
- Gregor Mendel Institute, Austrian Academy of Sciences, Vienna Bicenter, 1030 Vienna, Austria
| | - Wolfgang Busch
- Gregor Mendel Institute, Austrian Academy of Sciences, Vienna Bicenter, 1030 Vienna, Austria
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224
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Robbins NE, Trontin C, Duan L, Dinneny JR. Beyond the barrier: communication in the root through the endodermis. PLANT PHYSIOLOGY 2014; 166:551-9. [PMID: 25125504 PMCID: PMC4213087 DOI: 10.1104/pp.114.244871] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
The root endodermis is characterized by the Casparian strip and by the suberin lamellae, two hydrophobic barriers that restrict the free diffusion of molecules between the inner cell layers of the root and the outer environment. The presence of these barriers and the position of the endodermis between the inner and outer parts of the root require that communication between these two domains acts through the endodermis. Recent work on hormone signaling, propagation of calcium waves, and plant-fungal symbiosis has provided evidence in support of the hypothesis that the endodermis acts as a signaling center. The endodermis is also a unique mechanical barrier to organogenesis, which must be overcome through chemical and mechanical cross talk between cell layers to allow for development of new lateral organs while maintaining its barrier functions. In this review, we discuss recent findings regarding these two important aspects of the endodermis.
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Affiliation(s)
- Neil E Robbins
- Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305 (N.E.R., C.T., L.D., J.R.D.); andDepartment of Biology, Stanford University, Stanford, California 94305 (N.E.R.)
| | - Charlotte Trontin
- Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305 (N.E.R., C.T., L.D., J.R.D.); andDepartment of Biology, Stanford University, Stanford, California 94305 (N.E.R.)
| | - Lina Duan
- Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305 (N.E.R., C.T., L.D., J.R.D.); andDepartment of Biology, Stanford University, Stanford, California 94305 (N.E.R.)
| | - José R Dinneny
- Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305 (N.E.R., C.T., L.D., J.R.D.); andDepartment of Biology, Stanford University, Stanford, California 94305 (N.E.R.)
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225
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Kong X, Zhang M, Xu X, Li X, Li C, Ding Z. System analysis of microRNAs in the development and aluminium stress responses of the maize root system. PLANT BIOTECHNOLOGY JOURNAL 2014; 12:1108-21. [PMID: 24985700 DOI: 10.1111/pbi.12218] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2014] [Revised: 05/21/2014] [Accepted: 05/23/2014] [Indexed: 05/04/2023]
Abstract
MicroRNAs (miRNAs) are a class of regulatory small RNAs (sRNAs) that down-regulate target genes through mRNA cleavage or translational inhibition. miRNA is known to play an important role in the root development and environmental responses in both the Arabidopsis and rice. However, little information is available to form a complete view of miRNAs in the development of the maize root system and Al stress responses in maize. Four sRNA libraries were generated and sequenced from the early developmental stage of primary roots (PRY), the later developmental stage of maize primary roots (PRO), seminal roots (SR) and crown roots (CR). Through integrative analysis, we identified 278 miRNAs (246 conserved and 32 novel ones) and found that the expression patterns of miRNAs differed dramatically in different maize roots. The potential targets of the identified conserved and novel miRNAs were also predicted. In addition, our data showed that CR is more resistant to Al stress compared with PR and SR, and the differentially expressed miRNAs are likely to play significant roles in different roots in response to environmental stress such as Al stress. Here, we demonstrate that the expression patterns of miRNAs are highly diversified in different maize roots. The differentially expressed miRNAs are correlated with both the development and environmental responses in the maize root. This study not only improves our knowledge about the roles of miRNAs in maize root development but also reveals the potential role of miRNAs in the environmental responses of different maize roots.
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Affiliation(s)
- Xiangpei Kong
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, College of Life Sciences, Shandong University, Jinan, China
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226
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Iglesias MJ, Terrile MC, Windels D, Lombardo MC, Bartoli CG, Vazquez F, Estelle M, Casalongué CA. MiR393 regulation of auxin signaling and redox-related components during acclimation to salinity in Arabidopsis. PLoS One 2014; 9:e107678. [PMID: 25222737 PMCID: PMC4164656 DOI: 10.1371/journal.pone.0107678] [Citation(s) in RCA: 90] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2014] [Accepted: 08/15/2014] [Indexed: 02/08/2023] Open
Abstract
One of the most striking aspects of plant plasticity is the modulation of development in response to environmental changes. Plant growth and development largely depend on the phytohormone auxin that exerts its function through a partially redundant family of F-box receptors, the TIR1-AFBs. We have previously reported that the Arabidopsis double mutant tir1 afb2 is more tolerant to salt stress than wild-type plants and we hypothesized that down-regulation of auxin signaling might be part of Arabidopsis acclimation to salinity. In this work, we show that NaCl-mediated salt stress induces miR393 expression by enhancing the transcription of AtMIR393A and leads to a concomitant reduction in the levels of the TIR1 and AFB2 receptors. Consequently, NaCl triggers stabilization of Aux/IAA repressors leading to down-regulation of auxin signaling. Further, we report that miR393 is likely involved in repression of lateral root (LR) initiation, emergence and elongation during salinity, since the mir393ab mutant shows reduced inhibition of emergent and mature LR number and length upon NaCl-treatment. Additionally, mir393ab mutant plants have increased levels of reactive oxygen species (ROS) in LRs, and reduced ascorbate peroxidase (APX) enzymatic activity compared with wild-type plants during salinity. Thus, miR393 regulation of the TIR1 and AFB2 receptors could be a critical checkpoint between auxin signaling and specfic redox-associated components in order to coordinate tissue and time-specific growth responses and tolerance during acclimation to salinity in Arabidopsis.
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Affiliation(s)
- María José Iglesias
- Instituto de Investigaciones Biológicas, UE-CONICET-UNMDP, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, Mar del Plata, Argentina
| | - María Cecilia Terrile
- Instituto de Investigaciones Biológicas, UE-CONICET-UNMDP, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, Mar del Plata, Argentina
| | - David Windels
- Instituto de Fisiología Vegetal, Facultad de Ciencias Naturales, Universidad Nacional de La Plata-CCT La Plata CONICET, La Plata, Argentina
| | - María Cristina Lombardo
- Departamento de Biología e Instituto de Investigaciones Biológicas, UE-CONICET-UNMDP, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, Mar del Plata, Argentina
| | - Carlos Guillermo Bartoli
- Instituto de Fisiología Vegetal, Facultad de Ciencias Naturales, Universidad Nacional de La Plata-CCT La Plata CONICET, La Plata, Argentina
| | - Franck Vazquez
- Botanical Institute of the University of Basel, Zürich-Basel Plant Science Center, Part of the Swiss Plant Science Web, Department of Environmental Sciences, Basel, Switzerland
| | - Mark Estelle
- Section of Cell and Developmental Biology, University of California San Diego, San Diego, California, United States of America
- Howard Hughes Medical Institute, University of California San Diego, San Diego, California, United States of America
| | - Claudia Anahí Casalongué
- Instituto de Investigaciones Biológicas, UE-CONICET-UNMDP, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, Mar del Plata, Argentina
- * E-mail:
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227
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Yadav V, Molina I, Ranathunge K, Castillo IQ, Rothstein SJ, Reed JW. ABCG transporters are required for suberin and pollen wall extracellular barriers in Arabidopsis. THE PLANT CELL 2014; 26:3569-88. [PMID: 25217507 PMCID: PMC4213157 DOI: 10.1105/tpc.114.129049] [Citation(s) in RCA: 186] [Impact Index Per Article: 18.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2014] [Revised: 08/02/2014] [Accepted: 08/19/2014] [Indexed: 05/17/2023]
Abstract
Effective regulation of water balance in plants requires localized extracellular barriers that control water and solute movement. We describe a clade of five Arabidopsis thaliana ABCG half-transporters that are required for synthesis of an effective suberin barrier in roots and seed coats (ABCG2, ABCG6, and ABCG20) and for synthesis of an intact pollen wall (ABCG1 and ABCG16). Seed coats of abcg2 abcg6 abcg20 triple mutant plants had increased permeability to tetrazolium red and decreased suberin content. The root system of triple mutant plants was more permeable to water and salts in a zone complementary to that affected by the Casparian strip. Suberin of mutant roots and seed coats had distorted lamellar structure and reduced proportions of aliphatic components. Root wax from the mutant was deficient in alkylhydroxycinnamate esters. These mutant plants also had few lateral roots and precocious secondary growth in primary roots. abcg1 abcg16 double mutants defective in the other two members of the clade had pollen with defects in the nexine layer of the tapetum-derived exine pollen wall and in the pollen-derived intine layer. Mutant pollen collapsed at the time of anther desiccation. These mutants reveal transport requirements for barrier synthesis as well as physiological and developmental consequences of barrier deficiency.
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Affiliation(s)
- Vandana Yadav
- Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3280
| | - Isabel Molina
- Department of Biology, Algoma University, Sault Ste Marie, Ontario P6A 2G4, Canada
| | - Kosala Ranathunge
- Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada
| | | | - Steven J Rothstein
- Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada
| | - Jason W Reed
- Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-3280
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228
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Cabot C, Sibole JV, Barceló J, Poschenrieder C. Lessons from crop plants struggling with salinity. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2014; 226:2-13. [PMID: 25113445 DOI: 10.1016/j.plantsci.2014.04.013] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2013] [Revised: 03/28/2014] [Accepted: 04/21/2014] [Indexed: 05/25/2023]
Abstract
Salinity is a persistent problem, causing important losses in irrigated agriculture. According to global climate change prediction models, salinity is expected to expand in the near future. Although intensive studies have been conducted on the mechanisms by which plants cope with saline conditions, the multi-component nature of salt stress tolerance has rendered most plant breeding efforts to improve the plant's response to salinity unsuccessful. This occurs despite the extensive genetic diversity shown by higher plants for salt tolerance and the similar mechanisms found in salt-sensitive and salt-tolerant genotypes in response to the presence of excess of salts in the growth media. On the other hand, there is an urge to increase crop yield to the maximum to cope with the growing world population demands for food and fuel. Here, we examine some major elements and signaling mechanisms involved in the plant's response to salinity following the pathway of salt-footprints from the soil environment to leaf. Some of the possible contrasting determinants for a better-balanced resource allocation between salt tolerance and plant growth and yield are considered.
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Affiliation(s)
- Catalina Cabot
- Departament de Biologia, Universitat de les Illes Balears, 07122 Palma, Illes Balears, Spain.
| | - John V Sibole
- Departament de Biologia, Universitat de les Illes Balears, 07122 Palma, Illes Balears, Spain
| | - Juan Barceló
- Lab. Fisiologia Vegetal, Universitat Autònoma de Barcelona, E-08193 Bellaterra, Spain
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229
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Endo A, Nelson KM, Thoms K, Abrams SR, Nambara E, Sato Y. Functional characterization of xanthoxin dehydrogenase in rice. JOURNAL OF PLANT PHYSIOLOGY 2014; 171:1231-40. [PMID: 25014258 DOI: 10.1016/j.jplph.2014.05.003] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2014] [Revised: 05/25/2014] [Accepted: 05/26/2014] [Indexed: 05/05/2023]
Abstract
Abscisic acid (ABA) is a phytohormone that plays a key role in biotic and abiotic stress responses. ABA metabolic genes are promising targets for molecular breeding work to improve stress tolerance in crops. The accumulation of ABA does not always improve stress tolerance since stress-induced accumulation of ABA in pollen inhibits the normal course of gametogenesis, affecting grain yields in cereals. This effect highlights the importance of manipulating the ABA levels according to the type of tissues. The aim of this study was to assign an ABA biosynthetic enzyme, xanthoxin dehydrogenase (XanDH), as a functional marker to modulate ABA levels in rice. XanDH is a member of the short-chain dehydrogenase/reductase family that catalyzes the conversion of xanthoxin to abscisyl aldehyde (ABAld). Previously, this enzyme had only been identified in Arabidopsis, as AtABA2. In this study, a XanDH named OsABA2 was identified in rice. Phylogenetic analysis indicated that a single gene encodes for OsABA2 in the rice genome. Its amino acid sequence contains two motifs that are essential for cofactor binding and catalytic activity. Expression analysis of OsABA2 mRNA showed that the transcript level did not change in response to treatment with ABA or dehydration. Recombinant OsABA2 protein expressed in Escherichia coli converted xanthoxin to ABAld in an NAD-dependent manner. Moreover, expression of OsABA2 in an Arabidopsis aba2 mutant rescued the aba2 mutant phenotypes, characterized by reduced growth, increased water loss, and germination in the presence of paclobutrazol, a gibberellin biosynthesis inhibitor or high concentration of glucose. These results indicate that OsABA2 is a rice XanDH that functions in ABA biosynthesis.
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Affiliation(s)
- Akira Endo
- Crop Breeding Research Division, National Agriculture and Food Research Organization (NARO), Hokkaido Agricultural Research Center, 1 Hitsujigaoka, Toyohira-ku, Sapporo, Hokkaido 062-8555, Japan
| | - Ken M Nelson
- National Research Council Canada, Saskatoon, Saskatchewan S7N 0W9, Canada
| | - Ken Thoms
- Department of Chemistry, University of Saskatchewan, 110 Science Place, Saskatoon, Saskatchewan S7N 5C7, Canada
| | - Suzanne R Abrams
- Department of Chemistry, University of Saskatchewan, 110 Science Place, Saskatoon, Saskatchewan S7N 5C7, Canada
| | - Eiji Nambara
- Department of Cell & Systems Biology, University of Toronto, 25 Willcocks Street, Toronto, Ontario M5S 3B2, Canada; The Center for the Analysis of Genome Evolution and Function, University of Toronto, 25 Willcocks Street, Toronto, Ontario M5S 3B2, Canada
| | - Yutaka Sato
- Crop Breeding Research Division, National Agriculture and Food Research Organization (NARO), Hokkaido Agricultural Research Center, 1 Hitsujigaoka, Toyohira-ku, Sapporo, Hokkaido 062-8555, Japan.
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230
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Peters C, Kim SC, Devaiah S, Li M, Wang X. Non-specific phospholipase C5 and diacylglycerol promote lateral root development under mild salt stress in Arabidopsis. PLANT, CELL & ENVIRONMENT 2014; 37:2002-13. [PMID: 24689655 DOI: 10.1111/pce.12334] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2014] [Revised: 03/11/2014] [Accepted: 03/14/2014] [Indexed: 05/09/2023]
Abstract
Developing a robust root system is crucial to plant survival and competition for soil resources. Here we report that the non-specific phospholipase C5 (NPC5) and its derived lipid mediator diacylglycerol (DAG) mediate lateral root (LR) development during salt stress in Arabidopsis thaliana. T-DNA knockout mutant npc5-1 produced few to no LR under mild NaCl stress, whereas overexpression of NPC5 increased LR number. Roots of npc5-1 contained a lower level of DAG than wild type, whereas NPC5 overexpressor exhibited an increase in DAG level. Application of DAG, but not phosphatidic acid, fully restored LR growth of npc5-1 to that of wild type under NaCl stress. NPC5 expression was significantly induced in Arabidopsis seedlings treated with NaCl. Npc5-1 was less responsive to auxin-mediated root growth than the wild type. These results indicate that NPC5 mediates LR development in response to salt stress and suggest that DAG functions as a lipid mediator in the stress signalling.
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Affiliation(s)
- Carlotta Peters
- Department of Biology, University of Missouri, St. Louis, MO, 63121, USA; Donald Danforth Plant Science Center, St. Louis, MO, 63132, USA
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231
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Pierik R, Testerink C. The art of being flexible: how to escape from shade, salt, and drought. PLANT PHYSIOLOGY 2014; 166:5-22. [PMID: 24972713 PMCID: PMC4149730 DOI: 10.1104/pp.114.239160] [Citation(s) in RCA: 63] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2014] [Accepted: 05/20/2014] [Indexed: 05/18/2023]
Abstract
Environmental stresses, such as shading of the shoot, drought, and soil salinity, threaten plant growth, yield, and survival. Plants can alleviate the impact of these stresses through various modes of phenotypic plasticity, such as shade avoidance and halotropism. Here, we review the current state of knowledge regarding the mechanisms that control plant developmental responses to shade, salt, and drought stress. We discuss plant hormones and cellular signaling pathways that control shoot branching and elongation responses to shade and root architecture modulation in response to drought and salinity. Because belowground stresses also result in aboveground changes and vice versa, we then outline how a wider palette of plant phenotypic traits is affected by the individual stresses. Consequently, we argue for a research agenda that integrates multiple plant organs, responses, and stresses. This will generate the scientific understanding needed for future crop improvement programs aiming at crops that can maintain yields under variable and suboptimal conditions.
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Affiliation(s)
- Ronald Pierik
- Plant Ecophysiology, Institute of Environmental Biology, Utrecht University, 3584 CH Utrecht, The Netherlands (R.P.); andPlant Physiology, Swammerdam Institute for Life Sciences, University of Amsterdam, 1098 XH Amsterdam, The Netherlands (C.T.)
| | - Christa Testerink
- Plant Ecophysiology, Institute of Environmental Biology, Utrecht University, 3584 CH Utrecht, The Netherlands (R.P.); andPlant Physiology, Swammerdam Institute for Life Sciences, University of Amsterdam, 1098 XH Amsterdam, The Netherlands (C.T.)
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232
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Gibbs DJ, Voß U, Harding SA, Fannon J, Moody LA, Yamada E, Swarup K, Nibau C, Bassel GW, Choudhary A, Lavenus J, Bradshaw SJ, Stekel DJ, Bennett MJ, Coates JC. AtMYB93 is a novel negative regulator of lateral root development in Arabidopsis. THE NEW PHYTOLOGIST 2014; 203:1194-1207. [PMID: 24902892 PMCID: PMC4286813 DOI: 10.1111/nph.12879] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2014] [Accepted: 05/07/2014] [Indexed: 05/18/2023]
Abstract
Plant root system plasticity is critical for survival in changing environmental conditions. One important aspect of root architecture is lateral root development, a complex process regulated by hormone, environmental and protein signalling pathways. Here we show, using molecular genetic approaches, that the MYB transcription factor AtMYB93 is a novel negative regulator of lateral root development in Arabidopsis. We identify AtMYB93 as an interaction partner of the lateral-root-promoting ARABIDILLO proteins. Atmyb93 mutants have faster lateral root developmental progression and enhanced lateral root densities, while AtMYB93-overexpressing lines display the opposite phenotype. AtMYB93 is expressed strongly, specifically and transiently in the endodermal cells overlying early lateral root primordia and is additionally induced by auxin in the basal meristem of the primary root. Furthermore, Atmyb93 mutant lateral root development is insensitive to auxin, indicating that AtMYB93 is required for normal auxin responses during lateral root development. We propose that AtMYB93 is part of a novel auxin-induced negative feedback loop stimulated in a select few endodermal cells early during lateral root development, ensuring that lateral roots only develop when absolutely required. Putative AtMYB93 homologues are detected throughout flowering plants and represent promising targets for manipulating root systems in diverse crop species.
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Affiliation(s)
- Daniel J Gibbs
- School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK
| | - Ute Voß
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, Nottingham, LE12 5RD, UK
| | - Susan A Harding
- School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK
| | - Jessica Fannon
- School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK
| | - Laura A Moody
- School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK
| | - Erika Yamada
- School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK
| | - Kamal Swarup
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, Nottingham, LE12 5RD, UK
| | - Candida Nibau
- School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK
| | - George W Bassel
- School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK
| | - Anushree Choudhary
- School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK
| | - Julien Lavenus
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, Nottingham, LE12 5RD, UK
| | - Susan J Bradshaw
- School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK
| | - Dov J Stekel
- School of Biosciences, University of Nottingham, Nottingham, LE12 5RD, UK
| | - Malcolm J Bennett
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, Nottingham, LE12 5RD, UK
| | - Juliet C Coates
- School of Biosciences, University of Birmingham, Birmingham, B15 2TT, UK
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233
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González-Guzmán M, Rodríguez L, Lorenzo-Orts L, Pons C, Sarrión-Perdigones A, Fernández MA, Peirats-Llobet M, Forment J, Moreno-Alvero M, Cutler SR, Albert A, Granell A, Rodríguez PL. Tomato PYR/PYL/RCAR abscisic acid receptors show high expression in root, differential sensitivity to the abscisic acid agonist quinabactin, and the capability to enhance plant drought resistance. JOURNAL OF EXPERIMENTAL BOTANY 2014; 65:4451-64. [PMID: 24863435 PMCID: PMC4112642 DOI: 10.1093/jxb/eru219] [Citation(s) in RCA: 118] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
Abscisic acid (ABA) plays a crucial role in the plant's response to both biotic and abiotic stress. Sustainable production of food faces several key challenges, particularly the generation of new varieties with improved water use efficiency and drought tolerance. Different studies have shown the potential applications of Arabidopsis PYR/PYL/RCAR ABA receptors to enhance plant drought resistance. Consequently the functional characterization of orthologous genes in crops holds promise for agriculture. The full set of tomato (Solanum lycopersicum) PYR/PYL/RCAR ABA receptors have been identified here. From the 15 putative tomato ABA receptors, 14 of them could be grouped in three subfamilies that correlated well with corresponding Arabidopsis subfamilies. High levels of expression of PYR/PYL/RCAR genes was found in tomato root, and some genes showed predominant expression in leaf and fruit tissues. Functional characterization of tomato receptors was performed through interaction assays with Arabidopsis and tomato clade A protein phosphatase type 2Cs (PP2Cs) as well as phosphatase inhibition studies. Tomato receptors were able to inhibit the activity of clade A PP2Cs differentially in an ABA-dependent manner, and at least three receptors were sensitive to the ABA agonist quinabactin, which inhibited tomato seed germination. Indeed, the chemical activation of ABA signalling induced by quinabactin was able to activate stress-responsive genes. Both dimeric and monomeric tomato receptors were functional in Arabidopsis plant cells, but only overexpression of monomeric-type receptors conferred enhanced drought resistance. In summary, gene expression analyses, and chemical and transgenic approaches revealed distinct properties of tomato PYR/PYL/RCAR ABA receptors that might have biotechnological implications.
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Affiliation(s)
- Miguel González-Guzmán
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
| | - Lesia Rodríguez
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
| | - Laura Lorenzo-Orts
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
| | - Clara Pons
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
| | - Alejandro Sarrión-Perdigones
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
| | - Maria A Fernández
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
| | - Marta Peirats-Llobet
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
| | - Javier Forment
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
| | - Maria Moreno-Alvero
- Departamento de Cristalografía y Biología Estructural, Instituto de Química Física 'Rocasolano', CSIC, Serrano 119, E-28006 Madrid, Spain
| | - Sean R Cutler
- Department of Botany and Plant Sciences, Center for Plant Cell Biology, University of California, Riverside, CA 92521, USA
| | - Armando Albert
- Departamento de Cristalografía y Biología Estructural, Instituto de Química Física 'Rocasolano', CSIC, Serrano 119, E-28006 Madrid, Spain
| | - Antonio Granell
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
| | - Pedro L Rodríguez
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Cientificas-Universidad Politecnica de Valencia, ES-46022 Valencia, Spain
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234
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Tian H, De Smet I, Ding Z. Shaping a root system: regulating lateral versus primary root growth. TRENDS IN PLANT SCIENCE 2014; 19:426-31. [PMID: 24513255 DOI: 10.1016/j.tplants.2014.01.007] [Citation(s) in RCA: 102] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2013] [Revised: 01/04/2014] [Accepted: 01/14/2014] [Indexed: 05/22/2023]
Abstract
Primary and lateral roots comprise root systems, which are vital to the growth and survival of plants. Several molecular mechanisms associated with primary and lateral root growth have been described, including some common regulatory factors for their initiation and development. However, in this opinion article, we discuss the distinct growth behavior of lateral roots in response to environmental cues, such as salinity, gravity, and nutrient availability, which are mediated via specific regulators. We propose that differential growth dynamics between primary and lateral roots are crucial for plants to adapt to the ever-changing environmental conditions.
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Affiliation(s)
- Huiyu Tian
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Sciences, Shandong University, Jinan, Shandong 250100, PR China
| | - Ive De Smet
- Department of Plant Systems Biology, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium; Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium; Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough, LE12 5RD, UK.
| | - Zhaojun Ding
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Sciences, Shandong University, Jinan, Shandong 250100, PR China.
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235
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Yang ZB, Geng X, He C, Zhang F, Wang R, Horst WJ, Ding Z. TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis. THE PLANT CELL 2014; 26:2889-904. [PMID: 25052716 PMCID: PMC4145121 DOI: 10.1105/tpc.114.127993] [Citation(s) in RCA: 129] [Impact Index Per Article: 12.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2014] [Revised: 06/18/2014] [Accepted: 06/28/2014] [Indexed: 05/02/2023]
Abstract
The transition zone (TZ) of the root apex is the perception site of Al toxicity. Here, we show that exposure of Arabidopsis thaliana roots to Al induces a localized enhancement of auxin signaling in the root-apex TZ that is dependent on TAA1, which encodes a Trp aminotransferase and regulates auxin biosynthesis. TAA1 is specifically upregulated in the root-apex TZ in response to Al treatment, thus mediating local auxin biosynthesis and inhibition of root growth. The TAA1-regulated local auxin biosynthesis in the root-apex TZ in response to Al stress is dependent on ethylene, as revealed by manipulating ethylene homeostasis via the precursor of ethylene biosynthesis 1-aminocyclopropane-1-carboxylic acid, the inhibitor of ethylene biosynthesis aminoethoxyvinylglycine, or mutant analysis. In response to Al stress, ethylene signaling locally upregulates TAA1 expression and thus auxin responses in the TZ and results in auxin-regulated root growth inhibition through a number of auxin response factors (ARFs). In particular, ARF10 and ARF16 are important in the regulation of cell wall modification-related genes. Our study suggests a mechanism underlying how environmental cues affect root growth plasticity through influencing local auxin biosynthesis and signaling.
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Affiliation(s)
- Zhong-Bao Yang
- Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan 250100, People's Republic of China
| | - Xiaoyu Geng
- Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan 250100, People's Republic of China
| | - Chunmei He
- Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan 250100, People's Republic of China
| | - Feng Zhang
- Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan 250100, People's Republic of China
| | - Rong Wang
- Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan 250100, People's Republic of China
| | - Walter J Horst
- Institute of Plant Nutrition, Leibniz Universität Hannover, 30419 Hannover, Germany
| | - Zhaojun Ding
- Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan 250100, People's Republic of China
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236
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Rombolá-Caldentey B, Rueda-Romero P, Iglesias-Fernández R, Carbonero P, Oñate-Sánchez L. Arabidopsis DELLA and two HD-ZIP transcription factors regulate GA signaling in the epidermis through the L1 box cis-element. THE PLANT CELL 2014; 26:2905-19. [PMID: 24989044 PMCID: PMC4145122 DOI: 10.1105/tpc.114.127647] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2014] [Revised: 05/13/2014] [Accepted: 06/13/2014] [Indexed: 05/21/2023]
Abstract
Gibberellins (GAs) are plant hormones that affect plant growth and regulate gene expression differentially across tissues. To study the molecular mechanisms underlying GA signaling in Arabidopsis thaliana, we focused on a GDSL lipase gene (LIP1) induced by GA and repressed by DELLA proteins. LIP1 contains an L1 box promoter sequence, conserved in the promoters of epidermis-specific genes, that is bound by ATML1, an HD-ZIP transcription factor required for epidermis specification. In this study, we demonstrate that LIP1 is specifically expressed in the epidermis and that its L1 box sequence mediates GA-induced transcription. We show that this sequence is overrepresented in the upstream regulatory regions of GA-induced and DELLA-repressed transcriptomes and that blocking GA signaling in the epidermis represses the expression of L1 box-containing genes and negatively affects seed germination. We show that DELLA proteins interact directly with ATML1 and its paralogue PDF2 and that silencing of both HD-ZIP transcription factors inhibits epidermal gene expression and delays germination. Our results indicate that, upon seed imbibition, increased GA levels reduce DELLA protein abundance and release ATML1/PDF2 to activate L1 box gene expression, thus enhancing germination potential.
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Affiliation(s)
- Belén Rombolá-Caldentey
- Centro de Biotecnología y Genómica de Plantas, UPM-INIA, and E.T.S.I. Agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain
| | - Paloma Rueda-Romero
- Centro de Biotecnología y Genómica de Plantas, UPM-INIA, and E.T.S.I. Agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain
| | - Raquel Iglesias-Fernández
- Centro de Biotecnología y Genómica de Plantas, UPM-INIA, and E.T.S.I. Agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain
| | - Pilar Carbonero
- Centro de Biotecnología y Genómica de Plantas, UPM-INIA, and E.T.S.I. Agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain
| | - Luis Oñate-Sánchez
- Centro de Biotecnología y Genómica de Plantas, UPM-INIA, and E.T.S.I. Agrónomos, Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain
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237
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Zhao Y, Xing L, Wang X, Hou YJ, Gao J, Wang P, Duan CG, Zhu X, Zhu JK. The ABA receptor PYL8 promotes lateral root growth by enhancing MYB77-dependent transcription of auxin-responsive genes. Sci Signal 2014; 7:ra53. [PMID: 24894996 DOI: 10.1126/scisignal.2005051] [Citation(s) in RCA: 206] [Impact Index Per Article: 20.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
The phytohormone abscisic acid (ABA) regulates plant growth, development, and abiotic stress responses. ABA signaling is mediated by a group of receptors known as the PYR1/PYL/RCAR family, which includes the pyrabactin resistance 1-like protein PYL8. Under stress conditions, ABA signaling activates SnRK2 protein kinases to inhibit lateral root growth after emergence from the primary root. However, even in the case of persistent stress, lateral root growth eventually recovers from inhibition. We showed that PYL8 is required for the recovery of lateral root growth, following inhibition by ABA. PYL8 directly interacted with the transcription factors MYB77, MYB44, and MYB73. The interaction of PYL8 and MYB77 increased the binding of MYB77 to its target MBSI motif in the promoters of multiple auxin-responsive genes. Compared to wild-type seedlings, the lateral root growth of pyl8 mutant seedlings and myb77 mutant seedlings was more sensitive to inhibition by ABA. The recovery of lateral root growth was delayed in pyl8 mutant seedlings in the presence of ABA, and the defect was rescued by exposing pyl8 mutant seedlings to the auxin IAA (3-indoleacetic acid). Thus, PYL8 promotes lateral root growth independently of the core ABA-SnRK2 signaling pathway by enhancing the activities of MYB77 and its paralogs, MYB44 and MYB73, to augment auxin signaling.
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Affiliation(s)
- Yang Zhao
- Shanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China.,Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907, USA
| | - Lu Xing
- Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907, USA.,School of Life Sciences, University of Science and Technology of China, Hefei 230026, China
| | - Xingang Wang
- Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907, USA
| | - Yueh-Ju Hou
- Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907, USA
| | - Jinghui Gao
- Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907, USA.,College of Animal Science and Technology, Northwest A&F University, Yangling, Shaan'xi 712100, China
| | - Pengcheng Wang
- Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907, USA
| | - Cheng-Guo Duan
- Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907, USA
| | - Xiaohong Zhu
- Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907, USA
| | - Jian-Kang Zhu
- Shanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China.,Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907, USA
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238
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Gu X, Xu T, He Y. A histone H3 lysine-27 methyltransferase complex represses lateral root formation in Arabidopsis thaliana. MOLECULAR PLANT 2014; 7:977-988. [PMID: 24711289 DOI: 10.1093/mp/ssu035] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
Root branching or lateral root formation is crucial to maximize a root system acquiring nutrients and water from soil. A lateral root (LR) arises from asymmetric cell division of founder cells (FCs) in a pre-branch site of the primary root, and FC establishment is essential for lateral root formation. FCs are known to be specified from xylem pole pericycle cells, but the molecular genetic mechanisms underlying FC establishment are unclear. Here, we report that, in Arabidopsis thaliana, a PRC2 (for Polycomb repressive complex 2) histone H3 lysine-27 (H3K27) methyltransferase complex, functions to inhibit FC establishment during LR initiation. We found that functional loss of the PRC2 subunits EMF2 (for EMBRYONIC FLOWER 2) or CLF (for CURLY LEAF) leads to a great increase in the number of LRs formed in the primary root. The CLF H3K27 methyltransferase binds to chromatin of the auxin efflux carrier gene PIN FORMED 1 (PIN1), deposits the repressive mark H3K27me3 to repress its expression, and functions to down-regulate auxin maxima in root tissues and inhibit FC establishment. Our findings collectively suggest that EMF2-CLF PRC2 acts to down-regulate root auxin maxima and show that this complex represses LR formation in Arabidopsis.
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Affiliation(s)
- Xiaofeng Gu
- Department of Biological Sciences, National University of Singapore, Singapore; Temasek Life Sciences Laboratory, Singapore
| | - Tongda Xu
- Temasek Life Sciences Laboratory, Singapore; Shanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
| | - Yuehui He
- Department of Biological Sciences, National University of Singapore, Singapore; Temasek Life Sciences Laboratory, Singapore; Shanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.
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239
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Deinlein U, Stephan AB, Horie T, Luo W, Xu G, Schroeder JI. Plant salt-tolerance mechanisms. TRENDS IN PLANT SCIENCE 2014; 19:371-9. [PMID: 24630845 PMCID: PMC4041829 DOI: 10.1016/j.tplants.2014.02.001] [Citation(s) in RCA: 765] [Impact Index Per Article: 76.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2013] [Revised: 01/30/2014] [Accepted: 02/03/2014] [Indexed: 05/18/2023]
Abstract
Crop performance is severely affected by high salt concentrations in soils. To engineer more salt-tolerant plants it is crucial to unravel the key components of the plant salt-tolerance network. Here we review our understanding of the core salt-tolerance mechanisms in plants. Recent studies have shown that stress sensing and signaling components can play important roles in regulating the plant salinity stress response. We also review key Na+ transport and detoxification pathways and the impact of epigenetic chromatin modifications on salinity tolerance. In addition, we discuss the progress that has been made towards engineering salt tolerance in crops, including marker-assisted selection and gene stacking techniques. We also identify key open questions that remain to be addressed in the future.
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Affiliation(s)
- Ulrich Deinlein
- Division of Biological Sciences, Food and Fuel for the 21st Century Center, University of California San Diego, La Jolla, CA 92093-0116, USA
| | - Aaron B Stephan
- Division of Biological Sciences, Food and Fuel for the 21st Century Center, University of California San Diego, La Jolla, CA 92093-0116, USA
| | - Tomoaki Horie
- Division of Applied Biology, Faculty of Textile Science and Technology, Shinshu University, Nagano 386-8567, Japan
| | - Wei Luo
- Division of Biological Sciences, Food and Fuel for the 21st Century Center, University of California San Diego, La Jolla, CA 92093-0116, USA; State Key Laboratory of Crop Genetics and Germplasm Enhancement, MOA Key Laboratory of Plant Nutrition and Fertilization in Lower-Middle Reaches of the Yangtze River, Nanjing Agricultural University, Nanjing 210095, China
| | - Guohua Xu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, MOA Key Laboratory of Plant Nutrition and Fertilization in Lower-Middle Reaches of the Yangtze River, Nanjing Agricultural University, Nanjing 210095, China
| | - Julian I Schroeder
- Division of Biological Sciences, Food and Fuel for the 21st Century Center, University of California San Diego, La Jolla, CA 92093-0116, USA.
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240
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Tian H, Jia Y, Niu T, Yu Q, Ding Z. The key players of the primary root growth and development also function in lateral roots in Arabidopsis. PLANT CELL REPORTS 2014; 33:745-53. [PMID: 24504658 DOI: 10.1007/s00299-014-1575-x] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2013] [Revised: 12/25/2013] [Accepted: 01/20/2014] [Indexed: 05/04/2023]
Abstract
The core regulators which are required for primary root growth and development also function in lateral root development or lateral root stem cell niche maintenance. The primary root systems and the lateral root systems are the two important root systems which are vital to the survival of plants. Though the molecular mechanism of the growth and development of both the primary root systems and the lateral root systems have been extensively studied individually in Arabidopsis, there are not so much evidence to show that if both root systems share common regulatory mechanisms. AP2 family transcription factors such as PLT1 (PLETHORA1) and PLT2, GRAS family transcription factors such as SCR (SCARECROW) and SHR (SHORT ROOT) and WUSCHEL-RELATED HOMEOBOX transcription factor WOX5 have been extensively studied and found to be essential for primary root growth and development. In this study, through the expression pattern analysis and mutant examinations, we found that these core regulators also function in lateral root development or lateral root stem cell niche maintenance.
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Affiliation(s)
- Huiyu Tian
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Sciences, Shandong University, Jinan, People's Republic of China
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241
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Waadt R, Hitomi K, Nishimura N, Hitomi C, Adams SR, Getzoff ED, Schroeder JI. FRET-based reporters for the direct visualization of abscisic acid concentration changes and distribution in Arabidopsis. eLife 2014; 3:e01739. [PMID: 24737861 PMCID: PMC3985518 DOI: 10.7554/elife.01739] [Citation(s) in RCA: 164] [Impact Index Per Article: 16.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023] Open
Abstract
Abscisic acid (ABA) is a plant hormone that regulates plant growth and development and mediates abiotic stress responses. Direct cellular monitoring of dynamic ABA concentration changes in response to environmental cues is essential for understanding ABA action. We have developed ABAleons: ABA-specific optogenetic reporters that instantaneously convert the phytohormone-triggered interaction of ABA receptors with PP2C-type phosphatases to send a fluorescence resonance energy transfer (FRET) signal in response to ABA. We report the design, engineering and use of ABAleons with ABA affinities in the range of 100–600 nM to map ABA concentration changes in plant tissues with spatial and temporal resolution. High ABAleon expression can partially repress Arabidopsis ABA responses. ABAleons report ABA concentration differences in distinct cell types, ABA concentration increases in response to low humidity and NaCl in guard cells and to NaCl and osmotic stress in roots and ABA transport from the hypocotyl to the shoot and root. DOI:http://dx.doi.org/10.7554/eLife.01739.001 Plants are able to respond to detrimental changes in their environment—when, for example, water becomes scarce or the soil becomes too salty—in ways that minimize stress and damage caused by these changes. Hormones are chemicals that trigger the plant’s response under these circumstances. Abscisic acid is the hormone that regulates how plants respond to drought and salt stress and that controls the plant growth in these conditions. In the past, it was possible to measure the average level of this hormone in a given tissue, but not the level in individual cells in a living plant. Moreover, it was difficult to follow directly how abscisic acid moved between the plant cells, tissues or organs. Now, Waadt et al. (and independently Jones et al.) have developed tools that can measure the levels of abscisic acid within individual cells in living plants and in real time. The plants were genetically engineered to produce sensor proteins with two properties: they can bind to abscisic acid in a reversible manner, and they contain two ‘tags’ that fluoresce at different wavelengths. Shining light onto the plant at a specific wavelength that is only absorbed by one of the tags actually causes both of the tags on the sensor proteins to fluoresce. However, the sensors fluoresce more at one wavelength when they are bound to abscisic acid, and more at the other wavelength when they are not bound to abscisic acid. Hence, measuring the ratio of these two wavelengths in the light that is given off by the sensor proteins can be used as a measure of the concentration of abscisic acid in a plant cell. Waadt et al. developed sensor proteins called ‘ABAleons’, and used one of these to analyze the uptake, distribution and movement of abscisic acid in different tissues in the model plant Arabidopsis thaliana. Changes in the level of abscisic acid could be detected at the level of an individual plant cell, and over time scales of fractions of seconds to hours. ABAleons also revealed that the concentration of abscisic acid in guard cells—specialized cells that help stop the loss of water vapor from a leaf—increases when humidity levels are low, or when salt levels are high. Low water levels, or high salt levels, also slowly increased the concentration of abscisic acid in the roots of the plant. Furthermore, Waadt et al. saw that abscisic acid moved long distances from the base of the stem up into the shoot, and down to the root. Waadt et al. also report that the ABAleons made plants less responsive to abscisic acid, possibly because binding to the ABAleons reduced the amount of abscisic acid that was available to perform its role as a hormone. The next challenge is to engineer ABAleons that minimize this unwanted side effect, and then go on to use ABAleons to study environmental conditions and proteins involved in plant hormone responses. DOI:http://dx.doi.org/10.7554/eLife.01739.002
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Affiliation(s)
- Rainer Waadt
- Division of Biological Sciences, Cell and Developmental Biology Section, University of California, San Diego, La Jolla, United States
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242
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Jones AM, Danielson JA, Manojkumar SN, Lanquar V, Grossmann G, Frommer WB. Abscisic acid dynamics in roots detected with genetically encoded FRET sensors. eLife 2014; 3:e01741. [PMID: 24737862 PMCID: PMC3985517 DOI: 10.7554/elife.01741] [Citation(s) in RCA: 163] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
Cytosolic hormone levels must be tightly controlled at the level of influx, efflux, synthesis, degradation and compartmentation. To determine ABA dynamics at the single cell level, FRET sensors (ABACUS) covering a range ∼0.2–800 µM were engineered using structure-guided design and a high-throughput screening platform. When expressed in yeast, ABACUS1 detected concentrative ABA uptake mediated by the AIT1/NRT1.2 transporter. Arabidopsis roots expressing ABACUS1-2µ (Kd∼2 µM) and ABACUS1-80µ (Kd∼80 µM) respond to perfusion with ABA in a concentration-dependent manner. The properties of the observed ABA accumulation in roots appear incompatible with the activity of known ABA transporters (AIT1, ABCG40). ABACUS reveals effects of external ABA on homeostasis, that is, ABA-triggered induction of ABA degradation, modification, or compartmentation. ABACUS can be used to study ABA responses in mutants and quantitatively monitor ABA translocation and regulation, and identify missing components. The sensor screening platform promises to enable rapid fine-tuning of the ABA sensors and engineering of plant and animal hormone sensors to advance our understanding of hormone signaling. DOI:http://dx.doi.org/10.7554/eLife.01741.001 Plants are able to respond to detrimental changes in their environment—when, for example, water becomes scarce or the soil becomes too salty—in ways that minimize stress and damage caused by these changes. Hormones are chemicals that trigger the plant’s response under these circumstances. Abscisic acid is the hormone that regulates how plants respond to drought and salt stress, and also controls growth and development. In the past, it was possible to measure the average level of this hormone in a given tissue, but not the level in individual cells in a living plant, nor in specific compartments within a cell. Moreover, it was difficult to follow directly how abscisic acid moved between the plant cells, tissues or organs. Now, Jones et al. (and independently Waadt et al.) have developed tools that can measure the levels of abscisic acid within defined compartments of individual cells in living plants and in real time. The plants were genetically engineered to produce sensor proteins with two properties: they can bind to abscisic acid in a reversible manner, and they contain two ‘reporters’ that fluoresce at different wavelengths. Shining light onto the plant at a specific wavelength that is only absorbed by one of the reporters causes both of the reporters on the sensor proteins to fluoresce. However, the two reporters fluoresce differently when the sensor binds to abscisic acid. Specifically, one reporter fluoresces more and the other less. Hence, measuring the ratio of these two wavelengths in the light that is given off by the sensor proteins can be used as a measure of the concentration of abscisic acid in a plant cell. Jones et al. used a high-throughput platform to engineer five sensor proteins that detect abscisic acid over a wide range of concentrations. Using these ‘ABACUS’ sensors in living plants could track the uptake of abscisic acid into root cells, and revealed that the concentration of the hormone inside the cell stayed below the levels provided on the outside. Since known abscisic acid-transporters are capable of raising the hormone concentration inside a cell above that provided on the outside, abscisic acid transport into plant roots may occur via as-yet-undiscovered transporter proteins. Jones et al. also show that root cells rapidly eliminate abscisic acid, and that adding extra abscisic acid to the roots increases the rate of elimination within minutes. Plants were also engineered to target the sensor proteins specifically to the cell nucleus. In the future, targeting these sensors to the cell wall should allow tracking of the cell-to-cell movement of this hormone. Further aims include using ABACUS to track abscisic acid in plants undergoing stress, and to use the high-throughput platform to develop new sensors to track other hormones in living organisms (including animals). DOI:http://dx.doi.org/10.7554/eLife.01741.002
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Affiliation(s)
- Alexander M Jones
- Department of Plant Biology, Carnegie Institution for Science, Stanford, United States
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243
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Dinneny JR. A gateway with a guard: how the endodermis regulates growth through hormone signaling. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2014; 214:14-9. [PMID: 24268159 DOI: 10.1016/j.plantsci.2013.09.009] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2013] [Revised: 09/18/2013] [Accepted: 09/19/2013] [Indexed: 05/08/2023]
Abstract
The endodermis is a defining feature of plant roots and is most widely studied as a differentially permeable barrier limiting solute uptake from the soil into the vascular stream. Recent work has revealed that this inner cell layer is also an important signaling center for hormone-mediated control of growth. Auxin, gibberellic acid, abscisic acid and strigalactones all appear to depend on the endodermis to regulate root biology and point to this cell type as having important inter-cell layer regulatory activity, as well. In this review I discuss recent work detailing the importance of the endodermis in growth control and how this function is affected during responses to the environment.
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Affiliation(s)
- José R Dinneny
- Carnegie Institution for Science, Department of Plant Biology, Stanford, CA 94305, USA.
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244
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Iglesias MJ, Terrile MC, Windels D, Lombardo MC, Bartoli CG, Vazquez F, Estelle M, Casalongué CA. MiR393 regulation of auxin signaling and redox-related components during acclimation to salinity in Arabidopsis. PLoS One 2014. [PMID: 25222737 DOI: 10.137/journal.pone.0107678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2023] Open
Abstract
One of the most striking aspects of plant plasticity is the modulation of development in response to environmental changes. Plant growth and development largely depend on the phytohormone auxin that exerts its function through a partially redundant family of F-box receptors, the TIR1-AFBs. We have previously reported that the Arabidopsis double mutant tir1 afb2 is more tolerant to salt stress than wild-type plants and we hypothesized that down-regulation of auxin signaling might be part of Arabidopsis acclimation to salinity. In this work, we show that NaCl-mediated salt stress induces miR393 expression by enhancing the transcription of AtMIR393A and leads to a concomitant reduction in the levels of the TIR1 and AFB2 receptors. Consequently, NaCl triggers stabilization of Aux/IAA repressors leading to down-regulation of auxin signaling. Further, we report that miR393 is likely involved in repression of lateral root (LR) initiation, emergence and elongation during salinity, since the mir393ab mutant shows reduced inhibition of emergent and mature LR number and length upon NaCl-treatment. Additionally, mir393ab mutant plants have increased levels of reactive oxygen species (ROS) in LRs, and reduced ascorbate peroxidase (APX) enzymatic activity compared with wild-type plants during salinity. Thus, miR393 regulation of the TIR1 and AFB2 receptors could be a critical checkpoint between auxin signaling and specfic redox-associated components in order to coordinate tissue and time-specific growth responses and tolerance during acclimation to salinity in Arabidopsis.
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Affiliation(s)
- María José Iglesias
- Instituto de Investigaciones Biológicas, UE-CONICET-UNMDP, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, Mar del Plata, Argentina
| | - María Cecilia Terrile
- Instituto de Investigaciones Biológicas, UE-CONICET-UNMDP, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, Mar del Plata, Argentina
| | - David Windels
- Instituto de Fisiología Vegetal, Facultad de Ciencias Naturales, Universidad Nacional de La Plata-CCT La Plata CONICET, La Plata, Argentina
| | - María Cristina Lombardo
- Departamento de Biología e Instituto de Investigaciones Biológicas, UE-CONICET-UNMDP, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, Mar del Plata, Argentina
| | - Carlos Guillermo Bartoli
- Instituto de Fisiología Vegetal, Facultad de Ciencias Naturales, Universidad Nacional de La Plata-CCT La Plata CONICET, La Plata, Argentina
| | - Franck Vazquez
- Botanical Institute of the University of Basel, Zürich-Basel Plant Science Center, Part of the Swiss Plant Science Web, Department of Environmental Sciences, Basel, Switzerland
| | - Mark Estelle
- Section of Cell and Developmental Biology, University of California San Diego, San Diego, California, United States of America; Howard Hughes Medical Institute, University of California San Diego, San Diego, California, United States of America
| | - Claudia Anahí Casalongué
- Instituto de Investigaciones Biológicas, UE-CONICET-UNMDP, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, Mar del Plata, Argentina
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245
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Gibbs DJ, Coates JC. AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. PLANT SIGNALING & BEHAVIOR 2014; 9:e970406. [PMID: 25482809 PMCID: PMC4622915 DOI: 10.4161/15592316.2014.970406] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
Plant root systems are critical for survival, acting as the primary interface for nutrient and water acquisition, as well as anchoring the plant to the ground. As plants grow, their root systems become more elaborate, which is largely mediated by the formation of root branches, or lateral roots. Lateral roots initiate deep within the root in the pericycle cell layer, and their development is controlled by a wide range of internal signaling factors and environmental cues, as well as mechanical feedback from the surrounding cells. The endodermal cell layer, which overlies the pericycle, has emerged as an important tissue regulating LR initiation and formation. We recently identified the AtMYB93 transcription factor as a negative regulator of lateral root development in Arabidopsis. Interestingly, AtMYB93 expression is highly restricted to the few endodermal cells overlying developing lateral root primordia, suggesting that this transcriptional regulator might play a key role in mediating the effect of the endodermis on lateral root development. Here we discuss our recent findings in the wider context of root system development - with a particular focus on the role of the endodermis - and propose several potential models to explain AtMYB93 function during lateral root organogenesis.
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Affiliation(s)
- Daniel J Gibbs
- School of Biosciences; University of Birmingham; Edgbaston, UK
| | - Juliet C Coates
- School of Biosciences; University of Birmingham; Edgbaston, UK
- Correspondence to: Juliet C Coates;
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246
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Cuesta C, Wabnik K, Benková E. Systems approaches to study root architecture dynamics. FRONTIERS IN PLANT SCIENCE 2013; 4:537. [PMID: 24421783 PMCID: PMC3872734 DOI: 10.3389/fpls.2013.00537] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2013] [Accepted: 12/11/2013] [Indexed: 05/05/2023]
Abstract
The plant root system is essential for providing anchorage to the soil, supplying minerals and water, and synthesizing metabolites. It is a dynamic organ modulated by external cues such as environmental signals, water and nutrients availability, salinity and others. Lateral roots (LRs) are initiated from the primary root post-embryonically, after which they progress through discrete developmental stages which can be independently controlled, providing a high level of plasticity during root system formation. Within this review, main contributions are presented, from the classical forward genetic screens to the more recent high-throughput approaches, combined with computer model predictions, dissecting how LRs and thereby root system architecture is established and developed.
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Affiliation(s)
- Candela Cuesta
- Institute of Science and Technology AustriaKlosterneuburg, Austria
| | - Krzysztof Wabnik
- Department of Plant Systems Biology, Flanders Institute for Biotechnology (VIB) and Department of Plant Biotechnology and Genetics, Ghent UniversityTechnologiepark, Gent, Belgium
| | - Eva Benková
- Institute of Science and Technology AustriaKlosterneuburg, Austria
- Mendel Centre for Plant Genomics and Proteomics, Masaryk UniversityBrno, Czech Republic
- *Correspondence: Eva Benková, Institute of Science and Technology Austria, Am Campus 1, 3400 Klosterneuburg, Austria e-mail:
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247
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Roatti B, Perazzolli M, Gessler C, Pertot I. Abiotic stresses affect Trichoderma harzianum T39-induced resistance to downy mildew in grapevine. PHYTOPATHOLOGY 2013; 103:1227-34. [PMID: 23841621 DOI: 10.1094/phyto-02-13-0040-r] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Enhancement of plant defense through the application of resistance inducers seems a promising alternative to chemical fungicides for controlling crop diseases but the efficacy can be affected by abiotic factors in the field. Plants respond to abiotic stresses with hormonal signals that may interfere with the mechanisms of induced systemic resistance (ISR) to pathogens. In this study, we exposed grapevines to heat, drought, or both to investigate the effects of abiotic stresses on grapevine resistance induced by Trichoderma harzianum T39 (T39) to downy mildew. Whereas the efficacy of T39-induced resistance was not affected by exposure to heat or drought, it was significantly reduced by combined abiotic stresses. Decrease of leaf water potential and upregulation of heat-stress markers confirmed that plants reacted to abiotic stresses. Basal expression of defense-related genes and their upregulation during T39-induced resistance were attenuated by abiotic stresses, in agreement with the reduced efficacy of T39. The evidence reported here suggests that exposure of crops to abiotic stress should be carefully considered to optimize the use of resistance inducers, especially in view of future global climate changes. Expression analysis of ISR marker genes could be helpful to identify when plants are responding to abiotic stresses, in order to optimize treatments with resistance inducers in field.
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248
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Sripinyowanich S, Chamnanmanoontham N, Udomchalothorn T, Maneeprasopsuk S, Santawee P, Buaboocha T, Qu LJ, Gu H, Chadchawan S. Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2013; 213:67-78. [PMID: 24157209 DOI: 10.1016/j.plantsci.2013.08.013] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2013] [Revised: 08/12/2013] [Accepted: 08/30/2013] [Indexed: 05/08/2023]
Abstract
The rice (Oryza sativa L.) nucleolin gene, OsNUC1, transcripts were expressed in rice leaves, flowers, seeds and roots but differentially expressed within and between two pairs of salt-sensitive and salt-resistant rice lines when subjected to salt stress. Salt-resistant lines exhibited higher OsNUC1 transcript expression levels than salt-sensitive lines during 0.5% (w/v) NaCl salt stress for 6d. Two sizes of OsNUC1 full-length cDNA were found in the rice genome database and northern blot analysis confirmed their existence in rice tissues. The longer transcript (OsNUC1-L) putatively encodes for a protein with a serine rich N-terminal, RNA recognition motifs in the central domain and a glycine- and arginine-rich repeat in the C-terminal domain, while the shorter one (OsNUC1-S) putatively encodes for the similar protein without the N-terminus. Without salt stress, OsNUC1-L expressing Arabidopsis thaliana Atnuc1-L1 plants displayed a substantial but incomplete revertant phenotype, whereas OsNUC1-S expression only induced a weak effect. However, under 0.5% (w/v) NaCl salt stress they displayed a higher relative growth rate, longer root length and a lower H2O2 level than the wild type plants, suggesting a higher salt resistance. Moreover, they displayed elevated AtSOS1 and AtP5CS1 transcript levels. We propose that OsNUC1-S plays an important role in salt resistance during salt stress, a new role for nucleolin in plants.
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Affiliation(s)
- Siriporn Sripinyowanich
- Biological Sciences Program, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand; Environmental and Plant Physiology Research Unit, Department of Botany, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand
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Genes and co-expression modules common to drought and bacterial stress responses in Arabidopsis and rice. PLoS One 2013; 8:e77261. [PMID: 24130868 PMCID: PMC3795056 DOI: 10.1371/journal.pone.0077261] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2013] [Accepted: 08/30/2013] [Indexed: 12/13/2022] Open
Abstract
Plants are simultaneously exposed to multiple stresses resulting in enormous changes in the molecular landscape within the cell. Identification and characterization of the synergistic and antagonistic components of stress response mechanisms contributing to the cross talk between stresses is of high priority to explore and enhance multiple stress responses. To this end, we performed meta-analysis of drought (abiotic), bacterial (biotic) stress response in rice and Arabidopsis by analyzing a total of 386 microarray samples belonging to 20 microarray studies and identified approximately 3100 and 900 DEGs in rice and Arabidopsis, respectively. About 38.5% (1214) and 28.7% (272) DEGs were common to drought and bacterial stresses in rice and Arabidopsis, respectively. A majority of these common DEGs showed conserved expression status in both stresses. Gene ontology enrichment analysis clearly demarcated the response and regulation of various plant hormones and related biological processes. Fatty acid metabolism and biosynthesis of alkaloids were upregulated and, nitrogen metabolism and photosynthesis was downregulated in both stress conditions. WRKY transcription family genes were highly enriched in all upregulated gene sets while ‘CO-like’ TF family showed inverse relationship of expression between drought and bacterial stresses. Weighted gene co-expression network analysis divided DEG sets into multiple modules that show high co-expression and identified stress specific hub genes with high connectivity. Detection of consensus modules based on DEGs common to drought and bacterial stress revealed 9 and 4 modules in rice and Arabidopsis, respectively, with conserved and reversed co-expression patterns.
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Ding Z, De Smet I. Localised ABA signalling mediates root growth plasticity. TRENDS IN PLANT SCIENCE 2013; 18:533-5. [PMID: 24035235 PMCID: PMC3791404 DOI: 10.1016/j.tplants.2013.08.009] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2013] [Revised: 08/19/2013] [Accepted: 08/23/2013] [Indexed: 05/03/2023]
Abstract
Two recent reports show that cellular abscisic acid (ABA) signalling, together with other phytohormone signalling pathways, is crucial for salt-regulated root growth dynamics. Here we discuss these findings and place them in a broader framework on how cellular hormone signalling regulates root growth plasticity in response to environmental cues.
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Affiliation(s)
- Zhaojun Ding
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Sciences, Shandong University, Jinan, Shandong 250100, PR China
| | - Ive De Smet
- Department of Plant Systems Biology, VIB, Technologiepark 927, B-9052 Ghent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough, Leicestershire LE12 5RD, UK
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