1
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Petrikat RI, Hornbogen J, Schmitt MJP, Resmann E, Wiedemann C, Dilmen NI, Schneider H, Pick AM, Riehn C, Diller R, Becker S. A Photoswitchable Metallocycle Based on Azobenzene: Synthesis, Characterization, and Ultrafast Dynamics. Chemistry 2024; 30:e202400205. [PMID: 38526989 DOI: 10.1002/chem.202400205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Revised: 03/25/2024] [Accepted: 03/25/2024] [Indexed: 03/27/2024]
Abstract
The novel photoswitchable ligand 3,3'-Azobenz(metPA)2 (1) is used to prepare a [Cu2(1)2](BF4)2 metallocycle (2), whose photoisomerization was characterized using static and time-resolved spectroscopic methods. Optical studies demonstrate the highly quantitative and reproducible photoinduced cyclic E/Z switching without decay of the complex. Accordingly and best to our knowledge, [Cu2(1)2](BF4)2 constitutes the first reversibly photoswitchable (3d)-metallocycle based on azobenzene. The photoinduced multiexponential dynamics in the sub-picosecond to few picosecond time domain of 1 and 2 have been assessed. These ultrafast dynamics as well as the yield of the respective photostationary state (PSSZ = 65 %) resemble the behavior of archetypical azobenzene. Also, the innovative pump-probe laser technique of gas phase transient photodissociation (τ-PD) in a mass spectrometric ion trap was used to determine the intrinsic relaxation dynamics for the isolated complex. These results are consistent with the results from femtosecond UV/Vis transient absorption (fs-TA) in solution, emphasizing the azobenzene-like dynamics of 2. This unique combination of fs-TA and τ-PD enables valuable insights into the prevailing interplay of dynamics and solvation. Both analyses (in solution and gas phase) and quantum chemical calculations reveal a negligible effect of the metal coordination on the switching mechanism and electronic pathway, which suggests a non-cooperative isomerization process.
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Affiliation(s)
- Raphael I Petrikat
- Fachbereich Chemie, RPTU Kaiserslautern-Landau, Erwin-Schrödinger-Straße 52-54, 67663, Kaiserslautern, Germany
| | - Justin Hornbogen
- Fachbereich Physik, RPTU Kaiserslautern-Landau, Erwin-Schrödinger-Straße 46, 67663, Kaiserslautern, Germany
| | - Marcel J P Schmitt
- Fachbereich Chemie, RPTU Kaiserslautern-Landau, Erwin-Schrödinger-Straße 52-54, 67663, Kaiserslautern, Germany
| | - Emma Resmann
- Fachbereich Physik, RPTU Kaiserslautern-Landau, Erwin-Schrödinger-Straße 46, 67663, Kaiserslautern, Germany
| | - Christina Wiedemann
- Fachbereich Chemie, RPTU Kaiserslautern-Landau, Erwin-Schrödinger-Straße 52-54, 67663, Kaiserslautern, Germany
| | - Nesrin I Dilmen
- Fachbereich Chemie, RPTU Kaiserslautern-Landau, Erwin-Schrödinger-Straße 52-54, 67663, Kaiserslautern, Germany
| | - Heinrich Schneider
- Fachbereich Chemie, RPTU Kaiserslautern-Landau, Erwin-Schrödinger-Straße 52-54, 67663, Kaiserslautern, Germany
| | - Annika M Pick
- Fachbereich Chemie, RPTU Kaiserslautern-Landau, Erwin-Schrödinger-Straße 52-54, 67663, Kaiserslautern, Germany
| | - Christoph Riehn
- Fachbereich Chemie, RPTU Kaiserslautern-Landau, Erwin-Schrödinger-Straße 52-54, 67663, Kaiserslautern, Germany
- Research Center OPTIMAS, RPTU Kaiserslautern-Landau, Erwin-Schrödinger-Straße 46, 67663, Kaiserslautern, Germany
| | - Rolf Diller
- Fachbereich Physik, RPTU Kaiserslautern-Landau, Erwin-Schrödinger-Straße 46, 67663, Kaiserslautern, Germany
| | - Sabine Becker
- Fachbereich Chemie, RPTU Kaiserslautern-Landau, Erwin-Schrödinger-Straße 52-54, 67663, Kaiserslautern, Germany
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2
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Aleotti F, Petropoulos V, Van Overeem H, Pettini M, Mancinelli M, Pecorari D, Maiuri M, Medri R, Mazzanti A, Preda F, Perri A, Polli D, Conti I, Cerullo G, Garavelli M. Engineering Azobenzene Derivatives to Control the Photoisomerization Process. J Phys Chem A 2023; 127:10435-10449. [PMID: 38051114 PMCID: PMC10726365 DOI: 10.1021/acs.jpca.3c06108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Revised: 11/03/2023] [Accepted: 11/06/2023] [Indexed: 12/07/2023]
Abstract
In this work, we show how the structural features of photoactive azobenzene derivatives can influence the photoexcited state behavior and the yield of the trans/cis photoisomerization process. By combining high-resolution transient absorption experiments in the vis-NIR region and quantum chemistry calculations (TDDFT and RASPT2), we address the origin of the transient signals of three poly-substituted push-pull azobenzenes with an increasing strength of the intramolecular interactions stabilizing the planar trans isomer (absence of intramolecular H-bonds, methyl, and traditional H-bond, respectively, for 4-diethyl-4'-nitroazobenzene, Disperse Blue 366, and Disperse Blue 165) and a commercial red dye showing keto-enol tautomerism involving the azo group (Sudan Red G). Our results indicate that the intramolecular H-bonds can act as a "molecular lock" stabilizing the trans isomer and increasing the energy barrier along the photoreactive CNNC torsion coordinate, thus preventing photoisomerization in the Disperse Blue dyes. In contrast, the involvement of the azo group in keto-enol tautomerism can be employed as a strategy to change the nature of the lower excited state and remove the nonproductive symmetric CNN/NNC bending pathway typical of the azo group, thus favoring the productive torsional motion. Taken together, our results can provide guidelines for the structural design of azobenzene-based photoswitches with a tunable excited state behavior.
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Affiliation(s)
- Flavia Aleotti
- Dipartimento
di Chimica Industriale “Toso Montanari”, Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Vasilis Petropoulos
- Dipartimento
di Fisica - Politecnico di Milano, Piazza Leonardo da Vinci 32, Milano 20133, Italy
| | - Hannah Van Overeem
- van’t
Hoff Institute for Molecular Sciences, Universiteit
van Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Michele Pettini
- Dipartimento
di Chimica “Giacomo Ciamician”, Università di Bologna, Via F. Selmi 2, 40126 Bologna, Italy
| | - Michele Mancinelli
- Dipartimento
di Chimica Industriale “Toso Montanari”, Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Daniel Pecorari
- Dipartimento
di Chimica Industriale “Toso Montanari”, Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Margherita Maiuri
- Dipartimento
di Fisica - Politecnico di Milano, Piazza Leonardo da Vinci 32, Milano 20133, Italy
| | - Riccardo Medri
- Dipartimento
di Chimica Industriale “Toso Montanari”, Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Andrea Mazzanti
- Dipartimento
di Chimica Industriale “Toso Montanari”, Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Fabrizio Preda
- NIREOS
s.r.l, Via Giovanni Durando
39, 20158 Milan, Italy
| | - Antonio Perri
- NIREOS
s.r.l, Via Giovanni Durando
39, 20158 Milan, Italy
| | - Dario Polli
- Dipartimento
di Fisica - Politecnico di Milano, Piazza Leonardo da Vinci 32, Milano 20133, Italy
- CNR - Institute
for Photonics and Nanotechnologies (IFN), Piazza Leonardo da Vinci 32, 20133 Milan, Italy
| | - Irene Conti
- Dipartimento
di Chimica Industriale “Toso Montanari”, Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Giulio Cerullo
- Dipartimento
di Fisica - Politecnico di Milano, Piazza Leonardo da Vinci 32, Milano 20133, Italy
- CNR - Institute
for Photonics and Nanotechnologies (IFN), Piazza Leonardo da Vinci 32, 20133 Milan, Italy
| | - Marco Garavelli
- Dipartimento
di Chimica Industriale “Toso Montanari”, Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
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3
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Li Manni G, Fdez. Galván I, Alavi A, Aleotti F, Aquilante F, Autschbach J, Avagliano D, Baiardi A, Bao JJ, Battaglia S, Birnoschi L, Blanco-González A, Bokarev SI, Broer R, Cacciari R, Calio PB, Carlson RK, Carvalho Couto R, Cerdán L, Chibotaru LF, Chilton NF, Church JR, Conti I, Coriani S, Cuéllar-Zuquin J, Daoud RE, Dattani N, Decleva P, de Graaf C, Delcey M, De Vico L, Dobrautz W, Dong SS, Feng R, Ferré N, Filatov(Gulak) M, Gagliardi L, Garavelli M, González L, Guan Y, Guo M, Hennefarth MR, Hermes MR, Hoyer CE, Huix-Rotllant M, Jaiswal VK, Kaiser A, Kaliakin DS, Khamesian M, King DS, Kochetov V, Krośnicki M, Kumaar AA, Larsson ED, Lehtola S, Lepetit MB, Lischka H, López Ríos P, Lundberg M, Ma D, Mai S, Marquetand P, Merritt ICD, Montorsi F, Mörchen M, Nenov A, Nguyen VHA, Nishimoto Y, Oakley MS, Olivucci M, Oppel M, Padula D, Pandharkar R, Phung QM, Plasser F, Raggi G, Rebolini E, Reiher M, Rivalta I, Roca-Sanjuán D, Romig T, Safari AA, Sánchez-Mansilla A, Sand AM, Schapiro I, Scott TR, Segarra-Martí J, Segatta F, Sergentu DC, Sharma P, Shepard R, Shu Y, Staab JK, Straatsma TP, Sørensen LK, Tenorio BNC, Truhlar DG, Ungur L, Vacher M, Veryazov V, Voß TA, Weser O, Wu D, Yang X, Yarkony D, Zhou C, Zobel JP, Lindh R. The OpenMolcas Web: A Community-Driven Approach to Advancing Computational Chemistry. J Chem Theory Comput 2023; 19:6933-6991. [PMID: 37216210 PMCID: PMC10601490 DOI: 10.1021/acs.jctc.3c00182] [Citation(s) in RCA: 42] [Impact Index Per Article: 42.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Indexed: 05/24/2023]
Abstract
The developments of the open-source OpenMolcas chemistry software environment since spring 2020 are described, with a focus on novel functionalities accessible in the stable branch of the package or via interfaces with other packages. These developments span a wide range of topics in computational chemistry and are presented in thematic sections: electronic structure theory, electronic spectroscopy simulations, analytic gradients and molecular structure optimizations, ab initio molecular dynamics, and other new features. This report offers an overview of the chemical phenomena and processes OpenMolcas can address, while showing that OpenMolcas is an attractive platform for state-of-the-art atomistic computer simulations.
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Affiliation(s)
- Giovanni Li Manni
- Electronic
Structure Theory Department, Max Planck
Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
| | - Ignacio Fdez. Galván
- Department
of Chemistry − BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
| | - Ali Alavi
- Electronic
Structure Theory Department, Max Planck
Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
- Yusuf Hamied
Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - Flavia Aleotti
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Francesco Aquilante
- Theory and
Simulation of Materials (THEOS) and National Centre for Computational
Design and Discovery of Novel Materials (MARVEL), École Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Jochen Autschbach
- Department
of Chemistry, University at Buffalo, State
University of New York, Buffalo, New York 14260-3000, United States
| | - Davide Avagliano
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Alberto Baiardi
- ETH Zurich, Laboratory for Physical Chemistry, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Jie J. Bao
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Stefano Battaglia
- Department
of Chemistry − BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
| | - Letitia Birnoschi
- The Department
of Chemistry, The University of Manchester, M13 9PL, Manchester, U.K.
| | - Alejandro Blanco-González
- Chemistry
Department, Bowling Green State University, Overmann Hall, Bowling Green, Ohio 43403, United States
| | - Sergey I. Bokarev
- Institut
für Physik, Universität Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
- Chemistry
Department, School of Natural Sciences, Technical University of Munich, Lichtenbergstr. 4, 85748 Garching, Germany
| | - Ria Broer
- Theoretical
Chemistry, Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747AG Groningen, The Netherlands
| | - Roberto Cacciari
- Dipartimento
di Biotecnologie, Chimica e Farmacia, Università
di Siena, Via A. Moro 2, 53100 Siena, Italy
| | - Paul B. Calio
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Rebecca K. Carlson
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Rafael Carvalho Couto
- Division
of Theoretical Chemistry and Biology, School of Engineering Sciences
in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - Luis Cerdán
- Instituto
de Ciencia Molecular, Universitat de València, Catedrático José Beltrán
Martínez n. 2, 46980 Paterna, Spain
- Instituto
de Óptica (IO−CSIC), Consejo
Superior de Investigaciones Científicas, 28006, Madrid, Spain
| | - Liviu F. Chibotaru
- Department
of Chemistry, KU Leuven, Celestijnenlaan 200F, 3001 Leuven, Belgium
| | - Nicholas F. Chilton
- The Department
of Chemistry, The University of Manchester, M13 9PL, Manchester, U.K.
| | | | - Irene Conti
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Sonia Coriani
- Department
of Chemistry, Technical University of Denmark, Kemitorvet Bldg 207, 2800 Kongens Lyngby, Denmark
| | - Juliana Cuéllar-Zuquin
- Instituto
de Ciencia Molecular, Universitat de València, Catedrático José Beltrán
Martínez n. 2, 46980 Paterna, Spain
| | - Razan E. Daoud
- Dipartimento
di Biotecnologie, Chimica e Farmacia, Università
di Siena, Via A. Moro 2, 53100 Siena, Italy
| | - Nike Dattani
- HPQC Labs, Waterloo, N2T 2K9 Ontario Canada
- HPQC College, Waterloo, N2T 2K9 Ontario Canada
| | - Piero Decleva
- Istituto
Officina dei Materiali IOM-CNR and Dipartimento di Scienze Chimiche
e Farmaceutiche, Università degli
Studi di Trieste, I-34121 Trieste, Italy
| | - Coen de Graaf
- Department
of Physical and Inorganic Chemistry, Universitat
Rovira i Virgili, Tarragona 43007, Spain
- ICREA, Pg. Lluís
Companys 23, 08010 Barcelona, Spain
| | - Mickaël
G. Delcey
- Division
of Theoretical Chemistry and Biology, School of Engineering Sciences
in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, SE-106 91 Stockholm, Sweden
| | - Luca De Vico
- Dipartimento
di Biotecnologie, Chimica e Farmacia, Università
di Siena, Via A. Moro 2, 53100 Siena, Italy
| | - Werner Dobrautz
- Chalmers
University of Technology, Department of Chemistry
and Chemical Engineering, 41296 Gothenburg, Sweden
| | - Sijia S. Dong
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry and Chemical Biology, Department of Physics, and Department
of Chemical Engineering, Northeastern University, Boston, Massachusetts 02115, United States
| | - Rulin Feng
- Department
of Chemistry, University at Buffalo, State
University of New York, Buffalo, New York 14260-3000, United States
- Department
of Chemistry, Fudan University, Shanghai 200433, China
| | - Nicolas Ferré
- Institut
de Chimie Radicalaire (UMR-7273), Aix-Marseille
Univ, CNRS, ICR 13013 Marseille, France
| | | | - Laura Gagliardi
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Marco Garavelli
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Leticia González
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | - Yafu Guan
- State Key
Laboratory of Molecular Reaction Dynamics and Center for Theoretical
Computational Chemistry, Dalian Institute
of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, People’s Republic of China
| | - Meiyuan Guo
- SSRL, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Matthew R. Hennefarth
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Matthew R. Hermes
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Chad E. Hoyer
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Miquel Huix-Rotllant
- Institut
de Chimie Radicalaire (UMR-7273), Aix-Marseille
Univ, CNRS, ICR 13013 Marseille, France
| | - Vishal Kumar Jaiswal
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Andy Kaiser
- Institut
für Physik, Universität Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
| | - Danil S. Kaliakin
- Chemistry
Department, Bowling Green State University, Overmann Hall, Bowling Green, Ohio 43403, United States
| | - Marjan Khamesian
- Department
of Chemistry − BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
| | - Daniel S. King
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Vladislav Kochetov
- Institut
für Physik, Universität Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
| | - Marek Krośnicki
- Institute
of Theoretical Physics and Astrophysics, Faculty of Mathematics, Physics
and Informatics, University of Gdańsk, ul Wita Stwosza 57, 80-952, Gdańsk, Poland
| | | | - Ernst D. Larsson
- Division
of Theoretical Chemistry, Chemical Centre, Lund University, P.O. Box 124, SE-22100, Lund, Sweden
| | - Susi Lehtola
- Molecular
Sciences Software Institute, Blacksburg, Virginia 24061, United States
- Department
of Chemistry, University of Helsinki, P.O. Box 55, FI-00014 University of Helsinki, Finland
| | - Marie-Bernadette Lepetit
- Condensed
Matter Theory Group, Institut Néel, CNRS UPR 2940, 38042 Grenoble, France
- Theory
Group, Institut Laue Langevin, 38042 Grenoble, France
| | - Hans Lischka
- Department
of Chemistry and Biochemistry, Texas Tech
University, Lubbock, Texas 79409-1061, United States
| | - Pablo López Ríos
- Electronic
Structure Theory Department, Max Planck
Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
| | - Marcus Lundberg
- Department
of Chemistry − Ångström Laboratory, Uppsala University, SE-75120 Uppsala, Sweden
| | - Dongxia Ma
- Electronic
Structure Theory Department, Max Planck
Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Sebastian Mai
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | - Philipp Marquetand
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | | | - Francesco Montorsi
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Maximilian Mörchen
- ETH Zurich, Laboratory for Physical Chemistry, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Artur Nenov
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Vu Ha Anh Nguyen
- Department
of Chemistry, National University of Singapore, 3 Science Drive 3, 117543 Singapore
| | - Yoshio Nishimoto
- Graduate
School of Science, Kyoto University, Kyoto 606-8502, Japan
| | - Meagan S. Oakley
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Massimo Olivucci
- Chemistry
Department, Bowling Green State University, Overmann Hall, Bowling Green, Ohio 43403, United States
- Dipartimento
di Biotecnologie, Chimica e Farmacia, Università
di Siena, Via A. Moro 2, 53100 Siena, Italy
| | - Markus Oppel
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | - Daniele Padula
- Dipartimento
di Biotecnologie, Chimica e Farmacia, Università
di Siena, Via A. Moro 2, 53100 Siena, Italy
| | - Riddhish Pandharkar
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - Quan Manh Phung
- Department
of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan
- Institute
of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8601, Japan
| | - Felix Plasser
- Department
of Chemistry, Loughborough University, Loughborough, LE11 3TU, U.K.
| | - Gerardo Raggi
- Department
of Chemistry − BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
- Quantum
Materials and Software LTD, 128 City Road, London, EC1V 2NX, United Kingdom
| | - Elisa Rebolini
- Scientific
Computing Group, Institut Laue Langevin, 38042 Grenoble, France
| | - Markus Reiher
- ETH Zurich, Laboratory for Physical Chemistry, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
| | - Ivan Rivalta
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Daniel Roca-Sanjuán
- Instituto
de Ciencia Molecular, Universitat de València, Catedrático José Beltrán
Martínez n. 2, 46980 Paterna, Spain
| | - Thies Romig
- Institut
für Physik, Universität Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
| | - Arta Anushirwan Safari
- Electronic
Structure Theory Department, Max Planck
Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
| | - Aitor Sánchez-Mansilla
- Department
of Physical and Inorganic Chemistry, Universitat
Rovira i Virgili, Tarragona 43007, Spain
| | - Andrew M. Sand
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry and Biochemistry, Butler University, Indianapolis, Indiana 46208, United States
| | - Igor Schapiro
- Institute
of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel
| | - Thais R. Scott
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
- Department
of Chemistry, Pritzker School of Molecular Engineering, James Franck
Institute, Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
- Department
of Chemistry, University of California, Irvine, California 92697, United States
| | - Javier Segarra-Martí
- Instituto
de Ciencia Molecular, Universitat de València, Catedrático José Beltrán
Martínez n. 2, 46980 Paterna, Spain
| | - Francesco Segatta
- Department
of Industrial Chemistry “Toso Montanari”, University of Bologna, 40136 Bologna, Italy
| | - Dumitru-Claudiu Sergentu
- Department
of Chemistry, University at Buffalo, State
University of New York, Buffalo, New York 14260-3000, United States
- Laboratory
RA-03, RECENT AIR, A. I. Cuza University of Iaşi, RA-03 Laboratory (RECENT AIR), Iaşi 700506, Romania
| | - Prachi Sharma
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Ron Shepard
- Chemical
Sciences and Engineering Division, Argonne
National Laboratory, Lemont, Illinois 60439, USA
| | - Yinan Shu
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Jakob K. Staab
- The Department
of Chemistry, The University of Manchester, M13 9PL, Manchester, U.K.
| | - Tjerk P. Straatsma
- National
Center for Computational Sciences, Oak Ridge
National Laboratory, Oak Ridge, Tennessee 37831-6373, United States
- Department
of Chemistry and Biochemistry, University
of Alabama, Tuscaloosa, Alabama 35487-0336, United States
| | | | - Bruno Nunes Cabral Tenorio
- Department
of Chemistry, Technical University of Denmark, Kemitorvet Bldg 207, 2800 Kongens Lyngby, Denmark
| | - Donald G. Truhlar
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Liviu Ungur
- Department
of Chemistry, National University of Singapore, 3 Science Drive 3, 117543 Singapore
| | - Morgane Vacher
- Nantes
Université, CNRS, CEISAM, UMR 6230, F-44000 Nantes, France
| | - Valera Veryazov
- Division
of Theoretical Chemistry, Chemical Centre, Lund University, P.O. Box 124, SE-22100, Lund, Sweden
| | - Torben Arne Voß
- Institut
für Physik, Universität Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
| | - Oskar Weser
- Electronic
Structure Theory Department, Max Planck
Institute for Solid State Research, Heisenbergstraße 1, 70569 Stuttgart, Germany
| | - Dihua Wu
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - Xuchun Yang
- Chemistry
Department, Bowling Green State University, Overmann Hall, Bowling Green, Ohio 43403, United States
| | - David Yarkony
- Department
of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Chen Zhou
- Department
of Chemistry, Chemical Theory Center, and Minnesota Supercomputing
Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United
States
| | - J. Patrick Zobel
- Institute
of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, A-1090 Vienna, Austria
| | - Roland Lindh
- Department
of Chemistry − BMC, Uppsala University, P.O. Box 576, SE-75123 Uppsala, Sweden
- Uppsala
Center for Computational Chemistry (UC3), Uppsala University, PO Box 576, SE-751 23 Uppsala. Sweden
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4
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Sisodiya DS, Ali SM, Chattopadhyay A. Unexplored Isomerization Pathways of Azobis(benzo-15-crown-5): Computational Studies on a Butterfly Crown Ether. J Phys Chem A 2023; 127:7080-7093. [PMID: 37526572 DOI: 10.1021/acs.jpca.3c02363] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/02/2023]
Abstract
Computational studies on trans → cis and cis → trans isomerizations of photoresponsive azobis(benzo-15-crown-5) have been reported in this work. The photoexcited ππ* state (S2) of the trans isomer relaxes through the planar S2 minimum and the planar S2/S1 conical intersection (both situated around 9 kcal/mol below the vertically excited S2 state) arising along the N═N stretching coordinate. The nπ* state (S1) of this isomer has both planar and rotated (clockwise and anticlockwise) minima, which may lead to a torsional conical intersection (S0/S1) geometry having a
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Affiliation(s)
- Dilawar Singh Sisodiya
- Department of Chemistry, Birla Institute of Technology and Science (BITS), Pilani, K.K. Birla Goa Campus, Zuarinagar 403726, India
| | - Sk Musharaf Ali
- Chemical Engineering Division, Bhabha Atomic Research Centre (BARC), Mumbai 400085, India
| | - Anjan Chattopadhyay
- Department of Chemistry, Birla Institute of Technology and Science (BITS), Pilani, K.K. Birla Goa Campus, Zuarinagar 403726, India
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5
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Titov E, Beqiraj A. Exciton States of Azobenzene Aggregates: A First‐Principles Study. ADVANCED THEORY AND SIMULATIONS 2023. [DOI: 10.1002/adts.202200907] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/22/2023]
Affiliation(s)
- Evgenii Titov
- University of Potsdam, Institute of Chemistry, Theoretical Chemistry Karl‐Liebknecht‐Straße 24‐25 14476 Potsdam Germany
| | - Alkit Beqiraj
- University of Potsdam, Institute of Chemistry, Theoretical Chemistry Karl‐Liebknecht‐Straße 24‐25 14476 Potsdam Germany
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6
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Osella S, Granucci G, Persico M, Knippenberg S. Dual photoisomerization mechanism of azobenzene embedded in a lipid membrane. J Mater Chem B 2023; 11:2518-2529. [PMID: 36852914 DOI: 10.1039/d2tb02767d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/01/2023]
Abstract
The photoisomerization of chromophores embedded in biological environments is of high importance for biomedical applications, but it is still challenging to define the photoisomerization mechanism both experimentally and computationally. We present here a computational study of the azobenzene molecule embedded in a DPPC lipid membrane, and assess the photoisomerization mechanism by means of the quantum mechanics/molecular mechanics surface hopping (QM/MM-SH) method. We observe that while the trans-to-cis isomerization is a slow process governed by a torsional mechanism due to the strong interaction with the environment, the cis-to-trans mechanism is completed in sub-ps time scale and is governed by a pedal-like mechanism in which both weaker interactions with the environment and a different geometry of the potential energy surface play a key role.
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Affiliation(s)
- Silvio Osella
- Chemical and Biological Systems Simulation Lab, Centre of New Technologies, University of Warsaw, Banacha 2C, 02-097 Warsaw, Poland. .,Materials and Process Simulation Center (MSC), California Institute of Technology, MC 139-74, Pasadena, CA, 91125, USA
| | - Giovanni Granucci
- Dipartimento di Chimica e Chimica Industriale, Universitá di Pisa, v. Moruzzi 13, I-56124 Pisa, Italy
| | - Maurizio Persico
- Dipartimento di Chimica e Chimica Industriale, Universitá di Pisa, v. Moruzzi 13, I-56124 Pisa, Italy
| | - Stefan Knippenberg
- Hasselt University, Theory Lab, Agoralaan Building D, 3590 Diepenbeek, Belgium.,Université Libre de Bruxelles, Spectroscopy, Quantum Chemistry and Atmospheric Remote Sensing (SQUARES), 50 Avenue F. Roosevelt, C.P. 160/09, B-1050 Brussels, Belgium.
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7
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Axelrod S, Shakhnovich E, Gómez-Bombarelli R. Thermal Half-Lives of Azobenzene Derivatives: Virtual Screening Based on Intersystem Crossing Using a Machine Learning Potential. ACS CENTRAL SCIENCE 2023; 9:166-176. [PMID: 36844486 PMCID: PMC9951306 DOI: 10.1021/acscentsci.2c00897] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Indexed: 05/27/2023]
Abstract
Molecular photoswitches are the foundation of light-activated drugs. A key photoswitch is azobenzene, which exhibits trans-cis isomerism in response to light. The thermal half-life of the cis isomer is of crucial importance, since it controls the duration of the light-induced biological effect. Here we introduce a computational tool for predicting the thermal half-lives of azobenzene derivatives. Our automated approach uses a fast and accurate machine learning potential trained on quantum chemistry data. Building on well-established earlier evidence, we argue that thermal isomerization proceeds through rotation mediated by intersystem crossing, and incorporate this mechanism into our automated workflow. We use our approach to predict the thermal half-lives of 19,000 azobenzene derivatives. We explore trends and trade-offs between barriers and absorption wavelengths, and open-source our data and software to accelerate research in photopharmacology.
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Affiliation(s)
- Simon Axelrod
- Department
of Chemistry and Chemical Biology, Harvard
University, Cambridge, Massachusetts02138, United States
- Department
of Materials Science and Engineering, Massachusetts
Institute of Technology, Cambridge, Massachusetts02139, United States
| | - Eugene Shakhnovich
- Department
of Chemistry and Chemical Biology, Harvard
University, Cambridge, Massachusetts02138, United States
| | - Rafael Gómez-Bombarelli
- Department
of Materials Science and Engineering, Massachusetts
Institute of Technology, Cambridge, Massachusetts02139, United States
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8
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Kempfer-Robertson EM, Avdic I, Haase MN, Pike TD, Thompson LM. Protonation state control of electric field induced molecular switching mechanisms. Phys Chem Chem Phys 2023; 25:5251-5261. [PMID: 36723228 DOI: 10.1039/d2cp04494c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Scanning tunneling microscopy tip-induced deprotonation has been demonstrated experimentally and can be used as an additional control mechanism in electric-field induced molecular switching. The goal of the current work is to establish whether (de)protonation can be used to inhibit or enhance the electric field controlled thermal and photoisomerization processes. Dihydroxyazobenzene is used as a model system, where protonation/deprotonation of the free hydroxyl moiety changes the azo bond order, and so modifies the rate of electric field induced isomerization. Through the combined action of deprotonation and applied field, it was found that the cis-to-trans thermal isomerization barrier could be completely removed, changing the isomerization half-life from the order of several months. In addition, due to the presence of multiple isomerization mechanisms, electric fields could modify the isomerization kinetics by increasing the number of energetically viable isomerization pathways, rather than reducing the activation barrier of the lowest energy pathway. Excited state calculations indicated that the protonation state and electric field could be used together to control the presence of electronic degeneracies along the rotation pathway between S0/S1, and along all three pathways between S1/S2. This work provides insight into the mechanisms that enable the use of protonation state, light, and electric fields in concert to control molecular switches.
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Affiliation(s)
| | - Irma Avdic
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40208, USA.
| | - Meagan N Haase
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40208, USA.
| | - Thomas Dane Pike
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40208, USA.
| | - Lee M Thompson
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40208, USA.
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9
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Airinei A, Isac DL, Fifere N, Maftei D, Rusu E. Computational and experimental investigation of photoresponsive behavior of 4,4′-dihydroxyazobenzene diglycidyl ether. RESULTS IN CHEMISTRY 2023. [DOI: 10.1016/j.rechem.2022.100709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
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10
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Obloy LM, El-Khoury PZ, Tarnovsky AN. Excited-State-Selective Ultrafast Relaxation Dynamics and Photoisomerization of trans-4,4'-Azopyridine. J Phys Chem Lett 2022; 13:10863-10870. [PMID: 36384033 DOI: 10.1021/acs.jpclett.2c02523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Excited-state dynamics of trans-4,4'-azopyridine in ethanol is studied using femtosecond transient absorption with 30 fs temporal resolution. Exciting the system at three different wavelengths, 460 and 290 (275) nm, to access the S1 nπ* and S2 ππ* electronic states, respectively, reveals a 195 cm-1 vibrational coherence, which suggests that the same mode is active in both nπ* and ππ* relaxation channels. Following S1-excitation, relaxation proceeds via a nonrotational pathway, where a fraction of the nπ* population is trapped in a planar minimum (lifetime, 2.1 ps), while the remaining population travels further to a second shallow minimum (lifetime, 300 fs) prior to decay into the ground state. Population of the S2 state leads to 30 fs nonrotational relaxation with a concurrent buildup of nπ* population and nearly simultaneous formation of hot ground-state species. An increase in the cis-isomer quantum yield upon ππ* versus nπ* excitation is observed, which is opposite to trans-azobenzene.
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Affiliation(s)
- Laura M Obloy
- Department of Chemistry and the Center for Photochemical Sciences, Bowling Green State University, Bowling Green, Ohio 43403, United States
| | - Patrick Z El-Khoury
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Alexander N Tarnovsky
- Department of Chemistry and the Center for Photochemical Sciences, Bowling Green State University, Bowling Green, Ohio 43403, United States
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11
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Liao W, Liao Q, Xiong Y, Li Z, Tang H. Design, synthesis and properties of carbazole-indenedione based photobleachable photoinitiators for photopolymerization. J Photochem Photobiol A Chem 2022. [DOI: 10.1016/j.jphotochem.2022.114297] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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12
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Doronina EP, Jouikov V, Sidorkin VF. Molecular Design of Silicon‐Containing Diazenes: Absorbance of
E
and
Z
Isomers in the Near‐Infrared Region. Chemistry 2022; 28:e202201508. [DOI: 10.1002/chem.202201508] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2022] [Indexed: 11/11/2022]
Affiliation(s)
- Evgeniya P. Doronina
- A. E. Favorsky Irkutsk Institute of Chemistry Siberian Branch of the Russian Academy of Sciences 1 Favorsky st. 664033 Irkutsk Russian Federation
| | | | - Valery F. Sidorkin
- A. E. Favorsky Irkutsk Institute of Chemistry Siberian Branch of the Russian Academy of Sciences 1 Favorsky st. 664033 Irkutsk Russian Federation
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13
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Al‐Bataineh QM, Telfah A, Ahlmann N, Tolstik E, Tavares CJ, Hergenröder R. Photoisomerization kinetics of a novel photoswitchable film based on methyl red doped with sodium hexachloroplatinate hosted in polyethylene oxide. J Appl Polym Sci 2022. [DOI: 10.1002/app.52387] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Qais M. Al‐Bataineh
- Leibniz Institut für Analytische Wissenschaften‐ISAS‐e.V Dortmund Germany
- Department of Physics Jordan University of Science & Technology Irbid Jordan
| | - Ahmad Telfah
- Leibniz Institut für Analytische Wissenschaften‐ISAS‐e.V Dortmund Germany
| | - Norman Ahlmann
- Leibniz Institut für Analytische Wissenschaften‐ISAS‐e.V Dortmund Germany
| | - Elen Tolstik
- Leibniz Institut für Analytische Wissenschaften‐ISAS‐e.V Dortmund Germany
| | - Carlos J. Tavares
- Physics Center of Minho and Porto Universities (CF‐UM‐PT) Guimarães Portugal
| | - Roland Hergenröder
- Leibniz Institut für Analytische Wissenschaften‐ISAS‐e.V Dortmund Germany
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14
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Herrera F, Litinskaya M. Disordered ensembles of strongly coupled single-molecule plasmonic picocavities as nonlinear optical metamaterials. J Chem Phys 2022; 156:114702. [DOI: 10.1063/5.0080063] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We propose to use molecular picocavity ensembles as macroscopic coherent nonlinear optical devices enabled by nanoscale strong coupling. For a generic picocavity model that includes molecular and photonic disorder, we derive theoretical performance bounds for coherent cross-phase modulation signals using weak classical fields of different frequencies. We show that strong coupling of the picocavity vacua with a specific vibronic sideband in the molecular emission spectrum results in a significant variation of the effective refractive index of the metamaterial relative to a molecule-free scenario due to a vacuum-induced Autler–Townes effect. For a realistic molecular disorder model, we demonstrate that cross-phase modulation of optical fields as weak as 10 kW/cm2 is feasible using dilute ensembles of molecular picocavities at room temperature, provided that the confined vacuum is not resonantly driven by the external probe field. Our work paves the way for the development of plasmonic metamaterials that exploit strong coupling for optical state preparation and quantum control.
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Affiliation(s)
- Felipe Herrera
- Department of Physics, Universidad de Santiago de Chile, Av. Ecuador, 3493 Santiago, Chile
- ANID-Millennium Institute for Research in Optics, Concepción, Chile
| | - Marina Litinskaya
- Department of Physics & Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
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15
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Schnack-Petersen AK, Pápai M, Møller KB. Azobenzene photoisomerization dynamics: Revealing the key degrees of freedom and the long timescale of the trans-to-cis process. J Photochem Photobiol A Chem 2022. [DOI: 10.1016/j.jphotochem.2022.113869] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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16
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Isomer-selective dative bond O→M (M = Si, Ge) for designing new photochromic hemi-indigo systems. J Organomet Chem 2022. [DOI: 10.1016/j.jorganchem.2021.122189] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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17
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Abstract
Azobenzenes are archetypal molecules that have a central role in fundamental and applied research. Over the course of almost two centuries, the area of azobenzenes has witnessed great achievements; azobenzenes have evolved from simple dyes to 'little engines' and have become ubiquitous in many aspects of our lives, ranging from textiles, cosmetics, food and medicine to energy and photonics. Despite their long history, azobenzenes continue to arouse academic interest, while being intensively produced for industrial purposes, owing to their rich chemistry, versatile and straightforward design, robust photoswitching process and biodegradability. The development of azobenzenes has stimulated the production of new coloured and light-responsive materials with various applications, and their use continues to expand towards new high-tech applications. In this Review, we highlight the latest achievements in the synthesis of red-light-responsive azobenzenes and the emerging application areas of photopharmacology, photoswitchable adhesives and biodegradable materials for drug delivery. We show how the synthetic versatility and adaptive properties of azobenzenes continue to inspire new research directions, with limits imposed only by one's imagination.
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18
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Silanteva IA, Komolkin AV, Mamontova VV, Gabrusenok PV, Vorontsov-Velyaminov PN, Santer S, Kasyanenko NA. Cis-Isomers of Photosensitive Cationic Azobenzene Surfactants in DNA Solutions at Different NaCl Concentrations: Experiment and Modeling. J Phys Chem B 2021; 125:11197-11207. [PMID: 34586822 DOI: 10.1021/acs.jpcb.1c07864] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The DNA interaction with cis-isomers of photosensitive azobenzene-containing surfactants was studied by both experimental methods and computer simulation. It was shown that before the organization of micelles, such surfactants in the cis-conformation form associates of only a single type with a disordered orientation of molecules. In contrast, for trans-isomers, there exist two types of associates with head-to-head or head-to-tail orientations of molecules in dependence on salt concentration in a solution. The comparison of cis- and trans-isomer binding to DNA and the influence of salt concentration on the formation of their complexes with DNA were studied. It was shown that cis-isomers interact with phosphate groups of DNA and that their molecules were also located along the minor groove of DNA.
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Affiliation(s)
- Irina A Silanteva
- Faculty of Physics, Saint Petersburg University, 7-9 Universitetskaya Embankment, Saint Petersburg 199034, Russia
| | - Andrei V Komolkin
- Faculty of Physics, Saint Petersburg University, 7-9 Universitetskaya Embankment, Saint Petersburg 199034, Russia
| | - Veronika V Mamontova
- Faculty of Physics, Saint Petersburg University, 7-9 Universitetskaya Embankment, Saint Petersburg 199034, Russia
| | - Pavel V Gabrusenok
- Faculty of Physics, Saint Petersburg University, 7-9 Universitetskaya Embankment, Saint Petersburg 199034, Russia
| | - Pavel N Vorontsov-Velyaminov
- Faculty of Physics, Saint Petersburg University, 7-9 Universitetskaya Embankment, Saint Petersburg 199034, Russia
| | - Svetlana Santer
- Experimental Physics, Institute of Physics and Astronomy, University of Potsdam, 14476 Potsdam-Golm, Germany
| | - Nina A Kasyanenko
- Faculty of Physics, Saint Petersburg University, 7-9 Universitetskaya Embankment, Saint Petersburg 199034, Russia
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19
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Ahmad AA, Al-Bataineh QM, Al-Nawafleh DM, Telfah AD. Photoisomerization Kinetics of Photoswitchable Thin Films Based on Nanostructure/Molecular Layers of AlN-AO7. Photochem Photobiol 2021; 98:831-842. [PMID: 34614230 DOI: 10.1111/php.13535] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Revised: 09/03/2021] [Accepted: 09/29/2021] [Indexed: 01/12/2023]
Abstract
The photoisomerization kinetics of photoswitchable thin films based on nanostructure/molecular layers of AlN-AO7 have been studied, investigated and reported. The trans → cis isomerization process occurs by UV-light irradiation. The cis-isomer could be turned back to the trans-isomer by either thermal or optical relaxation. The kinetics and time-evolution of the photoisomerization and reverse isomerization mechanism of AlN-AO7 thin films are investigated by UV-Vis absorbance spectra using relevant models. All phases of AlN-AO7 thin film, initial trans-, cis-, optical trans-, thermal trans-phases, were investigated using UV-Vis absorbance spectra, FTIR spectra, XRD and SEM. Transforming AlN-AO7 thin film from the initial trans-phase into cis-phase leads to curvature in the AO7 leaves and increases in the strain inside the structure. Going back to the trans-phase by either optical or thermal relaxation leads to vanishing the curvature and decreasing the structure's strain. Finally, the energy storage capacity was calculated using DSC and was found to be 36.38 J g-1 , simultaneously realizing the multisource solar energy storage and environmental heat.
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Affiliation(s)
- Ahmad A Ahmad
- Department of Physics, Jordan University of Science & Technology, Irbid, Jordan
| | - Qais M Al-Bataineh
- Department of Physics, Jordan University of Science & Technology, Irbid, Jordan.,Leibniz Institut für Analytische Wissenschaften-ISAS-e.V., Dortmund, Germany
| | - Dima M Al-Nawafleh
- Department of Physics, Jordan University of Science & Technology, Irbid, Jordan
| | - Ahmad D Telfah
- Leibniz Institut für Analytische Wissenschaften-ISAS-e.V., Dortmund, Germany.,Hamdi Mango Center for Scientific Research (HMCSR), the Jordan University, Amman, Jordan
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20
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Merritt ICD, Jacquemin D, Vacher M. cis → trans photoisomerisation of azobenzene: a fresh theoretical look. Phys Chem Chem Phys 2021; 23:19155-19165. [PMID: 34195720 DOI: 10.1039/d1cp01873f] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The cis → trans photo-isomerisation mechanism of azobenzene, after excitation to the nπ* and ππ* states, is revisited using high-level ab initio surface hopping mixed quantum-classical dynamics in combination with multi-reference CASSCF electronic structure calculations. A reduction of photoisomerisation quantum yield of 0.10 on exciting to the higher energy ππ* state compared to the lower energy nπ* state is obtained, in close agreement with the most recent experimental values [Ladányi et al., Photochem. Photobiol. Sci., 2017, 16, 1757-1761] which re-examined previous literature values which showed larger changes in quantum yield. By direct comparison of both excitations, we have found that the explanation for the decrease in quantum yield is not the same as for the reduction observed in the trans → cis photoisomerisation. In contrast to the trans → cis scenario, S1 → S0 decay does not occur at 'earlier' C-NN-C angles along the central torsional coordinate after ππ* excitation, as in the cis → trans case the rotation about this coordinate occurs too rapidly. The wavelength dependency of the quantum yield is instead found to be due to a potential well on the S2 surface, from which either cis or trans-azobenzene can be formed. While this well is accessible after both excitations, it is more easily accessed after ππ* excitation - an additional 15-17% of photochromes, which under nπ* excitation would have exclusively formed the trans isomer, are trapped in this well after ππ* excitation. The probability of forming the cis isomer when leaving this well is also higher after ππ* excitation, increasing from 9% to 35%. The combination of these two factors results in the reduction of 0.10 of the quantum yield of photoisomerisation on ππ* excitation of cis-azobenzene, compared to nπ* excitation.
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Affiliation(s)
| | - Denis Jacquemin
- Laboratoire CEISAM - UMR 6230 - CNRS - Université de Nantes, Nantes, France.
| | - Morgane Vacher
- Laboratoire CEISAM - UMR 6230 - CNRS - Université de Nantes, Nantes, France.
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21
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Titov E, Hummert J, Ikonnikov E, Mitrić R, Kornilov O. Electronic relaxation of aqueous aminoazobenzenes studied by time-resolved photoelectron spectroscopy and surface hopping TDDFT dynamics calculations. Faraday Discuss 2021; 228:226-241. [PMID: 33586720 DOI: 10.1039/d0fd00111b] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Studies of ultrafast relaxation of molecular chromophores are complicated by the fact that most chromophores of biological and technological importance are rather large molecules and are strongly affected by their environment, either solvent or a protein cage. Here we present an approach which allows us to follow transient electronic structure of complex photoexcited molecules. We use the method of time-resolved photoelectron spectroscopy in solution to follow relaxation of two prototypical aqueous chromophores, Methyl Orange and Metanil Yellow, both of which are aminoazobenzene derivatives. Using excitation by 400 nm laser pulses and ionization by wavelength-selected 46.7 nm XUV pulses from high-order harmonic generation we follow relaxation of both molecules via the dark S1 state. The photoelectron spectra yield binding energies of both ground and excited states. We combine the experimental results with surface hopping time-dependent density functional theory (TDDFT) calculations employing B3LYP+D3 and ωB97X-D functionals. The results demonstrate that the method is generally suitable for description of ultrafast dynamics in these molecules and can recover absolute binding energies observed in the experiment. The B3LYP+D3 functional appears to be better suited for these systems, especially in the case of Metanil Yellow, where it indicates the importance of an intramolecular charge transfer state. Our results pave the way towards quantitative understanding of evolving electronic structure in photo-induced relaxation processes.
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Affiliation(s)
- Evgenii Titov
- Institut für Physikalische und Theoretische Chemie, Julius-Maximilians-Universität Würzburg, Emil-Fischer-Straße 42, 97074 Würzburg, Germany.
| | - Johan Hummert
- Max Born Institute, Max-Born-Straße 2A, 12489 Berlin, Germany.
| | | | - Roland Mitrić
- Institut für Physikalische und Theoretische Chemie, Julius-Maximilians-Universität Würzburg, Emil-Fischer-Straße 42, 97074 Würzburg, Germany.
| | - Oleg Kornilov
- Max Born Institute, Max-Born-Straße 2A, 12489 Berlin, Germany.
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22
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Titov E. On the Low-Lying Electronically Excited States of Azobenzene Dimers: Transition Density Matrix Analysis. MOLECULES (BASEL, SWITZERLAND) 2021; 26:molecules26144245. [PMID: 34299521 PMCID: PMC8303869 DOI: 10.3390/molecules26144245] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Revised: 07/08/2021] [Accepted: 07/09/2021] [Indexed: 11/16/2022]
Abstract
Azobenzene-containing molecules may associate with each other in systems such as self-assembled monolayers or micelles. The interaction between azobenzene units leads to a formation of exciton states in these molecular assemblies. Apart from local excitations of monomers, the electronic transitions to the exciton states may involve charge transfer excitations. Here, we perform quantum chemical calculations and apply transition density matrix analysis to quantify local and charge transfer contributions to the lowest electronic transitions in azobenzene dimers of various arrangements. We find that the transitions to the lowest exciton states of the considered dimers are dominated by local excitations, but charge transfer contributions become sizable for some of the lowest ππ* electronic transitions in stacked and slip-stacked dimers at short intermolecular distances. In addition, we assess different ways to partition the transition density matrix between fragments. In particular, we find that the inclusion of the atomic orbital overlap has a pronounced effect on quantifying charge transfer contributions if a large basis set is used.
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Affiliation(s)
- Evgenii Titov
- Theoretical Chemistry, Institute of Chemistry, University of Potsdam, Karl-Liebknecht-Straße 24-25, 14476 Potsdam, Germany
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23
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Park JE, Won S, Cho W, Kim JG, Jhang S, Lee JG, Wie JJ. Fabrication and applications of stimuli‐responsive micro/nanopillar arrays. JOURNAL OF POLYMER SCIENCE 2021. [DOI: 10.1002/pol.20210311] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Jeong Eun Park
- Department of Polymer Science and Engineering Inha University Incheon 22212 Republic of Korea
- Program in Environmental and Polymer Engineering Inha University Incheon 22212 Republic of Korea
| | - Sukyoung Won
- Department of Polymer Science and Engineering Inha University Incheon 22212 Republic of Korea
- Program in Environmental and Polymer Engineering Inha University Incheon 22212 Republic of Korea
| | - Woongbi Cho
- Department of Polymer Science and Engineering Inha University Incheon 22212 Republic of Korea
- Program in Environmental and Polymer Engineering Inha University Incheon 22212 Republic of Korea
| | - Jae Gwang Kim
- Department of Polymer Science and Engineering Inha University Incheon 22212 Republic of Korea
- Program in Environmental and Polymer Engineering Inha University Incheon 22212 Republic of Korea
| | - Saebohm Jhang
- Department of Polymer Science and Engineering Inha University Incheon 22212 Republic of Korea
- Program in Environmental and Polymer Engineering Inha University Incheon 22212 Republic of Korea
| | - Jae Gyeong Lee
- Department of Polymer Science and Engineering Inha University Incheon 22212 Republic of Korea
- Program in Environmental and Polymer Engineering Inha University Incheon 22212 Republic of Korea
| | - Jeong Jae Wie
- Department of Polymer Science and Engineering Inha University Incheon 22212 Republic of Korea
- Program in Environmental and Polymer Engineering Inha University Incheon 22212 Republic of Korea
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24
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Liang R. First-Principles Nonadiabatic Dynamics Simulation of Azobenzene Photodynamics in Solutions. J Chem Theory Comput 2021; 17:3019-3030. [PMID: 33882676 DOI: 10.1021/acs.jctc.1c00105] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The photoisomerization of azobenzene is a prototypical reaction of various light-activated processes in material and biomedical sciences. However, its reaction mechanism has been under debate for decades, partly due to the challenges in computational simulations to accurately describe the molecule's photodynamics. A recent study (J. Am. Chem. Soc. 2020, 142 (49), 20,680-20,690) addressed the challenges by combining the hole-hole Tamm-Dancoff Approximated (hh-TDA) density functional theory (DFT) method with the ab initio multiple spawning (AIMS) algorithm. The hh-TDA-DFT/AIMS method was applied to first-principles nonadiabatic dynamics simulation of azobenzene's photodynamics in the vacuum. However, it remains necessary to benchmark this new method in realistic molecular environments against experimental data. In the current work, the hh-TDA-DFT/AIMS method was employed in a quantum mechanics/molecular mechanics setting to characterize the trans azobenzene's photodynamics in explicit methanol and n-hexane solvents, following both the S1 (nπ*) and S2 (ππ*) excitations. The simulated absorption and fluorescence spectra following the S2 excitation quantitatively agree with the experiments. However, the hh-TDA-DFT method overestimates the torsional barrier on the S1 state, leading to an overestimation of the S1 state lifetime. The excited-state population decays to the ground state through two competing channels. The reactive channel partially yields the cis azobenzene photoproduct, and the unreactive channel exclusively leads to the reactant. The S2 excitation increases the decay through the unreactive channel and thus decreases the isomerization quantum yield compared to the S1 excitation. The solvent slows down the azobenzene's torsional dynamics on the S1 state, but its polarity minimally affects the reaction kinetics and quantum yields. Interestingly, the dynamics of the central torsion and angles of azobenzene play a critical role in determining the final isomer of the azobenzene. This benchmark study validates the hh-TDA-DFT/AIMS method's accuracy for simulating the azobenzene's photodynamics in realistic molecular environments.
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Affiliation(s)
- Ruibin Liang
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
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25
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Hutcheson A, Paul AC, Myhre RH, Koch H, Høyvik IM. Describing ground and excited state potential energy surfaces for molecular photoswitches using coupled cluster models. J Comput Chem 2021; 42:1419-1429. [PMID: 33973669 DOI: 10.1002/jcc.26553] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Revised: 03/19/2021] [Accepted: 04/20/2021] [Indexed: 11/08/2022]
Abstract
In this article, we use two extensively studied systems, a retinal model system and azobenzene, to explore the use of coupled cluster models for describing ground and singlet excited state potential energy surfaces of photoswitchable systems. While not being suitable for describing nuclear dynamics of photoisomerization, coupled cluster models have useful attributes, such as the inclusion of dynamical correlation, their black box nature, and the systematic improvement offered by truncation level. Results for the studied systems show that when triple excitations (here through the CC3 model) are included, ground and excited state potential energy surfaces for isomerization paths may reliably be generated, also for states of doubly excited character. For ground state equilibrium cis- and trans-azobenzene, the molecular geometry and basis set is seen to significantly impact the vertical excitation energies for the two lowest excited states. Efficient implementations of coupled cluster models can therefore constitute valuable tools for investigating photoswitchable systems and can be used for preliminary black box studies to gather information before more complicated excited state dynamics approaches are pursued.
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Affiliation(s)
- Anders Hutcheson
- Department of Chemistry, The Norwegian University of Science and Technology, Trondheim, Norway
| | | | - Rolf H Myhre
- Department of Chemistry, The Norwegian University of Science and Technology, Trondheim, Norway
| | | | - Ida-Marie Høyvik
- Department of Chemistry, The Norwegian University of Science and Technology, Trondheim, Norway
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26
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Gholamjani Moghaddam K, Giudetti G, Sipma W, Faraji S. Theoretical insights into the effect of size and substitution patterns of azobenzene derivatives on the DNA G-quadruplex. Phys Chem Chem Phys 2020; 22:26944-26954. [PMID: 33206064 DOI: 10.1039/d0cp04392c] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Introducing photoswitches into the DNA G-quadruplex provides excellent opportunities to control folding and unfolding of these assemblies, demonstrating their potential in the development of novel nanodevices with medical and nanotechnology applications. Using a quantum mechanics/molecular mechanics (QM/MM) scheme, we carried out a series of simulations to identify the effect of the size and substitution patterns of three azobenzene derivatives (AZ1, AZ2 and AZ3) on the excitation energies of the two lowest excited states of the smallest photoswitchable G-quadruplex reported to date. We demonstrated that the size and the substitution pattern do not affect the ultrafast cis-trans photoiomerization mechanism of the azobenzene derivatives significantly, in agreement with the experiment. However, molecular dynamics simulations revealed that while AZ2 and AZ3 G-quadruplexes are structurally stable during the simulations, the AZ1 G-quadruplex undergoes larger structural changes and shows two ground state populations that differ in the azobenzene backbone adopting two different conformations. AZ1, with para-para substitution pattern, provides more flexibility to the whole G-quadruplex structure compared to AZ2 and AZ3, and can thus facilitate the photoisomerization reaction between a nonpolymorphic, stacked, tetramolecular G-quadruplex and an unstructured state after trans-cis isomerization occurring in a longer time dynamics, in agreement with the experimental findings. The QM/MM simulations of the absorption spectra indicated that the thermal fluctuation plays a more crucial role in the main absorption band of the azobenzene derivatives than the inclusion of the G-quadruplex, implying that the influence of the G-quadruplex environment is minimal. We propose that the latter is attributed to the position of the azobenzene linkers in the G-quadruplexes, i.e. the edgewise loops containing the azobenzene moieties that are located above the G-quartets, not being fully embedded inside or involved in the stacked structure. Our theoretical findings provide support to a recent study of the photoresponsive formation of photoswitchable G-quadruplex motifs.
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27
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Yu JK, Bannwarth C, Liang R, Hohenstein EG, Martínez TJ. Nonadiabatic Dynamics Simulation of the Wavelength-Dependent Photochemistry of Azobenzene Excited to the nπ* and ππ* Excited States. J Am Chem Soc 2020; 142:20680-20690. [DOI: 10.1021/jacs.0c09056] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Jimmy K. Yu
- Biophysics Program, Stanford University, Stanford, California 94305, United States
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Christoph Bannwarth
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Ruibin Liang
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Edward G. Hohenstein
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Todd J. Martínez
- Biophysics Program, Stanford University, Stanford, California 94305, United States
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
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28
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Aleotti F, Nenov A, Salvigni L, Bonfanti M, El-Tahawy MM, Giunchi A, Gentile M, Spallacci C, Ventimiglia A, Cirillo G, Montali L, Scurti S, Garavelli M, Conti I. Spectral Tuning and Photoisomerization Efficiency in Push-Pull Azobenzenes: Designing Principles. J Phys Chem A 2020; 124:9513-9523. [PMID: 33170012 PMCID: PMC8015210 DOI: 10.1021/acs.jpca.0c08672] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
![]()
This
work demonstrates how push–pull substitution can induce spectral tuning toward the
visible range and improve the photoisomerization efficiency of azobenzene-based
photoswitches, making them good candidates for technological and biological
applications. The red-shifted bright ππ* state (S2) behaves like the lower and more productive dark nπ*
(S1) state because less potential energy along the planar
bending mode is available to reach higher energy unproductive nπ*/S0 crossing regions, which are responsible for the lower quantum
yield of the parent compound. The stabilization of the bright ππ*
state and the consequent increase in isomerization efficiency may
be regulated via the strength of push–pull substituents. Finally, the torsional
mechanism is recognized here as the unique productive route because
structures with bending values attributable to the inversion mechanism
were never detected, out of the 280 ππ* time-dependent
density functional theory (RASPT2-validated) dynamics simulations.
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Affiliation(s)
- Flavia Aleotti
- Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Artur Nenov
- Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Luca Salvigni
- Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Matteo Bonfanti
- Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Mohsen M El-Tahawy
- Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy.,Chemistry Department, Faculty of Science, Damanhour University, 22511 Damanhour, Egypt
| | - Andrea Giunchi
- Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Marziogiuseppe Gentile
- Dipartimento di Chimica "Giacomo Ciamician", Università di Bologna, Via Selmi 2, 40126 Bologna, Italy
| | - Claudia Spallacci
- Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Alessia Ventimiglia
- Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Giuseppe Cirillo
- Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Lorenzo Montali
- Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Stefano Scurti
- Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Marco Garavelli
- Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Irene Conti
- Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
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29
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Cheng SC, Wang CH, Lin YC, Tsuchido Y, Suzaki Y, Sei Y, Kuo TS, Horie M. Photoinduced Mechanical Motions of Pseudorotaxane Crystals Composed of Azobenzene and Ferrocenyl Groups on an Axle and a Crown Ether Ring. ACS APPLIED MATERIALS & INTERFACES 2020; 12:50002-50010. [PMID: 33089689 DOI: 10.1021/acsami.0c15171] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
This work describes the design and characterization of photoresponsive dynamic pseudorotaxane crystals composed of azobenzene and ferrocenyl groups in an ammonium cation axle component threaded through dibenzo[24]crown-8 ether rings. Pseudorotaxanes provide flexibility for cis and trans isomerization of azobenzene groups in a crystal state, enabling reversible bending motions under alternating 360 and 445 nm laser irradiation. For such bending motions, strained azobenzene structures were essential; these motifs were obtained by increasing the bulkiness of the substituents on the axle and ring molecules. In addition, the crystals showed photosalient effects, such as jumping motions, under 445 nm laser irradiation. These motions were assisted by the photoabsorption of the ferrocenyl group, which converted 445 nm laser light into heat. The maximum lifting weight accompanied by the photoinduced mechanical motion of a particular crystal was estimated to be 9600 times the crystal weight. These pseudorotaxane crystals exhibit promising features for applications in micro-nanometer-sized miniature mechanical devices.
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Affiliation(s)
- Shao-Chi Cheng
- Department of Chemical Engineering, National Tsing Hua University, 101, Section 2, Kuang-Fu Road, Hsinchu 30013, Taiwan
| | - Chi-Hsien Wang
- Department of Chemical Engineering, National Tsing Hua University, 101, Section 2, Kuang-Fu Road, Hsinchu 30013, Taiwan
| | - Yi-Chia Lin
- Department of Chemical Engineering, National Tsing Hua University, 101, Section 2, Kuang-Fu Road, Hsinchu 30013, Taiwan
| | - Yoshitaka Tsuchido
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
- Department of Chemistry, Faculty of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku-ku, Tokyo 162-8601, Japan
| | - Yuji Suzaki
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
| | - Yoshihisa Sei
- Open Facility Center, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
| | - Ting-Shen Kuo
- Department of Chemistry, National Normal University, No. 88, Section 4, Tingzhou Road, Taipei 11677, Taiwan
| | - Masaki Horie
- Department of Chemical Engineering, National Tsing Hua University, 101, Section 2, Kuang-Fu Road, Hsinchu 30013, Taiwan
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30
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Farfan CA, Turner DB. A systematic model study quantifying how conical intersection topography modulates photochemical reactions. Phys Chem Chem Phys 2020; 22:20265-20283. [PMID: 32966428 DOI: 10.1039/d0cp03464a] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Despite their important role in photochemistry and expected presence in most polyatomic molecules, conical intersections have been thoroughly characterized in a comparatively small number of systems. Conical intersections can confer molecular photoreactivity or photostability, often with remarkable efficacy, due to their unique structure: at a conical intersection, the adiabatic potential energy surfaces of two or more electronic states are degenerate, enabling ultrafast decay from an excited state without radiative emission, known as nonadiabatic transfer. Furthermore, the precise conical intersection topography determines fundamental properties of photochemical processes, including excited-state decay rate, efficacy, and molecular products that are formed. However, these relationships have yet to be defined comprehensively. In this article, we use an adaptable computational model to investigate a variety of conical intersection topographies, simulate resulting nonadiabatic dynamics, and calculate key photochemical observables. We varied the vibrational mode frequencies to modify conical intersection topography systematically in four primary classes of conical intersections and quantified the resulting rate, total yield, and product yield of nonadiabatic decay. The results reveal that higher vibrational mode frequencies reduce nonadiabatic transfer, but increase the transfer rate and resulting photoproduct formation. These trends can inform progress toward experimental control of photochemical reactions or tuning of molecules' photochemical properties based on conical intersections and their topography.
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Affiliation(s)
- Camille A Farfan
- Department of Chemistry, New York University, New York, NY 10003, USA
| | - Daniel B Turner
- Department of Chemistry, New York University, New York, NY 10003, USA
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31
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Yu JK, Bannwarth C, Hohenstein EG, Martínez TJ. Ab Initio Nonadiabatic Molecular Dynamics with Hole–Hole Tamm–Dancoff Approximated Density Functional Theory. J Chem Theory Comput 2020; 16:5499-5511. [DOI: 10.1021/acs.jctc.0c00644] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- Jimmy K. Yu
- Biophysics Program, Stanford University, Stanford, California 94305, United States
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Christoph Bannwarth
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Edward G. Hohenstein
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Todd J. Martínez
- Biophysics Program, Stanford University, Stanford, California 94305, United States
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
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32
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Kempfer-Robertson EM, Thompson LM. Effect of Oriented External Electric Fields on the Photo and Thermal Isomerization of Azobenzene. J Phys Chem A 2020; 124:3520-3529. [PMID: 32286821 DOI: 10.1021/acs.jpca.0c00492] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Azobenzene is a prototype molecule with potential applications in molecular switches, solar thermal batteries, sensors, photoresponsive membranes, molecular electronics, data storage, and nonlinear optics. Photo and thermal isomerization pathways exhibit different charge-transfer character and dipole moments, implying that the use of electric fields can be used to modulate the reactivity of azobenzene. This article examines the differential effect of orientated electric fields on the rotation and inversion thermal and photoisomerization pathways of azobenzene to explore the feasibility of using electric fields in the design of azobenzene-based molecular devices. Our findings demonstrate that the application of orientated electric fields modifies the accessibility of the S0/S1 seam of electronic degeneracy, as well as changes the energetically favored relaxation pathway in the branching space to yield different photoproducts. In addition, we observed strong-field dipole-inversion effects that cause a topographical change in the response of the potential energy surface to the applied field and can result in geometric minima that do not exist under field-free conditions. On the S0 surface, transition barriers can be modified on the order of ±10 kcal mol-1, enabling control of thermal isomerization rates.
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Affiliation(s)
| | - Lee M Thompson
- Department of Chemistry, University of Louisville, Louisville, Kentucky 40205, United States
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33
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Pirone D, Bandeira NAG, Tylkowski B, Boswell E, Labeque R, Garcia Valls R, Giamberini M. Contrasting Photo-Switching Rates in Azobenzene Derivatives: How the Nature of the Substituent Plays a Role. Polymers (Basel) 2020; 12:E1019. [PMID: 32365778 PMCID: PMC7284787 DOI: 10.3390/polym12051019] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Revised: 04/20/2020] [Accepted: 04/26/2020] [Indexed: 11/20/2022] Open
Abstract
A molecular design approach was used to create asymmetrical visible light-triggered azo-derivatives that can be good candidates for polymer functionalization. The specific electron-donor substituted molecules were characterized and studied by means of NMR analyses and UV-visible spectroscopy, comparing the results with Time Dependent Density Functional (TD-DFT) calculations. A slow rate of isomerization (ki = 1.5 × 10-4 s-1) was discovered for 4-((2-hydroxy-5methylphenyl) diazenyl)-3-methoxybenzoic acid (AZO1). By methylating this moiety, it was possible to unlock the isomerization mechanism for the second molecule, methyl 3-methoxy-4-((2-methoxy-5-methylphenyl) diazenyl)benzoate (AZO2), reaching promising isomerization rates with visible light irradiation in different solvents. It was discovered that this rate was heightened by one order of magnitude (ki = 3.1 × 10-3 s-1) for AZO2. A computational analysis using density functional (DFT/PBE0) and wavefunction (QD-NEVPT2) methodologies provided insight into the photodynamics of these systems. Both molecules require excitation to the second (S2) excited state situated in the visible region to initiate the isomerization. Two classic mechanisms were considered, namely rotation and inversion, with the former being energetically more favorable. These azo-derivatives show potential that paves the way for future applications as building blocks of functional polymers. Likewise, they could be really effective for the modification of existing commercial polymers, thus transferring their stimuli responsive properties to polymeric bulky structures, converting them into smart materials.
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Affiliation(s)
- Domenico Pirone
- Department of Chemical Engineering (DEQ), Rovira i Virgili University, Av. Països Catalans 26, 43007 Tarragona, Spain; (D.P.); (R.G.V.)
- Procter & Gamble Services Company n.v., Temselaan 100, 1853 Strombeek-Bever, Belgium;
| | - Nuno A. G. Bandeira
- BioISI—Biosystems & Integrative Sciences Institute; C8, Faculdade de Ciências, Universidade de Lisboa Campo Grande, 1749-016 Lisboa, Portugal;
| | - Bartosz Tylkowski
- Eurecat, Centre Tecnològic de Catalunya, C/Marcel-lí Domingo, 43007 Tarragona, Spain;
| | - Emily Boswell
- The Procter and Gamble Company, 8611 Beckett Rd, West Chester Township, Cincinnati, OH 45069, USA;
| | - Regine Labeque
- Procter & Gamble Services Company n.v., Temselaan 100, 1853 Strombeek-Bever, Belgium;
| | - Ricard Garcia Valls
- Department of Chemical Engineering (DEQ), Rovira i Virgili University, Av. Països Catalans 26, 43007 Tarragona, Spain; (D.P.); (R.G.V.)
- Eurecat, Centre Tecnològic de Catalunya, C/Marcel-lí Domingo, 43007 Tarragona, Spain;
| | - Marta Giamberini
- Department of Chemical Engineering (DEQ), Rovira i Virgili University, Av. Països Catalans 26, 43007 Tarragona, Spain; (D.P.); (R.G.V.)
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34
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Inamori M, Ikabata Y, Yoshikawa T, Nakai H. Unveiling controlling factors of the S0/S1 minimum energy conical intersection (2): Application to penalty function method. J Chem Phys 2020; 152:144108. [DOI: 10.1063/1.5142592] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Affiliation(s)
- Mayu Inamori
- Department of Chemistry and Biochemistry, School of Advanced Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
| | - Yasuhiro Ikabata
- Waseda Research Institute for Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
| | - Takeshi Yoshikawa
- Waseda Research Institute for Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
| | - Hiromi Nakai
- Department of Chemistry and Biochemistry, School of Advanced Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
- Waseda Research Institute for Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
- Elements Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University, Katsura, Kyoto 615-8520, Japan
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35
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Isac DL, Airinei A, Homocianu M, Fifere N, Cojocaru C, Hulubei C. Photochromic properties of some azomaleimide derivatives and DFT quantum chemical study of thermal cis-trans isomerization pathways. J Photochem Photobiol A Chem 2020. [DOI: 10.1016/j.jphotochem.2019.112300] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Slavov C, Yang C, Heindl AH, Wegner HA, Dreuw A, Wachtveitl J. Thiophenylazobenzene: An Alternative Photoisomerization Controlled by Lone-Pair⋅⋅⋅π Interaction. Angew Chem Int Ed Engl 2020; 59:380-387. [PMID: 31595575 PMCID: PMC6973119 DOI: 10.1002/anie.201909739] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2019] [Revised: 10/01/2019] [Indexed: 01/15/2023]
Abstract
Azoheteroarene photoswitches have attracted attention due to their unique properties. We present the stationary photochromism and ultrafast photoisomerization mechanism of thiophenylazobenzene (TphAB). It demonstrates impressive fatigue resistance and photoisomerization efficiency, and shows favorably separated (E)- and (Z)-isomer absorption bands, allowing for highly selective photoconversion. The (Z)-isomer of TphAB adopts an unusual orthogonal geometry where the thiophenyl group is perfectly perpendicular to the phenyl group. This geometry is stabilized by a rare lone-pair⋅⋅⋅π interaction between the S atom and the phenyl group. The photoisomerization of TphAB occurs on the sub-ps to ps timescale and is governed by this interaction. Therefore, the adoption and disruption of the orthogonal geometry requires significant movement along the inversion reaction coordinates (CNN and NNC angles). Our results establish TphAB as an excellent photoswitch with versatile properties that expand the application possibilities of AB derivatives.
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Affiliation(s)
- Chavdar Slavov
- Institute of Physical and Theoretical ChemistryGoethe UniversityFrankfurt am MainGermany
| | - Chong Yang
- Interdisciplinary Center for Scientific Computing (IWR)University of HeidelbergHeidelbergGermany
| | - Andreas H. Heindl
- Institute of Organic ChemistryCenter for Materials Research (LaMa)Justus Liebig UniversityGiessenGermany
| | - Hermann A. Wegner
- Institute of Organic ChemistryCenter for Materials Research (LaMa)Justus Liebig UniversityGiessenGermany
| | - Andreas Dreuw
- Interdisciplinary Center for Scientific Computing (IWR)University of HeidelbergHeidelbergGermany
| | - Josef Wachtveitl
- Institute of Physical and Theoretical ChemistryGoethe UniversityFrankfurt am MainGermany
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38
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Segatta F, Nenov A, Orlandi S, Arcioni A, Mukamel S, Garavelli M. Exploring the capabilities of optical pump X-ray probe NEXAFS spectroscopy to track photo-induced dynamics mediated by conical intersections. Faraday Discuss 2020; 221:245-264. [DOI: 10.1039/c9fd00073a] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In the present contribution we introduce an accurate theoretical approach for the simulation of NEXAFS spectra of organic molecules, employing azobenzene as a test case.
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Affiliation(s)
- Francesco Segatta
- Dipartimento di Chimica Industriale “Toso Montanari”
- Università degli studi di Bologna
- 40136 Bologna
- Italy
| | - Artur Nenov
- Dipartimento di Chimica Industriale “Toso Montanari”
- Università degli studi di Bologna
- 40136 Bologna
- Italy
| | - Silvia Orlandi
- Dipartimento di Chimica Industriale “Toso Montanari”
- Università degli studi di Bologna
- 40136 Bologna
- Italy
| | - Alberto Arcioni
- Dipartimento di Chimica Industriale “Toso Montanari”
- Università degli studi di Bologna
- 40136 Bologna
- Italy
| | - Shaul Mukamel
- Department of Chemistry and Physics and Astronomy
- University of California
- Irvine
- USA
| | - Marco Garavelli
- Dipartimento di Chimica Industriale “Toso Montanari”
- Università degli studi di Bologna
- 40136 Bologna
- Italy
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39
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Slavov C, Yang C, Heindl AH, Wegner HA, Dreuw A, Wachtveitl J. Thiophenylazobenzene: An Alternative Photoisomerization Controlled by Lone‐Pair⋅⋅⋅π Interaction. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201909739] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Chavdar Slavov
- Institute of Physical and Theoretical Chemistry Goethe University Frankfurt am Main Germany
| | - Chong Yang
- Interdisciplinary Center for Scientific Computing (IWR) University of Heidelberg Heidelberg Germany
| | - Andreas H. Heindl
- Institute of Organic Chemistry Center for Materials Research (LaMa) Justus Liebig University Giessen Germany
| | - Hermann A. Wegner
- Institute of Organic Chemistry Center for Materials Research (LaMa) Justus Liebig University Giessen Germany
| | - Andreas Dreuw
- Interdisciplinary Center for Scientific Computing (IWR) University of Heidelberg Heidelberg Germany
| | - Josef Wachtveitl
- Institute of Physical and Theoretical Chemistry Goethe University Frankfurt am Main Germany
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40
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Aleotti F, Soprani L, Nenov A, Berardi R, Arcioni A, Zannoni C, Garavelli M. Multidimensional Potential Energy Surfaces Resolved at the RASPT2 Level for Accurate Photoinduced Isomerization Dynamics of Azobenzene. J Chem Theory Comput 2019; 15:6813-6823. [DOI: 10.1021/acs.jctc.9b00561] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Flavia Aleotti
- Dipartimento di Chimica Industriale “Toso Montanari”, Universitá di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Lorenzo Soprani
- Dipartimento di Chimica Industriale “Toso Montanari”, Universitá di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Artur Nenov
- Dipartimento di Chimica Industriale “Toso Montanari”, Universitá di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Roberto Berardi
- Dipartimento di Chimica Industriale “Toso Montanari”, Universitá di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Alberto Arcioni
- Dipartimento di Chimica Industriale “Toso Montanari”, Universitá di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Claudio Zannoni
- Dipartimento di Chimica Industriale “Toso Montanari”, Universitá di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
| | - Marco Garavelli
- Dipartimento di Chimica Industriale “Toso Montanari”, Universitá di Bologna, Viale del Risorgimento 4, 40136 Bologna, Italy
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41
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Garcia-Amorós J, Maerz B, Reig M, Cuadrado A, Blancafort L, Samoylova E, Velasco D. Picosecond Switchable Azo Dyes. Chemistry 2019; 25:7726-7732. [PMID: 30924974 DOI: 10.1002/chem.201900796] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Indexed: 12/27/2022]
Abstract
Azo dyes that combine electron-withdrawing thiazole/benzothiazole heterocycles and electron-donating amino groups within the very same covalent skeleton exhibit relaxation times for their thermal isomerization kinetics within milli- and microsecond timescales at room temperature. Notably, the thermal back reaction of the corresponding benzothiazolium and thiazolium salts occurred much faster, within the picosecond temporal domain. In fact, these new light-sensitive platforms are the first molecular azo derivatives capable of reversible switching between their trans and cis isomers in a subnanosecond timescale under ambient conditions. In addition, theoretical calculations revealed very low activation energies for the isomerization process, in accordance with the fast subnanosecond kinetics that were observed experimentally.
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Affiliation(s)
- Jaume Garcia-Amorós
- Grup de Materials Orgànics, Institut de Nanociència i Nanotecnologia (IN2UB), Departament de Química Inorgànica i Orgànica, (Secció de Química Orgànica), Universitat de Barcelona, Martí i Franquès 1, 08028, Barcelona, Spain
| | - Benjamin Maerz
- Chair for BioMolecular Optics, Department of Physics, Ludwigs-Maximilians-University, Oettingenstrasse 67, 80538, Munich, Germany
| | - Marta Reig
- Grup de Materials Orgànics, Institut de Nanociència i Nanotecnologia (IN2UB), Departament de Química Inorgànica i Orgànica, (Secció de Química Orgànica), Universitat de Barcelona, Martí i Franquès 1, 08028, Barcelona, Spain
| | - Alba Cuadrado
- Grup de Materials Orgànics, Institut de Nanociència i Nanotecnologia (IN2UB), Departament de Química Inorgànica i Orgànica, (Secció de Química Orgànica), Universitat de Barcelona, Martí i Franquès 1, 08028, Barcelona, Spain
| | - Lluís Blancafort
- Institut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, Campus de Montilivi, 17003, Girona, Spain
| | - Elena Samoylova
- Chair for BioMolecular Optics, Department of Physics, Ludwigs-Maximilians-University, Oettingenstrasse 67, 80538, Munich, Germany
| | - Dolores Velasco
- Grup de Materials Orgànics, Institut de Nanociència i Nanotecnologia (IN2UB), Departament de Química Inorgànica i Orgànica, (Secció de Química Orgànica), Universitat de Barcelona, Martí i Franquès 1, 08028, Barcelona, Spain
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42
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Gruber E, Strauss MA, Wegner HA, Andersen LH. Action-spectroscopy studies of positively charge-tagged azobenzene in solution and in the gas-phase. J Chem Phys 2019; 150:084303. [PMID: 30823747 DOI: 10.1063/1.5085743] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The absorption of a positively charge-tagged azobenzene molecule is studied in the gas-phase by measuring photoinduced fragmentation of ions as a function of time. This technique provides information on prompt as well as delayed fragmentation, and a single dissociation channel after one-photon absorption is identified. The spectra in solution, as well as in the gas-phase, show a weak S0 → S1, a strong S0 → S2, and a broad absorption band in the UV regime. The bands are assigned through time dependent density functional theory calculations. The ratio of the various absorption bands depends on the trans to cis isomerization fraction and may be tuned by light irradiation. Gas-phase absorption spectra are presented and discussed in terms of trans and cis isomers.
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Affiliation(s)
- Elisabeth Gruber
- Department of Physics and Astronomy, Aarhus University, 8000 Aarhus, Denmark
| | - Marcel A Strauss
- Institute of Organic Chemistry, Justus-Liebig University Giessen, 35392 Giessen, Germany
| | - Hermann A Wegner
- Institute of Organic Chemistry, Justus-Liebig University Giessen, 35392 Giessen, Germany
| | - Lars H Andersen
- Department of Physics and Astronomy, Aarhus University, 8000 Aarhus, Denmark
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43
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Del Pezzo R, Bandeira NA, Trojanowska A, Fernandez Prieto S, Underiner T, Giamberini M, Tylkowski B. Ortho-substituted azobenzene: shedding light on new benefits. PURE APPL CHEM 2018. [DOI: 10.1515/pac-2018-0719] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Novel functional polymeric microcapsules, based on modified azobenzene moieties, are exhaustively investigated, both from a theoretical and experimental points of view. Theoretical calculations and several measurements demonstrate that visible light can act as a trigger for release of encapsulated material, as a consequence of trans-cis isomerization which modifies microcapsule surface topography and can induce a “squeezing” release mechanism. Interfacial polymerization of an oil-in-water emulsion is performed and leads to core-shell microcapsules which are characterized by means of atomic force microscopy (AFM), optical microscopy (OM), scanning electron microscopy (SEM) and light scattering. These analyses put into evidence that microcapsules’ size and surface morphology are strongly affected by irradiation under visible light: moreover, these changes can be reverted by sample exposure to temperatures around 50°C. This last evidence is also confirmed by NMR kinetic analyses on modified azobenzene moiety. Finally, it is shown that these smart microcapsules can be successfully used to get a controlled release of actives such as fragrancies, as a consequence of visible light irradiation, as confirmed by an olfactive panel.
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Affiliation(s)
- Rita Del Pezzo
- Department of Chemical Engineering , Rovira i Virgili University , Av. Països Catalans 26 , Tarragona 43007 , Spain
- The Procter and Gamble Company , Temselaan 100 , Strombeek-Bever 1853 , Belgium
| | - Nuno A.G. Bandeira
- Biosystems and Integrative Sciences Institute, Faculty of Sciences , University of Lisbon , Campo Grande-C8 , Lisboa 1749-016 , Portugal
- Centro de Química Estrutural – Instituto Superior Técnico , Universidade de Lisboa , Av. Rovisco Pais , Lisboa 1049-001 , Portugal
- Institute of Chemical Research of Catalonia (ICIQ) – Avda. Països Catalans , Tarragona 16-43007 , Spain
| | - Anna Trojanowska
- Department of Chemical Engineering , Rovira i Virgili University , Av. Països Catalans 26 , Tarragona 43007 , Spain
- Centre Tecnològic de la Química de Catalunya , Carrer Marcelli Domingo s/n , Tarragona 43007 , Spain
| | | | - Todd Underiner
- The Procter and Gamble Company , 6210 Center Hill Avenue , Cincinnati, OH 45224 , USA
| | - Marta Giamberini
- Department of Chemical Engineering , Rovira i Virgili University , Av. Països Catalans 26 , Tarragona 43007 , Spain
- Centre Tecnològic de la Química de Catalunya , Carrer Marcelli Domingo s/n , Tarragona 43007 , Spain
| | - Bartosz Tylkowski
- Department of Chemical Engineering , Rovira i Virgili University , Av. Països Catalans 26 , Tarragona 43007 , Spain
- Centre Tecnològic de la Química de Catalunya , Carrer Marcelli Domingo s/n , Tarragona 43007 , Spain
- The Procter and Gamble Company , 6210 Center Hill Avenue , Cincinnati, OH 45224 , USA
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44
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Nakai H, Inamori M, Ikabata Y, Wang Q. Unveiling Controlling Factors of the S0/S1 Minimum Energy Conical Intersection: A Theoretical Study. J Phys Chem A 2018; 122:8905-8910. [DOI: 10.1021/acs.jpca.8b07864] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Hiromi Nakai
- Department of Chemistry and Biochemistry, School of Advanced Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
- Waseda Research Institute for Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
- Elements Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University, Katsura, Kyoto 615-8520, Japan
| | - Mayu Inamori
- Department of Chemistry and Biochemistry, School of Advanced Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
| | - Yasuhiro Ikabata
- Waseda Research Institute for Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
| | - Qi Wang
- Waseda Research Institute for Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku-ku, Tokyo 169-8555, Japan
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45
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Bull JN, Scholz MS, Carrascosa E, da Silva G, Bieske EJ. Double Molecular Photoswitch Driven by Light and Collisions. PHYSICAL REVIEW LETTERS 2018; 120:223002. [PMID: 29906145 DOI: 10.1103/physrevlett.120.223002] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2017] [Indexed: 06/08/2023]
Abstract
The shapes of many molecules can be transformed by light or heat. Here we investigate collision- and photon-induced interconversions of EE, EZ, and ZZ isomers of the isolated Congo red (CR) dianion, a double molecular switch containing two ─N═N─ azo groups, each of which can have the E or Z configuration. We find that collisional activation of CR dianions drives a one-way ZZ→EZ→EE cascade towards the lowest-energy isomer, whereas the absorption of a single photon over the 270-600 nm range can switch either azo group from E to Z or Z to E, driving the CR dianion to lower- or higher-energy forms. The experimental results, which are interpreted with the aid of calculated statistical isomerization rates, indicate that photoisomerization of CR in the gas phase involves a passage through conical intersection seams linking the excited and ground state potential energy surfaces rather than through isomerization on the ground state potential energy surface following internal conversion.
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Affiliation(s)
- James N Bull
- School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia
| | - Michael S Scholz
- School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia
| | - Eduardo Carrascosa
- School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia
| | - Gabriel da Silva
- Department of Chemical Engineering, University of Melbourne, Parkville, Victoria 3010, Australia
| | - Evan J Bieske
- School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia
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46
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Mondal P, Granucci G, Rastädter D, Persico M, Burghardt I. Azobenzene as a photoregulator covalently attached to RNA: a quantum mechanics/molecular mechanics-surface hopping dynamics study. Chem Sci 2018; 9:4671-4681. [PMID: 29899961 PMCID: PMC5969502 DOI: 10.1039/c8sc00072g] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2018] [Accepted: 04/25/2018] [Indexed: 12/21/2022] Open
Abstract
Azobenzene covalently attached to RNA undergoes trans-to-cis photo-switching on a time scale of ∼15 picoseconds – 30 times slower than in vacuo.
The photoregulation of nucleic acids by azobenzene photoswitches has recently attracted considerable interest in the context of emerging biotechnological applications. To understand the mechanism of photoinduced isomerisation and conformational control in these complex biological environments, we employ a Quantum Mechanics/Molecular Mechanics (QM/MM) approach in conjunction with nonadiabatic Surface Hopping (SH) dynamics. Two representative RNA–azobenzene complexes are investigated, both of which contain the azobenzene chromophore covalently attached to an RNA double strand via a β-deoxyribose linker. Due to the pronounced constraints of the local RNA environment, it is found that trans-to-cis isomerization is slowed down to a time scale of ∼10–15 picoseconds, in contrast to 500 femtoseconds in vacuo, with a quantum yield reduced by a factor of two. By contrast, cis-to-trans isomerization remains in a sub-picosecond regime. A volume-conserving isomerization mechanism is found, similarly to the pedal-like mechanism previously identified for azobenzene in solution phase. Strikingly, the chiral RNA environment induces opposite right-handed and left-handed helicities of the ground-state cis-azobenzene chromophore in the two RNA–azobenzene complexes, along with an almost completely chirality conserving photochemical pathway for these helical enantiomers.
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Affiliation(s)
- Padmabati Mondal
- Institute of Physical and Theoretical Chemistry , Goethe University Frankfurt , Max-von-Laue-Str. 7 , 60438 Frankfurt , Germany . ;
| | - Giovanni Granucci
- Dipartimento di Chimica e Chimica Industriale , Università di Pisa , v. Moruzzi 13 , I-56124 Pisa , Italy .
| | - Dominique Rastädter
- Institute of Physical and Theoretical Chemistry , Goethe University Frankfurt , Max-von-Laue-Str. 7 , 60438 Frankfurt , Germany . ;
| | - Maurizio Persico
- Dipartimento di Chimica e Chimica Industriale , Università di Pisa , v. Moruzzi 13 , I-56124 Pisa , Italy .
| | - Irene Burghardt
- Institute of Physical and Theoretical Chemistry , Goethe University Frankfurt , Max-von-Laue-Str. 7 , 60438 Frankfurt , Germany . ;
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Čechová L, Kind J, Dračínský M, Filo J, Janeba Z, Thiele CM, Cigáň M, Procházková E. Photoswitching Behavior of 5-Phenylazopyrimidines: In Situ Irradiation NMR and Optical Spectroscopy Combined with Theoretical Methods. J Org Chem 2018; 83:5986-5998. [DOI: 10.1021/acs.joc.8b00569] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Lucie Čechová
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nám. 2, Prague 16610, Czech Republic
| | - Jonas Kind
- Clemens-Schöpf-Institut für Organische Chemie und Biochemie, Technische Universität Darmstadt, Alarich-Weiss-Strasse 16, Darmstadt 64287, Germany
| | - Martin Dračínský
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nám. 2, Prague 16610, Czech Republic
| | - Juraj Filo
- Institute of Chemistry, Comenius University, Ilkovičova 6, Bratislava 84215, Slovakia
| | - Zlatko Janeba
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nám. 2, Prague 16610, Czech Republic
| | - Christina M. Thiele
- Clemens-Schöpf-Institut für Organische Chemie und Biochemie, Technische Universität Darmstadt, Alarich-Weiss-Strasse 16, Darmstadt 64287, Germany
| | - Marek Cigáň
- Institute of Chemistry, Comenius University, Ilkovičova 6, Bratislava 84215, Slovakia
| | - Eliška Procházková
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nám. 2, Prague 16610, Czech Republic
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48
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Nenov A, Borrego-Varillas R, Oriana A, Ganzer L, Segatta F, Conti I, Segarra-Marti J, Omachi J, Dapor M, Taioli S, Manzoni C, Mukamel S, Cerullo G, Garavelli M. UV-Light-Induced Vibrational Coherences: The Key to Understand Kasha Rule Violation in trans-Azobenzene. J Phys Chem Lett 2018; 9:1534-1541. [PMID: 29504764 DOI: 10.1021/acs.jpclett.8b00152] [Citation(s) in RCA: 79] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
We combine sub-20 fs transient absorption spectroscopy with state-of-the-art computations to study the ultrafast photoinduced dynamics of trans-azobenzene (AB). We are able to resolve the lifetime of the ππ* state, whose decay within ca. 50 fs is correlated to the buildup of the nπ* population and to the emergence of coherences in the dynamics, to date unobserved. Nonlinear spectroscopy simulations call for the CNN in-plane bendings as the active modes in the subps photoinduced coherent dynamics out of the ππ* state. Radiative to kinetic energy transfer into these modes drives the system to a high-energy planar nπ*/ground state conical intersection, inaccessible upon direct excitation of the nπ* state, that triggers an ultrafast (0.45 ps) nonproductive decay of the nπ* state and is thus responsible for the observed Kasha rule violation in UV excited trans-AB. On the other hand, cis-AB is built only after intramolecular vibrational energy redistribution and population of the NN torsional mode.
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Affiliation(s)
- Artur Nenov
- Dipartimento di Chimica Industriale , Università degli Studi di Bologna , Viale del Risorgimento 4 , I-40136 Bologna , Italy
| | - Rocio Borrego-Varillas
- IFN-CNR, Dipartimento di Fisica , Politecnico di Milano , Piazza Leonardo da Vinci 32 , I-20133 Milano , Italy
| | - Aurelio Oriana
- IFN-CNR, Dipartimento di Fisica , Politecnico di Milano , Piazza Leonardo da Vinci 32 , I-20133 Milano , Italy
| | - Lucia Ganzer
- IFN-CNR, Dipartimento di Fisica , Politecnico di Milano , Piazza Leonardo da Vinci 32 , I-20133 Milano , Italy
| | - Francesco Segatta
- Dipartimento di Chimica Industriale , Università degli Studi di Bologna , Viale del Risorgimento 4 , I-40136 Bologna , Italy
- European Center for Theoretical Studies in Nuclear Physics and Related Areas (ECT*-FBK) and Trento Institute for Fundamental Physics and Applications (TIFPA-INFN) , 38123 Trento , Italy
| | - Irene Conti
- Dipartimento di Chimica Industriale , Università degli Studi di Bologna , Viale del Risorgimento 4 , I-40136 Bologna , Italy
| | - Javier Segarra-Marti
- Laboratoire de Chimie UMR 5182 , Université Lyon, ENS de Lyon, CNRS, Université Lyon 1 , 46 Allée d'Italie , FR-69342 Lyon , France
| | - Junko Omachi
- Institute for Photon Science and Technology , University of Tokyo , 7-3-1 Hongo , Bunkyo-ku, Tokyo 113-0033 , Japan
| | - Maurizio Dapor
- European Center for Theoretical Studies in Nuclear Physics and Related Areas (ECT*-FBK) and Trento Institute for Fundamental Physics and Applications (TIFPA-INFN) , 38123 Trento , Italy
| | - Simone Taioli
- European Center for Theoretical Studies in Nuclear Physics and Related Areas (ECT*-FBK) and Trento Institute for Fundamental Physics and Applications (TIFPA-INFN) , 38123 Trento , Italy
- Faculty of Mathematics and Physics , Charles University , Praha 8 , 180 00 Prague , Czech Republic
| | - Cristian Manzoni
- IFN-CNR, Dipartimento di Fisica , Politecnico di Milano , Piazza Leonardo da Vinci 32 , I-20133 Milano , Italy
| | - Shaul Mukamel
- Department of Chemistry , University of California , Irvine , California 92697-2025 , United States
| | - Giulio Cerullo
- IFN-CNR, Dipartimento di Fisica , Politecnico di Milano , Piazza Leonardo da Vinci 32 , I-20133 Milano , Italy
| | - Marco Garavelli
- Dipartimento di Chimica Industriale , Università degli Studi di Bologna , Viale del Risorgimento 4 , I-40136 Bologna , Italy
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49
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Takeshita T, Hara M. Photoionization and trans-to-cis isomerization of β-cyclodextrin-encapsulated azobenzene induced by two-color two-laser-pulse excitation. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 193:475-479. [PMID: 29289746 DOI: 10.1016/j.saa.2017.12.061] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2017] [Revised: 12/19/2017] [Accepted: 12/20/2017] [Indexed: 06/07/2023]
Abstract
Azobenzene (1) and the complex resulting from the incorporation of 1 with cyclodextrin (1/CD) are attractive for light-driven applications such as micromachining and chemical biology tools. The highly sensitive photoresponse of 1 is crucial for light-driven applications containing both 1 and 1/CD to reach their full potential. In this study, we investigated the photoionization and trans-to-cis isomerization of 1/CD induced by one- and two-color two-laser pulse excitation. Photoionization of 1/CD, which was induced by stepwise two-photon absorption, was observed using laser pulse excitation at 266nm. Additionally, simultaneous irradiation with 266 and 532nm laser pulses increased the trans-to-cis isomerization yield (Υt→c) by 27%. It was concluded that the increase in Υt→c was caused by the occurrence of trans-to-cis isomerization in the higher-energy singlet state (Sn), which was reached by S1→Sn transition induced by laser pulse excitation at 532nm. The results of this study are potentially applicable in light-driven applications such as micromachining and chemical biology tools.
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Affiliation(s)
- Tatsuya Takeshita
- Department of Environmental and Food Sciences, Fukui University of Technology, Fukui, Japan
| | - Michihiro Hara
- Department of Environmental and Food Sciences, Fukui University of Technology, Fukui, Japan.
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Pang X, Jiang C, Qi Y, Yuan L, Hu D, Zhang X, Zhao D, Wang D, Lan Z, Li F. Ultrafast unidirectional chiral rotation in the Z–E photoisomerization of two azoheteroarene photoswitches. Phys Chem Chem Phys 2018; 20:25910-25917. [DOI: 10.1039/c8cp04762f] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Based on a large number of trajectories starting from the Z-isomer, for both azoheteroarenes, more than 99% of the trajectories decay through conical intersections with the same helicities as their initial geometries.
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Affiliation(s)
- Xiaojuan Pang
- Key Laboratory for Quantum Information and Quantum Optoelectronic Devices Shaanxi, and Department of Applied Physics
- Xi’an Jiaotong University
- Xi’an 710049
- China
| | - Chenwei Jiang
- Key Laboratory for Quantum Information and Quantum Optoelectronic Devices Shaanxi, and Department of Applied Physics
- Xi’an Jiaotong University
- Xi’an 710049
- China
| | - Yongnan Qi
- Key Laboratory for Quantum Information and Quantum Optoelectronic Devices Shaanxi, and Department of Applied Physics
- Xi’an Jiaotong University
- Xi’an 710049
- China
| | - Ling Yuan
- Key Laboratory for Quantum Information and Quantum Optoelectronic Devices Shaanxi, and Department of Applied Physics
- Xi’an Jiaotong University
- Xi’an 710049
- China
| | - Deping Hu
- Qingdao Institute of Bioenergy and Bioprocess Technology
- Chinese Academy of Sciences
- Qingdao
- China
| | - Xiuxing Zhang
- Department of Physics
- Weinan Normal University
- Weinan 714000
- China
| | - Di Zhao
- Key Laboratory for Quantum Information and Quantum Optoelectronic Devices Shaanxi, and Department of Applied Physics
- Xi’an Jiaotong University
- Xi’an 710049
- China
| | - Dongdong Wang
- Department of Applied Chemistry
- School of Science
- Xi’an Jiaotong University
- Xi’an 710049
- China
| | - Zhenggang Lan
- Qingdao Institute of Bioenergy and Bioprocess Technology
- Chinese Academy of Sciences
- Qingdao
- China
| | - Fuli Li
- Key Laboratory for Quantum Information and Quantum Optoelectronic Devices Shaanxi, and Department of Applied Physics
- Xi’an Jiaotong University
- Xi’an 710049
- China
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