Evolutionary significance of the variation in acoustic communication of a cryptic nocturnal primate radiation (Microcebus spp.)

Meta-analysis of the acoustic adaptation hypothesis reveals no support for the effect of vegetation structure on acoustic signalling across terrestrial vertebrates

Acoustic communication plays a prominent role in various ecological and evolutionary processes involving social interactions. The properties of acoustic signals are thought to be influenced not only by the interaction between signaller and receiver but also by the acoustic characteristics of the environment through which the signal is transmitted. This conjecture forms the core of the so-called "acoustic adaptation hypothesis" (AAH), which posits that vegetation structure affects frequency and temporal parameters of acoustic signals emitted by a signaller as a function of their acoustic degradation properties. Specifically, animals in densely vegetated "closed habitats" are expected to produce longer acoustic signals with lower repetition rates and lower frequencies (minimum, mean, maximum, and peak) compared to those inhabiting less-vegetated "open habitats". To date, this hypothesis has received mixed results, with the level of support depending on the taxonomic group and the methodology used. We conducted a systematic literature search of empirical studies testing for an effect of vegetation structure on acoustic signalling and assessed the generality of the AAH using a meta-analytic approach based on 371 effect sizes from 75 studies and 57 taxa encompassing birds, mammals and amphibians. Overall, our results do not provide consistent support for the AAH, neither in within-species comparisons (suggesting no overall phenotypically plastic response of acoustic signalling to vegetation structure) nor in among-species comparisons (suggesting no overall evolutionary response). However, when considering birds only, we found weak support for the AAH in within-species comparisons, which was mainly driven by studies that measured frequency bandwidth, suggesting that this variable may exhibit a phenotypically plastic response to vegetation structure. For among-species comparisons in birds, we also found support for the AAH, but this effect was not significant after excluding comparative studies that did not account for phylogenetic non-independence. Collectively, our synthesis does not support a universal role of vegetation structure in the evolution of acoustic communication. We highlight the need for more empirical work on currently under-studied taxa such as amphibians, mammals, and insects. Furthermore, we propose a framework for future research on the AAH. We specifically advocate for a more detailed and quantitative characterisation of habitats to identify frequencies with the highest detection probability and to determine if frequencies with greater detection distances are preferentially used. Finally, we stress that empirical tests of the AAH should focus on signals that are selected for increased transmission distance.

Cryptic species conservation: a review

Cryptic species are groups of two or more taxa that were previously classified as single nominal species. Being almost morphologically indistinguishable, cryptic species have historically been hard to detect. Only through modern morphometric, genetic, and molecular analyses has the hidden biodiversity of cryptic species complexes been revealed. Cryptic diversity is now widely acknowledged, but unlike more recognisable, charismatic species, scientists face additional challenges when studying cryptic taxa and protecting their wild populations. Demographical and ecological data are vital to facilitate and inform successful conservation actions, particularly at the individual species level, yet this information is lacking for many cryptic species due to their recent taxonomic description and lack of research attention. The first part of this article summarises cryptic speciation and diversity, and explores the numerous barriers and considerations that conservation biologists must navigate to detect, study and manage cryptic species populations effectively. The second part of the article seeks to address how we can overcome the challenges associated with efficiently and non-invasively detecting cryptic species in-situ, and filling vital knowledge gaps that are currently inhibiting applied conservation. The final section discusses future directions, and suggests that large-scale, holistic, and collaborative approaches that build upon successful existing applications will be vital for cryptic species conservation. This article also acknowledges that sufficient data to implement effective species-specific conservation will be difficult to attain for many cryptic animals, and protected area networks will be vital for their conservation in the short term.

Ultrasonic Differentiation Between Two Species of Chinese Pygmy Dormice (Genus Typhlomys) With Support for the Size-Signal Allometry Hypothesis

The genus Typhlomys comprises six species that all exhibit exceptional climbing agility in arboreal habitats, of which five have been established to use ultrasonic echolocation in the 80-120-kHz frequency range to navigate among tree branches. Here, we investigated the ultrasonic vocalizations of the remaining and recently recognized species, T. fengjiensis, and compared its ultrasonic and morphological traits with its sibling species T. daloushanensis. Both species produced frequency-modulated (FM) ultrasonic calls that lacked harmonic structure, consistent with echolocating calls established for other members of this genus Typhlomys. This FM echolocation call structure is well-adapted to navigating along branches in dense foliage conditions in the forest understory. Importantly, however, the specific call structures of T. fengjiensis and T. daloushanensis exhibited significantly different ultrasonic characteristics, with different numbers of pulse groups, in support of phonic speciation. T. fengjiensis was on average larger than T. daloushanensis and vocalized at a lower frequency and for a longer duration, in support of the signal-size allometry hypothesis. Furthermore, T. fengjiensis has the lowest ultrasonic call frequency among Typhlomys spp., corresponding with it being the largest member of this genus. Bergmann's law does not provide a compelling explanation of the body mass differences between T. fengjiensis and T. daloushanensis, due to the likely overlap in their elevational distribution. Further research is needed to establish if differences in habitat selection and diet, or differences in social and reproductive behavior, might best explain this local species divergence based on phonic traits.

RADseq data reveal a lack of admixture in a mouse lemur contact zone contrary to previous microsatellite results

Microsatellites have been a workhorse of evolutionary genetic studies for decades and are still commonly in use for estimating signatures of genetic diversity at the population and species level across a multitude of taxa. Yet, the very high mutation rate of these loci is a double-edged sword, conferring great sensitivity at shallow levels of analysis (e.g. paternity analysis) but yielding considerable uncertainty for deeper evolutionary comparisons. For the present study, we used reduced representation genome-wide data (restriction site-associated DNA sequencing (RADseq)) to test for patterns of interspecific hybridization previously characterized using microsatellite data in a contact zone between two closely related mouse lemur species in Madagascar (Microcebus murinus and Microcebus griseorufus). We revisit this system by examining populations in, near, and far from the contact zone, including many of the same individuals that had previously been identified as hybrids with microsatellite data. Surprisingly, we find no evidence for admixed nuclear ancestry. Instead, re-analyses of microsatellite data and simulations suggest that previously inferred hybrids were false positives and that the program NewHybrids can be particularly sensitive to erroneously inferring hybrid ancestry. Combined with results from coalescent-based analyses and evidence for local syntopic co-occurrence, we conclude that the two mouse lemur species are in fact completely reproductively isolated, thus providing a new understanding of the evolutionary rate whereby reproductive isolation can be achieved in a primate.

Utilizing DeepSqueak for automatic detection and classification of mammalian vocalizations: a case study on primate vocalizations

Bioacoustic analyses of animal vocalizations are predominantly accomplished through manual scanning, a highly subjective and time-consuming process. Thus, validated automated analyses are needed that are usable for a variety of animal species and easy to handle by non-programing specialists. This study tested and validated whether DeepSqueak, a user-friendly software, developed for rodent ultrasonic vocalizations, can be generalized to automate the detection/segmentation, clustering and classification of high-frequency/ultrasonic vocalizations of a primate species. Our validation procedure showed that the trained detectors for vocalizations of the gray mouse lemur (Microcebus murinus) can deal with different call types, individual variation and different recording quality. Implementing additional filters drastically reduced noise signals (4225 events) and call fragments (637 events), resulting in 91% correct detections (N_total = 3040). Additionally, the detectors could be used to detect the vocalizations of an evolutionary closely related species, the Goodman’s mouse lemur (M. lehilahytsara). An integrated supervised classifier classified 93% of the 2683 calls correctly to the respective call type, and the unsupervised clustering model grouped the calls into clusters matching the published human-made categories. This study shows that DeepSqueak can be successfully utilized to detect, cluster and classify high-frequency/ultrasonic vocalizations of other taxa than rodents, and suggests a validation procedure usable to evaluate further bioacoustics software.

Evidence for vocal diversity during physical interference at the perch in sympatric Carollia species (Chiroptera: Phyllostomidae): a key to social organization and species coexistence?

Vocal diversity might reflect the social organization and sustain the coexistence of cryptic species in sympatry. To test the extent to which vocal behaviour separates sympatric, cryptic species of a bat radiation, we compared vocalizations of genetically confirmed Carollia castanea, Carollia sowelli and Carollia perspicillata emitted by intraspecific dyads of identified individuals during corresponding physical interference interactions at the perch. Video analysis revealed a similar behaviour and interaction time across species. A sonagram-based visual classification of vocalization syllables of uninterrupted frequency–time contour discriminated 21 syllable classes. Class usage and distribution of the four shared classes differed across species. Carollia sowelli emitted the lowest number of classes in total and per interaction across species and displayed a limited number of syllable compositions in bouts. Discriminant analyses of syllables of a common, shared class provided evidence for species distinctiveness and individual-specific signatures. In general, sex did not account for data variability. The present vocalizations combine syllables reported from aggressive and submissive contexts in C. perspicillata and might express experienced ambivalence during interference at the perch. The diversity of vocal behaviour across congeners is discussed as arising from different ecological pressures during allopatric speciation and as an indicator of differences in species social organization.