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Tancheva G, Hongisto V, Patyra K, Iliev L, Kochev N, Nymark P, Kohonen P, Jeliazkova N, Grafström R. High-throughput screening data generation, scoring and FAIRification: a case study on nanomaterials. J Cheminform 2025; 17:59. [PMID: 40269950 PMCID: PMC12020062 DOI: 10.1186/s13321-025-01001-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2024] [Accepted: 03/30/2025] [Indexed: 04/25/2025] Open
Abstract
In vitro-based high-throughput screening (HTS) technology is applicable to hazard-based ranking and grouping of diverse agents, including nanomaterials (NMs). We present a standardized HTS-derived human cell-based testing protocol which combines the analysis of five assays into a broad toxic mode-of-action-based hazard value, termed Tox5-score. The overall protocol includes automated data FAIRification, preprocessing and score calculation. A newly developed Python module ToxFAIRy can be used independently or within an Orange Data Mining workflow that has custom widgets for fine-tuning, included in the custom-developed Orange add-on Orange3-ToxFAIRy. The created data-handling workflow has the advantage of facilitated conversion of the FAIR HTS data into the NeXus format, capable of integrating all data and metadata into a single file and multidimensional matrix amenable to interactive visualizations and selection of data subsets. The resulting FAIR HTS data includes both raw and interpreted data (scores) in machine-readable formats distributable as data archive, including into the eNanoMapper database and Nanosafety Data Interface. We overall present a HTS-driven FAIRifed computational assessment tool for hazard analysis of multiple agents simultaneously, including with broad potential applicability across diverse scientific communities.Scientific Contribution Our study represents significant tool development for analyzing multiple materials hazards rapidly and simultaneously, aligning with regulatory recommendations and addressing industry needs. The innovative integration of in vitro-based toxicity scoring with automated data preprocessing within FAIRification workflows enhances the applicability of HTS-derived data application in the materials development community. The protocols described increase the effectiveness of materials toxicity testing and mode-of-action research by offering an alternative to manual data processing, enrichment of HTS data with metadata, refining testing methodologies-such as for bioactivity-based grouping-and overall, demonstrates the value of reusing existing data.
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Affiliation(s)
- Gergana Tancheva
- Ideaconsult Ltd., 4 Angel Kanchev Str, 1000, Sofia, Bulgaria.
- Department of Analytical Chemistry and Computer Chemistry, Faculty of Chemistry, University of Plovdiv, 24 Tsar Assen St, 4000, Plovdiv, Bulgaria.
| | - Vesa Hongisto
- Division of Toxicology, Misvik Biology, Karjakatu 35 B, 20520, Turku, Finland
| | - Konrad Patyra
- Division of Toxicology, Misvik Biology, Karjakatu 35 B, 20520, Turku, Finland
| | - Luchesar Iliev
- Ideaconsult Ltd., 4 Angel Kanchev Str, 1000, Sofia, Bulgaria
| | - Nikolay Kochev
- Ideaconsult Ltd., 4 Angel Kanchev Str, 1000, Sofia, Bulgaria
- Department of Analytical Chemistry and Computer Chemistry, Faculty of Chemistry, University of Plovdiv, 24 Tsar Assen St, 4000, Plovdiv, Bulgaria
| | - Penny Nymark
- Institute of Environmental Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden
| | - Pekka Kohonen
- Institute of Environmental Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden
| | - Nina Jeliazkova
- Ideaconsult Ltd., 4 Angel Kanchev Str, 1000, Sofia, Bulgaria
| | - Roland Grafström
- Division of Toxicology, Misvik Biology, Karjakatu 35 B, 20520, Turku, Finland
- Institute of Environmental Medicine, Karolinska Institutet, 171 77, Stockholm, Sweden
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Exner TE, Dokler J, Friedrichs S, Seitz C, Bleken FL, Friis J, Hagelien TF, Mercuri F, Costa AL, Furxhi I, Sarimveis H, Afantitis A, Marvuglia A, Larrea-Gallegos GM, Serchi T, Serra A, Greco D, Nymark P, Himly M, Wiench K, Watzek N, Schillinger EK, Gavillet J, Lynch I, Karwath A, Haywood AL, Gkoutos GV, Hischier R. Going digital to boost safe and sustainable materials innovation markets. The digital safe-and-sustainability-by-design innovation approach of the PINK project. Comput Struct Biotechnol J 2025; 29:110-124. [PMID: 40241813 PMCID: PMC12002836 DOI: 10.1016/j.csbj.2025.03.019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2025] [Revised: 03/10/2025] [Accepted: 03/11/2025] [Indexed: 04/18/2025] Open
Abstract
In this innovation report, we present the vision of the PINK project to foster Safe-and-Sustainable-by-Design (SSbD) advanced materials and chemicals (AdMas&Chems) development by integrating state-of-the-art computational modelling, simulation tools and data resources. PINK proposes a novel approach for the use of the SSbD Framework, whose innovative approach is based on the application of a multi-objective optimisation procedure for the criteria of functionality, safety, sustainability and cost efficiency. At the core is the PINK open innovation platform, a distributed system that integrates all relevant modelling resources enriched with advanced data visualisation and an AI-driven decision support system. Data and modelling tools from the, in large parts, independently developed areas of functional design, safety assessment, life cycle assessment & costing are brought together based on a newly created Interoperability Framework. The PINK In Silico Hub, as the user Interface to the platform, finally guides the user through the complete AdMas&Chems development process from idea creation to market introduction. Guided by two Developmental Case Studies, the process of building of the PINK Platform is iterative, ensuring industry readiness to implement and apply it. Additionally, the Industrial Demonstrator programme will be introduced as part of the final project phase, which allows industry partners and especially small and medium enterprises (SMEs) to become part of the PINK consortium. Feedback from the Demonstrators as well as other stakeholder-engagement activities and collaborations will shape the platform's final look and feel and, even more important, activities to assure long-term technical sustainability.
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Affiliation(s)
- Thomas E. Exner
- Seven Past Nine d.o.o., Hribljane, Cerknica 1380, Slovenia
- Seven Past Nine GmbH., Rebacker 6, Schopfheim 79650, Germany
| | - Joh Dokler
- Seven Past Nine d.o.o., Hribljane, Cerknica 1380, Slovenia
| | | | | | | | - Jesper Friis
- SINTEF AS, Strindvegen 4, Trondheim 7034, Norway
| | | | - Francesco Mercuri
- Istituto per lo Studio dei Materiali Nanostrutturati (ISMN), Consiglio Nazionale delle Ricerche, Via P. Gobetti 101, Bologna 40128, Italy
| | - Anna L. Costa
- Istituto di Scienza, Tecnologia e Sostenibilità per lo Sviluppo dei Materiali Ceramici. Consiglio Nationale Delle Ricerche (CNR-ISSMC), Via Granarolo 64, Faenza 48018, Italy
| | - Irini Furxhi
- Istituto di Scienza, Tecnologia e Sostenibilità per lo Sviluppo dei Materiali Ceramici. Consiglio Nationale Delle Ricerche (CNR-ISSMC), Via Granarolo 64, Faenza 48018, Italy
| | - Haralambos Sarimveis
- School of Chemical Engineering, National Technical University of Athens, 9 Heroon Polytechniou, Athens 15780, Greece
| | | | - Antonino Marvuglia
- Luxembourg Institute of Science and Technology, 5, avenue des Hauts-Fourneaux, Esch-sur-Alzette 4362, Luxembourg
| | - Gustavo M. Larrea-Gallegos
- Luxembourg Institute of Science and Technology, 5, avenue des Hauts-Fourneaux, Esch-sur-Alzette 4362, Luxembourg
| | - Tommaso Serchi
- Luxembourg Institute of Science and Technology, 5, avenue des Hauts-Fourneaux, Esch-sur-Alzette 4362, Luxembourg
| | - Angela Serra
- Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere 33520, Finland
- Division of Pharmaceutical Biosciences, Faculty of Pharmacy, University of Helsinki, Helsinki 00790, Finland
| | - Dario Greco
- Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere 33520, Finland
- Division of Pharmaceutical Biosciences, Faculty of Pharmacy, University of Helsinki, Helsinki 00790, Finland
| | - Penny Nymark
- Institute for Environmental Medicine, Karolinska Institutet, Nobels Väg 5, Stockholm 17177, Sweden
| | - Martin Himly
- Department of Biosciences & Medical Biology, Paris Lodron Universität Salzburg, Hellbrunnerstrasse 34, Salzburg 5020, Austria
| | - Karin Wiench
- BASF SE, Carl Bosch Str. 38, Ludwigshafen am Rhein 67056, Germany
| | - Nico Watzek
- BASF SE, Carl Bosch Str. 38, Ludwigshafen am Rhein 67056, Germany
| | | | - Jérôme Gavillet
- Innovative Advanced Materials Initiative, Rue de Ransbeek 310, Bruxelles 1120, Belgium
| | - Iseult Lynch
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
- Centre for Environmental Research and Justice, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Andreas Karwath
- Department of Cancer and Genomic Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
- Centre for Health Data Science, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Alexe L. Haywood
- Department of Cancer and Genomic Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
- Centre for Health Data Science, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Georgios V. Gkoutos
- Centre for Environmental Research and Justice, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
- Department of Cancer and Genomic Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
- Centre for Health Data Science, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Roland Hischier
- Advancing Life Cycle Assessment Group, Swiss Federal Laboratories for Materials Science and Technology, Lerchenfeldstrasse 5, St. Gallen 9014, Switzerland
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Cassee FR, Bleeker EA, Durand C, Exner T, Falk A, Friedrichs S, Heunisch E, Himly M, Hofer S, Hofstätter N, Hristozov D, Nymark P, Pohl A, Soeteman-Hernández LG, Suarez-Merino B, Valsami-Jones E, Groenewold M. Roadmap towards safe and sustainable advanced and innovative materials. (Outlook for 2024-2030). Comput Struct Biotechnol J 2024; 25:105-126. [PMID: 38974014 PMCID: PMC11225617 DOI: 10.1016/j.csbj.2024.05.018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Revised: 05/08/2024] [Accepted: 05/08/2024] [Indexed: 07/09/2024] Open
Abstract
The adoption of innovative advanced materials holds vast potential, contingent upon addressing safety and sustainability concerns. The European Commission advocates the integration of Safe and Sustainable by Design (SSbD) principles early in the innovation process to streamline market introduction and mitigate costs. Within this framework, encompassing ecological, social, and economic factors is paramount. The NanoSafety Cluster (NSC) delineates key safety and sustainability areas, pinpointing unresolved issues and research gaps to steer the development of safe(r) materials. Leveraging FAIR data management and integration, alongside the alignment of regulatory aspects, fosters informed decision-making and innovation. Integrating circularity and sustainability mandates clear guidance, ensuring responsible innovation at every stage. Collaboration among stakeholders, anticipation of regulatory demands, and a commitment to sustainability are pivotal for translating SSbD into tangible advancements. Harmonizing standards and test guidelines, along with regulatory preparedness through an exchange platform, is imperative for governance and market readiness. By adhering to these principles, the effective and sustainable deployment of innovative materials can be realized, propelling positive transformation and societal acceptance.
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Affiliation(s)
- Flemming R. Cassee
- National Institute of Public Health and the Environment (RIVM), the Netherlands & Institute for Risk Assessment Sciences, Utrecht University, Utrecht, the Netherlands
| | - Eric A.J. Bleeker
- National Institute of Public Health and the Environment (RIVM), the Netherlands
| | | | | | - Andreas Falk
- BioNanoNet Forschungsgesellschaft mbH (BNN), Austria
| | | | | | | | | | | | | | - Penny Nymark
- Institute of Environmental Medicine, Karolinska Institute, Solna, Sweden
| | - Anna Pohl
- Federal Institute for Occupational Safety and Health (BAuA), Germany
| | | | | | - Eugenia Valsami-Jones
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham, United Kingdom
| | - Monique Groenewold
- National Institute of Public Health and the Environment (RIVM), the Netherlands
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Wu J, Gupta G, Buerki-Thurnherr T, Nowack B, Wick P. Bridging the gap: Innovative human-based in vitro approaches for nanomaterials hazard assessment and their role in safe and sustainable by design, risk assessment, and life cycle assessment. NANOIMPACT 2024; 36:100533. [PMID: 39454678 DOI: 10.1016/j.impact.2024.100533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2024] [Revised: 10/22/2024] [Accepted: 10/22/2024] [Indexed: 10/28/2024]
Abstract
The application of nanomaterials in industry and consumer products is growing exponentially, which has pressed the development and use of predictive human in vitro models in pre-clinical analysis to closely extrapolate potential toxic effects in vivo. The conventional cytotoxicity investigation of nanomaterials using cell lines from cancer origin and culturing them two-dimensionally in a monolayer without mimicking the proper pathophysiological microenvironment may affect a precise prediction of in vitro effects at in vivo level. In recent years, complex in vitro models (also belonging to the new approach methodologies, NAMs) have been established in unicellular to multicellular cultures either by using cell lines, primary cells or induced pluripotent stem cells (iPSCs), and reconstituted into relevant biological dimensions mimicking in vivo conditions. These advanced in vitro models retain physiologically reliant exposure scenarios particularly appropriate for oral, dermal, respiratory, and intravenous administration of nanomaterials, which have the potential to improve the in vivo predictability and lead to reliable outcomes. In this perspective, we discuss recent developments and breakthroughs in using advanced human in vitro models for hazard assessment of nanomaterials. We identified fit-for-purpose requirements and remaining challenges for the successful implementation of in vitro data into nanomaterials Safe and Sustainable by Design (SSbD), Risk Assessment (RA), and Life Cycle Assessment (LCA). By addressing the gap between in vitro data generation and the utility of in vitro data for nanomaterial safety assessments, a prerequisite for SSbD approaches, we outlined potential key areas for future development.
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Affiliation(s)
- Jimeng Wu
- Empa, Swiss Federal Laboratories for Materials Science and Technology, Particles-Biology Interactions Laboratory, Lerchenfeldstrasse 5, 9014 St. Gallen, Switzerland; Empa, Swiss Federal Laboratories for Materials Science and Technology, Technology and Society Laboratory, Lerchenfeldstrasse 5, 9014 St. Gallen, Switzerland
| | - Govind Gupta
- Empa, Swiss Federal Laboratories for Materials Science and Technology, Particles-Biology Interactions Laboratory, Lerchenfeldstrasse 5, 9014 St. Gallen, Switzerland
| | - Tina Buerki-Thurnherr
- Empa, Swiss Federal Laboratories for Materials Science and Technology, Particles-Biology Interactions Laboratory, Lerchenfeldstrasse 5, 9014 St. Gallen, Switzerland
| | - Bernd Nowack
- Empa, Swiss Federal Laboratories for Materials Science and Technology, Technology and Society Laboratory, Lerchenfeldstrasse 5, 9014 St. Gallen, Switzerland
| | - Peter Wick
- Empa, Swiss Federal Laboratories for Materials Science and Technology, Particles-Biology Interactions Laboratory, Lerchenfeldstrasse 5, 9014 St. Gallen, Switzerland.
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Hristozov D, Badetti E, Bigini P, Brunelli A, Dekkers S, Diomede L, Doak SH, Fransman W, Gajewicz-Skretna A, Giubilato E, Gómez-Cuadrado L, Grafström R, Gutleb AC, Halappanavar S, Hischier R, Hunt N, Katsumiti A, Kermanizadeh A, Marcomini A, Moschini E, Oomen A, Pizzol L, Rumbo C, Schmid O, Shandilya N, Stone V, Stoycheva S, Stoeger T, Merino BS, Tran L, Tsiliki G, Vogel UB, Wohlleben W, Zabeo A. Next Generation Risk Assessment approaches for advanced nanomaterials: Current status and future perspectives. NANOIMPACT 2024; 35:100523. [PMID: 39059749 DOI: 10.1016/j.impact.2024.100523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Revised: 07/10/2024] [Accepted: 07/17/2024] [Indexed: 07/28/2024]
Abstract
This manuscript discusses the challenges of applying New Approach Methodologies (NAMs) for safe by design and regulatory risk assessment of advanced nanomaterials (AdNMs). The authors propose a framework for Next Generation Risk Assessment of AdNMs involving NAMs that is aligned to the conventional risk assessment paradigm. This framework is exposure-driven, endpoint-specific, makes best use of pre-existing information, and can be implemented in tiers of increasing specificity and complexity of the adopted NAMs. The tiered structure of the approach, which effectively combines the use of existing data with targeted testing will allow safety to be assessed cost-effectively and as far as possible with even more limited use of vertebrates. The regulatory readiness of state-of-the-art emerging NAMs is assessed in terms of Transparency, Reliability, Accessibility, Applicability, Relevance and Completeness, and their appropriateness for AdNMs is discussed in relation to each step of the risk assessment paradigm along with providing perspectives for future developments in the respective scientific and regulatory areas.
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Affiliation(s)
- Danail Hristozov
- East European Research and Innovation Enterprise (EMERGE), Otets Paisiy Str. 46, 1303 Sofa, Bulgaria.
| | - Elena Badetti
- Department of Environmental Sciences, Informatics and Statistics, Ca' Foscari University of Venice, Via Torino 155, 30172 Venice, Italy
| | - Paolo Bigini
- Department of Biochemistry and Molecular Pharmacology, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri 2, 20156 Milano, Italy
| | - Andrea Brunelli
- Department of Environmental Sciences, Informatics and Statistics, Ca' Foscari University of Venice, Via Torino 155, 30172 Venice, Italy
| | - Susan Dekkers
- Netherlands Organisation for Applied Scientific Research (TNO), Princetonlaan 6, 3584 CB Utrecht, the Netherlands
| | - Luisa Diomede
- Department of Biochemistry and Molecular Pharmacology, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri 2, 20156 Milano, Italy
| | - Shareen H Doak
- Swansea University Medical School, Faculty of Medicine, Health & Life Science, Singleton Park, Swansea SA2 8PP, United Kingdom
| | - Wouter Fransman
- Netherlands Organisation for Applied Scientific Research (TNO), Princetonlaan 6, 3584 CB Utrecht, the Netherlands
| | - Agnieszka Gajewicz-Skretna
- Laboratory of Environmental Chemoinformatics, Faculty of Chemistry, University of Gdansk, Wita Stwosza 63, 80-309 Gdansk, Poland
| | - Elisa Giubilato
- GreenDecision Srl, Cannaregio 5904, 30121 Venezia, VE, Italy
| | - Laura Gómez-Cuadrado
- International Research Center in Critical Raw Materials for Advanced Industrial Technologies-ICCRAM, Universidad de Burgos, Plaza Misael Bañuelos s/n, Burgos 09001, Spain
| | - Roland Grafström
- Institute of Environmental Medicine, Karolinska Institutet, Nobels väg 13, 17177 Stockholm, Sweden
| | - Arno C Gutleb
- Luxemburg Institute of Science and Technology (LIST), 41, rue du Brill, L-4422 Belvaux, Luxembourg
| | - Sabina Halappanavar
- Environmental Health Science and Research Bureau, Health Canada, 251 Sir Frederick Banting Building, Banting Driveway, Ottawa, Ontario K1A 0K9, Canada
| | - Roland Hischier
- Swiss Federal Laboratories for Materials Science and Technology (EMPA), Lerchenfeldstrasse 5, 9014 St. Gallen, Switzerland
| | - Neil Hunt
- Yordas Group, Lancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, United Kingdom
| | - Alberto Katsumiti
- GAIKER Technology Centre, Basque Research and Technology Alliance (BRTA), Zamudio, Spain
| | - Ali Kermanizadeh
- University of Derby, College of Science and Engineering, Kedleston Road, Derby DE22 1GB, United Kingdom
| | - Antonio Marcomini
- Department of Environmental Sciences, Informatics and Statistics, Ca' Foscari University of Venice, Via Torino 155, 30172 Venice, Italy
| | - Elisa Moschini
- Luxemburg Institute of Science and Technology (LIST), 41, rue du Brill, L-4422 Belvaux, Luxembourg; Heriot-Watt University, School of Engineering and Physical Sciences (EPS), Institute of Biological Chemistry, Biophysics and Bioengineering (IB3), David Brewster Building, Edinburgh EH14 4AS, United Kingdom
| | - Agnes Oomen
- National Institute for Public Health and the Environment (RIVM), Center for Safety of Substances and Products, Antonie van Leeuwenhoeklaan 9, 3721 MA Bilthoven, the Netherlands
| | - Lisa Pizzol
- GreenDecision Srl, Cannaregio 5904, 30121 Venezia, VE, Italy
| | - Carlos Rumbo
- International Research Center in Critical Raw Materials for Advanced Industrial Technologies-ICCRAM, Universidad de Burgos, Plaza Misael Bañuelos s/n, Burgos 09001, Spain
| | - Otmar Schmid
- Helmholtz Munich, Ingolstädter Landstraße 1, 85764 Neuherberg, Germany
| | - Neeraj Shandilya
- Netherlands Organisation for Applied Scientific Research (TNO), Princetonlaan 6, 3584 CB Utrecht, the Netherlands
| | - Vicki Stone
- Heriot-Watt University, School of Engineering and Physical Sciences (EPS), Institute of Biological Chemistry, Biophysics and Bioengineering (IB3), David Brewster Building, Edinburgh EH14 4AS, United Kingdom
| | - Stella Stoycheva
- Yordas Group, Lancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, United Kingdom
| | - Tobias Stoeger
- Helmholtz Munich, Ingolstädter Landstraße 1, 85764 Neuherberg, Germany
| | | | - Lang Tran
- Institute of Occupational Medicine (IOM), Research Avenue North, Riccarton, Edinburgh EH14 4AP, United Kingdom
| | - Georgia Tsiliki
- Purposeful IKE, Tritis Septembriou 144, Athens 11251, Greece
| | - Ulla Birgitte Vogel
- The National Research Centre for the Working Environment, Lersø Parkallé 105, DK-2100 Copenhagen, Denmark
| | - Wendel Wohlleben
- BASF SE, RGA/AP - B7, Carl-Bosch-Strasse 38, 67056 Ludwigshafen am Rhein, Germany
| | - Alex Zabeo
- GreenDecision Srl, Cannaregio 5904, 30121 Venezia, VE, Italy
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Sudheshwar A, Apel C, Kümmerer K, Wang Z, Soeteman-Hernández LG, Valsami-Jones E, Som C, Nowack B. Learning from Safe-by-Design for Safe-and-Sustainable-by-Design: Mapping the current landscape of Safe-by-Design reviews, case studies, and frameworks. ENVIRONMENT INTERNATIONAL 2024; 183:108305. [PMID: 38048736 DOI: 10.1016/j.envint.2023.108305] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 10/31/2023] [Accepted: 11/03/2023] [Indexed: 12/06/2023]
Abstract
With the introduction of the European Commission's "Safe and Sustainable-by-Design" (SSbD) framework, the interest in understanding the implications of safety and sustainability assessments of chemicals, materials, and processes at early-innovation stages has skyrocketed. Our study focuses on the "Safe-by-Design" (SbD) approach from the nanomaterials sector, which predates the SSbD framework. In this assessment, SbD studies have been compiled and categorized into reviews, case studies, and frameworks. Reviews of SbD tools have been further classified as quantitative, qualitative, or toolboxes and repositories. We assessed the SbD case studies and classified them into three categories: safe(r)-by-modeling, safe(r)-by-selection, or safe(r)-by-redesign. This classification enabled us to understand past SbD work and subsequently use it to define future SSbD work so as to avoid confusion and possibilities of "SSbD-washing" (similar to greenwashing). Finally, the preexisting SbD frameworks have been studied and contextualized against the SSbD framework. Several key recommendations for SSbD based on our analysis can be made. Knowledge gained from existing approaches such as SbD, green and sustainable chemistry, and benign-by-design approaches needs to be preserved and effectively transferred to SSbD. Better incorporation of chemical and material functionality into the SSbD framework is required. The concept of lifecycle thinking and the stage-gate innovation model need to be reconciled for SSbD. The development of high-throughput screening models is critical for the operationalization of SSbD. We conclude that the rapid pace of both SbD and SSbD development necessitates a regular mapping of the newly published literature that is relevant to this field.
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Affiliation(s)
- Akshat Sudheshwar
- Empa - Swiss Federal Laboratories for Material Science and Technology, Technology and Society Laboratory, Lerchenfeldstrasse 5, 9014 St. Gallen, Switzerland
| | - Christina Apel
- Leuphana University of Lüneburg, Institute of Sustainable Chemistry, Lüneburg, Germany
| | - Klaus Kümmerer
- Leuphana University of Lüneburg, Institute of Sustainable Chemistry, Lüneburg, Germany; International Sustainable Chemistry Collaborative Centre (ISC3), Bonn, Germany
| | - Zhanyun Wang
- Empa - Swiss Federal Laboratories for Material Science and Technology, Technology and Society Laboratory, Lerchenfeldstrasse 5, 9014 St. Gallen, Switzerland
| | - Lya G Soeteman-Hernández
- National Institute for Public Health and the Environment (RIVM), Center for Safety of Substances and Products, Bilthoven, The Netherlands
| | | | - Claudia Som
- Empa - Swiss Federal Laboratories for Material Science and Technology, Technology and Society Laboratory, Lerchenfeldstrasse 5, 9014 St. Gallen, Switzerland
| | - Bernd Nowack
- Empa - Swiss Federal Laboratories for Material Science and Technology, Technology and Society Laboratory, Lerchenfeldstrasse 5, 9014 St. Gallen, Switzerland.
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7
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Motta G, Gualtieri M, Bengalli R, Saibene M, Belosi F, Nicosia A, Cabellos J, Mantecca P. An integrated new approach methodology for inhalation risk assessment of safe and sustainable by design nanomaterials. ENVIRONMENT INTERNATIONAL 2024; 183:108420. [PMID: 38199131 DOI: 10.1016/j.envint.2024.108420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Revised: 12/12/2023] [Accepted: 01/02/2024] [Indexed: 01/12/2024]
Abstract
The production and use of nanomaterials (NMs) has increased over the last decades posing relevant questions on their risk after release and exposure of the population or sub-populations. In this context, the safe and sustainable by design (SSbD) approach framework requires to assess the potential hazard connected with intrinsic properties of the material along the whole life cycle of the NM and/or of the nano enabled products. Moreover, in the last years, the use of new advanced methodologies (NAMs) has increasingly gained attention for the use of alternative methods in obtaining relevant information on NMs hazard and risk. Considering the SSbD and the NAMs frameworks, within the ASINA H2020 project, we developed new NAMs devoted at improving the hazard and risk definition of different Ag and TiO2 NPs. The NAMs are developed considering two air liquid interface exposure systems, the Vitrocell Cloud-α and the Cultex Compact module and the relevant steps to obtain reproducible exposures are described. The new NAMs build on the integration of environmental monitoring campaigns at nano-coating production sites, allowing the quantification by the multiple-path particle dosimetry (MPPD) model of the expected lung deposited dose in occupational settings. Starting from this information, laboratory exposures to the aerosolized NPs are performed by using air liquid interface exposure equipment and human alveolar cells (epithelial cells and macrophages), replicating the doses of exposure estimated in workers by MPPD. Preliminary results on cell viability and inflammatory responses are reported. The proposed NAMs may represent possible future reference procedures for assessing the NPs inhalation toxicology, supporting risk assessment at real exposure doses.
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Affiliation(s)
- Giulia Motta
- University of Milano Bicocca, Department of Biotechnology and Biosciences, Piazza della Scienza 2, 20126 Milano, Italy; Research Centre POLARIS, Department of Earth and Environmental Sciences, University of Milano Bicocca, 20126 Milano, Italy.
| | - Maurizio Gualtieri
- Research Centre POLARIS, Department of Earth and Environmental Sciences, University of Milano Bicocca, 20126 Milano, Italy.
| | - Rossella Bengalli
- Research Centre POLARIS, Department of Earth and Environmental Sciences, University of Milano Bicocca, 20126 Milano, Italy
| | - Melissa Saibene
- Centre for Advanced Microscopy, University of Milano-Bicocca, Piazza della Scienza 2, 20126 Milano, Italy
| | - Franco Belosi
- CNR-ISAC, Institute of Atmospheric Sciences and Climate, National Research Council of Italy, Via Gobetti, 101, 40129 Bologna, Italy
| | - Alessia Nicosia
- CNR-ISAC, Institute of Atmospheric Sciences and Climate, National Research Council of Italy, Via Gobetti, 101, 40129 Bologna, Italy
| | - Joan Cabellos
- Leitat Technological Center, c/de la Innovació 2, Terrassa, 08225 Barcelona, Spain
| | - Paride Mantecca
- Research Centre POLARIS, Department of Earth and Environmental Sciences, University of Milano Bicocca, 20126 Milano, Italy
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8
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Shao G, Beronius A, Nymark P. SciRAPnano: a pragmatic and harmonized approach for quality evaluation of in vitro toxicity data to support risk assessment of nanomaterials. FRONTIERS IN TOXICOLOGY 2023; 5:1319985. [PMID: 38046400 PMCID: PMC10691260 DOI: 10.3389/ftox.2023.1319985] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 10/30/2023] [Indexed: 12/05/2023] Open
Abstract
Large amounts of nanotoxicity data from alternative non-animal (in vitro) test methods have been generated, but there is a lack of harmonized quality evaluation approaches for these types of data. Tools for scientifically sound and structured evaluation of the reliability and relevance of in vitro toxicity data to effectively inform regulatory hazard assessment of nanomaterials (NMs), are needed. Here, we present the development of a pragmatic approach to facilitate such evaluation. The tool was developed based on the Science in Risk Assessment and Policy (SciRAP) tool currently applicable to quality evaluation of chemical toxicity studies. The approach taken to develop the tool, referred to as SciRAPnano, included refinement of the original SciRAP in vitro tool through implementation of identified NM-relevant criteria, and further refined based on a set of case studies involving evaluation of 11 studies investigating in vitro toxicity of nano-sized titanium dioxide. Parameters considered cover key physicochemical properties as well as assay-specific aspects that impact NM toxicity, including NM interference with test methods and NM transformation. The final SciRAPnano tool contains 38 criteria for reporting quality, 19 criteria for methodological quality, and 4 guidance items to evaluate relevance. The approach covers essential parameters for pragmatic and harmonized evaluation of NM in vitro toxicity studies and allows for structured use of in vitro data in regulatory hazard assessment of NMs, including transparency on data quality.
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Affiliation(s)
| | | | - Penny Nymark
- Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden
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9
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Soltysova A, Begerova P, Jakic K, Kozics K, Sramkova M, Meese E, Smolkova B, Gabelova A. Genome-wide DNA methylome and transcriptome changes induced by inorganic nanoparticles in human kidney cells after chronic exposure. Cell Biol Toxicol 2023; 39:1939-1956. [PMID: 34973136 PMCID: PMC10547624 DOI: 10.1007/s10565-021-09680-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2021] [Accepted: 11/11/2021] [Indexed: 11/02/2022]
Abstract
The unique physicochemical properties make inorganic nanoparticles (INPs) an exciting tool in diagnosis and disease management. However, as INPs are relatively difficult to fully degrade and excrete, their unintended accumulation in the tissue might result in adverse health effects. Herein, we provide a methylome-transcriptome framework for chronic effects of INPs, commonly used in biomedical applications, in human kidney TH-1 cells. Renal clearance is one of the most important routes of nanoparticle excretion; therefore, a detailed evaluation of nanoparticle-mediated nephrotoxicity is an important task. Integrated analysis of methylome and transcriptome changes induced by INPs (PEG-AuNPs, Fe3O4NPs, SiO2NPs, and TiO2NPs) revealed significantly deregulated genes with functional classification in immune response, DNA damage, and cancer-related pathways. Although most deregulated genes were unique to individual INPs, a relatively high proportion of them encoded the transcription factors. Interestingly, FOS hypermethylation inversely correlating with gene expression was associated with all INPs exposures. Our study emphasizes the need for a more comprehensive investigation of INPs' biological safety, especially after chronic exposure.
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Affiliation(s)
- Andrea Soltysova
- Department of Molecular Biology, Faculty of Natural Sciences, Comenius University in Bratislava, Ilkovicova 6, 841 04, Bratislava, Slovakia
- Institute of Clinical and Translational Research, Biomedical Research Center, Slovak Academy of Sciences, Dubravska cesta 9, 845 05, Bratislava, Slovakia
| | - Patricia Begerova
- Cancer Research Institute, Biomedical Research Center, Slovak Academy of Sciences, Dubravska cesta 9, 845 05, Bratislava, Slovakia
| | - Kristina Jakic
- Cancer Research Institute, Biomedical Research Center, Slovak Academy of Sciences, Dubravska cesta 9, 845 05, Bratislava, Slovakia
| | - Katarina Kozics
- Cancer Research Institute, Biomedical Research Center, Slovak Academy of Sciences, Dubravska cesta 9, 845 05, Bratislava, Slovakia
| | - Monika Sramkova
- Cancer Research Institute, Biomedical Research Center, Slovak Academy of Sciences, Dubravska cesta 9, 845 05, Bratislava, Slovakia
| | - Eckart Meese
- Institute of Human Genetics, Saarland University, Building 60, 66421, Homburg, Germany
| | - Bozena Smolkova
- Cancer Research Institute, Biomedical Research Center, Slovak Academy of Sciences, Dubravska cesta 9, 845 05, Bratislava, Slovakia
| | - Alena Gabelova
- Cancer Research Institute, Biomedical Research Center, Slovak Academy of Sciences, Dubravska cesta 9, 845 05, Bratislava, Slovakia.
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10
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Fontaine M, Bartolami E, Prono M, Béal D, Blosi M, Costa AL, Ravagli C, Baldi G, Sprio S, Tampieri A, Fenoglio I, Tran L, Fadeel B, Carriere M. Nanomaterial genotoxicity evaluation using the high-throughput p53-binding protein 1 (53BP1) assay. PLoS One 2023; 18:e0288737. [PMID: 37713377 PMCID: PMC10503773 DOI: 10.1371/journal.pone.0288737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Accepted: 07/04/2023] [Indexed: 09/17/2023] Open
Abstract
Toxicity evaluation of engineered nanomaterials is challenging due to the ever increasing number of materials and because nanomaterials (NMs) frequently interfere with commonly used assays. Hence, there is a need for robust, high-throughput assays with which to assess their hazard potential. The present study aimed at evaluating the applicability of a genotoxicity assay based on the immunostaining and foci counting of the DNA repair protein 53BP1 (p53-binding protein 1), in a high-throughput format, for NM genotoxicity assessment. For benchmarking purposes, we first applied the assay to a set of eight known genotoxic agents, as well as X-ray irradiation (1 Gy). Then, a panel of NMs and nanobiomaterials (NBMs) was evaluated with respect to their impact on cell viability and genotoxicity, and to their potential to induce reactive oxygen species (ROS) production. The genotoxicity recorded using the 53BP1 assay was confirmed using the micronucleus assay, also scored via automated (high-throughput) microscopy. The 53BP1 assay successfully identified genotoxic compounds on the HCT116 human intestinal cell line. None of the tested NMs showed any genotoxicity using the 53BP1 assay, except the positive control consisting in (CoO)(NiO) NMs, while only TiO2 NMs showed positive outcome in the micronucleus assay. Only Fe3O4 NMs caused significant elevation of ROS, not correlated to DNA damage. Therefore, owing to its adequate predictivity of the genotoxicity of most of the tested benchmark substance and its ease of implementation in a high throughput format, the 53BP1 assay could be proposed as a complementary high-throughput screening genotoxicity assay, in the context of the development of New Approach Methodologies.
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Affiliation(s)
- Maelle Fontaine
- CEA, CNRS, IRIG, SyMMES-CIBEST, Univ. Grenoble Alpes, Grenoble, France
| | - Eline Bartolami
- CEA, CNRS, IRIG, SyMMES-CIBEST, Univ. Grenoble Alpes, Grenoble, France
| | - Marion Prono
- CEA, CNRS, IRIG, SyMMES-CIBEST, Univ. Grenoble Alpes, Grenoble, France
| | - David Béal
- CEA, CNRS, IRIG, SyMMES-CIBEST, Univ. Grenoble Alpes, Grenoble, France
| | - Magda Blosi
- National Research Council, Institute of Science, Technology and Sustainability for Ceramic Materials ISSMC-CNR (Former ISTEC-CNR), Faenza, Italy
| | - Anna L. Costa
- National Research Council, Institute of Science, Technology and Sustainability for Ceramic Materials ISSMC-CNR (Former ISTEC-CNR), Faenza, Italy
| | - Costanza Ravagli
- Ce.Ri.Col, Colorobbia Consulting S.R.L, Sovigliana-Vinci, Firenze, Italy
| | - Giovanni Baldi
- Ce.Ri.Col, Colorobbia Consulting S.R.L, Sovigliana-Vinci, Firenze, Italy
| | - Simone Sprio
- National Research Council, Institute of Science, Technology and Sustainability for Ceramic Materials ISSMC-CNR (Former ISTEC-CNR), Faenza, Italy
| | - Anna Tampieri
- National Research Council, Institute of Science, Technology and Sustainability for Ceramic Materials ISSMC-CNR (Former ISTEC-CNR), Faenza, Italy
| | - Ivana Fenoglio
- Department of Chemistry, University of Turin, Turin, Italy
| | - Lang Tran
- Institute of Occupational Medicine, Edinburgh, Midlothian, United Kingdom
| | - Bengt Fadeel
- Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden
| | - Marie Carriere
- CEA, CNRS, IRIG, SyMMES-CIBEST, Univ. Grenoble Alpes, Grenoble, France
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11
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Schmeisser S, Miccoli A, von Bergen M, Berggren E, Braeuning A, Busch W, Desaintes C, Gourmelon A, Grafström R, Harrill J, Hartung T, Herzler M, Kass GEN, Kleinstreuer N, Leist M, Luijten M, Marx-Stoelting P, Poetz O, van Ravenzwaay B, Roggeband R, Rogiers V, Roth A, Sanders P, Thomas RS, Marie Vinggaard A, Vinken M, van de Water B, Luch A, Tralau T. New approach methodologies in human regulatory toxicology - Not if, but how and when! ENVIRONMENT INTERNATIONAL 2023; 178:108082. [PMID: 37422975 PMCID: PMC10858683 DOI: 10.1016/j.envint.2023.108082] [Citation(s) in RCA: 93] [Impact Index Per Article: 46.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2023] [Revised: 06/30/2023] [Accepted: 07/01/2023] [Indexed: 07/11/2023]
Abstract
The predominantly animal-centric approach of chemical safety assessment has increasingly come under pressure. Society is questioning overall performance, sustainability, continued relevance for human health risk assessment and ethics of this system, demanding a change of paradigm. At the same time, the scientific toolbox used for risk assessment is continuously enriched by the development of "New Approach Methodologies" (NAMs). While this term does not define the age or the state of readiness of the innovation, it covers a wide range of methods, including quantitative structure-activity relationship (QSAR) predictions, high-throughput screening (HTS) bioassays, omics applications, cell cultures, organoids, microphysiological systems (MPS), machine learning models and artificial intelligence (AI). In addition to promising faster and more efficient toxicity testing, NAMs have the potential to fundamentally transform today's regulatory work by allowing more human-relevant decision-making in terms of both hazard and exposure assessment. Yet, several obstacles hamper a broader application of NAMs in current regulatory risk assessment. Constraints in addressing repeated-dose toxicity, with particular reference to the chronic toxicity, and hesitance from relevant stakeholders, are major challenges for the implementation of NAMs in a broader context. Moreover, issues regarding predictivity, reproducibility and quantification need to be addressed and regulatory and legislative frameworks need to be adapted to NAMs. The conceptual perspective presented here has its focus on hazard assessment and is grounded on the main findings and conclusions from a symposium and workshop held in Berlin in November 2021. It intends to provide further insights into how NAMs can be gradually integrated into chemical risk assessment aimed at protection of human health, until eventually the current paradigm is replaced by an animal-free "Next Generation Risk Assessment" (NGRA).
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Affiliation(s)
| | - Andrea Miccoli
- German Federal Institute for Risk Assessment (BfR), Berlin, Germany; National Research Council, Ancona, Italy
| | - Martin von Bergen
- Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany; German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany; University of Leipzig, Faculty of Life Sciences, Institute of Biochemistry, Leipzig, Germany
| | | | - Albert Braeuning
- German Federal Institute for Risk Assessment (BfR), Berlin, Germany
| | - Wibke Busch
- Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany
| | - Christian Desaintes
- European Commission (EC), Directorate General for Research and Innovation (RTD), Brussels, Belgium
| | - Anne Gourmelon
- Organisation for Economic Cooperation and Development (OECD), Environment Directorate, Paris, France
| | | | - Joshua Harrill
- Center for Computational Toxicology and Exposure (CCTE), United States Environmental Protection Agency (US EPA), Durham, USA
| | - Thomas Hartung
- Center for Alternatives to Animal Testing (CAAT), Johns Hopkins Bloomberg School of Public Health Baltimore MD USA, CAAT-Europe, University of Konstanz, Konstanz, Germany
| | - Matthias Herzler
- German Federal Institute for Risk Assessment (BfR), Berlin, Germany
| | | | - Nicole Kleinstreuer
- NTP Interagency Center for the Evaluation of Alternative Toxicological Methods (NICEATM), National Institute of Environmental Health Sciences (NIEHS), Durham, USA
| | - Marcel Leist
- CAAT‑Europe and Department of Biology, University of Konstanz, Konstanz, Germany
| | - Mirjam Luijten
- Centre for Health Protection, National Institute for Public Health and the Environment (RIVM), Bilthoven, the Netherlands
| | | | - Oliver Poetz
- NMI Natural and Medical Science Institute at the University of Tuebingen, Reutlingen, Germany; SIGNATOPE GmbH, Reutlingen, Germany
| | | | - Rob Roggeband
- European Partnership for Alternative Approaches to Animal Testing (EPAA), Procter and Gamble Services Company NV/SA, Strombeek-Bever, Belgium
| | - Vera Rogiers
- Scientific Committee on Consumer Safety (SCCS), Vrije Universiteit Brussel (VUB), Brussels, Belgium
| | - Adrian Roth
- F. Hoffmann-La Roche Ltd, Basel, Switzerland
| | - Pascal Sanders
- Fougeres Laboratory, French Agency for Food, Environmental and Occupational Health and Safety (ANSES), Fougères, France France
| | - Russell S Thomas
- Center for Computational Toxicology and Exposure (CCTE), United States Environmental Protection Agency (US EPA), Durham, USA
| | | | | | | | - Andreas Luch
- German Federal Institute for Risk Assessment (BfR), Berlin, Germany
| | - Tewes Tralau
- German Federal Institute for Risk Assessment (BfR), Berlin, Germany
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12
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Regulatory safety assessment of nanoparticles for the food chain in Europe. Trends Food Sci Technol 2023. [DOI: 10.1016/j.tifs.2023.01.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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13
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Ruijter N, Soeteman-Hernández LG, Carrière M, Boyles M, McLean P, Catalán J, Katsumiti A, Cabellos J, Delpivo C, Sánchez Jiménez A, Candalija A, Rodríguez-Llopis I, Vázquez-Campos S, Cassee FR, Braakhuis H. The State of the Art and Challenges of In Vitro Methods for Human Hazard Assessment of Nanomaterials in the Context of Safe-by-Design. NANOMATERIALS (BASEL, SWITZERLAND) 2023; 13:472. [PMID: 36770432 PMCID: PMC9920318 DOI: 10.3390/nano13030472] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/23/2022] [Revised: 01/16/2023] [Accepted: 01/18/2023] [Indexed: 06/18/2023]
Abstract
The Safe-by-Design (SbD) concept aims to facilitate the development of safer materials/products, safer production, and safer use and end-of-life by performing timely SbD interventions to reduce hazard, exposure, or both. Early hazard screening is a crucial first step in this process. In this review, for the first time, commonly used in vitro assays are evaluated for their suitability for SbD hazard testing of nanomaterials (NMs). The goal of SbD hazard testing is identifying hazard warnings in the early stages of innovation. For this purpose, assays should be simple, cost-effective, predictive, robust, and compatible. For several toxicological endpoints, there are indications that commonly used in vitro assays are able to predict hazard warnings. In addition to the evaluation of assays, this review provides insights into the effects of the choice of cell type, exposure and dispersion protocol, and the (in)accurate determination of dose delivered to cells on predictivity. Furthermore, compatibility of assays with challenging advanced materials and NMs released from nano-enabled products (NEPs) during the lifecycle is assessed, as these aspects are crucial for SbD hazard testing. To conclude, hazard screening of NMs is complex and joint efforts between innovators, scientists, and regulators are needed to further improve SbD hazard testing.
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Affiliation(s)
- Nienke Ruijter
- National Institute for Public Health & the Environment (RIVM), 3721 MA Bilthoven, The Netherlands
| | | | - Marie Carrière
- Univ. Grenoble-Alpes, CEA, CNRS, SyMMES-CIBEST, 17 rue des Martyrs, 38000 Grenoble, France
| | - Matthew Boyles
- Institute of Occupational Medicine (IOM), Edinburgh EH14 4AP, UK
| | - Polly McLean
- Institute of Occupational Medicine (IOM), Edinburgh EH14 4AP, UK
| | - Julia Catalán
- Finnish Institute of Occupational Health, 00250 Helsinki, Finland
- Department of Anatomy, Embryology and Genetics, University of Zaragoza, 50013 Zaragoza, Spain
| | - Alberto Katsumiti
- GAIKER Technology Centre, Basque Research and Technology Alliance (BRTA), 48170 Zamudio, Spain
| | | | | | | | | | - Isabel Rodríguez-Llopis
- GAIKER Technology Centre, Basque Research and Technology Alliance (BRTA), 48170 Zamudio, Spain
| | | | - Flemming R. Cassee
- National Institute for Public Health & the Environment (RIVM), 3721 MA Bilthoven, The Netherlands
- Institute for Risk Assessment Sciences (IRAS), Utrecht University, 3584 CS Utrecht, The Netherlands
| | - Hedwig Braakhuis
- National Institute for Public Health & the Environment (RIVM), 3721 MA Bilthoven, The Netherlands
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14
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Alijagic A, Scherbak N, Kotlyar O, Karlsson P, Wang X, Odnevall I, Benada O, Amiryousefi A, Andersson L, Persson A, Felth J, Andersson H, Larsson M, Hedbrant A, Salihovic S, Hyötyläinen T, Repsilber D, Särndahl E, Engwall M. A Novel Nanosafety Approach Using Cell Painting, Metabolomics, and Lipidomics Captures the Cellular and Molecular Phenotypes Induced by the Unintentionally Formed Metal-Based (Nano)Particles. Cells 2023; 12:281. [PMID: 36672217 PMCID: PMC9856453 DOI: 10.3390/cells12020281] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Revised: 01/01/2023] [Accepted: 01/09/2023] [Indexed: 01/12/2023] Open
Abstract
Additive manufacturing (AM) or industrial 3D printing uses cutting-edge technologies and materials to produce a variety of complex products. However, the effects of the unintentionally emitted AM (nano)particles (AMPs) on human cells following inhalation, require further investigations. The physicochemical characterization of the AMPs, extracted from the filter of a Laser Powder Bed Fusion (L-PBF) 3D printer of iron-based materials, disclosed their complexity, in terms of size, shape, and chemistry. Cell Painting, a high-content screening (HCS) assay, was used to detect the subtle morphological changes elicited by the AMPs at the single cell resolution. The profiling of the cell morphological phenotypes, disclosed prominent concentration-dependent effects on the cytoskeleton, mitochondria, and the membranous structures of the cell. Furthermore, lipidomics confirmed that the AMPs induced the extensive membrane remodeling in the lung epithelial and macrophage co-culture cell model. To further elucidate the biological mechanisms of action, the targeted metabolomics unveiled several inflammation-related metabolites regulating the cell response to the AMP exposure. Overall, the AMP exposure led to the internalization, oxidative stress, cytoskeleton disruption, mitochondrial activation, membrane remodeling, and metabolic reprogramming of the lung epithelial cells and macrophages. We propose the approach of integrating Cell Painting with metabolomics and lipidomics, as an advanced nanosafety methodology, increasing the ability to capture the cellular and molecular phenotypes and the relevant biological mechanisms to the (nano)particle exposure.
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Affiliation(s)
- Andi Alijagic
- Man-Technology-Environment Research Center (MTM), Örebro University, SE-701 82 Örebro, Sweden
- Inflammatory Response and Infection Susceptibility Centre (iRiSC), Faculty of Medicine and Health, Örebro University, SE-701 82 Örebro, Sweden
- Faculty of Medicine and Health, School of Medical Sciences, Örebro University, SE-701 82 Örebro, Sweden
| | - Nikolai Scherbak
- Man-Technology-Environment Research Center (MTM), Örebro University, SE-701 82 Örebro, Sweden
| | - Oleksandr Kotlyar
- Man-Technology-Environment Research Center (MTM), Örebro University, SE-701 82 Örebro, Sweden
- Centre for Applied Autonomous Sensor Systems (AASS), Mobile Robotics and Olfaction Lab (MRO), Örebro University, SE-701 82 Örebro, Sweden
| | - Patrik Karlsson
- Department of Mechanical Engineering, Örebro University, SE-701 82 Örebro, Sweden
| | - Xuying Wang
- KTH Royal Institute of Technology, Department of Chemistry, Division of Surface and Corrosion Science, SE-100 44 Stockholm, Sweden
| | - Inger Odnevall
- KTH Royal Institute of Technology, Department of Chemistry, Division of Surface and Corrosion Science, SE-100 44 Stockholm, Sweden
- AIMES—Center for the Advancement of Integrated Medical and Engineering Sciences at Karolinska Institutet and KTH Royal Institute of Technology, SE-100 44 Stockholm, Sweden
- Department of Neuroscience, Karolinska Institutet, SE-171 77 Stockholm, Sweden
| | - Oldřich Benada
- Institute of Microbiology of the Czech Academy of Sciences, 140 00 Prague, Czech Republic
| | - Ali Amiryousefi
- Faculty of Medicine and Health, School of Medical Sciences, Örebro University, SE-701 82 Örebro, Sweden
| | - Lena Andersson
- Inflammatory Response and Infection Susceptibility Centre (iRiSC), Faculty of Medicine and Health, Örebro University, SE-701 82 Örebro, Sweden
- Faculty of Medicine and Health, School of Medical Sciences, Örebro University, SE-701 82 Örebro, Sweden
- Department of Occupational and Environmental Medicine, Örebro University Hospital, SE-701 85 Örebro, Sweden
| | - Alexander Persson
- Inflammatory Response and Infection Susceptibility Centre (iRiSC), Faculty of Medicine and Health, Örebro University, SE-701 82 Örebro, Sweden
- Faculty of Medicine and Health, School of Medical Sciences, Örebro University, SE-701 82 Örebro, Sweden
| | | | | | - Maria Larsson
- Man-Technology-Environment Research Center (MTM), Örebro University, SE-701 82 Örebro, Sweden
| | - Alexander Hedbrant
- Inflammatory Response and Infection Susceptibility Centre (iRiSC), Faculty of Medicine and Health, Örebro University, SE-701 82 Örebro, Sweden
- Faculty of Medicine and Health, School of Medical Sciences, Örebro University, SE-701 82 Örebro, Sweden
| | - Samira Salihovic
- Man-Technology-Environment Research Center (MTM), Örebro University, SE-701 82 Örebro, Sweden
- Inflammatory Response and Infection Susceptibility Centre (iRiSC), Faculty of Medicine and Health, Örebro University, SE-701 82 Örebro, Sweden
- Faculty of Medicine and Health, School of Medical Sciences, Örebro University, SE-701 82 Örebro, Sweden
| | - Tuulia Hyötyläinen
- Man-Technology-Environment Research Center (MTM), Örebro University, SE-701 82 Örebro, Sweden
| | - Dirk Repsilber
- Faculty of Medicine and Health, School of Medical Sciences, Örebro University, SE-701 82 Örebro, Sweden
| | - Eva Särndahl
- Inflammatory Response and Infection Susceptibility Centre (iRiSC), Faculty of Medicine and Health, Örebro University, SE-701 82 Örebro, Sweden
- Faculty of Medicine and Health, School of Medical Sciences, Örebro University, SE-701 82 Örebro, Sweden
| | - Magnus Engwall
- Man-Technology-Environment Research Center (MTM), Örebro University, SE-701 82 Örebro, Sweden
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15
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Di Ianni E, Jacobsen NR, Vogel U, Møller P. Predicting nanomaterials pulmonary toxicity in animals by cell culture models: Achievements and perspectives. WILEY INTERDISCIPLINARY REVIEWS. NANOMEDICINE AND NANOBIOTECHNOLOGY 2022; 14:e1794. [PMID: 36416018 PMCID: PMC9786239 DOI: 10.1002/wnan.1794] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Revised: 02/10/2022] [Accepted: 03/10/2022] [Indexed: 11/24/2022]
Abstract
Animal experiments are highly relevant models for the assessment of toxicological effects of engineered nanomaterials (ENMs), due to lack of biomonitoring and epidemiological studies. However, the expanding number of ENMs with different physico-chemical properties strains this approach, as there are ethical concerns and economical challenges with the use of animals in toxicology. There is an urgent need for cell culture models that predict the level of toxicological responses in vivo, consequently reducing or replacing the use of animals in nanotoxicology. However, there is still a limited number of studies on in vitro-in vivo correlation of toxicological responses following ENMs exposure. In this review, we collected studies that have compared in vitro and in vivo toxic effects caused by ENMs. We discuss the influence of cell culture models and exposure systems on the predictability of in vitro models to equivalent toxic effects in animal lungs after pulmonary exposure to ENMs. In addition, we discuss approaches to qualitatively or quantitatively compare the effects in vitro and in vivo. The magnitude of toxicological responses in cells that are exposed in submerged condition is not systematically different from the response in cells exposed in air-liquid interface systems, and there appears to be similar ENMs hazard ranking between the two exposure systems. Overall, we show that simple in vitro models with cells exposed to ENMs in submerged condition can be used to predict toxic effects in vivo, and identify future strategies to improve the associations between in vitro and in vivo ENMs-induced pulmonary toxicity. This article is categorized under: Toxicology and Regulatory Issues in Nanomedicine > Toxicology of Nanomaterials.
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Affiliation(s)
- Emilio Di Ianni
- National Research Centre for the Working EnvironmentCopenhagenDenmark
| | | | - Ulla Vogel
- National Research Centre for the Working EnvironmentCopenhagenDenmark
- National Food InstituteTechnical University of DenmarkKongens LyngbyDenmark
| | - Peter Møller
- Department of Public Health, Section of Environmental HealthUniversity of CopenhagenCopenhagenDenmark
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16
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Martin S, de Haan L, Miro Estruch I, Eder KM, Marzi A, Schnekenburger J, Blosi M, Costa A, Antonello G, Bergamaschi E, Riganti C, Beal D, Carrière M, Taché O, Hutchison G, Malone E, Young L, Campagnolo L, La Civita F, Pietroiusti A, Devineau S, Baeza A, Boland S, Zong C, Ichihara G, Fadeel B, Bouwmeester H. Pre-validation of a reporter gene assay for oxidative stress for the rapid screening of nanobiomaterials. FRONTIERS IN TOXICOLOGY 2022; 4:974429. [PMID: 36171865 PMCID: PMC9511406 DOI: 10.3389/ftox.2022.974429] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Accepted: 08/09/2022] [Indexed: 12/04/2022] Open
Abstract
Engineered nanomaterials have been found to induce oxidative stress. Cellular oxidative stress, in turn, can result in the induction of antioxidant and detoxification enzymes which are controlled by the nuclear erythroid 2-related factor 2 (NRF2) transcription factor. Here, we present the results of a pre-validation study which was conducted within the frame of BIORIMA (“biomaterial risk management”) an EU-funded research and innovation project. For this we used an NRF2 specific chemically activated luciferase expression reporter gene assay derived from the human U2OS osteosarcoma cell line to screen for the induction of the NRF2 mediated gene expression following exposure to biomedically relevant nanobiomaterials. Specifically, we investigated Fe3O4-PEG-PLGA nanomaterials while Ag and TiO2 “benchmark” nanomaterials from the Joint Research Center were used as reference materials. The viability of the cells was determined by using the Alamar blue assay. We performed an interlaboratory study involving seven different laboratories to assess the applicability of the NRF2 reporter gene assay for the screening of nanobiomaterials. The latter work was preceded by online tutorials to ensure that the procedures were harmonized across the different participating laboratories. Fe3O4-PEG-PLGA nanomaterials were found to induce very limited NRF2 mediated gene expression, whereas exposure to Ag nanomaterials induced NRF2 mediated gene expression. TiO2 nanomaterials did not induce NRF2 mediated gene expression. The variability in the results obtained by the participating laboratories was small with mean intra-laboratory standard deviation of 0.16 and mean inter laboratory standard deviation of 0.28 across all NRF2 reporter gene assay results. We conclude that the NRF2 reporter gene assay is a suitable assay for the screening of nanobiomaterial-induced oxidative stress responses.
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Affiliation(s)
- Sebastin Martin
- Division of Molecular Toxicology, Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden
| | - Laura de Haan
- Division of Toxicology, Wageningen University and Research, Wageningen, Netherlands
| | - Ignacio Miro Estruch
- Division of Toxicology, Wageningen University and Research, Wageningen, Netherlands
| | - Kai Moritz Eder
- Biomedical Technology Center, Westfälische Wilhelms-University, Münster, Germany
| | - Anne Marzi
- Biomedical Technology Center, Westfälische Wilhelms-University, Münster, Germany
| | | | - Magda Blosi
- Institute of Science and Technology for Ceramics (ISTEC), CNR, Faenza, Italy
| | - Anna Costa
- Institute of Science and Technology for Ceramics (ISTEC), CNR, Faenza, Italy
| | | | - Enrico Bergamaschi
- Department of Public Health and Pediatrics, University of Torino, Torino, Italy
| | - Chiara Riganti
- Department of Chemistry, University of Torino, Torino, Italy
| | - David Beal
- Université Grenoble-Alpes, CEA, CNRS, IRIG, SyMMES, Grenoble, France
| | - Marie Carrière
- Université Grenoble-Alpes, CEA, CNRS, IRIG, SyMMES, Grenoble, France
| | - Olivier Taché
- Université Paris-Saclay, CEA, CNRS, NIMBE, Gif-sur-Yvette, France
| | - Gary Hutchison
- School of Applied Sciences, Edinburgh Napier University, Edinburgh, United Kingdom
| | - Eva Malone
- School of Applied Sciences, Edinburgh Napier University, Edinburgh, United Kingdom
| | - Lesley Young
- School of Applied Sciences, Edinburgh Napier University, Edinburgh, United Kingdom
| | - Luisa Campagnolo
- Université Paris Cité, CNRS, Unité de Biologie Fonctionnelle et Adaptative, F-75013 Paris, France
| | - Fabio La Civita
- Université Paris Cité, CNRS, Unité de Biologie Fonctionnelle et Adaptative, F-75013 Paris, France
| | - Antonio Pietroiusti
- Université Paris Cité, CNRS, Unité de Biologie Fonctionnelle et Adaptative, F-75013 Paris, France
| | - Stéphanie Devineau
- Université Paris Cité, Unité de Biologie Fonctionnelle et Adaptative, Paris, France
| | - Armelle Baeza
- Université Paris Cité, Unité de Biologie Fonctionnelle et Adaptative, Paris, France
| | - Sonja Boland
- Université Paris Cité, Unité de Biologie Fonctionnelle et Adaptative, Paris, France
| | - Cai Zong
- Department of Occupational and Environmental Health, Tokyo University of Science, Tokyo, Japan
| | - Gaku Ichihara
- Department of Occupational and Environmental Health, Tokyo University of Science, Tokyo, Japan
| | - Bengt Fadeel
- Division of Molecular Toxicology, Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden
| | - Hans Bouwmeester
- Division of Toxicology, Wageningen University and Research, Wageningen, Netherlands
- *Correspondence: Hans Bouwmeester,
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Zhang L, Brooks BW, Liu F, Zhou Z, Li H, You J. Human Apparent Volume of Distribution Predicts Bioaccumulation of Ionizable Organic Chemicals in Zebrafish Embryos. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:11547-11558. [PMID: 35896009 DOI: 10.1021/acs.est.2c03421] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Chemicals with elevated bioaccumulation profiles present potential hazards to public health and the environment. Ionizable organic compounds (IOCs) increasingly represent a large proportion of commercial chemicals; however, historical approaches for bioaccumulation determinations are mainly developed for neutral chemicals, which were not appropriate for IOCs. Herein, we employed the zebrafish embryo, a common vertebrate model in environmental and biomedical studies, to elucidate toxicokinetics and bioconcentration of eight IOCs with diverse physicochemical properties and pharmacokinetic parameters. At an environmentally relevant pH (7.5), most IOCs exhibited rapid uptake and depuration in zebrafish, suggesting the ionized forms of IOCs are readily bioavailable. Bioconcentration factors (BCF) of these IOCs ranged from 0.0530 to 250 L·kg-1 wet weight. The human pharmacokinetic proportionality factor, apparent volume of distribution (VD), better predicted the BCF of selected IOCs than more commonly used hydrophobicity-based parameters (e.g., pH-dependent octanol-water distribution ratio, Dow). Predictive bioaccumulation models for IOCs were constructed and validated using VD alone or with Dow. Significant relationships between fish BCF and human VD, which is readily available for pharmaceuticals, highlighted the utility of biologically based "read-across" approaches for predicting bioaccumulative potential of IOCs. Our novel findings thus provided an understanding of the partitioning behavior and improved predictive bioconcentration modeling for IOCs.
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Affiliation(s)
- Ling Zhang
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou, 511443, China
| | - Bryan W Brooks
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou, 511443, China
- Department of Environmental Science, Institute of Biomedical Studies, Center for Reservoir and Aquatic Systems Research, Baylor University, Waco, Texas 76798, United States
| | - Fen Liu
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou, 511443, China
| | - Zhimin Zhou
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou, 511443, China
| | - Huizhen Li
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou, 511443, China
| | - Jing You
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou, 511443, China
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18
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Krans NA, Ammar A, Nymark P, Willighagen EL, Bakker MI, Quik JTK. FAIR assessment tools: evaluating use and performance. NANOIMPACT 2022; 27:100402. [PMID: 35717894 DOI: 10.1016/j.impact.2022.100402] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Revised: 04/15/2022] [Accepted: 04/19/2022] [Indexed: 06/15/2023]
Abstract
Publishing research data using a findable, accessible, interoperable, and reusable (FAIR) approach is paramount to further innovation in many areas of research. In particular in developing innovative approaches to predict (eco)toxicological risks in (nano or advanced) material design where efficient use of existing data is essential. The use of tools assessing the FAIRness of data helps the future improvement of data FAIRness and therefore their re-use. This paper reviews ten FAIR assessment tools that have been evaluated and characterized using two datasets from the nanomaterials and microplastics risk assessment domain. The tools were grouped into four categories: online and offline self-assessment survey based, online (semi-) automated and other tools. We found that the online self-assessment tools can be used for a quick scan of a user's dataset due to their ease of use, little need for experience and short time investment. When a user is looking to assess full databases, and not just datasets, for their FAIRness, (semi-)automated tools are more practical. The offline assessment tools were found to be limited and unreliable due to a lack of guidance and an under-developed state. To further characterize the usability, two datasets were run through all tools to check the similarity in the tools' results. As most of the tools differ in their implementation of the FAIR principles, a large variety in outcomes was obtained. Furthermore, it was observed that only one tool gives recommendations to the user on how to improve the FAIRness of the evaluated dataset. This paper gives clear recommendations for both the user and the developer of FAIR assessment tools.
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Affiliation(s)
- N A Krans
- National Institute for Public Health and the Environment (RIVM), Centre for Safety of Substances and Products, Bilthoven, the Netherlands
| | - A Ammar
- Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands.
| | - P Nymark
- Institute of Environmental Medicine, Karolinska Institute, 171 77 Stockholm, Sweden
| | - E L Willighagen
- Department of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Maastricht, the Netherlands
| | - M I Bakker
- National Institute for Public Health and the Environment (RIVM), Centre for Safety of Substances and Products, Bilthoven, the Netherlands
| | - J T K Quik
- National Institute for Public Health and the Environment (RIVM), Centre for Sustainability, Environment and Health, Bilthoven, the Netherlands
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19
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Chatterjee M, Roy K. Application of cross-validation strategies to avoid overestimation of performance of 2D-QSAR models for the prediction of aquatic toxicity of chemical mixtures. SAR AND QSAR IN ENVIRONMENTAL RESEARCH 2022; 33:463-484. [PMID: 35638563 DOI: 10.1080/1062936x.2022.2081255] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Accepted: 05/19/2022] [Indexed: 06/15/2023]
Abstract
The quantitative structure-activity relationship (QSAR) modelling of mixtures is not as simple as that for individual chemicals, and it needs additional care to avoid overestimation of the performance. In this research, we have developed a 2D-QSAR model using only 2D interpretable and reproducible descriptors to predict the aquatic toxicity of mixtures of polar and non-polar narcotic substances present in the environment. Partial least squares (PLS) regression has been used to model the response variable (log 1/EC50 against Photobacterium phosphoreum) and the structural features of 84 binary mixtures of polar and nonpolar narcotic toxicants complying with the Organization of Economic Co-operation and Development (OECD) protocols. The model was cross-validated by mixtures-out and compounds-out cross-validation to nullify the developmental bias. The reliability of prediction of the model has been judged by the Prediction Reliability Indicator (PRI) tool using a newly designed set. The new model is robust, reproducible, extremely predictive, easily interpretable, and can be used for reliable prediction of aquatic toxicity of any untested chemical mixtures within the applicability domain. We have additionally used a machine learning-based chemical read-across algorithm in this study to improve the quality of predictions for the toxicity of the mixtures with the modelled descriptors.
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Affiliation(s)
- M Chatterjee
- Drug Theoretics and Cheminformatics Laboratory, Department of Pharmaceutical Technology, Jadavpur University, Kolkata, India
| | - K Roy
- Drug Theoretics and Cheminformatics Laboratory, Department of Pharmaceutical Technology, Jadavpur University, Kolkata, India
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20
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Forest V. Experimental and Computational Nanotoxicology-Complementary Approaches for Nanomaterial Hazard Assessment. NANOMATERIALS 2022; 12:nano12081346. [PMID: 35458054 PMCID: PMC9031966 DOI: 10.3390/nano12081346] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Revised: 04/07/2022] [Accepted: 04/12/2022] [Indexed: 12/25/2022]
Abstract
The growing development and applications of nanomaterials lead to an increasing release of these materials in the environment. The adverse effects they may elicit on ecosystems or human health are not always fully characterized. Such potential toxicity must be carefully assessed with the underlying mechanisms elucidated. To that purpose, different approaches can be used. First, experimental toxicology consisting of conducting in vitro or in vivo experiments (including clinical studies) can be used to evaluate the nanomaterial hazard. It can rely on variable models (more or less complex), allowing the investigation of different biological endpoints. The respective advantages and limitations of in vitro and in vivo models are discussed as well as some issues associated with experimental nanotoxicology. Perspectives of future developments in the field are also proposed. Second, computational nanotoxicology, i.e., in silico approaches, can be used to predict nanomaterial toxicity. In this context, we describe the general principles, advantages, and limitations especially of quantitative structure–activity relationship (QSAR) models and grouping/read-across approaches. The aim of this review is to provide an overview of these different approaches based on examples and highlight their complementarity.
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Affiliation(s)
- Valérie Forest
- Mines Saint-Etienne, Univ Lyon, Univ Jean Monnet, Etablissement Français du Sang, INSERM, U1059 Sainbiose, Centre CIS, F-42023 Saint-Etienne, France
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21
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Elberskirch L, Sofranko A, Liebing J, Riefler N, Binder K, Bonatto Minella C, Razum M, Mädler L, Unfried K, Schins RPF, Kraegeloh A, van Thriel C. How Structured Metadata Acquisition Contributes to the Reproducibility of Nanosafety Studies: Evaluation by a Round-Robin Test. NANOMATERIALS 2022; 12:nano12071053. [PMID: 35407172 PMCID: PMC9000531 DOI: 10.3390/nano12071053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Revised: 03/14/2022] [Accepted: 03/16/2022] [Indexed: 11/19/2022]
Abstract
It has been widely recognized that nanosafety studies are limited in reproducibility, caused by missing or inadequate information and data gaps. Reliable and comprehensive studies should be performed supported by standards or guidelines, which need to be harmonized and usable for the multidisciplinary field of nanosafety research. The previously described minimal information table (MIT), based on existing standards or guidelines, represents one approach towards harmonization. Here, we demonstrate the applicability and advantages of the MIT by a round-robin test. Its modular structure enables describing individual studies comprehensively by a combination of various relevant aspects. Three laboratories conducted a WST-1 cell viability assay using A549 cells to analyze the effects of the reference nanomaterials NM101 and NM110 according to predefined (S)OPs. The MIT contains relevant and defined descriptive information and quality criteria and thus supported the implementation of the round-robin test from planning, investigation to analysis and data interpretation. As a result, we could identify sources of variability and justify deviating results attributed to differences in specific procedures. Consequently, the use of the MIT contributes to the acquisition of reliable and comprehensive datasets and therefore improves the significance and reusability of nanosafety studies.
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Affiliation(s)
- Linda Elberskirch
- INM—Leibniz Institute for New Materials, Campus D2 2, 66123 Saarbrücken, Germany;
| | - Adriana Sofranko
- IUF—Leibniz Research Institute for Environmental Medicine, Auf’m Hennekamp 50, 40225 Düsseldorf, Germany; (A.S.); (K.U.); (R.P.F.S.)
| | - Julia Liebing
- IfADo—Leibniz Research Centre for Working Environment and Human Factors, Ardeystraße 67, 44139 Dortmund, Germany;
| | - Norbert Riefler
- IWT—Leibniz-Institut für Werkstofforientierte Technologien, Badgasteiner Str. 3, 28359 Bremen, Germany; (N.R.); (L.M.)
| | - Kunigunde Binder
- FIZ Karlsruhe—Leibniz Institute for Information Infrastructure, Hermann-von-Helmholtz-Platz 1, 76133 Eggenstein-Leopoldshafen, Germany; (K.B.); (C.B.M.); (M.R.)
| | - Christian Bonatto Minella
- FIZ Karlsruhe—Leibniz Institute for Information Infrastructure, Hermann-von-Helmholtz-Platz 1, 76133 Eggenstein-Leopoldshafen, Germany; (K.B.); (C.B.M.); (M.R.)
| | - Matthias Razum
- FIZ Karlsruhe—Leibniz Institute for Information Infrastructure, Hermann-von-Helmholtz-Platz 1, 76133 Eggenstein-Leopoldshafen, Germany; (K.B.); (C.B.M.); (M.R.)
| | - Lutz Mädler
- IWT—Leibniz-Institut für Werkstofforientierte Technologien, Badgasteiner Str. 3, 28359 Bremen, Germany; (N.R.); (L.M.)
| | - Klaus Unfried
- IUF—Leibniz Research Institute for Environmental Medicine, Auf’m Hennekamp 50, 40225 Düsseldorf, Germany; (A.S.); (K.U.); (R.P.F.S.)
| | - Roel P. F. Schins
- IUF—Leibniz Research Institute for Environmental Medicine, Auf’m Hennekamp 50, 40225 Düsseldorf, Germany; (A.S.); (K.U.); (R.P.F.S.)
| | - Annette Kraegeloh
- INM—Leibniz Institute for New Materials, Campus D2 2, 66123 Saarbrücken, Germany;
- Correspondence: (A.K.); (C.v.T.)
| | - Christoph van Thriel
- IfADo—Leibniz Research Centre for Working Environment and Human Factors, Ardeystraße 67, 44139 Dortmund, Germany;
- Correspondence: (A.K.); (C.v.T.)
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22
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Serra A, Saarimäki LA, Pavel A, del Giudice G, Fratello M, Cattelani L, Federico A, Laurino O, Marwah VS, Fortino V, Scala G, Sofia Kinaret PA, Greco D. Nextcast: A software suite to analyse and model toxicogenomics data. Comput Struct Biotechnol J 2022; 20:1413-1426. [PMID: 35386103 PMCID: PMC8956870 DOI: 10.1016/j.csbj.2022.03.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Revised: 03/16/2022] [Accepted: 03/16/2022] [Indexed: 11/28/2022] Open
Abstract
The recent advancements in toxicogenomics have led to the availability of large omics data sets, representing the starting point for studying the exposure mechanism of action and identifying candidate biomarkers for toxicity prediction. The current lack of standard methods in data generation and analysis hampers the full exploitation of toxicogenomics-based evidence in regulatory risk assessment. Moreover, the pipelines for the preprocessing and downstream analyses of toxicogenomic data sets can be quite challenging to implement. During the years, we have developed a number of software packages to address specific questions related to multiple steps of toxicogenomics data analysis and modelling. In this review we present the Nextcast software collection and discuss how its individual tools can be combined into efficient pipelines to answer specific biological questions. Nextcast components are of great support to the scientific community for analysing and interpreting large data sets for the toxicity evaluation of compounds in an unbiased, straightforward, and reliable manner. The Nextcast software suite is available at: ( https://github.com/fhaive/nextcast).
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Affiliation(s)
- Angela Serra
- Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland
- BioMediTech Institute, Tampere University, Tampere University, Tampere, Finland
- Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Tampere, Finland
| | - Laura Aliisa Saarimäki
- Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland
- BioMediTech Institute, Tampere University, Tampere University, Tampere, Finland
- Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Tampere, Finland
| | - Alisa Pavel
- Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland
- BioMediTech Institute, Tampere University, Tampere University, Tampere, Finland
- Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Tampere, Finland
| | - Giusy del Giudice
- Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland
- BioMediTech Institute, Tampere University, Tampere University, Tampere, Finland
- Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Tampere, Finland
| | - Michele Fratello
- Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland
- BioMediTech Institute, Tampere University, Tampere University, Tampere, Finland
- Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Tampere, Finland
| | - Luca Cattelani
- Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland
- BioMediTech Institute, Tampere University, Tampere University, Tampere, Finland
- Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Tampere, Finland
| | - Antonio Federico
- Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland
- BioMediTech Institute, Tampere University, Tampere University, Tampere, Finland
- Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Tampere, Finland
| | | | - Veer Singh Marwah
- Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland
- BioMediTech Institute, Tampere University, Tampere University, Tampere, Finland
| | - Vittorio Fortino
- Institute of Biomedicine, University of Eastern Finland, Kuopio, Finland
| | - Giovanni Scala
- Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland
- BioMediTech Institute, Tampere University, Tampere University, Tampere, Finland
- Department of Biology, University of Naples Federico II, Naples, Italy
| | - Pia Anneli Sofia Kinaret
- Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland
- BioMediTech Institute, Tampere University, Tampere University, Tampere, Finland
- Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Tampere, Finland
- Institute of Biotechnology, University of Helsinki, Helsinki, Finland
| | - Dario Greco
- Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland
- BioMediTech Institute, Tampere University, Tampere University, Tampere, Finland
- Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Tampere, Finland
- Institute of Biotechnology, University of Helsinki, Helsinki, Finland
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23
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Koivisto AJ, Del Secco B, Trabucco S, Nicosia A, Ravegnani F, Altin M, Cabellos J, Furxhi I, Blosi M, Costa A, Lopez de Ipiña J, Belosi F. Quantifying Emission Factors and Setting Conditions of Use According to ECHA Chapter R.14 for a Spray Process Designed for Nanocoatings-A Case Study. NANOMATERIALS (BASEL, SWITZERLAND) 2022; 12:596. [PMID: 35214925 PMCID: PMC8876979 DOI: 10.3390/nano12040596] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Revised: 02/01/2022] [Accepted: 02/08/2022] [Indexed: 12/10/2022]
Abstract
Spray coatings' emissions impact to the environmental and occupational exposure were studied in a pilot-plant. Concentrations were measured inside the spray chamber and at the work room in Near-Field (NF) and Far-Field (FF) and mass flows were analyzed using a mechanistic model. The coating was performed in a ventilated chamber by spraying titanium dioxide doped with nitrogen (TiO2N) and silver capped by hydroxyethylcellulose (Ag-HEC) nanoparticles (NPs). Process emission rates to workplace, air, and outdoor air were characterized according to process parameters, which were used to assess emission factors. Full-scale production exposure potential was estimated under reasonable worst-case (RWC) conditions. The measured TiO2-N and Ag-HEC concentrations were 40.9 TiO2-μg/m3 and 0.4 Ag-μg/m3 at NF (total fraction). Under simulated RWC conditions with precautionary emission rate estimates, the worker's 95th percentile 8-h exposure was ≤171 TiO2 and ≤1.9 Ag-μg/m3 (total fraction). Environmental emissions via local ventilation (LEV) exhaust were ca. 35 and 140 mg-NP/g-NP, for TiO2-N and Ag-HEC, respectively. Under current situation, the exposure was adequately controlled. However, under full scale production with continuous process workers exposure should be evaluated with personal sampling if recommended occupational exposure levels for nanosized TiO2 and Ag are followed for risk management.
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Affiliation(s)
- Antti Joonas Koivisto
- Air Pollution Management APM, Mattilanmäki 38, 33610 Tampere, Finland
- Institute for Atmospheric and Earth System Research (INAR), University of Helsinki, PL 64, FI-00014 Helsinki, Finland
- ARCHE Consulting, Liefkensstraat 35D, B-9032 Wondelgem, Belgium
| | - Benedetta Del Secco
- CNR-ISAC, Institute of Atmospheric Sciences and Climate, National Research Council of Italy, Via Gobetti, 101, 40129 Bologna, Italy; (B.D.S.); (S.T.); (A.N.); (F.R.); (F.B.)
| | - Sara Trabucco
- CNR-ISAC, Institute of Atmospheric Sciences and Climate, National Research Council of Italy, Via Gobetti, 101, 40129 Bologna, Italy; (B.D.S.); (S.T.); (A.N.); (F.R.); (F.B.)
| | - Alessia Nicosia
- CNR-ISAC, Institute of Atmospheric Sciences and Climate, National Research Council of Italy, Via Gobetti, 101, 40129 Bologna, Italy; (B.D.S.); (S.T.); (A.N.); (F.R.); (F.B.)
| | - Fabrizio Ravegnani
- CNR-ISAC, Institute of Atmospheric Sciences and Climate, National Research Council of Italy, Via Gobetti, 101, 40129 Bologna, Italy; (B.D.S.); (S.T.); (A.N.); (F.R.); (F.B.)
| | - Marko Altin
- Witek srl, Via Siena 47, 50142 Firenze, Italy;
| | - Joan Cabellos
- Leitat Technological Center, c/de la Innovació 2, Terrassa, 08225 Barcelona, Spain;
| | - Irini Furxhi
- Transgero Limited, Cullinagh, Newcastle West, Co. Limerick, V42 V384 Limerick, Ireland;
- Department of Accounting and Finance, Kemmy Business School, University of Limerick, V94 T9PX Limerick, Ireland
| | - Magda Blosi
- ISTEC-CNR, Institute of Science and Technology for Ceramics, CNR, National Research Council, Via Granarolo 64, 48018 Faenza, Italy; (M.B.); (A.C.)
| | - Anna Costa
- ISTEC-CNR, Institute of Science and Technology for Ceramics, CNR, National Research Council, Via Granarolo 64, 48018 Faenza, Italy; (M.B.); (A.C.)
| | - Jesús Lopez de Ipiña
- Basque Research and Technology Alliance (BRTA), Consiglio Nazionale delle Ricerche, Parque Tecnológico de Alava, Leonardo Da Vinci 11, 01510 Miñano, Spain;
| | - Franco Belosi
- CNR-ISAC, Institute of Atmospheric Sciences and Climate, National Research Council of Italy, Via Gobetti, 101, 40129 Bologna, Italy; (B.D.S.); (S.T.); (A.N.); (F.R.); (F.B.)
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24
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Krug HF. Collection of Controlled Nanosafety Data-The CoCoN-Database, a Tool to Assess Nanomaterial Hazard. NANOMATERIALS (BASEL, SWITZERLAND) 2022; 12:441. [PMID: 35159786 PMCID: PMC8839907 DOI: 10.3390/nano12030441] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Revised: 01/22/2022] [Accepted: 01/24/2022] [Indexed: 12/23/2022]
Abstract
Hazard assessment is the first step in nanomaterial risk assessment. The overall number of studies on the biological effects of nanomaterials or innovative materials is steadily increasing and is above 40,000. Several databases have been established to make the amount of data manageable, but these are often highly specialized or can be used only by experts. This paper describes a new database which uses an already existing data collection of about 35,000 publications. The collection from the first phase between the years 2000 and 2013 contains about 11,000 articles and this number has been reduced by specific selection criteria. The resulting publications have been evaluated for their quality regarding the toxicological content and the experimental data have been extracted. In addition to material properties, the most important value to be extracted is the no-observed-adverse-effect-level (NOAEL) for in vivo and the no-observed-effect-concentration (NOEC) for in vitro studies. The correlation of the NOAEL/NOEC values with the nanomaterial properties and the investigated endpoints has been tested in projects such as the OECD-AOP project, where the available data for inflammatory responses have been analysed. In addition, special attention was paid to titanium dioxide particles and this example is used to show with searches for in vitro and in vivo experiments on possible lung toxicity what a typical result of a database query can look like. In this review, an emerging database is described that contains valuable information for nanomaterial hazard estimation and should aid in the progress of nanosafety research.
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Affiliation(s)
- Harald F Krug
- NanoCASE GmbH, St. Gallerstr. 58, CH-9032 Engelburg, Switzerland
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25
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Del Secco B, Trabucco S, Ravegnani F, Koivisto AJ, Zanoni I, Blosi M, Ortelli S, Altin M, Bartolini G, Costa AL, Belosi F. Particles Emission from an Industrial Spray Coating Process Using Nano-Materials. NANOMATERIALS 2022; 12:nano12030313. [PMID: 35159658 PMCID: PMC8838285 DOI: 10.3390/nano12030313] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/21/2021] [Revised: 12/16/2021] [Accepted: 01/13/2022] [Indexed: 01/08/2023]
Abstract
Industrial spray coating processes are known to produce excellent coatings on large surfaces and are thus often used for in-line production. However, they could be one of the most critical sources of worker exposure to ultrafine particles (UFPs). A monitoring campaign at the Witek s.r.l. (Florence, Italy) was deployed to characterize the release of TiO2 NPs doped with nitrogen (TiO2-N) and Ag capped with hydroxyethyl cellulose (AgHEC) during automatic industrial spray-coating of polymethyl methacrylate (PMMA) and polyester. Aerosol particles were characterized inside the spray chamber at near field (NF) and far field (FF) locations using on-line and off-line instruments. Results showed that TiO2-N suspension produced higher particle number concentrations than AgHEC in the size range 0.3–1 µm (on average 1.9 102 p/cm3 and 2.5 101 p/cm3, respectively) after background removing. At FF, especially at worst case scenario (4 nozzles, 800 mL/min flow rate) for TiO2-N, the spray spikes were correlated with NF, with an observed time lag of 1 minute corresponding to a diffusion speed of 0.1 m/s. The averaged ratio between particles mass concentrations in the NF position and inside the spray chamber was 1.7% and 1.5% for TiO2-N and for AgHEC suspensions, respectively. The released particles’ number concentration of TiO2-N in the size particles range 0.3–1 µm was comparable for both PMMA and polyester substrates, about 1.5 and 1.6 102 p/cm3. In the size range 0.01–30 µm, the aerosol number concentration at NF for both suspensions was lower than the nano reference values (NRVs) of 16·103 p/cm-3.
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Affiliation(s)
- Benedetta Del Secco
- CNR-ISAC, Institute of Atmospheric Sciences and Climate-National Research Council of Italy, Via Gobetti, 101, 40129 Bologna, Italy; (S.T.); (F.R.); (F.B.)
- Correspondence:
| | - Sara Trabucco
- CNR-ISAC, Institute of Atmospheric Sciences and Climate-National Research Council of Italy, Via Gobetti, 101, 40129 Bologna, Italy; (S.T.); (F.R.); (F.B.)
| | - Fabrizio Ravegnani
- CNR-ISAC, Institute of Atmospheric Sciences and Climate-National Research Council of Italy, Via Gobetti, 101, 40129 Bologna, Italy; (S.T.); (F.R.); (F.B.)
| | | | - Ilaria Zanoni
- CNR-ISTEC, Institute of Science and Technology for Ceramics-National Research Council of Italy, Via Granarolo 64, 48018 Faenza, Italy; (I.Z.); (M.B.); (S.O.); (A.L.C.)
| | - Magda Blosi
- CNR-ISTEC, Institute of Science and Technology for Ceramics-National Research Council of Italy, Via Granarolo 64, 48018 Faenza, Italy; (I.Z.); (M.B.); (S.O.); (A.L.C.)
| | - Simona Ortelli
- CNR-ISTEC, Institute of Science and Technology for Ceramics-National Research Council of Italy, Via Granarolo 64, 48018 Faenza, Italy; (I.Z.); (M.B.); (S.O.); (A.L.C.)
| | - Marko Altin
- Witek srl., Via Siena 47, 50142 Firenze, Italy; (M.A.); (G.B.)
| | | | - Anna Luisa Costa
- CNR-ISTEC, Institute of Science and Technology for Ceramics-National Research Council of Italy, Via Granarolo 64, 48018 Faenza, Italy; (I.Z.); (M.B.); (S.O.); (A.L.C.)
| | - Franco Belosi
- CNR-ISAC, Institute of Atmospheric Sciences and Climate-National Research Council of Italy, Via Gobetti, 101, 40129 Bologna, Italy; (S.T.); (F.R.); (F.B.)
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Grafström R, Haase A, Kohonen P, Jeliazkova N, Nymark P. Reply to: Prospects and challenges for FAIR toxicogenomics data. NATURE NANOTECHNOLOGY 2022; 17:19-20. [PMID: 34949776 DOI: 10.1038/s41565-021-01050-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2021] [Accepted: 11/11/2021] [Indexed: 06/14/2023]
Affiliation(s)
- Roland Grafström
- Institute of Environmental Medicine, Karolinska Institute, Stockholm, Sweden
- Division of Toxicology, Misvik Biology, Turku, Finland
| | - Andrea Haase
- German Federal Institute for Risk Assessment, Berlin, Germany
| | - Pekka Kohonen
- Institute of Environmental Medicine, Karolinska Institute, Stockholm, Sweden
- Division of Toxicology, Misvik Biology, Turku, Finland
| | | | - Penny Nymark
- Institute of Environmental Medicine, Karolinska Institute, Stockholm, Sweden.
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27
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Jeliazkova N, Bleeker E, Cross R, Haase A, Janer G, Peijnenburg W, Pink M, Rauscher H, Svendsen C, Tsiliki G, Zabeo A, Hristozov D, Stone V, Wohlleben W. How can we justify grouping of nanoforms for hazard assessment? Concepts and tools to quantify similarity. NANOIMPACT 2022; 25:100366. [PMID: 35559874 DOI: 10.1016/j.impact.2021.100366] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Revised: 10/15/2021] [Accepted: 11/12/2021] [Indexed: 06/15/2023]
Abstract
The risk of each nanoform (NF) of the same substance cannot be assumed to be the same, as they may vary in their physicochemical characteristics, exposure and hazard. However, neither can we justify a need for more animal testing and resources to test every NF individually. To reduce the need to test all NFs, (regulatory) information requirements may be fulfilled by grouping approaches. For such grouping to be acceptable, it is important to demonstrate similarities in physicochemical properties, toxicokinetic behaviour, and (eco)toxicological behaviour. The GRACIOUS Framework supports the grouping of NFs, by identifying suitable grouping hypotheses that describe the key similarities between different NFs. The Framework then supports the user to gather the evidence required to test these hypotheses and to subsequently assess the similarity of the NFs within the proposed group. The evidence needed to support a hypothesis is gathered by an Integrated Approach to Testing and Assessment (IATA), designed as decision trees constructed of decision nodes. Each decision node asks the questions and provides the methods needed to obtain the most relevant information. This White paper outlines existing and novel methods to assess similarity of the data generated for each decision node, either via a pairwise analysis conducted property-by-property, or by assessing multiple decision nodes simultaneously via a multidimensional analysis. For the pairwise comparison conducted property-by-property we included in this White paper: The x-fold, Bayesian and Arsinh-OWA distance algorithms performed comparably in the scoring of similarity between NF pairs. The Euclidean distance was also useful, but only with proper data transformation. The x-fold method does not standardize data, and thus produces skewed histograms, but has the advantage that it can be implemented without programming knowhow. A range of multidimensional evaluations, using for example dendrogram clustering approaches, were also investigated. Multidimensional distance metrics were demonstrated to be difficult to use in a regulatory context, but from a scientific perspective were found to offer unexpected insights into the overall similarity of very different materials. In conclusion, for regulatory purposes, a property-by-property evaluation of the data matrix is recommended to substantiate grouping, while the multidimensional approaches are considered to be tools of discovery rather than regulatory methods.
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Affiliation(s)
| | - Eric Bleeker
- National Institute for Public Health and the Environment (RIVM), Bilthoven, the Netherlands
| | - Richard Cross
- UKRI Centre for Ecology and Hydrology, MacLean Building, Benson Lane, Wallingford OX10 8BB, UK
| | - Andrea Haase
- German Federal Institute for Risk Assessment (BfR), Department of Chemical and Product Safety, Berlin, Germany
| | - Gemma Janer
- LEITAT Technological Center, Barcelona, Spain
| | - Willie Peijnenburg
- National Institute for Public Health and the Environment (RIVM), Bilthoven, the Netherlands; Institute of Environmental Sciences (CML), Leiden University, Leiden, the Netherlands
| | - Mario Pink
- German Federal Institute for Risk Assessment (BfR), Department of Chemical and Product Safety, Berlin, Germany
| | - Hubert Rauscher
- European Commission, Joint Research Centre (JRC), Ispra, Italy
| | - Claus Svendsen
- UKRI Centre for Ecology and Hydrology, MacLean Building, Benson Lane, Wallingford OX10 8BB, UK
| | - Georgia Tsiliki
- Athena-Research and Innovation Center in Information, Communication and Knowledge Technologies, Marousi, Greece
| | | | | | - Vicki Stone
- NanoSafety Research Group, Heriot-Watt University, Riccarton, Edinburgh EH14 4AS, UK
| | - Wendel Wohlleben
- BASF SE, Dept. Material Physics and Dept Experimental Toxicology & Ecology, Ludwigshafen, Germany.
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Lynch I, Nymark P, Doganis P, Gulumian M, Yoon TH, Martinez DST, Afantitis A. Methods, models, mechanisms and metadata: Introducing the Nanotoxicology collection at F1000Research. F1000Res 2021; 10:1196. [PMID: 34853679 PMCID: PMC8613506 DOI: 10.12688/f1000research.75113.1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 11/03/2021] [Indexed: 11/28/2022] Open
Abstract
Nanotoxicology is a relatively new field of research concerning the study and application of nanomaterials to evaluate the potential for harmful effects in parallel with the development of applications. Nanotoxicology as a field spans materials synthesis and characterisation, assessment of fate and behaviour, exposure science, toxicology / ecotoxicology, molecular biology and toxicogenomics, epidemiology, safe and sustainable by design approaches, and chemoinformatics and nanoinformatics, thus requiring scientists to work collaboratively, often outside their core expertise area. This interdisciplinarity can lead to challenges in terms of interpretation and reporting, and calls for a platform for sharing of best-practice in nanotoxicology research. The F1000Research Nanotoxicology collection, introduced via this editorial, will provide a place to share accumulated best practice, via original research reports including no-effects studies, protocols and methods papers, software reports and living systematic reviews, which can be updated as new knowledge emerges or as the domain of applicability of the method, model or software is expanded. This editorial introduces the Nanotoxicology Collection in
F1000Research. The aim of the collection is to provide an open access platform for nanotoxicology researchers, to support an improved culture of
data sharing and documentation of evolving protocols, biological and computational models, software tools and datasets, that can be applied and built upon to develop predictive models and move towards
in silico nanotoxicology and nanoinformatics. Submissions will be assessed for fit to the collection and subjected to the F1000Research open peer review process.
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Affiliation(s)
- Iseult Lynch
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham, B15 2TT, UK
| | - Penny Nymark
- Institute of Environmental Medicine, Karolinska Institutet, Nobels väg 13, Stockholm, 17 177, Sweden
| | - Philip Doganis
- School of Chemical Engineering, National Technical University of Athens, Athens, 10682, Greece
| | - Mary Gulumian
- National Health Laboratory Services, 1 Modderfontein Rd, Sandringham, Johannesburg, 2192, South Africa.,Haematology and Molecular Medicine, University of the Witwatersrand, 1 Jan Smuts Ave, Johannesburg, 2000, South Africa.,Water Research Group, Unit for Environmental Sciences and Management Potchefstroom, North West University, Potchefstroom, South Africa
| | - Tae-Hyun Yoon
- Department of Chemistry, College of Natural Sciences, Hanyang University, Seoul, 04763, South Korea.,Institute of Next Generation Material Design, Hanyang University, Seoul, 04763, South Korea
| | - Diego S T Martinez
- Brazilian Nanotechnology National Laboratory (LNNano), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas,, Sao Paulo, CEP 13083-970, Brazil
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29
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Bossa C, Andreoli C, Bakker M, Barone F, De Angelis I, Jeliazkova N, Nymark P, Battistelli CL. FAIRification of nanosafety data to improve applicability of (Q)SAR approaches: A case study on in vitro Comet assay genotoxicity data. COMPUTATIONAL TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2021; 20:100190. [PMID: 34820591 PMCID: PMC8591730 DOI: 10.1016/j.comtox.2021.100190] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 09/17/2021] [Accepted: 09/20/2021] [Indexed: 12/30/2022]
Abstract
(Quantitative) structure-activity relationship ([Q]SAR) methodologies are widely applied to predict the (eco)toxicological effects of chemicals, and their use is envisaged in different regulatory frameworks for filling data gaps of untested substances. However, their application to the risk assessment of nanomaterials is still limited, also due to the scarcity of large and curated experimental datasets. Despite a great amount of nanosafety data having been produced over the last decade in international collaborative initiatives, their interpretation, integration and reuse has been hampered by several obstacles, such as poorly described (meta)data, non-standard terminology, lack of harmonized reporting formats and criteria. Recently, the FAIR (Findable, Accessible, Interoperable, and Reusable) principles have been established to guide the scientific community in good data management and stewardship. The EU H2020 Gov4Nano project, together with other international projects and initiatives, is addressing the challenge of improving nanosafety data FAIRness, for maximizing their availability, understanding, exchange and ultimately their reuse. These efforts are largely supported by the creation of a common Nanosafety Data Interface, which connects a row of project-specific databases applying the eNanoMapper data model. A wide variety of experimental data relating to characterization and effects of nanomaterials are stored in the database; however, the methods, protocols and parameters driving their generation are not fully mature. This article reports the progress of an ongoing case study in the Gov4nano project on the reuse of in vitro Comet genotoxicity data, focusing on the issues and challenges encountered in their FAIRification through the eNanoMapper data model. The case study is part of an iterative process in which the FAIRification of data supports the understanding of the phenomena underlying their generation and, ultimately, improves their reusability.
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Key Words
- (Q)SAR approaches
- (Q)SAR, (Quantitative) structure-activity relationship
- AOP, Adverse Outcome Pathway
- ECHA, European Chemicals Agency
- FAIR principles
- FAIR, Findable, Accessible, Interoperable, and Reusable
- Fpg, Formamido pyrimidine glycosilase
- Genotoxicity
- IATA, Integrated Approaches to Testing and Assessment
- ISA–Tab, Investigation/Study/Assay Tab-delimited
- JRC, Joint Research Centre
- MIRCA, Minimum Information for Reporting Comet Assay
- NMBP, Horizon 2020 Advisory Group for Nanotechnologies, Advanced Materials, Biotechnology and Advanced Manufacturing and Processing
- NMBP-13-2018 projects, Gov4Nano, NANORIGO and RiskGONE
- NMs, nanomaterials
- Nano-EHS, Nano Environment, Health and Safety
- Nanomaterials
- Nanosafety data
- OECD, Organisation for Economic Co-operation and Development
- OTM, Olive tail moment
- REACH, Registration, Evaluation Authorisation and Restriction of Chemicals
- SCGE, Single Cell Gel Electrophoresis
- SOPs, Standard Operating Procedures
- in vitro Comet assay
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Affiliation(s)
- Cecilia Bossa
- Environment and Health Department, Istituto Superiore di Sanità, Rome, Italy
| | - Cristina Andreoli
- Environment and Health Department, Istituto Superiore di Sanità, Rome, Italy
| | - Martine Bakker
- Centre for Safety of Substances and Products, National Institute of Public Health and the Environment (RIVM), Bilthoven, the Netherlands
| | - Flavia Barone
- Environment and Health Department, Istituto Superiore di Sanità, Rome, Italy
| | - Isabella De Angelis
- Environment and Health Department, Istituto Superiore di Sanità, Rome, Italy
| | | | - Penny Nymark
- Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden
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30
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Jeliazkova N, Apostolova MD, Andreoli C, Barone F, Barrick A, Battistelli C, Bossa C, Botea-Petcu A, Châtel A, De Angelis I, Dusinska M, El Yamani N, Gheorghe D, Giusti A, Gómez-Fernández P, Grafström R, Gromelski M, Jacobsen NR, Jeliazkov V, Jensen KA, Kochev N, Kohonen P, Manier N, Mariussen E, Mech A, Navas JM, Paskaleva V, Precupas A, Puzyn T, Rasmussen K, Ritchie P, Llopis IR, Rundén-Pran E, Sandu R, Shandilya N, Tanasescu S, Haase A, Nymark P. Towards FAIR nanosafety data. NATURE NANOTECHNOLOGY 2021; 16:644-654. [PMID: 34017099 DOI: 10.1038/s41565-021-00911-6] [Citation(s) in RCA: 60] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2020] [Accepted: 03/28/2021] [Indexed: 06/12/2023]
Abstract
Nanotechnology is a key enabling technology with billions of euros in global investment from public funding, which include large collaborative projects that have investigated environmental and health safety aspects of nanomaterials, but the reuse of accumulated data is clearly lagging behind. Here we summarize challenges and provide recommendations for the efficient reuse of nanosafety data, in line with the recently established FAIR (findable, accessible, interoperable and reusable) guiding principles. We describe the FAIR-aligned Nanosafety Data Interface, with an aggregated findability, accessibility and interoperability across physicochemical, bio-nano interaction, human toxicity, omics, ecotoxicological and exposure data. Overall, we illustrate a much-needed path towards standards for the optimized use of existing data, which avoids duplication of efforts, and provides a multitude of options to promote safe and sustainable nanotechnology.
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Affiliation(s)
| | - Margarita D Apostolova
- Medical and Biological Research Laboratory, Roumen Tsanev Institute of Molecular Biology, Bulgarian Academy of Sciences, Sofia, Bulgaria
| | | | | | - Andrew Barrick
- Mer Molécules Santé, Université Catholique de l'Ouest, Angers, France
| | | | | | - Alina Botea-Petcu
- Institute of Physical Chemistry 'Ilie Murgulescu' of the Romanian Academy, Bucharest, Romania
| | - Amélie Châtel
- Mer Molécules Santé, Université Catholique de l'Ouest, Angers, France
| | | | - Maria Dusinska
- Department of Environmental Chemistry, Health Effects Laboratory, Norwegian Institute for Air Research, Kjeller, Norway
| | - Naouale El Yamani
- Department of Environmental Chemistry, Health Effects Laboratory, Norwegian Institute for Air Research, Kjeller, Norway
| | - Daniela Gheorghe
- Institute of Physical Chemistry 'Ilie Murgulescu' of the Romanian Academy, Bucharest, Romania
| | - Anna Giusti
- Department of Chemical and Product Safety, German Federal Institute for Risk Assessment, Berlin, Germany
| | | | - Roland Grafström
- Department of Toxicology, Misvik Biology, Turku, Finland
- Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden
| | - Maciej Gromelski
- Group of Environmental Chemometrics, Faculty of Chemistry, University of Gdansk, Gdańsk, Poland
- QSAR Lab Ltd, Gdańsk, Poland
| | | | | | | | - Nikolay Kochev
- Ideaconsult Ltd, Sofia, Bulgaria
- Faculty of Chemistry, Department of Analytical Chemistry and Computer Chemistry, University of Plovdiv, Plovdiv, Bulgaria
| | - Pekka Kohonen
- Department of Toxicology, Misvik Biology, Turku, Finland
- Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden
| | - Nicolas Manier
- Expertise and Assays in Ecotoxicology Unit, French National Institute for Industrial Environment and Risks, Verneuil-en-Halatte, France
| | - Espen Mariussen
- Department of Environmental Chemistry, Health Effects Laboratory, Norwegian Institute for Air Research, Kjeller, Norway
| | - Agnieszka Mech
- Joint Research Centre, European Commission, Ispra, Italy
| | - José María Navas
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria, Madrid, Spain
| | - Vesselina Paskaleva
- Ideaconsult Ltd, Sofia, Bulgaria
- Faculty of Chemistry, Department of Analytical Chemistry and Computer Chemistry, University of Plovdiv, Plovdiv, Bulgaria
| | - Aurica Precupas
- Institute of Physical Chemistry 'Ilie Murgulescu' of the Romanian Academy, Bucharest, Romania
| | - Tomasz Puzyn
- Group of Environmental Chemometrics, Faculty of Chemistry, University of Gdansk, Gdańsk, Poland
- QSAR Lab Ltd, Gdańsk, Poland
| | | | | | | | - Elise Rundén-Pran
- Department of Environmental Chemistry, Health Effects Laboratory, Norwegian Institute for Air Research, Kjeller, Norway
| | - Romica Sandu
- Institute of Physical Chemistry 'Ilie Murgulescu' of the Romanian Academy, Bucharest, Romania
| | - Neeraj Shandilya
- Netherlands Organisation for Applied Scientific Research (TNO), Utrecht, Netherlands
| | - Speranta Tanasescu
- Institute of Physical Chemistry 'Ilie Murgulescu' of the Romanian Academy, Bucharest, Romania
| | - Andrea Haase
- Department of Chemical and Product Safety, German Federal Institute for Risk Assessment, Berlin, Germany
| | - Penny Nymark
- Department of Toxicology, Misvik Biology, Turku, Finland.
- Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden.
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31
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Da Silva E, Vogel U, Hougaard KS, Pérez-Gil J, Zuo YY, Sørli JB. An adverse outcome pathway for lung surfactant function inhibition leading to decreased lung function. Curr Res Toxicol 2021; 2:225-236. [PMID: 34345865 PMCID: PMC8320609 DOI: 10.1016/j.crtox.2021.05.005] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2021] [Revised: 05/19/2021] [Accepted: 05/25/2021] [Indexed: 12/27/2022] Open
Abstract
Inhaled substances, such as consumer products, chemicals at the workplace, and nanoparticles, can affect the lung function in several ways. In this paper, we explore the adverse outcome pathway (AOP) that starts when inhaled substances that reach the alveoli inhibit the function of the lung surfactant, and leads to decreased lung function. Lung surfactant covers the inner surface of the alveoli, and regulates the surface tension at the air-liquid interface during breathing. The inhibition of the lung surfactant function leads to alveolar collapse because of the resulting high surface tension at the end of expiration. The collapsed alveoli can be re-opened by inspiration, but this re-opening causes shear stress on cells covering the alveoli. This can damage the alveolar-capillary membrane integrity, allowing blood components to enter the alveolar airspace. Blood components, such as albumin, can interact with the lung surfactant and further inhibit its function. The collapse of the alveoli is responsible for a decrease in the surface area available for blood oxygenation, and it reduces the volume of air that can be inhaled and exhaled. These different key events lead to decreased lung function, characterized by clinical signs of respiratory toxicity and reduced blood oxygenation. Here we present the weight of evidence that supports the AOP, and we give an overview of the methods available in vitro and in vivo to measure each key event of the pathway, and how this AOP can potentially be used in screening for inhalation toxicity.
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Key Words
- AO, adverse outcome
- AOP, adverse outcome pathway
- ARDS, acute respiratory distress syndrome
- Adverse outcome pathway
- Alternative method
- EAGMST, Extended Advisory Group on Molecular Screening and Toxicogenomics
- GHS, Globally Harmonized System of Classification and Labelling of Chemicals
- Inhalation
- KE, key event
- Lung surfactant
- MIE, molecular initiating event
- Nanomaterials
- New approach methodology
- OECD, Organisation for Economic Cooperation and Development
- OI, oxygenation index
- PaO2, dissolved oxygen in the plasma
- SaO2, percentage of hemoglobin saturated with oxygen
- Spray products
- TEER, trans epithelial electrical resistance
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Affiliation(s)
- Emilie Da Silva
- National Research Centre for the Working Environment, Copenhagen, Denmark
- DTU Environment, Technical University of Denmark, Kgs. Lyngby, Denmark
| | - Ulla Vogel
- National Research Centre for the Working Environment, Copenhagen, Denmark
- DTU Health Tech, Technical University of Denmark, Kgs. Lyngby, Denmark
| | - Karin S. Hougaard
- National Research Centre for the Working Environment, Copenhagen, Denmark
- Department of Public Health, University of Copenhagen, Denmark
| | - Jesus Pérez-Gil
- Faculty of Biology and Research Institute “12 de Octubre (imas12)”, Complutense University, Madrid, Spain
| | - Yi Y. Zuo
- Department of Mechanical Engineering, University of Hawaii at Manoa, Honolulu, HI, United States
| | - Jorid B. Sørli
- National Research Centre for the Working Environment, Copenhagen, Denmark
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32
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Nymark P, Karlsson HL, Halappanavar S, Vogel U. Adverse Outcome Pathway Development for Assessment of Lung Carcinogenicity by Nanoparticles. FRONTIERS IN TOXICOLOGY 2021; 3:653386. [PMID: 35295099 PMCID: PMC8915843 DOI: 10.3389/ftox.2021.653386] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2021] [Accepted: 03/26/2021] [Indexed: 12/13/2022] Open
Abstract
Lung cancer, one of the most common and deadly forms of cancer, is in some cases associated with exposure to certain types of particles. With the rise of nanotechnology, there is concern that some engineered nanoparticles may be among such particles. In the absence of epidemiological evidence, assessment of nanoparticle carcinogenicity is currently performed on a time-consuming case-by-case basis, relying mainly on animal experiments. Non-animal alternatives exist, including a few validated cell-based methods accepted for regulatory risk assessment of nanoparticles. Furthermore, new approach methodologies (NAMs), focused on carcinogenic mechanisms and capable of handling the increasing numbers of nanoparticles, have been developed. However, such alternative methods are mainly applied as weight-of-evidence linked to generally required animal data, since challenges remain regarding interpretation of the results. These challenges may be more easily overcome by the novel Adverse Outcome Pathway (AOP) framework, which provides a basis for validation and uptake of alternative mechanism-focused methods in risk assessment. Here, we propose an AOP for lung cancer induced by nanosized foreign matter, anchored to a selection of 18 standardized methods and NAMs for in silico- and in vitro-based integrated assessment of lung carcinogenicity. The potential for further refinement of the AOP and its components is discussed in relation to available nanosafety knowledge and data. Overall, this perspective provides a basis for development of AOP-aligned alternative methods-based integrated testing strategies for assessment of nanoparticle-induced lung cancer.
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Affiliation(s)
- Penny Nymark
- Institute of Environmental Medicine, Karolinska Institute, Stockholm, Sweden
| | - Hanna L. Karlsson
- Institute of Environmental Medicine, Karolinska Institute, Stockholm, Sweden
| | - Sabina Halappanavar
- Environmental Health Science and Research Bureau, Health Canada, Ottawa, ON, Canada
| | - Ulla Vogel
- National Research Centre for the Working Environment, Copenhagen, Denmark
- DTU Health Tech, Technical University of Denmark, Kgs. Lyngby, Denmark
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Radnik J, Kersting R, Hagenhoff B, Bennet F, Ciornii D, Nymark P, Grafström R, Hodoroaba VD. Reliable Surface Analysis Data of Nanomaterials in Support of Risk Assessment Based on Minimum Information Requirements. NANOMATERIALS (BASEL, SWITZERLAND) 2021; 11:639. [PMID: 33807515 PMCID: PMC8001671 DOI: 10.3390/nano11030639] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/25/2021] [Revised: 02/16/2021] [Accepted: 03/02/2021] [Indexed: 02/07/2023]
Abstract
The minimum information requirements needed to guarantee high-quality surface analysis data of nanomaterials are described with the aim to provide reliable and traceable information about size, shape, elemental composition and surface chemistry for risk assessment approaches. The widespread surface analysis methods electron microscopy (SEM), energy dispersive X-ray spectroscopy (EDS), X-ray photoelectron spectroscopy (XPS) and secondary ion mass spectrometry (SIMS) were considered. The complete analysis sequence from sample preparation, over measurements, to data analysis and data format for reporting and archiving is outlined. All selected methods are used in surface analysis since many years so that many aspects of the analysis (including (meta)data formats) are already standardized. As a practical analysis use case, two coated TiO2 reference nanoparticulate samples, which are available on the Joint Research Centre (JRC) repository, were selected. The added value of the complementary analysis is highlighted based on the minimum information requirements, which are well-defined for the analysis methods selected. The present paper is supposed to serve primarily as a source of understanding of the high standardization level already available for the high-quality data in surface analysis of nanomaterials as reliable input for the nanosafety community.
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Affiliation(s)
- Jörg Radnik
- Bundesanstalt für Materialforschung und-Prüfung (BAM), Division 6.1 Surface Analysis and Interfacial Chemistry, Unter den Eichen 87, 12205 Berlin, Germany; (F.B.); (D.C.); (V.-D.H.)
| | | | - Birgit Hagenhoff
- Tascon GmbH, Mendelstr. 17, 48149 Münster, Germany; (R.K.); (B.H.)
| | - Francesca Bennet
- Bundesanstalt für Materialforschung und-Prüfung (BAM), Division 6.1 Surface Analysis and Interfacial Chemistry, Unter den Eichen 87, 12205 Berlin, Germany; (F.B.); (D.C.); (V.-D.H.)
| | - Dmitri Ciornii
- Bundesanstalt für Materialforschung und-Prüfung (BAM), Division 6.1 Surface Analysis and Interfacial Chemistry, Unter den Eichen 87, 12205 Berlin, Germany; (F.B.); (D.C.); (V.-D.H.)
| | - Penny Nymark
- Department of Toxicology, Misvik Biology, Karjakatu 35, 20520 Turku, Finland; (P.N.); (R.G.)
- Institute of Environmental Medicine, Karolinska Institute, Nobels väg 13, 17177 Stockholm, Sweden
| | - Roland Grafström
- Department of Toxicology, Misvik Biology, Karjakatu 35, 20520 Turku, Finland; (P.N.); (R.G.)
- Institute of Environmental Medicine, Karolinska Institute, Nobels väg 13, 17177 Stockholm, Sweden
| | - Vasile-Dan Hodoroaba
- Bundesanstalt für Materialforschung und-Prüfung (BAM), Division 6.1 Surface Analysis and Interfacial Chemistry, Unter den Eichen 87, 12205 Berlin, Germany; (F.B.); (D.C.); (V.-D.H.)
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Saarimäki LA, Federico A, Lynch I, Papadiamantis AG, Tsoumanis A, Melagraki G, Afantitis A, Serra A, Greco D. Manually curated transcriptomics data collection for toxicogenomic assessment of engineered nanomaterials. Sci Data 2021; 8:49. [PMID: 33558569 PMCID: PMC7870661 DOI: 10.1038/s41597-021-00808-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Accepted: 12/16/2020] [Indexed: 02/07/2023] Open
Abstract
Toxicogenomics (TGx) approaches are increasingly applied to gain insight into the possible toxicity mechanisms of engineered nanomaterials (ENMs). Omics data can be valuable to elucidate the mechanism of action of chemicals and to develop predictive models in toxicology. While vast amounts of transcriptomics data from ENM exposures have already been accumulated, a unified, easily accessible and reusable collection of transcriptomics data for ENMs is currently lacking. In an attempt to improve the FAIRness of already existing transcriptomics data for ENMs, we curated a collection of homogenized transcriptomics data from human, mouse and rat ENM exposures in vitro and in vivo including the physicochemical characteristics of the ENMs used in each study.
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Affiliation(s)
- Laura Aliisa Saarimäki
- Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland
- BioMediTech Institute, Tampere University, Tampere, Finland
| | - Antonio Federico
- Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland
- BioMediTech Institute, Tampere University, Tampere, Finland
| | - Iseult Lynch
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, B15 2TT, Birmingham, United Kingdom
| | - Anastasios G Papadiamantis
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, B15 2TT, Birmingham, United Kingdom
- NovaMechanics Ltd, P.O Box 26014 1666, Nicosia, Cyprus
| | | | | | | | - Angela Serra
- Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland
- BioMediTech Institute, Tampere University, Tampere, Finland
| | - Dario Greco
- Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland.
- BioMediTech Institute, Tampere University, Tampere, Finland.
- Institute of Biotechnology, University of Helsinki, Helsinki, Finland.
- Finnish Centre for Alternative Methods (FICAM), Faculty of Medicine and Heath Technology, Tampere University, Tampere, Finland.
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Janer G, Landsiedel R, Wohlleben W. Rationale and decision rules behind the ECETOC NanoApp to support registration of sets of similar nanoforms within REACH. Nanotoxicology 2020; 15:145-166. [PMID: 33320695 DOI: 10.1080/17435390.2020.1842933] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
New registration requirements for nanomaterials under REACH consider the possibility to form 'sets of similar nanoforms' for a joined human health and environmental hazard, exposure and risk assessment. We developed a tool to create and justify sets of similar nanoforms and to ensure that each of the nanoforms is sufficiently similar to all other nanoforms. The decision logic is following the ECHA guidance in a transparent and evidence-based manner. For each two nanoforms the properties under consideration are compared and corresponding thresholds for maximal differences are proposed. In tier1, similarity is assessed based on intrinsic properties that mostly correspond to those required for nanoform identification under REACH: composition, impurities/additives, size, crystallinity, shape and surface treatment. Moreover, potential differences in the agglomeration/aggregation state resulting from different production processes are considered. If nanoforms were not sufficiently similar based on tier1 criteria, additional data from functional assays are required in tier2. In rare cases, additional short-term in vivo rodent data could be required in a third tier. Data required by tier 2 are triggered by the intrinsic properties in the first tier that did not match the similarity criteria. Most often this will be data on dissolution and surface reactivity followed by in vitro toxicity, dispersion stability, dustiness. Out of several nanoforms given by the user, the tool concludes which nanoforms could be justified to be in the same set and which nanoforms are outside. It defines the boundaries of sets of similar nanoforms and generates a justification for the REACH registration.
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Affiliation(s)
- Gemma Janer
- Leitat Technological Center, Barcelona, Spain
| | - Robert Landsiedel
- Department of Experimental Toxicology and Ecology, BASF SE, Ludwigshafen am Rhein, Germany
| | - Wendel Wohlleben
- Department of Material Physics and Analytics, BASF SE, Ludwigshafen am Rhein, Germany
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Gemini Surfactant as a Template Agent for the Synthesis of More Eco-Friendly Silica Nanocapsules. APPLIED SCIENCES-BASEL 2020. [DOI: 10.3390/app10228085] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Silica mesoporous nanocapsules are a class of “smart” engineered nanomaterials (ENMs) applied in several fields. Recent studies have highlighted that they can exert deleterious effects into marine organisms, attributed to the use of the toxic cationic surfactant N-hexadecyl-N,N,N-trimethylammonium bromide (CTAB) during the synthesis of ENMs. The present study reports the successful synthesis and characterization of novel gemini surfactant-based silica nanocapsules. The gemini surfactant 1,4-bis-[N-(1-dodecyl)-N,N-dimethylammoniummethyl]benzene dibromide (QSB2-12) was chosen as a more environmentally-friendly replacement of CTAB. Nanocapsules were characterized by scanning electron microscopy (SEM), Fourier-transformed infrared spectroscopy (FTIR), dynamic light scattering (DLS), thermogravimetric analysis (TGA) and N2 adsorption-desorption isotherms. Short-term exposure effects of new ENMs were evaluated in four marine species (Nannochloropsis gaditana, Tetraselmis chuii and Phaeodactylum tricornutum) and the microcrustacean (Artemia salina). The replacement of the commercial cationic surfactant by the gemini surfactant does not change the structure nor the environmental behaviour in seawater of the newly synthesised silica nanocontainers. Additionally, it is demonstrated that using gemini surfactants can reduce the toxicity of novel silica nanocapsules towards the tested marine species. As a result, environmentally-friendly ENMs can be obtained based on a safe-by-design approach, thereby fitting the concept of Green Chemistry.
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Xiarchos I, Morozinis AK, Kavouras P, Charitidis CA. Nanocharacterization, Materials Modeling, and Research Integrity as Enablers of Sound Risk Assessment: Designing Responsible Nanotechnology. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2020; 16:e2001590. [PMID: 32656997 DOI: 10.1002/smll.202001590] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Revised: 06/03/2020] [Indexed: 06/11/2023]
Abstract
Nanotechnology, as a mature enabling technology, has great potential to boost societal welfare. However, nanomaterials' current and foreseen applications raise serious concerns about their impact on human health and the environment. These concerns emerge because a reliable risk assessment in nanotechnology is yet to be achieved. The reasons for such a shortcoming are the inherent difficulties in characterizing nanomaterials properties. The interaction of characterization with modeling is an open issue and, due to overarching concerns about the reliability of research results, usually framed within the context of research integrity. This essay explores the connection between these different, but deeply intertwined concerns and the way they enable the production of responsible nanotechnology, i.e., nanotechnology devoted to societal welfare.
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Affiliation(s)
- Ioannis Xiarchos
- Research Lab of Advanced, Composite, Nanomaterials, and Nanotechnology (R-NanoLab), School of Chemical Engineering, National Technical University of Athens, 9 Heroon Polytechniou str., Zographos, Athens, 15780, Greece
| | - Athanasios K Morozinis
- Research Lab of Advanced, Composite, Nanomaterials, and Nanotechnology (R-NanoLab), School of Chemical Engineering, National Technical University of Athens, 9 Heroon Polytechniou str., Zographos, Athens, 15780, Greece
| | - Panagiotis Kavouras
- Research Lab of Advanced, Composite, Nanomaterials, and Nanotechnology (R-NanoLab), School of Chemical Engineering, National Technical University of Athens, 9 Heroon Polytechniou str., Zographos, Athens, 15780, Greece
| | - Costas A Charitidis
- Research Lab of Advanced, Composite, Nanomaterials, and Nanotechnology (R-NanoLab), School of Chemical Engineering, National Technical University of Athens, 9 Heroon Polytechniou str., Zographos, Athens, 15780, Greece
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38
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Dugershaw BB, Aengenheister L, Hansen SSK, Hougaard KS, Buerki-Thurnherr T. Recent insights on indirect mechanisms in developmental toxicity of nanomaterials. Part Fibre Toxicol 2020; 17:31. [PMID: 32653006 PMCID: PMC7353685 DOI: 10.1186/s12989-020-00359-x] [Citation(s) in RCA: 64] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Accepted: 06/14/2020] [Indexed: 12/20/2022] Open
Abstract
BACKGROUND Epidemiological and animal studies provide compelling indications that environmental and engineered nanomaterials (NMs) pose a risk for pregnancy, fetal development and offspring health later in life. Understanding the origin and mechanisms underlying NM-induced developmental toxicity will be a cornerstone in the protection of sensitive populations and the design of safe and sustainable nanotechnology applications. MAIN BODY Direct toxicity originating from NMs crossing the placental barrier is frequently assumed to be the key pathway in developmental toxicity. However, placental transfer of particles is often highly limited, and evidence is growing that NMs can also indirectly interfere with fetal development. Here, we outline current knowledge on potential indirect mechanisms in developmental toxicity of NMs. SHORT CONCLUSION Until now, research on developmental toxicity has mainly focused on the biodistribution and placental translocation of NMs to the fetus to delineate underlying processes. Systematic research addressing NM impact on maternal and placental tissues as potential contributors to mechanistic pathways in developmental toxicity is only slowly gathering momentum. So far, maternal and placental oxidative stress and inflammation, activation of placental toll-like receptors (TLRs), impairment of placental growth and secretion of placental hormones, and vascular factors have been suggested to mediate indirect developmental toxicity of NMs. Therefore, NM effects on maternal and placental tissue function ought to be comprehensively evaluated in addition to placental transfer in the design of future studies of developmental toxicity and risk assessment of NM exposure during pregnancy.
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Affiliation(s)
- Battuja Batbajar Dugershaw
- Laboratory for Particles-Biology Interactions, Empa, Swiss Federal Laboratories for Materials Science and Technology, Empa, Lerchenfeldstrasse 5, 9014, St.Gallen, Switzerland
| | - Leonie Aengenheister
- Laboratory for Particles-Biology Interactions, Empa, Swiss Federal Laboratories for Materials Science and Technology, Empa, Lerchenfeldstrasse 5, 9014, St.Gallen, Switzerland
| | - Signe Schmidt Kjølner Hansen
- National Research Centre for the Working Environment, Copenhagen, Denmark.,Biotech Research and Innovation Centre, University of Copenhagen, Copenhagen, Denmark
| | - Karin Sørig Hougaard
- National Research Centre for the Working Environment, Copenhagen, Denmark.,Department of Public Health, University of Copenhagen, Copenhagen, Denmark
| | - Tina Buerki-Thurnherr
- Laboratory for Particles-Biology Interactions, Empa, Swiss Federal Laboratories for Materials Science and Technology, Empa, Lerchenfeldstrasse 5, 9014, St.Gallen, Switzerland.
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Serra A, Fratello M, Cattelani L, Liampa I, Melagraki G, Kohonen P, Nymark P, Federico A, Kinaret PAS, Jagiello K, Ha MK, Choi JS, Sanabria N, Gulumian M, Puzyn T, Yoon TH, Sarimveis H, Grafström R, Afantitis A, Greco D. Transcriptomics in Toxicogenomics, Part III: Data Modelling for Risk Assessment. NANOMATERIALS (BASEL, SWITZERLAND) 2020; 10:E708. [PMID: 32276469 PMCID: PMC7221955 DOI: 10.3390/nano10040708] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Revised: 03/25/2020] [Accepted: 03/26/2020] [Indexed: 12/30/2022]
Abstract
Transcriptomics data are relevant to address a number of challenges in Toxicogenomics (TGx). After careful planning of exposure conditions and data preprocessing, the TGx data can be used in predictive toxicology, where more advanced modelling techniques are applied. The large volume of molecular profiles produced by omics-based technologies allows the development and application of artificial intelligence (AI) methods in TGx. Indeed, the publicly available omics datasets are constantly increasing together with a plethora of different methods that are made available to facilitate their analysis, interpretation and the generation of accurate and stable predictive models. In this review, we present the state-of-the-art of data modelling applied to transcriptomics data in TGx. We show how the benchmark dose (BMD) analysis can be applied to TGx data. We review read across and adverse outcome pathways (AOP) modelling methodologies. We discuss how network-based approaches can be successfully employed to clarify the mechanism of action (MOA) or specific biomarkers of exposure. We also describe the main AI methodologies applied to TGx data to create predictive classification and regression models and we address current challenges. Finally, we present a short description of deep learning (DL) and data integration methodologies applied in these contexts. Modelling of TGx data represents a valuable tool for more accurate chemical safety assessment. This review is the third part of a three-article series on Transcriptomics in Toxicogenomics.
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Affiliation(s)
- Angela Serra
- Faculty of Medicine and Health Technology, Tampere University, FI-33014 Tampere, Finland; (A.S.); (M.F.); (L.C.); (A.F.); (P.A.S.K.)
- BioMediTech Institute, Tampere University, FI-33014 Tampere, Finland
| | - Michele Fratello
- Faculty of Medicine and Health Technology, Tampere University, FI-33014 Tampere, Finland; (A.S.); (M.F.); (L.C.); (A.F.); (P.A.S.K.)
- BioMediTech Institute, Tampere University, FI-33014 Tampere, Finland
| | - Luca Cattelani
- Faculty of Medicine and Health Technology, Tampere University, FI-33014 Tampere, Finland; (A.S.); (M.F.); (L.C.); (A.F.); (P.A.S.K.)
- BioMediTech Institute, Tampere University, FI-33014 Tampere, Finland
| | - Irene Liampa
- School of Chemical Engineering, National Technical University of Athens, 157 80 Athens, Greece; (I.L.); (H.S.)
| | - Georgia Melagraki
- Nanoinformatics Department, NovaMechanics Ltd., Nicosia 1065, Cyprus; (G.M.); (A.A.)
| | - Pekka Kohonen
- Institute of Environmental Medicine, Karolinska Institutet, 171 77 Stockholm, Sweden; (P.K.); (P.N.); (R.G.)
- Division of Toxicology, Misvik Biology, 20520 Turku, Finland
| | - Penny Nymark
- Institute of Environmental Medicine, Karolinska Institutet, 171 77 Stockholm, Sweden; (P.K.); (P.N.); (R.G.)
- Division of Toxicology, Misvik Biology, 20520 Turku, Finland
| | - Antonio Federico
- Faculty of Medicine and Health Technology, Tampere University, FI-33014 Tampere, Finland; (A.S.); (M.F.); (L.C.); (A.F.); (P.A.S.K.)
- BioMediTech Institute, Tampere University, FI-33014 Tampere, Finland
| | - Pia Anneli Sofia Kinaret
- Faculty of Medicine and Health Technology, Tampere University, FI-33014 Tampere, Finland; (A.S.); (M.F.); (L.C.); (A.F.); (P.A.S.K.)
- BioMediTech Institute, Tampere University, FI-33014 Tampere, Finland
- Institute of Biotechnology, University of Helsinki, 00014 Helsinki, Finland
| | - Karolina Jagiello
- QSAR Lab Ltd., Aleja Grunwaldzka 190/102, 80-266 Gdansk, Poland; (K.J.); (T.P.)
- University of Gdansk, Faculty of Chemistry, Wita Stwosza 63, 80-308 Gdansk, Poland
| | - My Kieu Ha
- Center for Next Generation Cytometry, Hanyang University, Seoul 04763, Korea; (M.K.H.); (J.-S.C.); (T.-H.Y.)
- Department of Chemistry, College of Natural Sciences, Hanyang University, Seoul 04763, Korea
- Institute of Next Generation Material Design, Hanyang University, Seoul 04763, Korea
| | - Jang-Sik Choi
- Center for Next Generation Cytometry, Hanyang University, Seoul 04763, Korea; (M.K.H.); (J.-S.C.); (T.-H.Y.)
- Department of Chemistry, College of Natural Sciences, Hanyang University, Seoul 04763, Korea
- Institute of Next Generation Material Design, Hanyang University, Seoul 04763, Korea
| | - Natasha Sanabria
- National Institute for Occupational Health, Johannesburg 30333, South Africa; (N.S.); (M.G.)
| | - Mary Gulumian
- National Institute for Occupational Health, Johannesburg 30333, South Africa; (N.S.); (M.G.)
- Haematology and Molecular Medicine Department, School of Pathology, University of the Witwatersrand, Johannesburg 2050, South Africa
| | - Tomasz Puzyn
- QSAR Lab Ltd., Aleja Grunwaldzka 190/102, 80-266 Gdansk, Poland; (K.J.); (T.P.)
- University of Gdansk, Faculty of Chemistry, Wita Stwosza 63, 80-308 Gdansk, Poland
| | - Tae-Hyun Yoon
- Center for Next Generation Cytometry, Hanyang University, Seoul 04763, Korea; (M.K.H.); (J.-S.C.); (T.-H.Y.)
- Department of Chemistry, College of Natural Sciences, Hanyang University, Seoul 04763, Korea
- Institute of Next Generation Material Design, Hanyang University, Seoul 04763, Korea
| | - Haralambos Sarimveis
- School of Chemical Engineering, National Technical University of Athens, 157 80 Athens, Greece; (I.L.); (H.S.)
| | - Roland Grafström
- Institute of Environmental Medicine, Karolinska Institutet, 171 77 Stockholm, Sweden; (P.K.); (P.N.); (R.G.)
- Division of Toxicology, Misvik Biology, 20520 Turku, Finland
| | - Antreas Afantitis
- Nanoinformatics Department, NovaMechanics Ltd., Nicosia 1065, Cyprus; (G.M.); (A.A.)
| | - Dario Greco
- Faculty of Medicine and Health Technology, Tampere University, FI-33014 Tampere, Finland; (A.S.); (M.F.); (L.C.); (A.F.); (P.A.S.K.)
- BioMediTech Institute, Tampere University, FI-33014 Tampere, Finland
- Institute of Biotechnology, University of Helsinki, 00014 Helsinki, Finland
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40
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Afantitis A, Melagraki G, Isigonis P, Tsoumanis A, Varsou DD, Valsami-Jones E, Papadiamantis A, Ellis LJA, Sarimveis H, Doganis P, Karatzas P, Tsiros P, Liampa I, Lobaskin V, Greco D, Serra A, Kinaret PAS, Saarimäki LA, Grafström R, Kohonen P, Nymark P, Willighagen E, Puzyn T, Rybinska-Fryca A, Lyubartsev A, Alstrup Jensen K, Brandenburg JG, Lofts S, Svendsen C, Harrison S, Maier D, Tamm K, Jänes J, Sikk L, Dusinska M, Longhin E, Rundén-Pran E, Mariussen E, El Yamani N, Unger W, Radnik J, Tropsha A, Cohen Y, Leszczynski J, Ogilvie Hendren C, Wiesner M, Winkler D, Suzuki N, Yoon TH, Choi JS, Sanabria N, Gulumian M, Lynch I. NanoSolveIT Project: Driving nanoinformatics research to develop innovative and integrated tools for in silico nanosafety assessment. Comput Struct Biotechnol J 2020; 18:583-602. [PMID: 32226594 PMCID: PMC7090366 DOI: 10.1016/j.csbj.2020.02.023] [Citation(s) in RCA: 52] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Revised: 02/18/2020] [Accepted: 02/29/2020] [Indexed: 01/26/2023] Open
Abstract
Nanotechnology has enabled the discovery of a multitude of novel materials exhibiting unique physicochemical (PChem) properties compared to their bulk analogues. These properties have led to a rapidly increasing range of commercial applications; this, however, may come at a cost, if an association to long-term health and environmental risks is discovered or even just perceived. Many nanomaterials (NMs) have not yet had their potential adverse biological effects fully assessed, due to costs and time constraints associated with the experimental assessment, frequently involving animals. Here, the available NM libraries are analyzed for their suitability for integration with novel nanoinformatics approaches and for the development of NM specific Integrated Approaches to Testing and Assessment (IATA) for human and environmental risk assessment, all within the NanoSolveIT cloud-platform. These established and well-characterized NM libraries (e.g. NanoMILE, NanoSolutions, NANoREG, NanoFASE, caLIBRAte, NanoTEST and the Nanomaterial Registry (>2000 NMs)) contain physicochemical characterization data as well as data for several relevant biological endpoints, assessed in part using harmonized Organisation for Economic Co-operation and Development (OECD) methods and test guidelines. Integration of such extensive NM information sources with the latest nanoinformatics methods will allow NanoSolveIT to model the relationships between NM structure (morphology), properties and their adverse effects and to predict the effects of other NMs for which less data is available. The project specifically addresses the needs of regulatory agencies and industry to effectively and rapidly evaluate the exposure, NM hazard and risk from nanomaterials and nano-enabled products, enabling implementation of computational 'safe-by-design' approaches to facilitate NM commercialization.
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Key Words
- (quantitative) Structure–activity relationships
- AI, Artificial Intelligence
- AOPs, Adverse Outcome Pathways
- API, Application Programming interface
- CG, coarse-grained (model)
- CNTs, carbon nanotubes
- Computational toxicology
- Engineered nanomaterials
- FAIR, Findable Accessible Inter-operable and Re-usable
- GUI, Graphical Processing Unit
- HOMO-LUMO, Highest Occupied Molecular Orbital Lowest Unoccupied Molecular Orbital
- Hazard assessment
- IATA, Integrated Approaches to Testing and Assessment
- Integrated approach for testing and assessment
- KE, key events
- MIE, molecular initiating events
- ML, machine learning
- MOA, mechanism (mode) of action
- MWCNT, multi-walled carbon nanotubes
- Machine learning
- NMs, nanomaterials
- Nanoinformatics
- OECD, Organisation for Economic Co-operation and Development
- PBPK, Physiologically Based PharmacoKinetics
- PC, Protein Corona
- PChem, Physicochemical
- PTGS, Predictive Toxicogenomics Space
- Predictive modelling
- QC, quantum-chemical
- QM, quantum-mechanical
- QSAR, quantitative structure-activity relationship
- QSPR, quantitative structure-property relationship
- RA, risk assessment
- REST, Representational State Transfer
- ROS, reactive oxygen species
- Read across
- SAR, structure-activity relationship
- SMILES, Simplified Molecular Input Line Entry System
- SOPs, standard operating procedures
- Safe-by-design
- Toxicogenomics
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Affiliation(s)
| | | | | | | | | | - Eugenia Valsami-Jones
- School of Geography, Earth and Environmental Sciences, University of Birmingham, B15 2TT Birmingham, UK
| | - Anastasios Papadiamantis
- School of Geography, Earth and Environmental Sciences, University of Birmingham, B15 2TT Birmingham, UK
| | - Laura-Jayne A. Ellis
- School of Geography, Earth and Environmental Sciences, University of Birmingham, B15 2TT Birmingham, UK
| | - Haralambos Sarimveis
- School of Chemical Engineering, National Technical University of Athens, 157 80 Athens, Greece
| | - Philip Doganis
- School of Chemical Engineering, National Technical University of Athens, 157 80 Athens, Greece
| | - Pantelis Karatzas
- School of Chemical Engineering, National Technical University of Athens, 157 80 Athens, Greece
| | - Periklis Tsiros
- School of Chemical Engineering, National Technical University of Athens, 157 80 Athens, Greece
| | - Irene Liampa
- School of Chemical Engineering, National Technical University of Athens, 157 80 Athens, Greece
| | - Vladimir Lobaskin
- School of Physics, University College Dublin, Belfield, Dublin 4, Ireland
| | - Dario Greco
- Faculty of Medicine and Health Technology, University of Tampere, FI-33014, Finland
| | - Angela Serra
- Faculty of Medicine and Health Technology, University of Tampere, FI-33014, Finland
| | | | | | - Roland Grafström
- Misvik Biology OY, Itäinen Pitkäkatu 4, 20520 Turku, Finland
- Karolinska Institute, Institute of Environmental Medicine, Nobels väg 13, 17177 Stockholm, Sweden
| | - Pekka Kohonen
- Misvik Biology OY, Itäinen Pitkäkatu 4, 20520 Turku, Finland
- Karolinska Institute, Institute of Environmental Medicine, Nobels väg 13, 17177 Stockholm, Sweden
| | - Penny Nymark
- Misvik Biology OY, Itäinen Pitkäkatu 4, 20520 Turku, Finland
- Karolinska Institute, Institute of Environmental Medicine, Nobels väg 13, 17177 Stockholm, Sweden
| | - Egon Willighagen
- Department of Bioinformatics – BiGCaT, School of Nutrition and Translational Research in Metabolism, Maastricht University, Universiteitssingel 50, 6229 ER Maastricht, the Netherlands
| | - Tomasz Puzyn
- QSAR Lab Ltd., Aleja Grunwaldzka 190/102, 80-266 Gdansk, Poland
- University of Gdansk, Faculty of Chemistry, Wita Stwosza 63, 80-308 Gdansk, Poland
| | | | - Alexander Lyubartsev
- Institutionen för material- och miljökemi, Stockholms Universitet, 106 91 Stockholm, Sweden
| | - Keld Alstrup Jensen
- The National Research Center for the Work Environment, Lersø Parkallé 105, 2100 Copenhagen, Denmark
| | - Jan Gerit Brandenburg
- Interdisciplinary Center for Scientific Computing, Heidelberg University, Germany
- Chief Digital Organization, Merck KGaA, Frankfurter Str. 250, 64293 Darmstadt, Germany
| | - Stephen Lofts
- UK Centre for Ecology and Hydrology, Library Ave, Bailrigg, Lancaster LA1 4AP, UK
| | - Claus Svendsen
- UK Centre for Ecology and Hydrology, MacLean Bldg, Benson Ln, Crowmarsh Gifford, Wallingford OX10 8BB, UK
| | - Samuel Harrison
- UK Centre for Ecology and Hydrology, Library Ave, Bailrigg, Lancaster LA1 4AP, UK
| | - Dieter Maier
- Biomax Informatics AG, Robert-Koch-Str. 2, 82152 Planegg, Germany
| | - Kaido Tamm
- Department of Chemistry, University of Tartu, Ülikooli 18, 50090 Tartu, Estonia
| | - Jaak Jänes
- Department of Chemistry, University of Tartu, Ülikooli 18, 50090 Tartu, Estonia
| | - Lauri Sikk
- Department of Chemistry, University of Tartu, Ülikooli 18, 50090 Tartu, Estonia
| | - Maria Dusinska
- NILU-Norwegian Institute for Air Research, Instituttveien 18, 2002 Kjeller, Norway
| | - Eleonora Longhin
- NILU-Norwegian Institute for Air Research, Instituttveien 18, 2002 Kjeller, Norway
| | - Elise Rundén-Pran
- NILU-Norwegian Institute for Air Research, Instituttveien 18, 2002 Kjeller, Norway
| | - Espen Mariussen
- NILU-Norwegian Institute for Air Research, Instituttveien 18, 2002 Kjeller, Norway
| | - Naouale El Yamani
- NILU-Norwegian Institute for Air Research, Instituttveien 18, 2002 Kjeller, Norway
| | - Wolfgang Unger
- Federal Institute for Material Testing and Research (BAM), Unter den Eichen 44-46, 12203 Berlin, Germany
| | - Jörg Radnik
- Federal Institute for Material Testing and Research (BAM), Unter den Eichen 44-46, 12203 Berlin, Germany
| | - Alexander Tropsha
- Eschelman School of Pharmacy, University of North Carolina at Chapel Hill, 100K Beard Hall, CB# 7568, Chapel Hill, NC 27955-7568, USA
| | - Yoram Cohen
- Samueli School Of Engineering, University of California, Los Angeles, 5531 Boelter Hall, Los Angeles, CA 90095, USA
| | - Jerzy Leszczynski
- Interdisciplinary Nanotoxicity Center, Jackson State University, 1400 J. R. Lynch Street, Jackson, MS 39217, USA
| | - Christine Ogilvie Hendren
- Center for Environmental Implications of Nanotechnologies, Duke University, 121 Hudson Hall, Durham, NC 27708-0287, USA
| | - Mark Wiesner
- Center for Environmental Implications of Nanotechnologies, Duke University, 121 Hudson Hall, Durham, NC 27708-0287, USA
| | - David Winkler
- La Trobe Institute of Molecular Sciences, La Trobe University, Plenty Rd & Kingsbury Dr, Bundoora, VIC 3086, Australia
- Monash Institute of Pharmaceutical Sciences, Monash University, Parkville 3052, Australia
- CSIRO Data61, Clayton 3168, Australia
- School of Pharmacy, University of Nottingham, Nottingham, UK
| | - Noriyuki Suzuki
- National Institute for Environmental Studies, 16-2 Onogawa, Tsukuba, Ibaraki 305-0053, Japan
| | - Tae Hyun Yoon
- Department of Chemistry, College of Natural Sciences, Hanyang University, Seoul 04763, Republic of Korea
- Institute of Next Generation Material Design, Hanyang University, Seoul 04763, Republic of Korea
| | - Jang-Sik Choi
- Institute of Next Generation Material Design, Hanyang University, Seoul 04763, Republic of Korea
| | - Natasha Sanabria
- National Health Laboratory Services, 1 Modderfontein Rd, Sandringham, Johannesburg 2192, South Africa
| | - Mary Gulumian
- National Health Laboratory Services, 1 Modderfontein Rd, Sandringham, Johannesburg 2192, South Africa
- Haematology and Molecular Medicine, University of the Witwatersrand, Johannesburg, South Africa
| | - Iseult Lynch
- School of Geography, Earth and Environmental Sciences, University of Birmingham, B15 2TT Birmingham, UK
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