Biodegradation of melamine and its hydroxy derivatives by a bacterial consortium containing a novel Nocardioides species

Insights into soil microbial assemblages and nitrogen cycling function responses to conventional and biodegradable microplastics

Biodegradable microplastics (MPs) are proposed as sustainable alternatives to conventional MPs, yet their distinct effects on soil microbial communities and ecological functions remain insufficiently understood. This study compares the impacts of biodegradable polylactic acid (PLA) and conventional polyvinyl chloride (PVC) MPs on soil microbial assemblages and nitrogen cycling. Fluorescein diacetate hydrolase (FDAse) activity was temporarily stimulated by 2 % (w/w) PLA and PVC MPs, while 7 % (w/w) PVC MPs initially inhibited FDAse activity before promoting it. PLA MPs (2 % and 7 %, w/w) dramatically reduced bacterial diversity and altered community structure, enriching genera such as Nocardioides, Arthrobacter, Agromyces, Amycolatopsis, Saccharothrix, and Ramlibacter, known for degrading complex compounds. Conversely, PVC MPs (2 % and 7 %, w/w) showed minimal influence on bacterial diversity, with only temporary structural shifts at high concentrations (7 % w/w). Network analysis revealed greater microbial complexity with PLA MPs, where MPs-degrading taxa emerged as keystone species. PLA MPs at both concentrations notably increased the abundance of nitrogenase iron protein subunit H gene (nifH) and nitrogen-fixing bacteria, such as Bradyrhizobium, while also sustaining ammonia monooxygenase subunit A gene (AOB amoA) effects up to day 90. At higher doses (7 % w/w), PLA MPs enriched copper-containing nitrite reductase gene (nirK) and cytochrome cd1 nitrite reductase gene (nirS) abundance, boosting denitrifiers like Cupriavidus, Pseudarthrobacter, and Ensifer. In contrast, PVC MPs showed short-term effects on nitrogen cycling function. These findings have important implications for promoting sustainable agriculture and managing the environmental risks posed by MPs in soil ecosystems.

Comparison of plastisphere microbiomes during the degradation of conventional and biodegradable mulching films

Biodegradable mulch films (BDMs) are becoming increasingly popular in agriculture and are emerging as an alternative to conventional polyethylene (PE) films. However, the intricate details surrounding the establishment and growth of microorganisms on BDMs and PE during their degradation in agricultural fields remain unclear. In this study, the succession of bacterial communities in farmland soil and the plastispheres of PE and BDMs were compared through 16S rRNA gene high-throughput sequencing and real-time PCR. The results unveiled noteworthy distinctions in bacterial community structures across different samples. Specifically, the α-diversity in the BDM plastispheres was markedly lower than in the PE plastisphere. Hydrogenophaga and Variovorax genera were abundantly present in the BDM plastisphere, whereas Mycobacterium demonstrated significant enrichment in the PE plastisphere. Functional annotations indicated high abundances of degradation-related and pathogen-related functions in both BDM and PE plastispheres. Furthermore, the BDM plastisphere exhibited lower network complexity and modularity and stronger competitive interactions than the PE plastisphere. The conducted iCAMP analysis showed that stochastic community assembly processes largely govern the PE plastisphere, while deterministic processes prevailed in BDMs and increased significantly over time. These findings shed light on different mulching materials' effects in farmland ecosystems and provide insights into potential ecological risks linked to their usage.

Melamine - A PMT/vPvM substance as a generic indicator for anthropogenic activity and urbanisation? An explorative study on melamine in the water cycle and soil

Melamine has a high production volume today and is spread ubiquitously in the anthropogenic technosphere. It is released steadily to the water cycle by many sources. Even though melamine has low direct toxicity, chronic exposure can cause nephrolithiasis and disrupt the endocrine system. Most data on melamine is based on case studies with, when compared, partially contradictive implications. As melamine is a compound of many sources (SMS), very persistent, mobile (vPvM), and toxic (PMT) it has the potential to break through natural barriers posing a potential risk to drinking water resources. This study combines existing data with own measurements gathered through various individual monitoring campaigns with the aim to gain new insights into its environmental behaviour and hotspots. Samples from surface water bodies, groundwater, wastewater (treated, untreated), and soil samples were analysed regarding their melamine concentration via liquid chromatography coupled with tandem mass spectrometry (LC-MSMS). Besides three drinking water samples, melamine could be found in all water samples (n = 632) of this study, with a maximum concentration of 1289 ng/L in drinking water and 1120 ng/L in groundwater. While a constant baseline melamine concentration with an event-based release could be observed in most surface water bodies, higher concentrations towards Western Europe (urbanisation and chemical industry) was observed for wastewater. A similar pattern was found in the spatial distribution of melamine in agricultural soils towards an urban/suburban area. As, in general, melamine concentrations were higher towards urbans centers melamine can also be classified as an indicator of anthropogenic activity and urbanisation, but also spotlights on these areas as hotspots for potentially many compounds of the human technosphere. We call policy to shift from the existing one-size-fits-all solution to more flexible and risk-based approaches to prepare for future challenges.

Unraveling the metabolic landscape of Exophiala spinifera strain FM: Model reconstruction, insights into biodesulfurization and beyond

Exophiala spinifera strain FM, a black yeast and melanized ascomycete, shows potential for oil biodesulfurization by utilizing dibenzothiophene (DBT) as its sole sulfur source. However, the specific pathway and enzymes involved in this process remain unclear due to limited genome sequencing and metabolic understanding of E. spinifera. In this study, we sequenced the complete genome of E. spinifera FM to construct the first genome-scale metabolic model (GSMM) for this organism. Through bioinformatics analysis, we identified genes potentially involved in DBT desulfurization and degradation pathways for hazardous pollutants. We focused on understanding the cost associated with metabolites in sulfur assimilation pathway to assess economic feasibility, optimize resource allocation, and guide metabolic engineering and process design. To overcome knowledge gaps, we developed a genome-scale model for E. spinifera, iEsp1694, enabling a comprehensive investigation into its metabolism. The model was rigorously validated against growth phenotypes and gene essentiality data. Through shadow price analysis, we identified costly metabolites such as 3'-phospho-5'-adenylyl sulfate, 5'-adenylyl sulfate, and choline sulfate when DBT was used as the sulfur source. iEsp1694 encompasses the degradation of aromatic compounds, which serves as a crucial first step in comprehending the pan metabolic capabilities of this strain.

Microbiome-based classification models for fresh produce safety and quality evaluation

Small sample sizes and loss of sequencing reads during the microbiome data preprocessing can limit the statistical power of differentiating fresh produce phenotypes and prevent the detection of important bacterial species associated with produce contamination or quality reduction. Here, we explored a machine learning-based k-mer hash analysis strategy to identify DNA signatures predictive of produce safety (PS) and produce quality (PQ) and compared it against the amplicon sequence variant (ASV) strategy that uses a typical denoising step and ASV-based taxonomy strategy. Random forest-based classifiers for PS and PQ using 7-mer hash data sets had significantly higher classification accuracy than those using the ASV data sets. We also demonstrated that the proposed combination of integrating multiple data sets and leveraging a 7-mer hash strategy leads to better classification performance for PS and PQ compared to the ASV method but presents lower PS classification accuracy compared to the feature-selected ASV-based taxonomy strategy. Due to the current limitation of generating taxonomy using the 7-mer hash strategy, the ASV-based taxonomy strategy with remarkably less computing time and memory usage is more efficient for PS and PQ classification and applicable for important taxa identification. Results generated from this study lay the foundation for future studies that wish and need to incorporate and/or compare different microbiome sequencing data sets for the application of machine learning in the area of microbial safety and quality of food.

IMPORTANCE

Identification of generalizable indicators for produce safety (PS) and produce quality (PQ) improves the detection of produce contamination and quality decline. However, effective sequencing read loss during microbiome data preprocessing and the limited sample size of individual studies restrain statistical power to identify important features contributing to differentiating PS and PQ phenotypes. We applied machine learning-based models using individual and integrated k-mer hash and amplicon sequence variant (ASV) data sets for PS and PQ classification and evaluated their classification performance and found that random forest (RF)-based models using integrated 7-mer hash data sets achieved significantly higher PS and PQ classification accuracy. Due to the limitation of taxonomic analysis for the 7-mer hash, we also developed RF-based models using feature-selected ASV-based taxonomic data sets, which performed better PS classification than those using the integrated 7-mer hash data set. The RF feature selection method identified 480 PS indicators and 263 PQ indicators with a positive contribution to the PS and PQ classification.

Nocardioides: "Specialists" for Hard-to-Degrade Pollutants in the Environment

Nocardioides, a genus belonging to Actinomycetes, can endure various low-nutrient conditions. It can degrade pollutants using multiple organic materials such as carbon and nitrogen sources. The characteristics and applications of Nocardioides are described in detail in this review, with emphasis on the degradation of several hard-to-degrade pollutants by using Nocardioides, including aromatic compounds, hydrocarbons, haloalkanes, nitrogen heterocycles, and polymeric polyesters. Nocardioides has unique advantages when it comes to hard-to-degrade pollutants. Compared to other strains, Nocardioides has a significantly higher degradation rate and requires less time to break down substances. This review can be a theoretical basis for developing Nocardioides as a microbial agent with significant commercial and application potential.

Investigation of the Persistence, Toxicological Effects, and Ecological Issues of S-Triazine Herbicides and Their Biodegradation Using Emerging Technologies: A Review

S-triazines are a group of herbicides that are extensively applied to control broadleaf weeds and grasses in agricultural production. They are mainly taken up through plant roots and are transformed by xylem tissues throughout the plant system. They are highly persistent and have a long half-life in the environment. Due to imprudent use, their toxic residues have enormously increased in the last few years and are frequently detected in food commodities, which causes chronic diseases in humans and mammals. However, for the safety of the environment and the diversity of living organisms, the removal of s-triazine herbicides has received widespread attention. In this review, the degradation of s-triazine herbicides and their intermediates by indigenous microbial species, genes, enzymes, plants, and nanoparticles are systematically investigated. The hydrolytic degradation of substituents on the s-triazine ring is catalyzed by enzymes from the amidohydrolase superfamily and yields cyanuric acid as an intermediate. Cyanuric acid is further metabolized into ammonia and carbon dioxide. Microbial-free cells efficiently degrade s-triazine herbicides in laboratory as well as field trials. Additionally, the combinatorial approach of nanomaterials with indigenous microbes has vast potential and considered sustainable for removing toxic residues in the agroecosystem. Due to their smaller size and unique properties, they are equally distributed in sediments, soil, water bodies, and even small crevices. Finally, this paper highlights the implementation of bioinformatics and molecular tools, which provide a myriad of new methods to monitor the biodegradation of s-triazine herbicides and help to identify the diverse number of microbial communities that actively participate in the biodegradation process.

Investigations on melamine-based uric acid kidney stone formation and its prevention by inhibitors

Melamine (Mel) as a milk powder adulterant came to light in September 2008, when a kidney stone disease (KSD) outbreak struck China. The mechanism of the formation of Mel-associated uric acid (UA) stones is relatively unknown. Therefore, in the present study, Mel's influence was explored at comparatively higher and lower concentrations in artificial urine. The parameter optimization performed when the Mel concentration in artificial urine was low, which revealed that higher pH values and lower UA concentration considerably delayed the induction of UA crystallization. When Mel concentration was increased relative to UA concentration, the induction time of UA crystallization decreased dramatically. At the highest concentration of Mel investigated (at UA-Mel molar ratio 1:1), PXRD analysis and SEM revealed a change in crystalline structure of the samples. Based on FTIR analysis, it was determined that UA-Mel interactions are essentially physical, because no new characteristic bands developed. Two inhibitors, namely tri-potassium citrate (TPC) and 3, 7-dimethylxanthine (DMX), were investigated for their inhibitory action on UA crystallization in the presence of Mel. DMX was observed to be more promising than TPC in delaying the induction of crystallisation and hence inhibiting crystal formation.

The plastisphere of biodegradable and conventional microplastics from residues exhibit distinct microbial structure, network and function in plastic-mulching farmland

The inhomogeneity of plastisphere and soil may result in different microbial communities, thus potentially affecting soil functions. Biodegradable plastics offer an alternative to conventional plastics, nevertheless, the inadequate end-of-life treatment of biodegradable plastics may release more microplastics. Herein, we collected PE and PBAT/PLA microplastics in plastic-mulching farmland in Hebei, China. The bacterial communities of soil, PE and PBAT/PLA plastisphere were investigated using 16 S high-throughput sequencing. We found that the structure of bacterial communities in PBAT/PLA plastisphere were significantly distinct from PE plastisphere and soil. The alpha diversities in PBAT/PLA plastisphere were significantly lower than PE plastisphere and soil. Statistical analysis of differentially ASVs suggested that PBAT/PLA microplastics act as a filter, enriching taxa with the capability to degrade plastic polymers such as Proteobacteria and Actinobacteria. Compared to PE plastisphere, PBAT/PLA plastisphere has networks of less complexity, lower modularity, and more competitive interactions. Predicted metabolic pathways involved in human diseases, carbohydrate metabolism, amino acid metabolism, and xenobiotic biodegradation and metabolism were promoted in PBAT/PLA plastisphere, along with the facilitation in abundance of genes associated with carbon and nitrogen cycling. Our results highlighted the uniqueness of plastisphere of biodegradable microplastics from conventional microplastics and their potential impact on soil functions.

A generic avian physiologically-based kinetic (PBK) model and its application in three bird species

Physiologically-based kinetic (PBK) models are effective tools for designing toxicological studies and conducting extrapolations to inform hazard characterization in risk assessment by filling data gaps and defining safe levels of chemicals. In the present work, a generic avian PBK model for male and female birds was developed using PK-Sim and MoBi from the Open Systems Pharmacology Suite (OSPS). The PBK model includes an ovulation model (egg development) to predict concentrations of chemicals in eggs from dietary exposure. The model was parametrized for chicken (Gallus gallus), bobwhite quail (Colinus virginianus) and mallard duck (Anas platyrhynchos) and was tested with nine chemicals for which in vivo studies were available. Time-concentration profiles of chemicals reaching tissues and egg compartment were simulated and compared to in vivo data. The overall accuracy of the PBK model predictions across the analyzed chemicals was good. Model simulations were found to be in the range of 22-79% within a 3-fold and 41-89% were within 10- fold deviation of the in vivo observed data. However, for some compounds scarcity of in-vivo data and inconsistencies between published studies allowed only a limited goodness of fit evaluation. The generic avian PBK model was developed following a "best practice" workflow describing how to build a PBK model for novel species. The credibility and reproducibility of the avian PBK models were scored by evaluation according to the available guidance documents from WHO (2010), and OECD (2021), to increase applicability, confidence and acceptance of these in silico models in chemical risk assessment.

White Rot Fungi Produce Novel Tire Wear Compound Metabolites and Reveal Underappreciated Amino Acid Conjugation Pathways

There is increasing concern about tire wear compounds (TWCs) in surface water and stormwater as evidence grows on their toxicity and widespread detection in the environment. Because TWCs are prevalent in stormwater, there is a need to understand fate and treatment options including biotransformation in green infrastructure (e.g., bioretention). Particularly, fungal biotransformation is not well-studied in a stormwater context despite the known ability of certain fungi to remove recalcitrant contaminants. Here, we report the first study on fungal biotransformation of the TWCs acetanilide and hexamethoxymethylmelamine (HMMM). We found that the model white rot fungus, Trametes versicolor, removed 81.9% and 69.6% of acetanilide and HMMM, respectively, with no significant sorption to biomass. The bicyclic amine 1,3-diphenylguanidine was not removed. Additionally, we identified novel TWC metabolites using semi-untargeted metabolomics via high-resolution mass spectrometry. Key metabolites include multiple isomers of HMMM biotransformation products, melamine as a possible "dead-end" product of HMMM (verified with an authentic standard), and a glutamine-conjugated product of acetanilide. These metabolites have implications for environmental toxicity and treatment. Our discovery of the first fungal glutamine-conjugated product highlights the need to investigate amino acid conjugation as an important pathway in biotransformation of contaminants, with implications in other fields including natural products discovery.

Prolonged lifetime of biological activated carbon filters through enhanced biodegradation of melamine

Micropollutants can be removed in Biological Activated Carbon (BAC) filters through biodegradation, besides adsorption, when the conditions are favorable. In the present study, we build upon previous work on melamine biodegradation and activated carbon regeneration in batch experiments and assess the efficiency of this process in continuous flow lab-scale BAC filters. Melamine is frequently detected at low concentrations in surface water and is used here as a model micropollutant. BAC filters were inoculated with melamine degrading biomass and the contribution of biodegradation to melamine removal was assessed. Furthermore, we tested the effect of an additional carbon source (methanol) and the effect of contact time on melamine removal efficiency. We demonstrate that inoculation of activated carbon filters with melamine degrading biomass increases melamine removal efficiency by at least 25%. When an additional carbon source (methanol) is supplied, melamine removal is almost complete (up to 99%). Finally, through a nitrogen mass balance, we demonstrate that around 60% of the previously adsorbed melamine desorbs from the BAC surface when biodegradation rates in the liquid phase increase. Melamine desorption resulted in a partial recovery of the adsorption capacity.

Melamine degradation to bioregenerate granular activated carbon

The industrial chemical melamine is often detected in surface water used for drinking water production, due to its wide application and insufficient removal in conventional wastewater treatment plants. Melamine can be removed from water by adsorption onto granular activated carbon (GAC), nevertheless, GAC needs periodic reactivation in costly and energy intense processes. As an alternative method, GAC can also be regenerated using biomass capable of degrading melamine in a process called bioregeneration. We assessed melamine biodegradation in batch experiments in fully oxic and anoxic, as well as in alternating oxic and anoxic conditions. Additionally, we studied the effect of an additional carbon source on the biodegradation. The most favourable conditions for melamine biodegradation were applied to bioregenerate GAC loaded with melamine. We demonstrate that melamine can be biodegraded in either oxic or anoxic conditions and that melamine degrading biomass can restore at least 28% of the original GAC adsorption capacity. Furthermore, our results indicate that bioregeneration occurs mainly in the largest pore fraction of GAC, impacting adsorption kinetics. Overall, we show that bioregeneration has a large potential for restoring GAC adsorption capacity in industrial wastewater.

The ameliorative effect of nanoselenium on histopathological and biochemical alterations induced by melamine toxicity on the brain of adult male albino rats

Melamine is a chemical substance used as a food adulterant because of its high nitrogen content; it is known to induce neurotoxicity, thereby adversely affecting the central nervous system. The biocompatibility, bioavailability, lower toxicity, and the large surface area of nanosized selenium relative to its other forms indicate that selenium nanoparticles (SeNPs) have a potential ameliorative effect against melamine-induced neurotoxicity. In this study, we tested this hypothesis using 40 adult male albino rats that were randomly assigned into four groups (n = 10 per group): group I rats served as the untreated negative controls and were fed with standard diet and distilled water; group II rats were orally treated with melamine (300 mg/kg body weight/d); group III rats orally received melamine (300 mg/kg body weight/d) and SeNPs (2 mg/kg body weight/d); and group IV rats received SeNPs only (2 mg/kg body weight/d) for 28 days. Blood and brain samples were collected from all rats and processed for biochemical, histopathological, and immunohistochemical investigations. SeNPs were encapsulated in starch as a natural stabilizer and a size-controlling agent (SeNP@starch). The prepared SeNPs were characterized using different techniques. Inductively coupled plasma-optical emission spectrometry (ICP-OES) indicated that the percentage of selenium loaded in starch was 1.888 %. Powder x-ray diffractometer (XRD) was used to investigate the crystalline structure of the Se-NP@starch, to be tubular and composed of amorphous starch as well as metallic selenium. Thermogravimetric analysis confirmed the thermal stability of the product and determined the interactions among the different components. Transmission electron microscope demonstrated the spherical shape of SeNPs and their dispersion into starch surface as well as evaluating their size in nanoscale (range 20-140 nm). Our results revealed that the melamine- exposed rats had significantly elevated in malondialdehyde levels, significantly reduced in total antioxidant capacity, down-regulated expression of the antioxidant related genes Nrf2 (nuclear factor erythroid 2-related factor 2) and GPx (glutathione peroxidase), as well as up-regulated expression of the apoptosis-related gene Bax (B-cell lymphoma 2-associated X protein), with down regulation of Bcl-2 (B-cell lymphoma 2). Histopathological examination exhibited several alterations in the cerebrum, cerebellum, and hippocampus of the treated rats compared with the controls. Neuronal degeneration, vacuolation of the neuropils, and pericellular and perivascular spaces were observed. In addition, the pyramidal and granular cell layers of the hippocampus and cerebellum, respectively, were found to have significantly reduced thickness. Furthermore, a significant decrease in the percentage area of the glial fibrillary acidic protein and a significant increase in the percentage area of caspase-3 were noted. On the other hand, co-treatment with SeNPs partially ameliorated these alterations. A significant reduction in malondialdehyde levels; a non- significant elevation in total antioxidant capacity; up-regulation, upregulation of Nrf2, GPx, and Bcl-2 and downregulation of Bax were recorded. Neuronal degeneration, vacuolation of neuropils, and pericellular spaces were reduced. The pyramidal and granular cell layers restored their normal thickness. The percentage area of the glial fibrillary acidic protein significantly increased, whereas that of caspase-3 significantly decreased. In conclusion, SeNPs have an ameliorative effect against melamine-induced neurotoxicity in albino rats.

Pathological Impact on the Phyllosphere Microbiota of Artemisia argyi by Haze

The pathological impact of haze upon the phyllosphere microbiota awaits investigation. A moderate degree of haze environment and a clean control were selected in Chengdu, China. Artemisia argyi, a ubiquitously distributed and extensively applied Chinese herb, was also chosen for experiment. Total genome DNA was extracted from leaf samples, and for metagenome sequencing, an Illumina HiSeq 2500 platform was applied. The results showed that the gene numbers of phyllosphere microbiota derived from haze leaves were lower than those of the clean control. The phyllosphere microbiota derived from both haze and clean groups shared the same top ten phyla; the abundances of Proteobacteria, Actinomycetes and Anorthococcuso of the haze group were substantially increased, while Ascomycetes and Basidiomycetes decreased. At the genus level, the abundances of Nocardia, Paracoccus, Marmoricola and Knoelia from haze leaves were markedly increased, while the yeasts were statistically decreased. KEGG retrieval demonstrated that the functional genes were most annotated to metabolism. An interesting find of this work is that the phyllosphere microbiota responsible for the synthesis of primary and secondary metabolites in A. argyi were significantly increased under a haze environment. Relatively enriched genes annotated by eggNOG belong to replication, recombination and repair, and genes classified into the glycoside hydrolase and glycosyltransferase enzymes were significantly increased. In summary, we found that both structure and function of phyllosphere microbiota are globally impacted by haze, while primary and secondary metabolites responsible for haze tolerance were considerably increased. These results suggest an adaptive strategy of plants for tolerating and confronting haze damage.

Microbial Communities of Meat and Meat Products: An Exploratory Analysis of the Product Quality and Safety at Selected Enterprises in South Africa

Consumption of food that is contaminated by microorganisms, chemicals, and toxins may lead to significant morbidity and mortality, which has negative socioeconomic and public health implications. Monitoring and surveillance of microbial diversity along the food value chain is a key component for hazard identification and evaluation of potential pathogen risks from farm to the consumer. The aim of this study was to determine the microbial diversity in meat and meat products from different enterprises and meat types in South Africa. Samples (n = 2017) were analyzed for Yersinia enterocolitica, Salmonella species, Listeria monocytogenes, Campylobacter jejuni, Campylobacter coli, Staphylococcus aureus, Clostridium perfringens, Bacillus cereus, and Clostridium botulinum using culture-based methods. PCR was used for confirmation of selected pathogens. Of the 2017 samples analyzed, microbial ecology was assessed for selected subsamples where next generation sequencing had been conducted, followed by the application of computational methods to reconstruct individual genomes from the respective sample (metagenomics). With the exception of Clostridium botulinum, selective culture-dependent methods revealed that samples were contaminated with at least one of the tested foodborne pathogens. The data from metagenomics analysis revealed the presence of diverse bacteria, viruses, and fungi. The analyses provide evidence of diverse and highly variable microbial communities in products of animal origin, which is important for food safety, food labeling, biosecurity, and shelf life limiting spoilage by microorganisms.

Study on the biodegradation of persistent organic pollutants (POPs)

The use of organochlorine pesticides, such as dichlorodiphenyltrichloroethane (DDT) and benzene hexachloride (BHC), have contributed substantially to the increase and stable supply of food production post-World War II. However, they have also become a major source of pollution on a global scale due to their persistence in the environment, high bioconcentration, toxicity, and their long-distance mobility. Although the use and production of these pesticides were banned over 45 years ago, they still present a risk to human health and ecosystems, and pose a threat to food safety. These pesticides were designated as persistent organic pollutants (POPs) by the Stockholm Convention in 2001, which urged the industry to reduce or eliminate them globally. The authors of this study have been involved in the research and development of bioaugmentation soil remediation technology to reduce the risk of environmental and crop contamination originating from POPs. In this paper, these studies are summarized, from basic studies (1, 2, 3) to an applied study (4), as follows: (1) use of the soil-charcoal perfusion method to explore POP-degrading bacteria, (2) bacteriological characteristics, metabolic pathways and dechlorination genes of the hexaclorobenzene (HCB)-mineralizing bacterial strain PD653, (3) characteristics and metabolic pathways of the dieldrin-degrading bacterial strain KSF27, and (4) application of these degrading bacteria for remediation of POPs-contaminated soil.

Long-term continuously monocropped peanut significantly changed the abundance and composition of soil bacterial communities

Soil sickness is the progressive loss of soil quality due to continuous monocropping. The bacterial populations are critical to sustaining agroecosystems, but their responses to long-term peanut monocropping have not been determined. In this study, based on a previously constructed gradient of continuous monocropped plots, we tracked the detailed feedback responses of soil bacteria to short- and long-term continuous monocropping of four different peanut varieties using high-throughput sequencing techniques. The analyses showed that soil samples from 1- and 2-year monocropped plots were grouped into one class, and samples from the 11- and 12-year plots were grouped into another. Long-term consecutive monocropping could lead to a general loss in bacterial diversity and remarkable changes in bacterial abundance and composition. At the genera level, the dominant genus Bacillus changed in average abundance from 1.49% in short-term monocropping libraries to 2.96% in the long-term libraries. The dominant species Bacillus aryabhattai and Bacillus funiculus and the relatively abundant species Bacillus luciferensis and Bacillus decolorationis all showed increased abundance with long-term monocropping. Additionally, several other taxa at the genus and species level also presented increased abundance with long-term peanut monocropping; however, several taxa showed decreased abundance. Comparing analyses of predicted bacterial community functions showed significant changes at different KEGG pathway levels with long-term peanut monocropping. Combined with our previous study, this study indicated that bacterial communities were obviously influenced by the monocropping period, but less influenced by peanut variety and growth stage. Some bacterial taxa with increased abundance have functions of promoting plant growth or degrading potential soil allelochemicals, and should be closely related with soil remediation and may have potential application to relieve peanut soil sickness. A decrease in diversity and abundance of bacterial communities, especially beneficial communities, and simplification of bacterial community function with long-term peanut monocropping could be the main cause of peanut soil sickness.

Bacterial catabolism of s-triazine herbicides: biochemistry, evolution and application

The synthetic s-triazines are abundant, nitrogen-rich, heteroaromatic compounds used in a multitude of applications including, herbicides, plastics and polymers, and explosives. Their presence in the environment has led to the evolution of bacterial catabolic pathways in bacteria that allow use of these anthropogenic chemicals as a nitrogen source that supports growth. Herbicidal s-triazines have been used since the mid-twentieth century and are among the most heavily used herbicides in the world, despite being withdrawn from use in some areas due to concern about their safety and environmental impact. Bacterial catabolism of the herbicidal s-triazines has been studied extensively. Pseudomonas sp. strain ADP, which was isolated more than thirty years after the introduction of the s-triazine herbicides, has been the model system for most of these studies; however, several alternative catabolic pathways have also been identified. Over the last five years, considerable detail about the molecular mode of action of the s-triazine catabolic enzymes has been uncovered through acquisition of their atomic structures. These structural studies have also revealed insights into the evolutionary origins of this newly acquired metabolic capability. In addition, s-triazine-catabolizing bacteria and enzymes have been used in a range of applications, including bioremediation of herbicides and cyanuric acid, introducing metabolic resistance to plants, and as a novel selectable marker in fermentation organisms. In this review, we cover the discovery and characterization of bacterial strains, metabolic pathways and enzymes that catabolize the s-triazines. We also consider the evolution of these new enzymes and pathways and discuss the practical applications that have been considered for these bacteria and enzymes. One Sentence Summary: A detailed understanding of bacterial herbicide catabolic enzymes and pathways offer new evolutionary insights and novel applied tools.

Spatial and temporal trends of melamine and its derivatives in sediment from Lake Shihwa, South Korea

Occurrence, spatial distribution, and temporal trends of melamine and its derivatives (ammeline, ammelide, and cyanuric acid) were investigated in surface sediment and two sediment cores collected from Lake Shihwa, South Korea. ∑Melamine (sum of melamine and its three derivatives) was found in all surface sediment samples at concentrations that ranged from 16.6 to 4390 ng/g dry weight (dw), with an average value of 202 ng/g dw. ∑Melamine concentrations exhibited a clear spatial gradient, in decreasing order, as: creeks (mean: 577 ng/g dw) > inshore locations (41.9 ng/g dw) > offshore locations (24.3 ng/g dw). ∑Melamine concentrations were notably high in sediment collected near wastewater treatment plant (WWTP) outfalls. Melamine was the most prevalent compound in sediment collected from creeks (87%) and WWTP outfall locations (48%), whereas cyanuric acid was the dominant compound in sediment from inshore (51%) and offshore (63%) locations. The historical profiles of ∑Melamine in sediment cores corresponded with coastal development and environmental changes in this region. This is the first study to document the occurrence and temporal distribution of melamine in sediment cores, and this information is useful in understanding the fate of these relatively less-studied chemicals in the environment.

Biodegradation and toxicity of melamine at high activated sludge concentrations in a membrane bioreactor

Melamine is recalcitrant and toxic to bacteria in conventional activated sludge systems. In this study, we investigated the degradation and toxicity of melamine in a membrane bioreactor (MBR) system operated at high activated sludge concentrations (∼8.5 g TSS/L). Melamine was dosed at 3 mg/L for about 100 days. The average melamine removal efficiency in the MBR system was 20 ± 11%. Meanwhile, batch studies showed the acclimated sludge from the MBR had higher removal efficiencies after the depletion of readily biodegradable substrate (acetate) while non-acclimated sludge did not remove any melamine. As acclimated sludge had removal efficiencies ranging from 33 ± 6% (by 1.7 g TSS/L biomass) to 41 ± 10% (by 8.5 g TSS/L biomass), microbial specialists with unique hydrolytic enzymes in the acclimated sludge were likely responsible for melamine degradation. Since bacteria prefer to use readily biodegradable substrates for growth in the MBR, the population of microbial specialists capable of degrading melamine or the capability of cometabolism appeared not to increase with an increase in biomass concentration. Nevertheless, because of high sludge concentrations and thus low mass ratio of toxic melamine to biomass in the MBR, the long-term melamine exposure did not affect MBR activated sludge performance.

The behavior of melamine in biological wastewater treatment system

Melamine (MA) is a significant raw material for industry and home furnishing, and an intermediate for pharmacy. However it is also a hazardous material when being added to food as a protein substitute due to the high nitrogen content. In this study, the behavior of MA in activated sludge was investigated. Experiments showed that MA was removed during biological wastewater treatment process, and the removal was mainly achieved by activated sludge adsorption instead of biodegradation. Low levels of MA (0.001-0.10mg/L) in wastewater had negligible influence on the performance of activated sludge, but high levels of MA deteriorated biological nitrogen and phosphorus removal. The presence of MA (1.00 and 5.00mg/L) decreased total nitrogen removal efficiency from 94.15% to 79.47% and 68.04%, respectively. The corresponding concentration of effluent phosphorus increased from 0.11 to 1.45 and 2.06mg/L, respectively. It was also observed that MA inhibited the enzyme activities of nitrite oxidoreductase, nitrate reductase, nitrite reductase and exopolyphosphatase, which were closely relevant to nitrogen and phosphorus removal. Further investigation showed that the presence of high MA concentrations promoted the consumption and synthesis of glycogen, thereby providing the advantage for the growth of glycogen accumulating organisms.

Bacterial biodegradation of melamine-contaminated aged soil: influence of different pre-culture media or addition of activation material

This study aimed to investigate the biodegrading potential of Arthrobacter sp. MCO, Arthrobacter sp. CSP, and Nocardioides sp. ATD6 in melamine-contaminated upland soil (melamine: approx. 10.5 mg/kg dry weight) after 30 days of incubation. The soil sample used in this study had undergone annual treatment of lime nitrogen, which included melamine; it was aged for more than 10 years in field. When R2A broth was used as the pre-culture medium, Arthrobacter sp. MCO could degrade 55 % of melamine after 30 days of incubation, but the other strains could hardly degrade melamine (approximately 25 %). The addition of trimethylglycine (betaine) in soil as an activation material enhanced the degradation rate of melamine by each strain; more than 50 % of melamine was degraded by all strains after 30 days of incubation. In particular, strain MCO could degrade 72 % of melamine. When the strains were pre-cultured in R2A broth containing melamine, the degradation rate of melamine in soil increased remarkably. The highest (72 %) melamine degradation rate was noted when strain MCO was used with betaine addition.

Biodegradation of cyromazine by melamine-degrading bacteria

Biodegradation of cyromazine was investigated in liquid cultures using three melamine-degrading bacteria Arthrobacter sp. MCO, Arthrobacter sp. CSP and Nocardioides sp. ATD6. Experiments were performed aerobically in a mineral medium with glucose as a carbon source and cyromazine as the sole nitrogen source. All three strains of bacteria degraded cyromazine. Cyromazine at 23 mg/L completely disappeared by Arthrobacter sp. MCO within 7 days. The bacterial density of all three strains increased with degradation of the cyromazine. The cyromazine metabolite N-cyclopropylammeline was detected and identified by ultra-performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS). This is the first report on the use of Arthrobacter sp. and Nocardioides sp. for cyromazine degradation and the occurrence of bacterial growth with cyromazine degradation.

Dimethylamine biodegradation by mixed culture enriched from drinking water biofilter

Dimethylamine (DMA) is one of the important precursors of drinking water disinfection by-product N-nitrosodimethylamine (NDMA). Reduction of DMA to minimize the formation of carcinogenic NDMA in drinking water is of practical importance. Biodegradation plays a major role in elimination of DMA pollution in the environment, yet information on DMA removal by drinking water biofilter is still lacking. In this study, microcosms with different treatments were constructed to investigate the potential of DMA removal by a mixed culture enriched from a drinking water biofilter and the effects of carbon and nitrogen sources. DMA could be quickly mineralized by the enrichment culture. Amendment of a carbon source, instead of a nitrogen source, had a profound impact on DMA removal. A shift in bacterial community structure was observed with DMA biodegradation, affected by carbon and nitrogen sources. Proteobacteria was the predominant phylum group in DMA-degrading microcosms. Microorganisms from a variety of bacterial genera might be responsible for the rapid DMA mineralization.

Operational performance, biomass and microbial community structure: impacts of backwashing on drinking water biofilter

Biofiltration has been widely used to reduce organic matter and control the formation of disinfection by-products in drinking water. Backwashing might affect the biofilters' performance and the attached microbiota on filter medium. In this study, the impacts of backwashing on the removal of dissolved organic carbon (DOC), dissolved organic nitrogen (DON) and N-nitrosamine precursors by a pilot-scale biological activated carbon (BAC) filtration system were investigated. The impacts of backwashing on biomass and microbial community structure of BAC biofilm were also investigated. Phospholipid fatty acid (PLFA) analysis showed that backwashing reduced nearly half of the attached biomass on granular activated carbon (GAC) particles, followed by a recovery to the pre-backwashing biomass concentration in 2 days after backwashing. Backwashing was found to transitionally improve the removal of DOC, DON and N-nitrosamine precursors. MiSeq sequencing analysis revealed that backwashing had a strong impact on the bacterial diversity and community structure of BAC biofilm, but they could gradually recover with the operating time after backwashing. Phylum Proteobacteria was the largest bacterial group in BAC biofilm. Microorganisms from genera Bradyrhizobium, Hyphomicrobium, Microcystis and Sphingobium might contribute to the effective removal of nitrogenous organic compounds by drinking water biofilter. This work could add some new insights towards the operation of drinking water biofilters and the biological removal of organic matter.

Melaminivora alkalimesophila gen. nov., sp. nov., a melamine-degrading betaproteobacterium isolated from a melamine-producing factory

A taxonomic study was carried out on strain CY1T, which is a novel bacterium isolated from wastewater sludge of a melamine-producing factory in Sanming city, Fujian, China. Strain CY1T was shown to rapidly and completely degrade melamine to NH3 and CO2 under aerobic conditions. The isolate was Gram-stain-negative, short-rod-shaped and motile by one unipolar flagellum. Growth was observed at salinities from 0 to 7 % NaCl (optimum, 0.1 %), at temperatures from 15 to 50 °C (optimum, 40–45 °C) and at pH 7–9.5 (optimum pH 9.5). Quinone-8 was detected as the major respiratory quinone. 16S rRNA gene sequence comparisons showed that strain CY1T was affiliated to the family Comamonadaceae in the class Betaproteobacteria . It was most closely related to members of the genera Alicycliphilus (95.5 %), Diaphorobacter (94.6–95.1 %), Acidovorax (92.9–95.4 %), Delftia (93.0–93.6 %) and Comamonas (92.6–93.9 %). The average nucleotide identity (ANI) values between strain CY1T and those representing related genera ranged from 84.0 to 86.1 % using Mummer, and from 74.9 to 81.1 % using blast. The dominant fatty acids were C16 : 1ω7c and/or C16 : 1ω6c, C16 : 0, C10 : 0 3-OH and C18 : 1ω7c and/or C18 : 1ω6c, and the major polar lipids consisted of phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol, one unidentified phospholipid and one unidentified aminophospholipid. The G+C content of the chromosomal DNA was 69.5 mol%. On the basis of the phenotypic and phylogenetic data, strain CY1T represents a novel species of a new genus, for which the name Melaminivora alkalimesophila gen. nov., sp. nov. is proposed. The type strain of Melaminivora alkalimesophila is CY1T ( = CCTCC AB 2012024T = DSM 26006T).

Characterization of a novel melamine-degrading bacterium isolated from a melamine-manufacturing factory in China

Melamine (2,4,6-triamino-1,3,5-triazine, C3H6N6), belonging to the s-triazine family, is an anthropogenic and versatile raw material for a large number of consumer products and its extensive use has resulted in the contamination of melamine in the environment. A novel melamine-degrading bacterium strain CY1 was isolated from a melamine-manufacturing factory in China. The strain is phylogenetically different from the known melamine-degrading bacteria. Approximately, 94 % melamine (initial melamine concentration 4.0 mM, initial cell OD 0.05) was degraded in 10 days without the addition of additional carbon source. High-performance liquid chromatography showed the production of degradation intermediates including ammeline, ammelide, cyanuric acid, biuret, and urea. Kinetic simulation analysis indicated that transformation of urea into ammonia was the rate-limiting step for the degradation process. The melamine-cyanurate complex was formed due to self-assembly of melamine and cyanuric acid during the degradation. The tracking experiment using CY1 cells and (13)C3-melamine showed that the CY1 could mineralize s-triazine ring carbon to CO2. The strain CY1 could also catalyze partial transformation of cyromazine, a cyclopropyl derivative of melamine, to 6-(cyclopropylamino)-[1,3,5]triazine-2,4-diol.

Toxicity of melamine: the public health concern

Melamine contamination in food has resulted in sickness and deaths of human infants, pets, and farm animals in the past decade. The majority of the victims suffered from acute kidney injury, nephrolithiasis, and urolithiasis. Since then, animal studies have revealed the possible target organs of the melamine toxicity and the extent of the adverse effects of the contaminant. State-of-the-art analytical methods have been developed to achieve the "zero tolerance" aim for such economically motivated adulteration. These studies provide in-depth understanding of the melamine toxicity and promising analytical methods, which can help us safeguard our dairy food source.