Modified montmorillonite and illite adjusted the preference of biotic and abiotic pathways of humus formation during chicken manure composting

Small molecule carbon sources drivers increase in heavy metal passivation during chicken manure composting by regulating microbial functional and metabolic pattern

The application of compost products to the soil impacts the soil microenvironment. Optimize the composting process is essential to minimize potential harm to the soil. This research aims to explore the effects of small molecular carbon source (SMCS) additives on the transformation of heavy metal (HM) fractions, bacterial community structure and metabolism functions to better comprehend the degradation of organic compounds and HM passivation during composting. The results indicate that the addition of SMCS accelerates the degradation of organic matter and total organic carbon. The exchangeable fraction (F1) of HM was effectively reduced. After adding SMCS, a significant change was observed at family and species levels in the 17th days, accounting for 20.0 %, 17.2 % and 32.3 %, 7.8 % respectively. Additionally, the incorporation of SMCS enhances the abundance of carbohydrate metabolism and amino acid metabolism pathways, while also modulating the microbial community composition essential for the effective transformation of HM fractions during the composting process. Finally, Variance partitioning analysis (VPA) results reveal that both environmental indicators and microbial communities play a role in metabolic function, with microbial community composition more significantly (explanation 22.8 %). These findings are of great significance for regulating HM passivation through metabolic pathways and achieving the green recycling of organic wastes.

Multi-omics reveal an overlooked pathway for H2S production induced by bacterial biogenesis from composting

Sulfate reduction has long been considered a leading cause of hydrogen sulfide (H2S) emissions from composting, causing serious air pollution and health threats. H2S biogenesis through cysteine cleavage is a known pathway for bacteria to resist oxidative stress. However, whether the biogenesis pathway exacerbates H2S emission during composting with dramatic temperature changes and oxidative stress is largely unknown. Here, we used DL-propargylglycine (PAG), an inhibitor of cysteine lyase (cystathionine γ-lyase), to explore the contribution of biogenesis pathway to H2S production during composting with different aeration rates. We found that PAG addition significantly inhibited H2S emission by 45.52 % and 19.74 % at high and low aeration rates, respectively. PAG addition reduced the diversity of core bacteria associated with H2S production. Metagenomic and metaproteomic analysis further revealed that PAG decreased the abundance of sulfate reduction genes, down-regulated the expression of cysteine lyases, and up-regulated the catalase expression. Therefore, both sulfate reduction and biosynthesis contributed to the H2S production, and PAG inhibited both pathways. Finally, microbial pure culture experiment further verified the effectiveness of PAG in reducing H2S emission of composting. This work reveals an overlooked pathway for H2S production during composting, which fills the research gap in the role of the biogenesis pathway in composting H2S emission. This provides breakthrough guidance for future environmental management and pollution control at source.

Harnessing the potential of exogenous microbial agents: a comprehensive review on enhancing lignocellulose degradation in agricultural waste composting

Composting converts organic agricultural wastes into value-added products, yet the presence of significant non-biodegradable lignocelluloses hinders its efficiency. The introduction of various exogenous microbial agents has been shown to effectively addresses this challenge. In this context, basing on the microbial enzymatic mechanism for lignocellulose degradation, this paper synthesizes the latest research advancements and practical applications of exogenous microbial agents in agricultural waste composting. Given that the effectiveness of lignocellulose degradation is highly dependent on the waste's inherent characteristics, it is crucial to carefully consider the composition of fungi and bacteria, the dosage of microbial agents, and the composting process operation, tailored to the specific type of agricultural waste. Moreover, the combination of additives with exogenous microbial agents can further enhance the degradation of lignocelluloses and the humification of organic matters. Furthermore, insights into the future research and application trends of exogenous microbial agents in agricultural waste composting was prospected.

Vermiculite changed greenhouse gases emission and microbial community succession in vermicomposting: Particle size investigation

Greenhouse gas emissions during composting inevitably cause environmental pollution. This study investigated the effects of 10 % vermiculite of four particle sizes (<1.5 mm, 1.5-3 mm, 3-5.5 mm and 5.5-8 mm) on greenhouse gas emissions during vermicomposting of corn stover and cow dung. The results revealed that vermiculite reduced CH4 and N2O emissions but increased CO2 emissions. Vermiculite with a particle size of 3-5.5 mm presented the greatest environmental benefits, increasing cumulative CO2 emissions by 19 % and reducing CH4 and N2O emissions by 49 % and 62 %, respectively. A negative correlation was found between the specific surface area of vermiculite and cumulative greenhouse gas emissions (r = -0.7949). Furthermore, vermiculite intensified microbial interactions and accelerated microbial community succession. These results have important implications for understanding how vermiculite regulates greenhouse gas emissions and microbial mechanisms during the vermicomposting process.

Effect of iron-based nanomaterials on organic carbon dynamics and greenhouse gas emissions during composting process

Iron-based nanomaterials as effective additives can enhance the quality and safety of compost. However, their influence on organic carbon fractions changes and greenhouse gas emissions during composting remains unclear. This study demonstrated that iron-based nanomaterials facilitate the conversion of light organic carbon fraction into heavy organic carbon fraction, with the iron-based nanomaterials group showing a significantly higher heavy organic carbon fraction content (41.88%) compared to the control group (35.71%). This shift led to an increase in humic substance content (77.5 g/kg) and a reduction in greenhouse gas emissions, with CO2, CH4, and N2O emissions decreasing by 20.5%, 39.7%, and 55.4%, respectively. Additionally, CO2-equivalent emissions were reduced by 42.9%. Microbial analysis revealed that iron-based nanomaterials increased the abundance of Bacillus and reduced the abundance of methane-producing archaea such as Methanothermobacter and Methanomassiliicoccus. These results indicated that the role of iron-based nanomaterials in regulating reactive oxygen species production and specific microbial communities involved in humification process. This study provides a practical strategy for improving waste utilization efficiency and mitigating climate change.

Straw degradation enhanced in Thermomyces lanuginosus by transferring AgCMCase from Aspergillus glaucus

Fungi play a crucial role in straw composting due to the synergistic degradation effects of their secreted lignocellulose hydrolases. An efficient straw-composting system relies on thermophilic fungi and their lignocellulose hydrolases. Thermomyces lanuginosus, a typical thermophilic fungus in compost, lacks cellulase genes. A versatile Thermomyces strain capable of degrading cellulose, T. lanuginosus M85, which grows at 67 °C, was developed and transformed using the AgCMCase of Aspergillus glaucus. The R6 transformant exhibited high-level expression of the AgCMCase. Significant quantities of active cellulase produced by R6 were detected in the cellulose fermentation broth, peaking within 6-8 days. Compost analysis indicated that R6 increased the internal compost temperatures and prolonged high-temperature durations. Correspondingly, more reducing sugars and humus were released, which could promote plants growth. In summary, a cellulase-producing strain of T. lanuginosus capable of efficiently converting straws into organic fertilizers was engineered. This innovation holds considerable promise for sustainable and circular agricultural practices.

Biochar promotes compost humification by regulating bacterial and fungal communities

Introduction

Humus can be formed during composting through biological pathways, nonetheless, the mechanisms through which bacterial and fungal communities govern the development of humus in compost with the addition of biochar remain uncertain.

Methods

In this study, compost with cow dung and maize stover as feedstock was employed as a control group, and compost with 10% biochar added on top of the feedstock was adopted as a treatment group to investigate the effect of bacterial and fungal communities on humus formation during biochar composting.

Results and Discussion

The results demonstrated that the humic acid content increased by 24.82 and 25.10% at the cooling and maturation stages, respectively, after adding biochar. Besides, the degree of polymerization content in the maturation stage was elevated by 90.98%, which accelerated the humification process of the compost. During the thermophilic and maturity stages, there was a respective increase of 51.34 and 31.40% in reducing sugar content, suggesting that the inclusion of biochar could furnish ample reducing sugar substrate for the Maillard reaction. The addition of biochar reduced the number of humus precursor-associated genera by 35, increased the number of genera involved in humus synthesis by two, and enhanced the stability of the cross-domain network between bacteria and fungi, which confirms that microorganisms contribute to the humification process by decreasing humus precursor consumption as well as increasing humus synthesis with the addition of biochar. Additionally, adding biochar could enhance the humification capacity of the compost pile by dominating the Maillard reaction with reducing sugars as the substrate and strengthening the function of humus synthesis-associated genera. This study enhances our comprehension of the regulatory pathways of biochar in the humification process during composting.

Effect of thermal treatment of illite on the bioavailability of copper and zinc in the aerobic composting of pig manure with corn straw

The large amount of various types of heavy metals in animal manure applied to agricultural field has caused severe threat to the ecosystems of soil environments. In this study, the effect of thermal treatment of illite on the bioavailability of copper (Cu) and zinc (Zn) in the aerobic composting of pig manure with corn straw biochar was investigated. The objectives of this study were to characterize the variations in the bioavailability of Cu and Zn in the aerobic composting of pig manure added with illite treated with high temperatures and to identify the relatively dominant microbes involved in the formation of humus and passivation of heavy metals in pig manure composting based on 16S rRNA high-throughput sequencing analysis. The results showed that in comparison with the raw materials of pig manure, the bioavailability of Zn and Cu in the control and three experimental composting groups, i.e., group I (with untreated illite), group I-2 (with illite treated under 200°C), and group I-5 (with illite treated under 500°C), was decreased by 27.66 and 71.54%, 47.05 and 79.80%, 51.56 and 81.93%, and 58.15 and 86.60%, respectively. The results of 16S rRNA sequencing analysis revealed that in the I-5 group, the highest relative abundance was detected in Fermentimonas, which was associated with the degradation of glucose and fructose, and the increased relative abundances were revealed in the microbes associated with the formation of humus, which chelated with Zn and Cu to ultimately reduce the bioavailability of heavy metals and their biotoxicity in the compost. This study provided strong experimental evidence to support the application of illite in pig manure composting and novel insights into the selection of appropriate additives (i.e., illite) to promote humification and passivation of different heavy metals in pig manure composting.

Response of phosphorus fractions transformation and microbial community to carbon-to-phosphorus ratios during sludge composting

Phosphorus (P) is one of the essential nutrient elements for plant growth and development. Sludge compost products can be used as an important source of soil P to solve the shortage of soil P. The difference in the initial carbon-to-phosphorus ratio (C/P) will lead to difference in the bacterial community, which would affect the biological pathway of P conversion in composting. However, few studies have been reported on adjusting the initial C/P of composting to explore P conversion. Therefore, this study investigated the response of P component transformations, bacterial community and P availability to C/P during sludge composting by adjusting initial C/P. The results showed that increasing C/P promoted the mineralization of organic P and significantly increased the content of the labile P. High C/P also increased the relative content of available P, especially when the C/P was at 45 and 60, it reached 60.51% and 60.47%. High C/P caused differences in the community structure, and improved the binding ability of microbial network modules and the competitiveness of microbial communities. Additionally, high C/P strengthened the effect of microbial communities on the transformation of P components. Finally, the study showed that C/P was the main contributor to P content variation (64.7%) and indirectly affected P component conversion by affecting the microbial community. Therefore, adjusting the C/P is crucial to improve the P utilization rate of composting products.

The positive effect of the enzyme inducer (MnSO4) on the formation of humic substance in rice straw composting by stimulating key microorganisms

This study investigated the impact of adding enzyme inducer (MnSO4) on humic substance (HS) formation during straw composting. The results demonstrated that both enzyme inducer treatment group (Mn) and functional microorganism treatment group (F) led to an increase in the content of HS compared to the treatment group without enzyme inducer and functional microorganism (CK). Interestingly, the enzyme inducer exhibited a higher promoting effect on HS (57.80 % ~ 58.58 %) than functional microbial (46.54 %). This was because enzyme inducer stimulated the growth of key microorganisms and changed the interaction relationship between microorganisms. The structural equation model suggested that the enzyme inducer promoted the utilization of amino acids by the fungus and facilitated the conversion of precursors to humic substance components. These findings provided a direction for improving the quality of composting products from agricultural straw waste. It also provided theoretical support for adding MnSO4 to compost.

Greenhouse gas emission characteristics during kitchen waste composting with biochar and zeolite addition

Aerobic kitchen waste composting can contribute to greenhouse gas (GHGs) emissions and global warming. This study investigated the effects of biochar and zeolite on GHGs emissions during composting. The findings demonstrated that biochar could reduce N2O and CH4 cumulative releases by 47.7 %and 47.9 %, respectively, and zeolite could reduce the cumulative release of CO2 by 28.4 %. Meanwhile, the biochar and zeolite addition could reduce the abundance of potential core microorganisms associated with GHGs emissions. In addition, biochar and zeolite reduced N2O emissions by regulating the abundance of nitrogen conversion functional genes. Biochar and zeolite were shown to reduce the impact of bacterial communities on GHGs emissions. In summary, this study revealed that biochar and zeolite can effectively reduce GHG emissions during composting by altering the compost microenvironment and regulating microbial community structure. Such findings are valuable for facilitating high-quality resource recovery of organic solid waste.

Using CuMgFe layered double oxide to replace laccase as a catalyst for abiotic humification

Humification offers a promising avenue for sequestering dissolved organic carbon while facilitating environmental cleanup. In this study, CuMgFe layered double oxides (LDO) were applied as a catalyst to replace conventional enzymes, such as laccase, thereby enhancing the in vitro polyphenol-Maillard humification reaction. CuMgFe LDO was synthesized through calcination of CuMgFe layered double hydroxides (LDH) at 500 °C for 5 h. A suite of characterization methods confirmed the successful formation into mixed oxides (Cu2O, CuO, MgO, FeO, and Fe2O3) after thermal treatment. A rapid humification reaction was observed with CuMgFe LDO, occurring within a two-week span, likely due to a distinct synergy between copper and iron elements. Subsequent analyses identified that MgO in CuMgFe LDO also played a pivotal role in humification by stabilizing the pH of the reaction. In the absence of magnesium, LDO's humification activity was more pronounced in the early stages of the reaction, but it rapidly diminished as the reaction progressed. The efficiency of CuMgFe LDO was heightened at elevated temperatures (35 °C), while light conditions manifested a discernible effect, with a modest decrease in humification efficacy under indoor light exposure. CuMgFe LDO surpassed both laccase and MgFe LDH in performance, boasting a superior humification efficiency relative to its precursor, CuMgFe LDH. The catalysts' humification activity was modulated by their crystallinity and valence dynamics. Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) results suggested that introducing the amino acid, glycine, expedited the CuMgFe LDO-fueled humification, enhancing the formation of C-N and C-C bonds in the resultant products. The humic-like substances derived from the catalyst-enhanced reaction displayed an elevated presence of aromatic configurations and a richer array of oxygen functional groups in comparison to a typical commercial humic material.

Insight into bacterial role attribution in dissolved organic matter humification during rice straw composting with microbial inoculation

This study aims to investigate the effect of microbial role distribution in microbial carbon pumps on dissolved organic matter (DOM) humification during rice straw composting with microbial inoculation. Three composting groups were designed, named CK (control), B4 (with Bacillus subtilis, OR058594) and Z1 (with Aspergillus fumigatus, AF202956.1). As a result of inoculation, the composition of microbial communities was changed, so that the microorganisms that promoted DOM humification were concentrated in the responders in the microbial carbon pump. DOM was divided into three components in three composting treatments: C1, C2 and C3. After inoculation with Bacillus subtilis, the C2 component was significantly affected, while after inoculation with Aspergillus fumigatus, the C3 component was significantly affected. The results of physicochemical factors affecting the transformation of DOM fluorescence components indicated that C1, C2 and C3 were related to the abundance of the cellulose-degrading enzyme-encoding gene GH7 in CK and B4 composting. However, the C2 was susceptible to organic matter in Z1 composting. This study explored the distribution of microbial communities from a new perspective, which provided new information for analyzing DOM humification and treating agricultural straws to achieve clean conditions for environmental friendliness.

Insight into the pathways of biochar/smectite-induced humification during chicken manure composting

As representative organic and inorganic additives, both biochar and smectite exhibit an excellent capacity to improve humification efficiency during composting. Nevertheless, the mechanisms underlying biochar/smectite-induced compost humification have still not been fully explored from the perspective of overall organic substances. In this study, three composting treatments were performed as follows: 10 % biochar-amended composting, 10 % smectite-amended composting and natural composting without any additive. UV-visible parameters and synchronous hetero two-dimensional correlation spectra showed that biochar accelerated dissolved organic matter (DOM) complications, unsaturation and aromatization. For example, biochar promoted the C2 and simple C3 peaks to convert into a sophisticated C3/360 peak. However, the effect of smectite was negligible in complicating the DOM structure. Both biochar and smectite displayed an invigorating role in promoting humic substance (HS) formation. The strengthened relations between bacterial richness and physicochemical indicators and HS fractions might contribute to the positive action of biochar/smectite on HS synthesis. Network analysis showed that both bacterial functional omnipotence and specialization in response to the addition of catalysts may contribute to compost humification. The chemical pathway involved in DOM humification was intensified by enhancing the role of pH in biochar composting and weakening the degradation of unsaturated aromatic compounds of DOM with smectite addition. These findings benefit the practical application of biochar/smectite in promoting composting efficiency.

Artificial Humic Substances as Biomimetics of Natural Analogues: Production, Characteristics and Preferences Regarding Their Use

Various processes designed for the humification (HF) of animal husbandry wastes, primarily bird droppings, reduce their volumes, solve environmental problems, and make it possible to obtain products with artificially formed humic substances (HSs) as analogues of natural HSs, usually extracted from fossil sources (coal and peat). This review studies the main characteristics of various biological and physicochemical methods of the HF of animal wastes (composting, anaerobic digestion, pyrolysis, hydrothermal carbonation, acid or alkaline hydrolysis, and subcritical water extraction). A comparative analysis of the HF rates and HS yields in these processes, the characteristics of the resulting artificial HSs (humification index, polymerization index, degree of aromaticity, etc.) was carried out. The main factors (additives, process conditions, waste pretreatment, etc.) that can increase the efficiency of HF and affect the properties of HSs are highlighted. Based on the results of chemical composition analysis, the main trends and preferences with regard to the use of HF products as complex biomimetics are discussed.

Quorum sensing in different subcommunities becomes the key factor affecting the humification of the aerobic composting system with sauerkraut fermentation wastewater

Aerobic composting is an effective and harmless method to treat Sauerkraut fermentation wastewater (SFW). Given the limited understanding of the effect of quorum sensing (QS) on humification in subcommunities under acidic environments, a large-scale analysis was conducted to identify features that impact the response of QS to humification in different subcommunities. The results showed that the addition of SFW directly affected humification in subcommunities A and C, and the abundances of functional genes related to carbon fixation and carbon degradation were significantly increased at 7 and 15 d, respectively. In addition, subcommunity B indirectly affected humus production but regulated carbon metabolic pathways such as glycolysis/gluconeogenesis and pentose phosphate by QS with subcommunities B. These findings provide a novel perspective for analysing the regulation of humification in aerobic composting and suggest that composting has potential applications in organic wastewater treatment.

Independent and combined effects of sepiolite and palygorskite on humus spectral properties and heavy metal bioavailability during chicken manure composting

The effects of the independent and combined addition strategies of sepiolite and palygorskite on humification and heavy metals (HMs) during chicken manure composting were evaluated. Results showed that clay mineral addition showed a favorable effect on composting, prolonged the duration of the thermophilic phase (5-9 d) and improved the TN content (14%-38%) compared to CK. Independent strategy enhanced the humification degree in equal measures with the combined strategy. Carbon nuclear magnetic resonance spectroscopy (¹³C NMR) and fourier transform infrared spectroscopy (FTIR) confirmed that aromatic carbon species increased by 31%-33% during composting process. Excitation-emission matrix (EEM) fluorescence spectroscopy showed that humic acid-like compounds increased by 12%-15%. In addition, the maximum passivation rate of Cr, Mn, Cu, Zn, As, Cd, Pb and Ni were 51.35%, 35.98%, 30.39%, 32.46%, -87.02%, 36.61% and 27.62%, respectively. The independent addition of palygorskite exhibits the most potent effects for most HMs. Pearson correlation analysis indicated that pH and aromatic carbon were the key determinants of the HMs passivation. This study provided preliminary evidence and perspective of the application of clay minerals on the humification and safety of composting.

Identification of driving factors of lignocellulose degrading enzyme genes in different microbial communities during rice straw composting

The study aims to clarify the driving factors of lignocellulose degrading enzyme genes abundance during rice straw composting. Lignocellulose degrading strains b4 (Bacillus subtilis), z1 (Aspergillus fumigatus) were inoculated into pure culture, respectively. Meanwhile, three rice straw composting groups were set up, named CK (control), B4 (inoculating b4) and Z1 (inoculating z1). Results confirmed the composition of functional genes related to lignocellulose metabolism for strains. Lignocellulose degrading enzyme genes abundance was up-regulated by inoculation, which promoted the decomposition of lignocellulose. Modular microorganisms, such as Actinobacteria, Proteobacteria, Ascomycetes and Basidiomycetes, were identified as driving factors that affected lignocellulose degrading enzyme genes abundance. pH, organic matter and soluble sugar content affected lignocellulose degrading enzyme genes abundance by affecting modular microorganisms. In addition, a potential priming effect was put forward based on the driving factors. This study provided theoretical guidance for regulating the abundance of lignocellulose degrading enzyme genes to promote lignocellulose degradation.

Optimization of composting methods for efficient use of cassava waste, using microbial degradation

With the recent revolution in the green economy, agricultural solid waste resource utilization has become an important project. A small-scale laboratory orthogonal experiment was set up to investigate the effects of C/N ratio, initial moisture content and fill ratio (v_{cassava residue}: v_gravel) on the maturity of cassava residue compost by adding Bacillus subtilis and Azotobacter chroococcum. The highest temperature in the thermophilic phase of the low C/N ratio treatment is significantly lower than the medium and high C/N ratios. The C/N ratio and moisture content have a significant impact on the results of cassava residue composting, while the filling ratio only has a significant impact on the pH value and phosphorus content. Based on comprehensive analysis, the recommended process parameters for pure cassava residue composting are a C/N ratio of 25, an initial moisture content of 60%, and a filling ratio of 5. Under these conditions, the high-temperature conditions can be reached and maintained quickly, the organic matter has been degraded by 36.1%, the pH value has dropped to 7.36, the E4/E6 ratio is 1.61, the conductivity value has dropped to 2.52 mS/cm, and the final germination index increased to 88%. The thermogravimetry, scanning electron microscope, and energy spectrum analysis also showed that the cassava residue was effectively biodegraded. Cassava residue composting with this process parameter has great reference significance for the actual production and application of agriculture.

Succession of the microbial communities and metabolic functions in composting or deep burial processing of dead chickens

1. This study examined the effects of composting and deep burial techniques on degradation efficiency of dead chickens. Different raw materials (crushed branches or rape straws) and disinfectants (quicklime or bleaching powder) were applied in composting and deep burial process, respectively. The whole process lasted for 90 d in both summer and winter.2. High throughput sequencing displayed that Firmicutes, Proteobacteria, Bacteroidetes, Actinobacteria and Deinococcus-Thermus were the most dominant bacterial phyla during the experiment. The relative abundance of Firmicutes dwindled gradually with prolonged composting duration, while Proteobacteria, Bacteroidetes and Deinococcus-Thermous increased gradually over time.3. The bacterial functions identified from the KEGG pathway showed that amino acid and carbohydrate metabolism were the major microbial metabolic pathways that determined final degradation efficiency. At the end of the trial, the decomposition status of chicken carcases and faecal coliforms were measured.4. The results demonstrated that the optimum decomposition effect was obtained in composting compared with other treatment groups. Low ambient temperature reduced degradation efficiency, due to restricted microbial activity. In addition, faecal coliforms were not completely removed by the deep burial process of dead chickens in winter.5. These findings provide a theoretical basis for the feasibility of composting chicken carcases instead of deep burial.

Improving the humification by additives during composting: A review

Humic substances (HSs) are key indicators of compost maturity and are important for the composting process. The application of additives is generally considered to be an efficient and easy-to-master strategy to promote the humification of composting and quickly caught the interest of researchers. This review summarizes the recent literature on humification promotion by additives in the composting process. Firstly, the organic, inorganic, biological, and compound additives are introduced emphatically, and the effects and mechanisms of various additives on composting humification are systematically discussed. Inorganic, organic, biological, and compound additives can promote 5.58-82.19%, 30.61-50.92%, 2.3-40%, and 28.09-104.51% of humification during composting, respectively. Subsequently, the advantages and disadvantages of various additives in promoting composting humification are discussed and indicated that compound additives are the most promising method in promoting composting humification. Finally, future research on humification promotion is also proposed such as long-term stability, environmental impact, and economic feasibility of additive in the large-scale application of composting. It is aiming to provide a reference for future research and the application of additives in composting.

Composition, distribution, and source of organic carbon in surface sediments of Erhai Lake, China

Lake sediment is an important organic carbon (OC) sink. Nevertheless, few studies have been conducted on sediment organic carbon (SOC) in lakes, and the effects of environmental variables on SOC pools remain poorly understood. We combined physicochemical and spectroscopic analyses to investigate the composition, distribution, and source of OC in surface sediments of Erhai Lake, southwest China, and explored the relationships between environmental variables and its SOC pool. The SOC pool consists of relatively high proportions of labile organic carbon fractions, mainly from algal production, which are rapidly decomposed and exhibit high turnover rates. The relative content of humus carbon ranges from 13.5 % to 20.5 %, with fulvic acid carbon predominating (average 52.95 %), indicating weak humification and a relatively active humus carbon pool. The dissolved organic matter in water column and sediments of Erhai Lake is largely influenced by endogenous production, with a great contribution from phytoplankton. Surface sediments contained more protein-like components than overlying waters (80.0 % vs. 63.0 %), attributed mainly to abundant algal deposition and intense bacterial metabolism. Among environmental variables, sediment chlorophyll a showed the strongest relationship with the SOC pool, and was associated with rapid decomposition and promotion of the humification process, which supported the conclusion that algae had an important influence on the SOC pool. The SOC pool in the southern region of the lake is mainly contributed by algae, other microorganisms, and sewage, exhibiting a greater potential to release organic matters into the water column. The center and northern SOC pools show relatively stable characteristics and stronger OC sink capacity, mainly because of the input of terrestrial refractory organic matters from runoff. Our data shed light on the OC storage mechanisms in the surface sediments of Erhai Lake and provide theoretical bases for enhancing the OC sink of sediments in the lake.

Investigating the use of synthetic humic-like acid as a soil amendment for metal-contaminated soil

Humic acid can effectively bind several metals and is regarded as a promising soil amendment. In this study, a novel synthetic humic-like acid (SHLA) was applied as a soil amendment to immobilize metals (Cu, Zn, Ni, As) in a contaminated agricultural soil (pH 6.17 ± 0.11; total organic carbon 5.91 ± 0.40%; Cu 302.86 ± 3.97 mg/kg; Zn 700.45 ± 14.30 mg/kg; Ni 140.16 ± 1.59 mg/kg). With increasing additions of SHLA from 0 to 10% (w/w), the soil pH constantly decreased from 6.17 ± 0.11 to 4.91 ± 0.10 (p < 0.001), while both total organic carbon (from 6.10 ± 0.12% to 10.55 ± 0.18%) and water-soluble carbon content (from 171.01 ± 10.15 mg/kg to 319.18 ± 20.74 mg/kg) of soil significantly increased (p < 0.001). Based on the results of 0.01 M CaCl2-extractable concentration of different metals, SHLA could lower the bioavailability of Cu (from 1.26 ± 0.04 mg/kg to 0.55 ± 0.05 mg/kg), Zn (from 6.74 ± 0.12 mg/kg to 3.26 ± 0.23 mg/kg), and Ni (from 5.16 ± 0.07 mg/kg to 0.12 ± 0.02 mg/kg), but increase the bioavailability of As (from 0.31 ± 0.02 to 1.83 ± 0.09 mg/kg). The immobilization mechanisms of metals in soils amended with SHLA involved surface complexation, electrostatic attraction, and cation-π interaction. Overall, SHLA shows great potential as a soil amendment for cationic heavy metal immobilization.

Molecular transformation of dissolved organic matter and formation pathway of humic substances in dredged sludge under aerobic composting

Using Fourier transform-ion cyclotron resonance mass spectrometry (FT-ICR MS) and molecular reaction network analysis, this study investigated molecular transformation of dissolved organic matter (DOM) and formation pathway of humic substances (HS) in dredged sludge during aerobic composting. The results showed that macromolecular N-containing compounds in dredged sludge are abundantly transformed into unsaturated and aromatic oxygenated compounds, exhibiting physicochemical properties similar to those of humus. Especially, N-containing compounds with one nitrogen atom are susceptible to oxidative deamination. Furthermore, assemblages of reactive fragments (e.g., -C7H8O2, -C10H12O2, -C2H2O2, and -C4H6O2) were identified as potential precursors to HS formed by the following reactions: starting with protein deamination and desulfurization, lignin delignification cascaded, finally decarbonylation occurred. This work provides novel insight for optimizing the process of stabilization and humification of dredged sludge.

Meat and bone meal stimulates microbial diversity and suppresses plant pathogens in asparagus straw composting

Meat and bone meal (MBM), as slaughterhouse waste, is a potential biostimulating agent, but its efficiency and reliability in composting are largely unknown. To access the MBM application to the composting process of asparagus straw rice, we followed the composting process for 60 days in 220-L composters and another 180 days in 20-L buckets in treatments applied with MBM or urea. The microbial succession was investigated by high-throughput sequencing. Compared with urea treatments, MBM addition stabilized pH and extended the thermophilic phase for 7 days. The germination index of MBM treatments was 24.76% higher than that of urea treatments. MBM also promoted higher microbial diversity and shifted community compositions. Organic matter and pH were the most significant factors that influence the bacterial and fungal community structure. At the genus level, MBM enriched relative abundances of organic matter-degrading bacteria (Alterococcus) and lignocellulose-degrading fungi (Trichoderma), as well as lignocellulolytic enzyme activities. Notably, MBM addition decreased sum abundances of plant pathogenic fungi of Phaeoacremonium, Acremonium, and Geosmithia from 17.27 to 0.11%. This study demonstrated the potential of MBM as an effective additive in asparagus straw composting, thus providing insights into the development of new industrial aerobic fermentation.

Effect of attapulgite on heavy metals passivation and microbial community during co-composting of river sediment with agricultural wastes

This paper investigated the effects of attapulgite addition on the physicochemical processes, heavy metal transformation, and microbial community during the composting of agricultural wastes and sediment. In addition, the correlation between environmental factors, heavy metals (HMs), and microbial community was also assessed by redundancy analysis (RDA). The results showed that pile B with attapulgite addition entered the thermophilic phase earlier and lasted longer than pile A as the control group. The reduction in the bioavailability of HMs (Cr, Cd, and Zn) was also greater in pile B, and the passivation of HMs was ranked as Cd > Zn > Cr. The relative abundance of phylum Proteobacteria, Firmicutes, Bacteroidetes, and Actinobacteria was the highest throughout the composting process. Furthermore, the RDA showed that the bacterial community composition was significantly correlated with temperature and C/N ratio in pile A, while significantly correlated with organic matter and pH in pile B. And the addition of attapulgite facilitated the conversion of HMs into more stable fractions by Pseudomonas. The study would provide a reference for the application of attapulgite to remediate the river sediment polluted by HMs.

Superphosphate, biochar, and a microbial inoculum regulate phytotoxicity and humification during chicken manure composting

The germination index (GI) is the best index for evaluating compost phytotoxicity and maturity. In order to improve GI and reduce phytotoxicity of chicken manure compost, superphosphate, biochar, and a microbial inoculum were added in this study. Maturity indices (pH, electrical conductivity, and GI), water-soluble ion, organic matter, humic acid, humic precursor contents, and the bacteria community were analyzed during the experiment. NH₄⁺, volatile fatty acids, and humic acid strongly affected the GI, which increased as the humic acid content increased and the volatile fatty acid and NH₄⁺ contents decreased. The three additives affected compost maturity differently. Adding biochar decreased microbial diversity and complexity, but improved the GI mainly by affecting abiotic factors. Adding the microbial inoculum increased biotic activity and promoted humus and precursor formation. Superphosphate activated core functional bacteria and increased bacterial diversity and complexity, and 16 genera and 2 phyla (Gemmatimonadota and Chloroflexi) were found only in this composting pile. Superphosphate markedly accelerated humification and decreased the salt (NH₄⁺ and NO₃^-) and heavy metal ion (Cu²⁺, Cd²⁺, Cr³⁺) contents, forming stable substances to reduce the key phytotoxic matters, which in turn decreased the compost phytotoxicity and improved the GI. These results provide a new sight for promoting maturity by functional material regulation in composting.

The functions of potential intermediates and fungal communities involved in the humus formation of different materials at the thermophilic phase

Humus is the final product of humus precursors (HPS) during the humification process, while the associated mechanisms of humus formation have not been clarified. Here, the HPS degradation intermediate and core fungal function for wheat straw and chicken manure compost (SCM), cow dung compost (CD), Chinese traditional medicine residue compost (CTM) and mushroom dreg and chicken manure compost (MCM) was investigated during the thermophilic phase. The results showed SCM and MCM were rich in proteins, lipids, cellulose, low-molecular-weight organic acids, while CD and CTM contained abundant carbohydrates, aliphatic compounds, easily biodegradable aromatic structures, and intermediates from the lignocellulose degradation. In particular, the HPS degrading intermediates including O-alkyl-C and aromatic C compounds were the critical factors, and Scedosporium, Hypsizygus and Remersonia were the core fungal genera for the humification. Furthermore, the potential fungal functional genes involved in carbohydrate and lignin degradation might be the key factors to drive the humification process.

Composted Rabbit Manure as Organic Matrix for Manufacturing Horticultural Growing Media: Composting Process and Seedling Effects

This study investigated composted rabbit manure as an organic matrix to replace peat for manufacturing horticultural growing media, where three kinds of rabbit manures were composted with temperatures > 50 °C lasting > 7 days, with a germination index > 70%. The heavy metal contents in rabbit manure were far lower than the thresholds in Chinese standards for safe use as horticultural growing media. Then, different ratios of compost and peat were mixed with perlite and vermiculite to manufacture growing media, which were evaluated in a 28-day seedling experiment with cabbage. The manufactured growing media characteristics could satisfy the seedlings’ requirements; air spaces in particular were improved from 15.7% to up to 28.7% by mixing composted manure. Seedling emergence percentages > 90% and good seedling qualities (including enhanced root length, seedling height, and chlorophyll content) indicated that composted rabbit manure could effectively replace peat to manufacture horticultural growing media. The best seedling performance was obtained with the following ratio of composted manure, peat, perlite, and vermiculite: 3:3:2:2. However, the mixing ratio could be further optimized, and other methods to reduce the salinity may be required for the different requirements of specific crops in further research.

Identifying the role of fired clay minerals on reducing of nitrogen loss and immobilization of organic nitrogen during chicken manure composting

This study compared effects of clay minerals before and after firing in immobilization of organic nitrogen and reducing of nitrogen loss during chicken manure composting. The clay minerals and fired clay minerals treatments increased organic nitrogen contents and significantly reduced nitrogen loss, the loss was in order CK (52.61%) > M (47.15%) > I (45.90%) > M- (42.58%) > I- (40.59%). Meanwhile, network analysis indicated that core bacterial community associated with nitrogen transformation were more abundant, and conversion effect of single core bacteria on nitrogen components was enhanced in fired clay minerals treatments. In addition, fired clay minerals strengthened correlation between environmental factors, bacterial community and organic nitrogen, and enhanced interaction of abiotic and biotic pathways, which verified by variance partitioning analysis and structural equation model. Therefore, fired clay minerals play a remarkable driving role in formation and immobilization of organic nitrogen.

Immobilization pathways of heavy metals in composting: Interactions of microbial community and functional gene under varying C/N ratios and bulking agents

Excessive heavy metals (HMs) in livestock manure due to additives over-use limits its recycling through composting. However, few studies have investigated the interactive influence of microbial communities, functional genes, and environmental factors in HM immobilization during composting. Therefore, treatments with different C/N ratios (15:1, 20:1, 25:1) and bulking agents (maize straw, green waste, vinasse) were conducted to explore the HMs immobilization pathways using structural equation model (SEM). Results confirmed the promoting effect of C/N ratio of 20:1 and vinasse on microbial diversity, thus leading to greater HMs immobilization rate. Meanwhile, the dominant microbial phyla of Cu/Zn, Cd, As, and Cr were identified as Proteobacteria, Firmicutes, Chytridiomycota, and Bacteroidota, respectively. Moreover, the significant correlation between functional genes (copC, mt, cbh1, aoxB, yieF) and HMs illustrated potential immobilization effects of metal-binding proteins on Cu and Zn, humus complexation on Zn, and oxidase/reductase on As/Cr. Finally, SEM indicated that the redistribution of Cu, Zn, As, and Cr fractions was interactively influenced by environmental factors (organic matter, pH, electrical conductivity, and total phosphorus), microbial communities, and functional genes, while Cd was directly regulated by organic matter and total phosphorus. These results may provide a deeper understanding of HM immobilization pathways during swine manure composting.

Microhabitat drive microbial anabolism to promote carbon sequestration during composting

Transforming organic waste into stable carbon by composting is an eco-friendly way. However, the complex environment, huge microbial community and complicated metabolic of composting have limited the directional transformation of organic carbon, which is also not conducive to the fixation of organic carbon. Therefore, this review is based on the formation of humus, a stable by-product of composting, to expound how to promote carbon fixation by increasing the yield of humus. Firstly, we have clarified the transformation regularity of organic matter during composting. Meanwhile, the microhabitat factors affecting microbial catabolism and anabolism were deeply analyzed, in order to provide a theoretical basis for the micro habitat regulation of directional transformation of organic matter during composting. Given that, a method to adjust the directional humification and stabilization of organic carbon has been proposed. Hoping the rapid reduction and efficient stabilization of organic waste can be realized according to this method.

Identifying the role of exogenous amino acids in catalyzing lignocellulosic biomass into humus during straw composting

This study was aimed at exploring the mechanism of promoting humus formation by the addition of exogenous amino acids. Amino acids not only participated in the synthesis of humus directly as precursors, but also changed the functions of bacterial communities. The composition and diversity of bacterial community changed with the addition of amino acids. The ability of bacterial community to degrade lignocellulose was enhanced, which provided precursors for humus synthesis. The key bacteria for humus formation and organic matter transformation were identified using random forests. These bacteria showed growth advantage with the addition of amino acids. The results showed that exogenous amino acids tended to transform organic matter and synthesize humus. Variance partitioning analysis confirmed that the bacterial community was the driving force of humus synthesis. These results were further verified by the structural equation model. These findings provided new ideas and understanding for straw waste composting.

Identifying driving factors of humic acid formation during rice straw composting based on Fenton pretreatment with bacterial inoculation

The aims of this study were to identify the driving factors of humic acid (HA) during rice straw composting based on Fenton pretreatment with bacterial inoculation. Rice straw was pretreated by Fenton reactions and then inoculated during composting, which was set up CK (control), FeW (Fenton pretreatment) and FeWI (Fenton pretreatment + functional bacterial agents). Results indicated that Fenton pretreatment and inoculation of functional bacteria increased the concentration of HA components, which was due to that bacterial composition was changed and bacterial diversity was decreased. Moreover, Fenton pretreatment and inoculation of functional bacteria increased the bacterial amounts of shikimic acid metabolism genes and the correlation between HA components and shikimic acid metabolism genes. Therefore, the functional bacteria were core driving factors, and NH₄^--N, pH, cellulose and bacterial diversity as key environmental factors to promote the formation of HA components.

Role of Bacillus inoculation in rice straw composting and bacterial community stability after inoculation: Unite resistance or individual collapse

Bacillus is the classic inoculant in rice straw composting. However, there has been no in-depth study of the mechanism promoting the degradation of lignocellulose and the change of indigenous bacterial communities after Bacillus inoculation. Moreover, the stability of bacterial communities is a significant challenge in achieving the efficacy of inoculation. In this study, the ecological succession and yield-resource acquisition-stress tolerance (Y-A-S) framework were combined with Redundancy analysis (RDA) and changes in relative abundance, Bacillus was found to be a pioneer bacterium that adopts a resource acquisition-stress tolerance strategy. The structural equation model (SEM) revealed that in addition to exerting a degradation effect, Bacillus inoculation could also indirectly affect lignocellulose degradation by changing the bacterial community. Random forest model and network analysis indicated a change in bacterial communities after inoculation, and bacteria with more complex relationships and weaker decomposition ability were key to the stability of bacterial communities.

Continuous insulation strategy of organic waste composting in cold region: Based on cold-adapted consortium

Compost is a self-heating process for organic waste. Microbes are the main executors in composting process. However, due to low temperature in winter and low efficiency of composting, a lot of heat is lost in composting. In this study, taking-out and feed-batch composting method (TFC) can supplement nutrition and improve composting microenvironment. Compared with NC, the amount of carbohydrates, protein and fat decomposed by TFC increase by 56.8%, 237% and 122%, respectively, in the composting start-up period (0-100 h). Structure and function of microbial community have changed due to stimulation of cold-adapted consortium. In addition, this study shows that core bacteria stimulate cooperation among different bacteria in the organic components metabolism networks. Finally, based on the important role of cold-adapted consortium, the sustainable heating strategy of composting system is put forward, which converts organic wastes into released heat for daily heating and hot water preparation, leading role of cold-adapted consortium.

The process of biotransformation can produce insect protein and promote the effective inactivation of heavy metals

An experiment was performed to study the inactivation effect of aerobic composting on heavy metals in maggot, pig and chicken manures. After composting, Cu mainly occurred in the oxidizable (OXI) fraction with a percentage distribution above 54%. Zn and Cd mainly existed in the bioavailable factor (BF), which has strong activity, with percentage distributions greater than 88.3% and 82.7%, respectively. Cr and Pb mainly existed in the stable residual (RES) fraction with a percentage distribution of approximately 50%. The aerobic composting process had a clear inactivation effect on heavy metals. For maggot manure compost in particular, the inactivation effects of Cu, Cr, Zn, Cd, and Pb were very good throughout the composting process, and the inactivation effect of Pb reached 54.42%. In addition, the process of biotransformation by housefly maggots promoted the conversion of fulvic acid (FA) to humic acid (HA) in pig manure, and the final increase in HA/FA after maggot manure composting was the largest among the different types of manure and beneficial to the inactivation of heavy metals. Compounds containing -CH₃ and -CH₂ groups were reduced, and aromatic structures were enhanced. Moreover, a maggot yield equivalent to 13.2% of the fresh pig manure was achieved during the process of biotransformation. The correlation analysis results showed that moisture content was an important factor affecting the inactivation rates of heavy metals in the three manure composts. Our results highlight that the process of biotransformation by housefly maggots can promote composting maturity and the inactivation of heavy metals, and produce a large amount of insect protein, yielding beneficial ecological and economic benefits.

Heavy metals passivation driven by the interaction of organic fractions and functional bacteria during biochar/montmorillonite-amended composting

The aim of this study was to identify critical driving factors and pathways of mitigating heavy metals (HM) bioavailability during biochar/montmorillonite-amended composting: emphasize on the interaction effect between organic constituents and functional bacteria. Organic components, such as humus (HS), humic (HA) and fulvic acid (FA) and dissolved organic carbon (DOC), exhibited indivisible links with Cu and Zn speciation, which confirmed their vital roles on deactivating Cu and Zn. Network analysis indicated that biochar/montmorillonite obviously increased the diversity of Cu resistant/actor and Zn actor bacteria, which aided in HM passivation. Although multiple pathways were involved in regulating Cu/Zn passivation, the interaction of bacteria and organic constituents was the most critical driving factor. Given that, promoting potential HM resistant/actor bacteria utilizing and transforming low-humification organic fractions coupling with elevating high-humification constituents were the optimal pathway. This study is helpful to practical application of biochar/montmorillonite to inactivate HM for industrial composting.

The key bacteria as the "Activator" promotes the rapid degradation of organic compounds during the start-up of low-temperature compost

During composting of chicken manure, the degradation of organic compounds is a key factor affecting the fate of chicken manure in the low temperature environment. Here, we studied the changes of main organic compounds, including carbohydrates, proteins and lipids and the role of key bacteria in composted at 10 °C. The degradation rates of total sugar and protein in inoculation group were 41.11% and 47.63% respectively, which were related to the activities of carbohydrate related enzymes. The key bacteria from composting have better degradation of organic compounds capacities than others, and improve the enzyme activity. Cluster heatmap verified that the microbial community and enzyme activity were the primary driving factors of organic compounds degradation. Thus, the co-regulation of key microbial and enzyme activity made it possible to promote degradation of organic compounds drastically by microbial metabolism. These above findings are beneficial to improving the utilization of livestock manure in cold areas.

Untangling the response of fungal community structure, composition and function in soil aggregate fractions to food waste compost addition

Soil fungi are key drivers in regulating the ecosystem function, playing a vital role in protecting the plant from phytopathogens and other biotic and abiotic pressures. However, the potential impact of compost addition and soil aggregate size on the fungal community and functional ecological guild remains uncertain. This study investigated the structure, composition, and function of soil fungal communities across aggregate fractions under food waste compost addition using Miseq sequencing and FUNGuild. Compost addition exerted a negative impact on fungal α-diversity, and shifted the structure and changed the composition of fungal community. Compost addition rates exhibited more contributions to fungal α-diversity variations (R = 0.609, 0.895, and 0.501 for Sobs, Shannon, and Chao indices, respectively, P = 0.001) and the separation of community structure than soil aggregate size (R = 0.952, P = 0.001). Biomarkers, including Chaetomiaceae, Ascobolaceae, and Sordariomycete, displayed significant superiority in compost-added soils, whereas the populations of Nectriaceae and Clavicipitaceae were significantly decreased. The relative abundances of animal and plant pathogens were significantly decreased, whereas that of saprotrophs were increased. The abundances of pathogens correlated positively with pH and negatively with nutrients (soil organic matter, dissolved organic carbon, total nitrigen, NH₄⁺, and NO₃^-), whereas those of saprotrophs showed an opposite trend. The dose of compost was the major driver for fungal functional guild variation, whereas carbon and nitrogen source exhibited more contributions to function variation than pH value. These results provide a reference for sustainable ecological agriculture by applying compost rationally under the conditions of soil health and agricultural performance.

The "quality" and "quantity" of microbial species drive the degradation of cellulose during composting

The aim of this study was to explore the contribution of microbial community to cellulose degradation during cellulosic wastes composting. Three raw materials with different cellulose content were employed, including rice straws (RS), leaves (L) and mushroom dregs (MD). The cellulose degraded by 92.09%, 56.68% and 40.03% during RS, L and MD composting, respectively, which could be explained by cellulases activity. Besides, each cellulase were only linked to a specific group of bacteria, thus cellulose degradation needed the cooperation of various microorganisms. Ultimately, structural equation models verified that the richness and evenness of microbial community were the primary driving factors of cellulose degradation. The richness symbolized microbial functionality, which was equivalent to the "quality" of microbial species. The evenness symbolized the scope of function, which was equivalent to the "quantity". Therefore, the "quality" and "quantity" of microbial species drove cellulose degradation during RS, L and MD composting.

Oxytetracycline stress reconstruct the core microbial community related to nitrogen transformation during composting

This study investigated oxytetracycline (OTC) effects on nitrogen (N) transformation and bacterial community diversity during chicken manure composting. The addition of OTC inhibited nitrifying bacteria, resulted in a decrease in the transformation of NH₄⁺-N to NO₃^--N during composting, and affected in the order T3 (32.76%) > T2 (28.76%) > T1 (17.02%) > CK. The OTC could act as an inhibitor against core microbial growth, leading to a delay effect during composting. 16S rRNA sequencing was employed for the functional prediction, and results indicated the bacterial community related to N transformation reconstructed under OTC stress. The core microorganisms were changed after OTC addition, with the emergence of Bacillus and Thermobifida, which could inhibit the N transformation by network analysis. Therefore, core microorganisms could be regulated to reduce the negative of OTC impacts on N transformation and thus reduce N loss during composting.