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For: Chen RJ, Lu MY, Williamson DFK, Chen TY, Lipkova J, Noor Z, Shaban M, Shady M, Williams M, Joo B, Mahmood F. Pan-cancer integrative histology-genomic analysis via multimodal deep learning. Cancer Cell 2022;40:865-878.e6. [PMID: 35944502 PMCID: PMC10397370 DOI: 10.1016/j.ccell.2022.07.004] [Citation(s) in RCA: 178] [Impact Index Per Article: 59.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Revised: 10/08/2021] [Accepted: 07/11/2022] [Indexed: 02/07/2023]
Number Cited by Other Article(s)
1
Angeloni M, Rizzi D, Schoen S, Caputo A, Merolla F, Hartmann A, Ferrazzi F, Fraggetta F. Closing the gap in the clinical adoption of computational pathology: a standardized, open-source framework to integrate deep-learning models into the laboratory information system. Genome Med 2025;17:60. [PMID: 40420213 DOI: 10.1186/s13073-025-01484-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2024] [Accepted: 05/06/2025] [Indexed: 05/28/2025]  Open
2
Yeghaian M, Bodalal Z, van den Broek D, Haanen JBAG, Beets-Tan RGH, Trebeschi S, van Gerven MAJ. Multimodal integration of longitudinal noninvasive diagnostics for survival prediction in immunotherapy using deep learning. J Am Med Inform Assoc 2025:ocaf074. [PMID: 40418276 DOI: 10.1093/jamia/ocaf074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2024] [Revised: 01/17/2025] [Accepted: 04/29/2025] [Indexed: 05/27/2025]  Open
3
Baheti B, Rai S, Innani S, Mehdiratta G, Bell WR, Guntuku SC, Nasrallah MP, Bakas S. Multimodal Explainable Artificial Intelligence for Prognostic Stratification of Glioblastoma Patients. Mod Pathol 2025:100797. [PMID: 40419087 DOI: 10.1016/j.modpat.2025.100797] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2024] [Revised: 04/09/2025] [Accepted: 05/13/2025] [Indexed: 05/28/2025]
4
Schuurmans M, Saha A, Alves N, Vendittelli P, Yakar D, Sabroso-Lasa S, Xue N, Malats N, Huisman H, Hermans J, Litjens G. End-to-end prognostication in pancreatic cancer by multimodal deep learning: a retrospective, multicenter study. Eur Radiol 2025:10.1007/s00330-025-11694-y. [PMID: 40410330 DOI: 10.1007/s00330-025-11694-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2024] [Revised: 03/26/2025] [Accepted: 04/21/2025] [Indexed: 05/25/2025]
5
Tian R, Hou F, Zhang H, Yu G, Yang P, Li J, Yuan T, Chen X, Chen Y, Hao Y, Yao Y, Zhao H, Yu P, Fang H, Song L, Li A, Liu Z, Lv H, Yu D, Cheng H, Mao N, Song X. Multimodal fusion model for prognostic prediction and radiotherapy response assessment in head and neck squamous cell carcinoma. NPJ Digit Med 2025;8:302. [PMID: 40410262 PMCID: PMC12102330 DOI: 10.1038/s41746-025-01712-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2024] [Accepted: 05/10/2025] [Indexed: 05/25/2025]  Open
6
Yi X, Yu X, Li C, Li J, Cao H, Lu Q, Li J, Hou J. Deep learning radiopathomics based on pretreatment MRI and whole slide images for predicting over survival in locally advanced nasopharyngeal carcinoma. Radiother Oncol 2025:110949. [PMID: 40409367 DOI: 10.1016/j.radonc.2025.110949] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2024] [Revised: 04/27/2025] [Accepted: 05/19/2025] [Indexed: 05/25/2025]
7
Chaudhary P, Singha B, Abdel-Hafiz HA, Velegraki M, Sundi D, Satturwar S, Parwani AV, Grivennikov SI, You S, Goodridge HS, Ma Q, Chang Y, Ma A, Zheng B, Theodorescu D, Li Z, Li X. Sex differences in bladder cancer: understanding biological and clinical implications. Biol Sex Differ 2025;16:31. [PMID: 40361239 PMCID: PMC12070554 DOI: 10.1186/s13293-025-00715-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/03/2025] [Accepted: 04/30/2025] [Indexed: 05/15/2025]  Open
8
Zhang T, Ding R, Luong KD, Hsu W. Evaluating an information theoretic approach for selecting multimodal data fusion methods. J Biomed Inform 2025;167:104833. [PMID: 40354908 DOI: 10.1016/j.jbi.2025.104833] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2024] [Revised: 03/17/2025] [Accepted: 04/20/2025] [Indexed: 05/14/2025]
9
Li T, Zhou X, Xue J, Zeng L, Zhu Q, Wang R, Yu H, Xia J. Cross-modal alignment and contrastive learning for enhanced cancer survival prediction. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2025;263:108633. [PMID: 39961170 DOI: 10.1016/j.cmpb.2025.108633] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2024] [Revised: 12/28/2024] [Accepted: 01/30/2025] [Indexed: 03/14/2025]
10
Lin Q, Guan S, Peng M, Zhang K, Zhang H, Mo T, Yu H. Comprehensive analysis of SQOR involvement in ferroptosis resistance of pancreatic ductal adenocarcinoma in hypoxic environments. Front Immunol 2025;16:1513589. [PMID: 40375994 PMCID: PMC12078260 DOI: 10.3389/fimmu.2025.1513589] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2024] [Accepted: 04/07/2025] [Indexed: 05/18/2025]  Open
11
Gao F, Ding J, Gai B, Cai D, Hu C, Wang F, He R, Liu J, Li Y, Wu X. Interpretable Multimodal Fusion Model for Bridged Histology and Genomics Survival Prediction in Pan-Cancer. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2025;12:e2407060. [PMID: 40051298 PMCID: PMC12061278 DOI: 10.1002/advs.202407060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/24/2024] [Revised: 01/19/2025] [Indexed: 05/10/2025]
12
Nunes JD, Montezuma D, Oliveira D, Pereira T, Zlobec I, Pinto IM, Cardoso JS. Bridging Domain Gaps in Computational Pathology: A Comparative Study of Adaptation Strategies. SENSORS (BASEL, SWITZERLAND) 2025;25:2856. [PMID: 40363293 PMCID: PMC12074174 DOI: 10.3390/s25092856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/25/2025] [Revised: 04/19/2025] [Accepted: 04/29/2025] [Indexed: 05/15/2025]
13
Lin H, Hua J, Gong Z, Chen M, Qiu B, Wu Y, He W, Wang Y, Feng Z, Liang Y, Long W, Li R, Kuang Q, Chen Y, Lu J, Luo S, Zhao W, Yan L, Chen X, Shi Z, Xu Z, Mo Z, Liu E, Han C, Cui Y, Yang X, Chen X, Liu J, Pan X, Madabhushi A, Lu C, Liu Z. Multimodal radiopathological integration for prognosis and prediction of adjuvant chemotherapy benefit in resectable lung adenocarcinoma: A multicentre study. Cancer Lett 2025;616:217557. [PMID: 39954935 DOI: 10.1016/j.canlet.2025.217557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2024] [Revised: 02/06/2025] [Accepted: 02/12/2025] [Indexed: 02/17/2025]
14
Marra A, Morganti S, Pareja F, Campanella G, Bibeau F, Fuchs T, Loda M, Parwani A, Scarpa A, Reis-Filho JS, Curigliano G, Marchiò C, Kather JN. Artificial intelligence entering the pathology arena in oncology: current applications and future perspectives. Ann Oncol 2025:S0923-7534(25)00112-7. [PMID: 40307127 DOI: 10.1016/j.annonc.2025.03.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2024] [Revised: 02/19/2025] [Accepted: 03/07/2025] [Indexed: 05/02/2025]  Open
15
Fan X, He Z, Guo J, Bu D, Han D, Qu X, Li Q, Cheng S, Han A, Guo J. Leveraging TME features and multi-omics data with an advanced deep learning framework for improved Cancer survival prediction. Sci Rep 2025;15:14282. [PMID: 40275021 PMCID: PMC12022115 DOI: 10.1038/s41598-025-98565-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2025] [Accepted: 04/14/2025] [Indexed: 04/26/2025]  Open
16
Bi Q, Ai C, Qu L, Meng Q, Wang Q, Yang J, Zhou A, Shi W, Lei Y, Wu Y, Liu Y, Li H, Qiang J. Foundation model-driven multimodal prognostic prediction in patients undergoing primary surgery for high-grade serous ovarian cancer. NPJ Precis Oncol 2025;9:114. [PMID: 40254649 PMCID: PMC12009961 DOI: 10.1038/s41698-025-00900-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2024] [Accepted: 04/04/2025] [Indexed: 04/22/2025]  Open
17
Peng S, Long M, Chen Q, Yin Z, Zeng C, Zhang W, Wen Q, Zhang X, Ke W, Wu Y. Perspectives on cancer therapy-synthetic lethal precision medicine strategies, molecular mechanisms, therapeutic targets and current technical challenges. Cell Death Discov 2025;11:179. [PMID: 40240755 PMCID: PMC12003663 DOI: 10.1038/s41420-025-02418-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2024] [Revised: 02/27/2025] [Accepted: 03/19/2025] [Indexed: 04/18/2025]  Open
18
Yates J, Van Allen EM. New horizons at the interface of artificial intelligence and translational cancer research. Cancer Cell 2025;43:708-727. [PMID: 40233719 PMCID: PMC12007700 DOI: 10.1016/j.ccell.2025.03.018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/24/2025] [Revised: 03/04/2025] [Accepted: 03/12/2025] [Indexed: 04/17/2025]
19
Wu Y, Liu Y, Yang Y, Yao MS, Yang W, Shi X, Yang L, Li D, Liu Y, Yin S, Lei C, Zhang M, Gee JC, Yang X, Wei W, Gu S. A concept-based interpretable model for the diagnosis of choroid neoplasias using multimodal data. Nat Commun 2025;16:3504. [PMID: 40223097 PMCID: PMC11994757 DOI: 10.1038/s41467-025-58801-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2024] [Accepted: 04/02/2025] [Indexed: 04/15/2025]  Open
20
Shi J, Sun D, Jiang Z, Du J, Wang W, Zheng Y, Wu H. Weakly supervised multi-modal contrastive learning framework for predicting the HER2 scores in breast cancer. Comput Med Imaging Graph 2025;121:102502. [PMID: 39919535 DOI: 10.1016/j.compmedimag.2025.102502] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Revised: 08/22/2024] [Accepted: 01/25/2025] [Indexed: 02/09/2025]
21
Wu Z, Ouyang S, Gao J, Hu J, Guo Q, Liu D, Ren K. Role of Radiomics-based Multiomics Panel in the Microenvironment and Prognosis of Hepatocellular Carcinoma. Acad Radiol 2025;32:1961-1970. [PMID: 39765431 DOI: 10.1016/j.acra.2024.12.039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2024] [Revised: 11/20/2024] [Accepted: 12/18/2024] [Indexed: 04/11/2025]
22
Tiwari A, Ghose A, Hasanova M, Faria SS, Mohapatra S, Adeleke S, Boussios S. The current landscape of artificial intelligence in computational histopathology for cancer diagnosis. Discov Oncol 2025;16:438. [PMID: 40167870 PMCID: PMC11961855 DOI: 10.1007/s12672-025-02212-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/15/2024] [Accepted: 03/24/2025] [Indexed: 04/02/2025]  Open
23
Chen J, Liu P, Chen C, Su Y, Zuo E, Li M, Wang J, Yan Z, Chen X, Chen C, Lv X. TDMFS: Tucker decomposition multimodal fusion model for pan-cancer survival prediction. Artif Intell Med 2025;162:103099. [PMID: 40037056 DOI: 10.1016/j.artmed.2025.103099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Revised: 11/05/2024] [Accepted: 02/23/2025] [Indexed: 03/06/2025]
24
Finzel B. Current methods in explainable artificial intelligence and future prospects for integrative physiology. Pflugers Arch 2025;477:513-529. [PMID: 39994035 PMCID: PMC11958383 DOI: 10.1007/s00424-025-03067-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2024] [Revised: 01/14/2025] [Accepted: 01/15/2025] [Indexed: 02/26/2025]
25
Llinas-Bertran A, Butjosa-Espín M, Barberi V, Seoane JA. Multimodal data integration in early-stage breast cancer. Breast 2025;80:103892. [PMID: 39922065 PMCID: PMC11973824 DOI: 10.1016/j.breast.2025.103892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2024] [Revised: 12/13/2024] [Accepted: 01/27/2025] [Indexed: 02/10/2025]  Open
26
Li J, Zhang Y, Shu W, Feng X, Wang Y, Yan P, Li X, Sha C, He M. M4: Multi-proxy multi-gate mixture of experts network for multiple instance learning in histopathology image analysis. Med Image Anal 2025;103:103561. [PMID: 40198973 DOI: 10.1016/j.media.2025.103561] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2024] [Revised: 02/26/2025] [Accepted: 03/23/2025] [Indexed: 04/10/2025]
27
Hanna MG, Pantanowitz L, Dash R, Harrison JH, Deebajah M, Pantanowitz J, Rashidi HH. Future of Artificial Intelligence-Machine Learning Trends in Pathology and Medicine. Mod Pathol 2025;38:100705. [PMID: 39761872 DOI: 10.1016/j.modpat.2025.100705] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2024] [Revised: 12/19/2024] [Accepted: 01/01/2025] [Indexed: 02/07/2025]
28
Hu Y, Sirinukunwattana K, Li B, Gaitskell K, Domingo E, Bonnaffé W, Wojciechowska M, Wood R, Alham NK, Malacrino S, Woodcock DJ, Verrill C, Ahmed A, Rittscher J. Self-interactive learning: Fusion and evolution of multi-scale histomorphology features for molecular traits prediction in computational pathology. Med Image Anal 2025;101:103437. [PMID: 39798526 DOI: 10.1016/j.media.2024.103437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2024] [Revised: 10/06/2024] [Accepted: 12/09/2024] [Indexed: 01/15/2025]
29
Zhou S, Xie Y, Feng X, Li Y, Shen L, Chen Y. Artificial intelligence in gastrointestinal cancer research: Image learning advances and applications. Cancer Lett 2025;614:217555. [PMID: 39952597 DOI: 10.1016/j.canlet.2025.217555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2024] [Revised: 01/31/2025] [Accepted: 02/11/2025] [Indexed: 02/17/2025]
30
Huang X, Hong L, Lv Y, Li K, Zhang Z, Deng J, Shen L. Peptide hydrogel platform encapsulating manganese ions and high-density lipoprotein nanoparticle-mimicking nanovaccines for the prevention and treatment of gastric cancer. J Transl Med 2025;23:371. [PMID: 40134018 PMCID: PMC11938608 DOI: 10.1186/s12967-025-06088-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2024] [Accepted: 01/07/2025] [Indexed: 03/27/2025]  Open
31
Cen X, Lan Y, Zou J, Chen R, Hu C, Tong Y, Zhang C, Chen J, Wang Y, Zhou R, He W, Lu T, Dubee F, Jovic D, Dong W, Gao Q, Ma M, Lu Y, Xue Y, Cheng X, Li Y, Yang H. Pan-cancer analysis shapes the understanding of cancer biology and medicine. Cancer Commun (Lond) 2025. [PMID: 40120098 DOI: 10.1002/cac2.70008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2024] [Revised: 02/13/2025] [Accepted: 02/16/2025] [Indexed: 03/25/2025]  Open
32
Bai Z, Osman M, Brendel M, Tangen CM, Flaig TW, Thompson IM, Plets M, Scott Lucia M, Theodorescu D, Gustafson D, Daneshmand S, Meeks JJ, Choi W, Dinney CPN, Elemento O, Lerner SP, McConkey DJ, Faltas BM, Wang F. Predicting response to neoadjuvant chemotherapy in muscle-invasive bladder cancer via interpretable multimodal deep learning. NPJ Digit Med 2025;8:174. [PMID: 40121304 PMCID: PMC11929913 DOI: 10.1038/s41746-025-01560-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2024] [Accepted: 03/11/2025] [Indexed: 03/25/2025]  Open
33
Li R, Li J, Wang Y, Liu X, Xu W, Sun R, Xue B, Zhang X, Ai Y, Du Y, Jiang J. The artificial intelligence revolution in gastric cancer management: clinical applications. Cancer Cell Int 2025;25:111. [PMID: 40119433 PMCID: PMC11929235 DOI: 10.1186/s12935-025-03756-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2024] [Accepted: 03/18/2025] [Indexed: 03/24/2025]  Open
34
Peng Z, Ayad MA, Jing Y, Chou T, Cooper LA, Goldstein JA. Benchmarking pathology foundation models for non-neoplastic pathology in the placenta. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2025:2025.03.19.25324282. [PMID: 40166578 PMCID: PMC11957174 DOI: 10.1101/2025.03.19.25324282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 04/02/2025]
35
Zhang H, Chen L, Li L, Liu Y, Das B, Zhai S, Tan J, Jiang Y, Turco S, Yao Y, Frishman D. Prediction and analysis of tumor infiltrating lymphocytes across 28 cancers by TILScout using deep learning. NPJ Precis Oncol 2025;9:76. [PMID: 40108446 PMCID: PMC11923303 DOI: 10.1038/s41698-025-00866-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2024] [Accepted: 03/06/2025] [Indexed: 03/22/2025]  Open
36
Lin Q, Chen C, Li K, Cao W, Wang R, Fichera A, Han S, Zou X, Li T, Zou P, Wang H, Ye Z, Yuan Z. A deep-learning model to predict the completeness of cytoreductive surgery in colorectal cancer with peritoneal metastasis☆. EUROPEAN JOURNAL OF SURGICAL ONCOLOGY 2025;51:109760. [PMID: 40174333 DOI: 10.1016/j.ejso.2025.109760] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2024] [Revised: 02/26/2025] [Accepted: 03/09/2025] [Indexed: 04/04/2025]
37
Liu B, Polack M, Coudray N, Claudio Quiros A, Sakellaropoulos T, Le H, Karimkhan A, Crobach ASLP, van Krieken JHJM, Yuan K, Tollenaar RAEM, Mesker WE, Tsirigos A. Self-supervised learning reveals clinically relevant histomorphological patterns for therapeutic strategies in colon cancer. Nat Commun 2025;16:2328. [PMID: 40057490 PMCID: PMC11890774 DOI: 10.1038/s41467-025-57541-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Accepted: 02/26/2025] [Indexed: 05/13/2025]  Open
38
Lin H, Hua J, Wang Y, Chen M, Liang Y, Yan L, Zhao W, Luo S, Hong D, Chen X, Pan X, Liu J, Liu Z. Prognostic and predictive values of a multimodal nomogram incorporating tumor and peritumor morphology with immune status in resectable lung adenocarcinoma. J Immunother Cancer 2025;13:e010723. [PMID: 40050046 PMCID: PMC11887283 DOI: 10.1136/jitc-2024-010723] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2024] [Accepted: 02/24/2025] [Indexed: 03/09/2025]  Open
39
Song J, Hao Y, Zhao S, Zhang P, Feng Q, Dai Q, Duan X. Dual-stream cross-modal fusion alignment network for survival analysis. Brief Bioinform 2025;26:bbaf103. [PMID: 40116656 PMCID: PMC11926988 DOI: 10.1093/bib/bbaf103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2024] [Revised: 02/04/2025] [Accepted: 02/21/2025] [Indexed: 03/23/2025]  Open
40
Hu Y, Li X, Yi Y, Huang Y, Wang G, Wang D. Deep learning-driven survival prediction in pan-cancer studies by integrating multimodal histology-genomic data. Brief Bioinform 2025;26:bbaf121. [PMID: 40116660 PMCID: PMC11926983 DOI: 10.1093/bib/bbaf121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2024] [Revised: 02/10/2025] [Accepted: 02/28/2025] [Indexed: 03/23/2025]  Open
41
Boehm KM, El Nahhas OSM, Marra A, Waters M, Jee J, Braunstein L, Schultz N, Selenica P, Wen HY, Weigelt B, Paul ED, Cekan P, Erber R, Loeffler CML, Guerini-Rocco E, Fusco N, Frascarelli C, Mane E, Munzone E, Dellapasqua S, Zagami P, Curigliano G, Razavi P, Reis-Filho JS, Pareja F, Chandarlapaty S, Shah SP, Kather JN. Multimodal histopathologic models stratify hormone receptor-positive early breast cancer. Nat Commun 2025;16:2106. [PMID: 40025017 PMCID: PMC11873197 DOI: 10.1038/s41467-025-57283-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2024] [Accepted: 02/13/2025] [Indexed: 03/04/2025]  Open
42
Ligero M, El Nahhas OSM, Aldea M, Kather JN. Artificial intelligence-based biomarkers for treatment decisions in oncology. Trends Cancer 2025;11:232-244. [PMID: 39814650 DOI: 10.1016/j.trecan.2024.12.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Revised: 11/29/2024] [Accepted: 12/02/2024] [Indexed: 01/18/2025]
43
Carrillo-Perez F, Pizurica M, Zheng Y, Nandi TN, Madduri R, Shen J, Gevaert O. Generation of synthetic whole-slide image tiles of tumours from RNA-sequencing data via cascaded diffusion models. Nat Biomed Eng 2025;9:320-332. [PMID: 38514775 DOI: 10.1038/s41551-024-01193-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2022] [Accepted: 02/29/2024] [Indexed: 03/23/2024]
44
Vong CK, Wang A, Dragunow M, Park TIH, Shim V. Brain tumour histopathology through the lens of deep learning: A systematic review. Comput Biol Med 2025;186:109642. [PMID: 39787663 DOI: 10.1016/j.compbiomed.2024.109642] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Revised: 12/26/2024] [Accepted: 12/27/2024] [Indexed: 01/12/2025]
45
Chang TG, Park S, Schäffer AA, Jiang P, Ruppin E. Hallmarks of artificial intelligence contributions to precision oncology. NATURE CANCER 2025;6:417-431. [PMID: 40055572 PMCID: PMC11957836 DOI: 10.1038/s43018-025-00917-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2024] [Accepted: 01/21/2025] [Indexed: 03/29/2025]
46
Pan X, Wei C, Su J, Fang M, Lin Q, Qin Y, Gao J, Zhao J, Zhao H, Liu F. A comprehensive analysis of the prognostic value, expression characteristics and immune correlation of MKI67 in cancers. Front Immunol 2025;16:1531708. [PMID: 40070823 PMCID: PMC11894575 DOI: 10.3389/fimmu.2025.1531708] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2024] [Accepted: 02/03/2025] [Indexed: 03/14/2025]  Open
47
Zhang P, Gao C, Zhang Z, Yuan Z, Zhang Q, Zhang P, Du S, Zhou W, Li Y, Li S. Systematic inference of super-resolution cell spatial profiles from histology images. Nat Commun 2025;16:1838. [PMID: 39984438 PMCID: PMC11845739 DOI: 10.1038/s41467-025-57072-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2024] [Accepted: 02/07/2025] [Indexed: 02/23/2025]  Open
48
Launet L, Colomer A, Mosquera-Zamudio A, Monteagudo C, Naranjo V. The puzzling Spitz tumours: is artificial intelligence the key to their understanding? Histopathology 2025. [PMID: 39976082 DOI: 10.1111/his.15428] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/21/2025]
49
Zhang H, Yang F, Xu Y, Zhao S, Jiang YZ, Shao ZM, Xiao Y. Multimodal integration using a machine learning approach facilitates risk stratification in HR+/HER2- breast cancer. Cell Rep Med 2025;6:101924. [PMID: 39848244 PMCID: PMC11866502 DOI: 10.1016/j.xcrm.2024.101924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Revised: 08/11/2024] [Accepted: 12/27/2024] [Indexed: 01/25/2025]
50
Julian DR, Bahramy A, Neal M, Pearce TM, Kofler J. Current Advancements in Digital Neuropathology and Machine Learning for the Study of Neurodegenerative Diseases. THE AMERICAN JOURNAL OF PATHOLOGY 2025:S0002-9440(25)00046-X. [PMID: 39954963 DOI: 10.1016/j.ajpath.2024.12.018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2024] [Revised: 12/16/2024] [Accepted: 12/30/2024] [Indexed: 02/17/2025]
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