The hydrogen bond

The Influence of Temperature on the Retention of Methanol by AOT Reverse Micelles: A Molecular Dynamics and First-Principles Study

Reverse micelles (RMs) are versatile self-assembled structures with wide-ranging applications. This study investigates the retention of methanol within AOT-based RMs in isooctane, focusing on the influence of temperature and methanol's interaction sites within the RM structure. Using molecular dynamics simulations at 298.15, 303.15, 308.15, and 313.15 K, we demonstrate that AOT RMs, ranging in size from 15 to 62 AOT molecules, effectively retain methanol, with retention increasing at higher temperatures. Our findings, supported by both molecular dynamics and ab initio calculations, reveal that methanol retention primarily occurs through hydrogen bonding between the methanol hydroxyl group and the oxygen atoms of the AOT polar headgroup. Furthermore, our analysis confirms the stability of RMs with varying water loads, including dry reverse micelles (dRMs), corroborating previous experimental and theoretical findings. Importantly, we show that while methanol predominantly resides near the polar heads at the core surface, the possibility of methanol penetrating the core, even in dRMs, cannot be excluded. This research provides valuable insights into methanol's behavior within AOT RMs, paving the way for further investigation into the formation and properties of these systems in the presence of methanol.

Density functional benchmark for quadruple hydrogen bonds

Hydrogen bonding is an important non-covalent interaction that plays a major role in molecular self-organization and supramolecular structures. It can be described accurately with ab initio quantum chemical wave function methods, which become computationally expensive for large molecular assemblies. Density functional theory (DFT) offers a better balance between accuracy and computational cost, and can be routinely applied to large systems. A large number of density functional approximations (DFAs) has been developed, but their accuracy depend on the application, necessitating benchmark studies to guide their selection for use in applications. Some of us have recently determined highly accurate hydrogen bonding energies of 14 quadruply hydrogen-bonded dimers by extrapolating coupled-cluster energies to the complete basis set limit as well as extrapolating electron correlation contributions with a continued-fraction approach [U. Ahmed et al., Phys. Chem. Chem. Phys., 2024, 26, 24470-24476]. In this work, we study the reproduction of these bonding energies at the DFT level using 152 DFAs. The top ten density functional approximations are composed of eight variants of the Berkeley functionals both with and without dispersion corrections, and two Minnesota 2011 functionals augmented with a further dispersion correction. We find the B97M-V functional with the non-local correlation functional replaced by an empirical D3BJ dispersion correction to be the best DFA, while changes to the dispersion part in other Berkeley functionals lead to poorer performance in our study.

Red- and Blue-shifting Hydrogen Bonds of Cyclic Ketones of Varying Ring Sizes with HF and CHF3: Comparison of the Results of B3LYP, O3LYP, and M06-2X Functionals

The density functionals B3LYP, O3LYP, and M06-2X are employed to characterize and compare the properties of hydrogen bonds (HBs) between cyclic ketones of increasing ring size (cyclopropanone to cyclohexanone) and HF and CHF3. Herein, HF forms the classical red-shifting HBs whereas CHF3 forms the unconventional blue-shifting HBs with the cyclic ketones. The red-shifting FH···O HBs are found to be characterized by predominantly shared-shell interaction as contrary to the closed-shell (electrostatic) interaction governing the blue-shifting F3CH···O HBs. This is seen to be consistent with the dominance of hyperconjugative (n ( O ) → σ * ( HF ) $n \left(\right. \text{O} \left.\right) \rightarrow \left(\sigma\right)^{\star} \left(\right. \text{HF} \left.\right)$ charge transfer) effect over the rehybridization effect underlying the redshifting FH···O HBs, while the reverse situation prevails for blueshifting F3CH···O HBs. The geometry and electronic structure parameters of the cyclic ketones (HB acceptors) show that the polarity of the carbonyl (CO) moiety can be correlated with the ring size to rationalize the electrostatic stabilization of the HBs. The performance of the three density functionals is compared for characterizing the HBs in combination with the triple-ζ basis set 6-311++g(d,p).

H-Bonds in Carbon Quantum Dot-anchored C3N5 to Boost Proton-Coupled Electron Transfer for Piezoelectric-Driven Hydrogen Peroxide Synthesis under Ambient Conditions

Tuning proton-coupled electron transfer (PCET) is a promising strategy to boost the oxygen reduction reaction (ORR) for hydrogen peroxide (H2O2) synthesis, but the slow transmission rate of protons and electrons to active sites remains a significant bottleneck. To address this, we developed an H-bond-driven PCET process based on carbon quantum dot-anchored C3N5 (CQDs-C3N5) for piezo-catalytic H2O2 synthesis. CQDs-C3N5 exhibited a remarkable piezo-catalytic synthesis rate of 5025 μmol g-1 h-1 under ambient conditions, surpassing that of most reported piezoelectric materials. This efficiency is attributed to the intermolecular H-bonds between CQDs and C3N5, which significantly accelerate PCET in the ORR. The piezoelectric-generated charges, from the dipole field of the C3N5 plane, and protons in water, were rapidly transferred to the C rings of CQDs via H-bond networks. This process facilitated the adsorption of oxygen onto the C2 sites adjacent to the carboxyl groups of CQDs, which in turn led to the formation of H2O2 through a rapidly protonated, indirect 2e- pathway. Additionally, a piezo-self-Fenton reaction system was constructed for oxytetracycline-rich wastewater purification, with effectively effects on chemical oxygen demand, antibiotic-resistant bacteria and antibiotic-resistant genes degradation, etc. This study highlights the critical role of H-bond networks for tuning PCET in the ORR and provides a comprehensive understanding for the precise control of catalytic reaction kinetics through molecular structural engineering.

Pioneering the Future: Principles, Advances, and Challenges in Organic Electrodes for Aqueous Ammonium-Ion Batteries

Aqueous ammonium-ion (NH4 +) batteries (AAIBs) have recently been considered as attractive alternatives for next-generation large-scale energy storage systems, on account of their cost-effectiveness, nonflammability, less corrosive, small hydrated ionic radius, and rapid NH4 + diffusion kinetics. In addition, the tetrahedral structure of NH4 + exhibits preferential orientation characteristics, resulting in a different electrochemical storage mechanism from spherical charge carriers such as Li+, Na+, and K+. Therefore, unlocking the NH4 +-ion storage mechanisms in host electrode materials is pivotal to advancing the design of high-performance AAIBs. Organic materials, with their customizable, flexible, and stable molecular structures, along with their ease of recycling and disposal, offer tremendous potential. However, the development of cutting-edge organic electrode materials specifically for ammonium-ion storage in AAIBs remains an exciting, yet largely untapped, frontier. This review systematically explores the interaction mechanisms between NH4 + ions and organic electrode materials, such as electrostatic interactions including hydrogen bonding. It also highlights the application of diverse organic electrode materials, such as small molecules, conducting polymers, covalent organic frameworks (COFs), and organic-inorganic hybrids in AAIBs. Lastly, the review addresses the key challenges and future perspectives of organic-material-based AAIBs, aiming to push the boundaries of cutting-edge aqueous energy storage systems.

Exploring the dominant interactions: unveiling the stable structure of theobromine-water complexes through DFT and ab initio investigations

CONTEXT

Solute-solvent interactions are crucial for life processes, as biological reactions primarily take place in liquid environments. Water, owing to its remarkable capacity for hydrogen bonding, plays a pivotal role as a solvent in these biological systems. This study computationally investigates the hydration of theobromine, a molecule with significant therapeutic potential and a favorable safety profile. It focuses on the intermolecular interactions within 1:1 theobromine-water complexes in order to provide a comprehensive identification of the potential interaction sites for water when theobromine is dissolved in it. In addition, the research extends to investigate species with up to three water molecules to explore the potential for cooperative binding phenomena.

METHODS

In this work, we have employed MP2/6-311++G(d,p) and ω B97XD/6-311++G(d,p) levels of theory within Gaussian09 to optimize geometries and calculate the energies of theobromine-water complexes. Eight stationary points have been identified on the 1:1 theobromine-water potential energy surface, with the majority exhibiting dual hydrogen bond motifs and deviations from linearity. The global minimum structure is characterized by the simultaneous presence of O-H-O and N-H-O hydrogen bonds, with interaction energies of 7.78 kcal/mol and 9.29 kcal/mol determined at the MP2/6-311++G(d,p) and ω B97XD/6-311++G(d,p) levels of theory, respectively. Natural bond orbital (NBO) analysis at the MP2/6-311++G(d,p) level has been used to quantify donor-acceptor charges and hyperconjugation energies. A linear correlation between interaction energy, charge density, and bond length elongation has been observed, highlighting the intricate interplay of these key parameters. To investigate cooperative hydrogen bonding, we have modeled complexes with up to three water molecules. Weak interactions have been further characterized using atoms in molecules (AIM) analysis and reduced density gradient (RDG) approach. We have found that increasing the hydration up to two water molecules significantly reduces the tautomerization barrier from 46.09 to 20.47 kcal/mol.

Interplay of Tetrel, Hydrogen, and Halogen Bonds in F3GeOCl and HCN Complexes: A Comprehensive Theoretical Study of Dimers, Trimers, and Tetramers

This study investigates the nature and interplay of noncovalent interactions (NCIs)─tetrel bonds (TB), hydrogen bonds (HB), and halogen bonds (XB)─in molecular assemblies formed between trifluorogermyl hypochlorite (F3GeOCl) and hydrogen cyanide (HCN). Using a combination of high-level computational methods, we explored the geometric, energetic, and electronic properties of dimers, trimers, and tetramers formed in different molar ratios of interacting reagents. Various analyses reveal a significant cooperativity between TB and HB, which mutually reinforce each other, while XB interactions are diminished in the presence of TB and HB. Energy decomposition analysis (EDA) through SAPT and sobEDAw methods identified electrostatic and orbital interactions as key contributors to the stabilization of TB and HB, while dispersion plays a prominent role in XB. A perfect linear correlation was found between interaction energy and charge density at bond critical points (BCPs), underscoring the predictive value of these metrics. These findings shed light on the cooperative nature of NCIs and provide a framework for designing molecular systems in supramolecular chemistry and crystal engineering.

Triel Bonds with Methyl Groups as Electron Donors. A Pentacoordinate Carbon Atom

The triel bond (TrB) formed between Be(CH3)2/Mg(CH3)2 and TrX3 (Tr=B, Al, and Ga; X=H, F, Cl, Br, and I) is investigated via the MP2/aug-cc-pVTZ(PP) quantum chemical protocol. The C atoms of the methyl groups in M(CH3)2 are characterized by a negative electrostatic potential and act as an electron donor in a triel bond with the π-hole above the Tr atom of planar TrX3. The interaction energy spans a wide range between -2 and -69 kcal/mol. Mg(CH3)2 forms a stronger TrB than does Be(CH3)2, which comports with the more negative electrostatic potential on its methyl groups. Some of the complexes involving Mg display a high degree of transfer of the methyl group from Mg to Tr, which is accompanied by an inversion of the bridging methyl and a sizable pyramidalization of the TrX3 unit. The geometries of these complexes have the properties of the long sought pentacoordinate C which has eluded identification and characterization in the past.

Extending Badger's rule. I. The relationship between energy and structure in hydrogen bonds

We derive a new expression for the strength of a hydrogen bond (VHB) in terms of the elongation of the covalent bond of the donor fragment participating in the hydrogen bond (ΔrHB) and the intermolecular coordinates R (separation between the heavy atoms) and θ (deviation of the hydrogen bond from linearity). The expression includes components describing the covalent D-H bond of the hydrogen bond donor via a Morse potential, the Pauli repulsion, and electrostatic interactions between the constituent fragments using a linear expansion of their dipole moment and a quadratic expansion of their polarizability tensor. We fitted the parameters of the model using ab initio electronic structure results for six hydrogen bonded dimers, namely, NH3-NH3, H2O-H2O, HF-HF, H2O-NH3, HF-H2O, and HF-NH3, and validated its performance for extended parts of their potential energy surfaces, resulting in a mean absolute error ranging from 0.07 to 0.31 kcal/mol. The derived expression describes the energy-structure relationship in terms of a single structural parameter, namely, the elongation of the donor's covalent bond (ΔrHB), and suggests the novel relationship of 8.0 kcal/mol pm-1 (or 0.8 kcal/mol per 0.001 Å elongation). This structural parameter is easily obtained from theory and can serve as the single descriptor of the strength of individual hydrogen bonds.

Comparative Computational Study of Frequency Shifts and Infrared Intensity Changes in Model Binary Complexes with Red- and Blue-Shifting Hydrogen Bonds

A computational study of X-H···Y binary hydrogen-bonded complexes was undertaken to examine the red- and blue-shifting behavior of three model X-H proton donors interacting with a series of Lewis bases: Y = NH3, NCLi, NCH, NCF, C2H2, BF, CO, N2 and Ne. Two of these proton donors, FArH and F3CH, have blue-shifting tendencies, while the third, FH, has red-shifting tendencies. A perturbation theory model for frequency shifts that was derived many years ago was employed to partition the predicted frequency shift into the sum of two components, one dependent on the second derivative of the interaction energy with respect to X-H displacement and the other dependent on the X-H bond length change in the binary complex. The predicted shifts were found to be in good agreement with standard ab initio computations, but they were obtained at much lower computational cost. The change in the infrared intensity of the X-H stretching frequency, expressed as a ratio of complex to monomer intensities, was also investigated, along with its relation to the X-H permanent dipole moment derivative and total induced dipole moment derivative with respect to X-H displacement, and used to rationalize the observed infrared intensity changes in the red- and blue-shifted X-H···Y complexes.

Hydrophilic Chain Length for Octylphenol Polyoxyethylene Ether Adsorption at the n-Hexadecane-Water Interface: Theoretical and Experimental Study

With the advancement of technologies for developing tight and shale reservoirs, nonionic surfactants have garnered significant attention due to their remarkable properties. The structure of these surfactants plays a crucial role in determining the characteristics of the oil-water interface, particularly influencing emulsification behavior and crude oil recovery. This study investigates the effect of varying the number of hydrophilic polar groups (n = 10, 20, 30, 50) in octylphenol polyoxyethylene ether (OP-n) on its adsorption behavior at the n-hexadecane-water interface using molecular dynamics simulation. The impact of these variations on interfacial properties was further analyzed through measurements of interfacial tension and observations of emulsion droplet morphology. The study results indicate that variations in the number of hydrophilic polar groups significantly affect interfacial properties. Increasing the number of hydrophilic polar groups led to a notable increase in the thickness of the n-hexadecane or water phase, as well as the thickness of the water or oil layer and the surfactant layer. Moreover, when the number of hydrophilic polar groups reached 20, the OP-n molecules exhibited a more curled conformation at the interface, enhancing their ability to encapsulate water and resulting in a decrease in the diffusion coefficient of the molecules in each phase. Additionally, interfacial tension was found to be positively correlated with the number of hydrophilic polar groups and remained unchanged beyond a certain emulsion diameter. This study provides a theoretical basis and reference data for optimizing surfactant structures to improve crude oil recovery.

Understanding of formation, gastrointestinal breakdown, and application of whey protein emulsion gels: Insights from intermolecular interactions

Whey protein emulsion gel is an ideal model food for revealing how the multilength scale food structures affect food digestion, as their structure and mechanical properties can be precisely manipulated by controlling the type and intensity of intermolecular interactions between protein molecules. However, there are still significant understanding gaps among intermolecular interactions, protein aggregation and gelation, emulsion gel formation, gel breakdown in the gastrointestinal tract (GIT), and the practical use of whey protein emulsion gels, which limits their GIT-targeted applications. In this regard, the relationship between the structure and digestion behavior of heat-set whey protein emulsion gels is reviewed and discussed mainly from the following aspects: (1) structural characteristics of whey protein molecules; (2) how different types of intermolecular interactions influence heat-induced aggregation and gelation of whey protein in the aqueous solutions and the oil-in-water emulsions, and the mechanical properties of the final gels; (3) functions of the mouth, the stomach, and the small intestine in processing of solid foods, and how different types of intermolecular interactions influence the breakdown properties of heat-set whey protein emulsion gels in GIT (i.e., their respective role in controlling gel digestion). Finally, the implications of knowledge derived from the formation and gastrointestinal breakdown of heat-set whey protein emulsion gels for developing controlled delivery vehicles, human satiety enhancers, and sensory modifiers are highlighted.

Aggregation-induced emission-active supramolecular polymers: from controlled preparation to applications

Supramolecular polymers are typical self-assemblies, in which repeating monomer units are bonded together with dynamic and reversible noncovalent interactions. Supramolecular polymers can combine the advantages of polymer science and supramolecular chemistry. Aggregation-induced emission (AIE) means that a molecule remains faintly emissive in the dispersed state but intensively luminescent in a highly aggregated state. AIE has brought new opportunities and further development potential to the field of polymeric chemistry. The integration of AIE luminogens with supramolecular interactions can provide new vitality for supramolecular polymers. Therefore, it is essential for scientists to understand the preparation and applications of AIE-active supramolecular polymers. This review focuses on the recent advanced progress in the preparation of AIE-active supramolecular polymers. In addition, we summarize the newly developed supramolecular polymers with an AIE nature and their applications in chemical sensing, and in vitro and in vivo imaging, as well as the visualization of their structure and properties. Finally, the development trends and challenges of AIE-active supramolecular polymers are prospected.

Attractive acceptor-acceptor interactions in self-complementary quadruple hydrogen bonds for molecular self-assembly

Molecular self-assembly provides the means for creating large supramolecular structures, extending beyond the capability of standard chemical synthesis. To harness the power of self-assembly, it is necessary to understand its driving forces. A potent method is to exploit self-complementary hydrogen bonding, where a molecule interacts with its own copy by suitable positions of hydrogen-bond donor (D) and acceptor (A) groups. With four hydrogen bonds, there are two possible self complementary patterns: the DDAA/AADD and the DADA/ADAD motifs. Of these, the DDAA pattern is usually more stable. The traditional explanation assumes that the secondary interactions between equal groups, that is, between donors (D⋯D) or acceptors (A⋯A), are repulsive. DDAA arrays would then have two, and DADA arrays six repulsive interactions. Here, using high-end quantum chemical analysis, we show that contrary to the traditional explanation, the secondary A⋯A interactions are, in fact, attractive. We revise the model of secondary interactions accordingly.

Highly sensitive detection of kojic acid in food samples using fluorescent carbon dots derived from pomegranate peel

Kojic acid (KA) has gained significant attention due to its widespread use in the food and cosmetics industries. However, concerns about its potential carcinogenic effects have heightened the need for sensitive detection methods. This study introduces a fluorescence-based optical sensor for the quantification of KA in food samples, utilizing fluorescent carbon dots (CDs) synthesized from pomegranate peel via a hydrothermal method. The Stern-Volmer plot demonstrated a linear response for KA in the range of 120 to 1200 µM, with a Pearson correlation coefficient (r) of 0.9999 and. The sensor exhibited a detection limit of 30 ± 0.04 µM and a limit of quantification (LOQ) of 90 ± 0.14 µM. Application of the developed method to soy sauce and vinegar samples yielded accurate KA determinations, with recoveries of 103.11 ± 0.96% and 104.45 ± 2.15%, respectively. These findings highlight the potential of the proposed sensor for practical applications in food quality and safety assessment, offering valuable insights into the presence of KA in food products.

Large-pore covalent organic framework as solid phase extraction absorbentforefficientdetermination of polypeptide antibiotics in animal-derived foods

The precise determination of polypeptide antibiotics (PPTs) in foods has been always challenging because of the interference of various endogenous peptides in complex matrix. Herin, a novel large-pore covalent organic framework (TABPT-SPDA-COF) with accessible pore size of 7.9 nm was synthesized as a solid phase extraction (SPE) absorbent for efficiently enriching four PPTs existed in foods originating from animals. The parameters of SPE process were systematically optimized. Subsequently, four PPTs were determined by UHPLC-MS/MS. Under the optimal conditions, TABPT-SPDA-COF shows outstanding enrichment capacity for PPTs in contrast to commercial absorbents ascribed to size selectivity and multiple interaction effects. The method exhibits excellent linear range (0.005-100 ng mL-1), satisfactory limits of detection (0.1 pg mL-1) as well as relative recoveries (86.2-116 %). This work offers a practicable platform to monitor trace PPTs from complex animal-derived foodstuffs.

Blue- and Red-Shifting C-H⋯O Hydrogen Bonds of Cyclic Ethers with Haloforms: Effect of Ring-Size and Consistency with Bent's Rule

A DFT-based computational study is carried out to delve into the interplay between hyperconjugation and rehybridization effects underlying the formation of blue- or red-shifting H-bonds (HBs) in 1 : 1 complexes of cyclic ethers (HB acceptor) of varying ring-size with haloforms, CHF3 and CHCl3 (HB donor). The calculations reveal that with decreasing angular strain (increasing ring-size) of the cyclic ethers, the extent of blue-shift increases for 1 : 1 complexes with CHF3, while a reverse sequence is observed with CHCl3, eventually leading to a red-shifting HB in the oxepane : CHCl3 complex. It is noted that the trend in the shift of C-H stretching fundamental is not mirrored by the C-H bond length or interaction energies for both the systems studied, that is, the low sensitivity of the changes on the strain on the O-atom of HB acceptor (cyclic ethers) is to be emphasized.

Hydroxylated hierarchical flower-like COF for solid-phase extraction of adrenergic receptor agonists in milk

A new detection platform based on a hydroxylated covalent organic framework (COF) integrated with liquid chromatography-tandem mass spectrometry (LC-MS/MS) was constructed and used for detecting adrenergic receptor agonists (ARAs) residues in milk. The hydroxylated COF was prepared by polymerization of tris(4-aminophenyl)amine and 1,3,5-tris(4-formyl-3-hydroxyphenyl)benzene and applied to solid-phase extraction (SPE) of ARAs. This hydroxylated COF was featured with hierarchical flower-like morphology, easy preparation, and copious active adsorption sites. The adsorption model fittings and molecular simulation were applied to explore the potential adsorption mechanism. This detection platform was suitable for detecting four α2- and five β2-ARAs residues in milk. The linear ranges of the ARAs were from 0.25 to 50 µg·kg-1; the intra-day and the inter-day repeatability were in the range 2.9-7.9% and 2.0-10.1%, respectively. This work demonstrates this hydroxylated COF has great potential as SPE cartridge packing, and provides a new way to determine ARAs residues in milk.

CO2 Desorbs Water from K-MER Zeolite under Equilibrium Control

Competitive adsorption by water in zeolites is so strongly prevalent that established gravimetric techniques for quantification have assumed that humid CO2 has no effect on preadsorbed water at the same relative humidity. Here, we demonstrate sites in small-pore zeolite K-MER, in which CO2 adsorption causes 20% of preabsorbed water to desorb under equilibrium control at 30 °C and 5% relative humidity. Diffuse reflectance IR spectroscopic data demonstrate that dimeric water species that are coordinated to cationic sites in K-MER zeolite are selectively displaced by CO2 under these humid conditions. Though Cs-RHO contains more weakly bound water than K-MER, we observe a lack of dimeric water species and no evidence of CO2 outcompeting water in Cs-RHO. We conclude that the desorption of water by CO2 in K-MER is driven by a highly desired site for CO2 adsorption as opposed to an intrinsically weak binding of water to the zeolite. Our demonstration that CO2 can outcompete water in a zeolite under wet conditions introduces new opportunities for the design of selective sites for humid CO2 adsorption and stresses the importance of independently characterizing adsorbed water and CO2 in these systems.

Identification of organic micro-pollutants in surface water using MS-based infrared ion spectroscopy

Comprehensive monitoring of organic micro-pollutants (OMPs) in drinking water sources relies on non-target screening (NTS) using liquid-chromatography and high-resolution mass spectrometry (LC-HRMS). Identification of OMPs is typically based on accurate mass and tandem mass spectrometry (MS/MS) data by matching against entries in compound databases and MS/MS spectral libraries. MS/MS spectra are, however, not always diagnostic for the full molecular structure and, moreover, emerging OMPs or OMP transformation products may not be present in libraries. Here we demonstrate how infrared ion spectroscopy (IRIS), an emerging MS-based method for structural elucidation, can aid in the identification of OMPs. IRIS measures the IR spectrum of an m/z-isolated ion in a mass spectrometer, providing an orthogonal diagnostic for molecular identification. Here, we demonstrate the workflow for identification of OMPs in river water and show how quantum-chemically predicted IR spectra can be used to screen potential candidates and suggest structural assignments. A crucial step herein is to define a set of candidate structures, presumably including the actual OMP, for which we present several strategies based on domain knowledge, the IR spectrum and MS/MS spectrum.

Decoding the infrared spectra changes upon formation of molecular complexes: the case of halogen bonding in pyridine⋯perfluorohaloarene complexes

A recently developed computational scheme is employed to interpret changes in the infrared spectra of halogen-bonded systems in terms of intermolecular interaction energy components (electrostatic, exchange, induction, dispersion) taking pyridine⋯perfluorohaloarene complexes as examples. For all complexes, we find a strong linear correlation between the different terms of the interaction-induced changes of the IR band associated with an intermolecular halogen bond stretching mode and the corresponding terms of the interaction energy, which implies that the interaction components play similar roles in both properties. This is not true for other vibrational modes localized in one of the monomers studied here, for which the corresponding interaction-induced changes in IR bands may present a completely different decomposition than the interaction energy.

D2O assisted FTIR spectroscopic analysis of moisture in edible oil

D₂O-assisted moisture analysis of edible oils was investigated. The acetonitrile extract of the oil samples was split into two parts. The spectrum of one part was taken as is, another was recorded after addition of excess D₂O. Changes in spectral absorption of the H-O-H bending band (1600-1660 cm^-1) was used to calculate moisture in oil samples. To effectively depleting absorption of water in the acetonitrile extract, a 30-fold excess of D₂O is required. The typical OH-containing constituents in oil did not show significant interference on the H/D exchange. Validation experiments by using five oils with five levels of moisture spiked (50-1000 μg/g) suggested that the prediction tracked the spiked amounts well. The results of variance analysis indicate that there is no difference in terms of analytical methods and oil types used (p < 0.001). The D₂O method developed is generally applicable to the accurate analysis of moisture at trace levels (<100 μg/g) in edible oils.

Effects of solvent polarity on the novel excited-state intramolecular thiol proton transfer and photophysical property compared with the oxygen proton transfer

Recently, the dual-fluorescent phenomena of excited state intramolecular thiol proton transfer (ESIPT) for 3-thiolflavone derivative (3NTF) were reported by Chou and coworkers for the first time [J. Am. Chem. Soc. 143 (2021) 12715-12724], which opened a new chapter in the field of ESIPT. Based on density functional theory (DFT) and time-dependent density functional theory (TDDFT), the proton transfer processes of 3NTF in toluene, dichloromethane and acetonitrile were studied. By optimizing the structure of the ground (S0) state and first excited (S1) state of 3NTF in different solvents, the hydrogen-bond parameters and proton-transfer potential energy curves were calculated. It was shown that although photo-excitation enhanced the intramolecular hydrogen bonding strength and thus promoted the occurrence of ESIPT, the solvent polarities inhibited the enhancement of the hydrogen bond of S1 state, which was not conducive to ESIPT. The electron spectra analyses were consistent with experimental data, which confirmed the rationality of molecular configurations. The time-evolved excited state dynamics simulation was performed based on the optimized structure of 3NTF, indicating that the ESIPT was an ultrafast photochemical reaction less than 180 fs. Moreover, we compared the potential energy surfaces of ESIPT, electronic structures based on natural transition orbitals (NTOs) method and electron-hole isosurfaces for the 3NTF and the traditional flavone molecule (3NHF), concluded that the unusually large Stokes shift fluorescence of 3NTF was mainly caused by the coupling of ESIPT and twisting intramolecular charge transfer (TICT), and the 3NTF isomer had the more nπ* character in the electron transition process. The nπ* ICT significantly increased with the decrease of solvent polarities, affecting the molecular photophysical properties, this made it more widely used in biomedical, photochemical, materials science and other fields.

Molecular Dynamics and Diffusion in Amorphous Solid Dispersions Containing Imidacloprid

The main goal of this study is to develop an experimental toolbox to estimate the self-diffusion coefficient of active ingredients (AI) in single-phase amorphous solid dispersions (ASD) close to the glass transition of the mixture using dielectric spectroscopy (DS) and oscillatory rheology. The proposed methodology is tested for a model system containing the insecticide imidacloprid (IMI) and the copolymer copovidone (PVP/VA) prepared via hot-melt extrusion. For this purpose, reorientational and the viscoelastic structural (α-)relaxation time constants of hot-melt-extruded ASDs were obtained via DS and shear rheology, respectively. These were then utilized to extract the viscosity as well as the fragility index of the dispersions as input parameters to the fractional Stokes-Einstein (F-SE) relation. Furthermore, a modified version of Almond-West (AW) formalism, originally developed to describe charge diffusion in ionic conductors, was exercised on the present model system for the estimation of the AI diffusion coefficients based on shear modulus relaxation times. Our results revealed that, at the calorimetric glass-transition temperature (T_g), the self-diffusion coefficients of the AI in the compositional range from infinite dilution up to 60 wt % IMI content lied in the narrow range of 10^-18-10^-20 m² s^-1, while the viscosity values of the dispersions at T_g varied between 10⁸ Pa s and 10¹⁰ Pa s. In addition, the phase diagram of the IMI-PVP/VA system was determined using the melting point depression method via differential scanning calorimetry (DSC), while mid-infrared (IR) spectroscopy was employed to investigate the intermolecular interactions within the solid dispersions. In this respect, the findings of a modest variation in melting point at different compositions stayed in agreement with the observations of weak hydrogen bonding interactions between the AI and the polymer. Moreover, IR spectroscopy showed the intermolecular IMI-IMI hydrogen bonding to have been considerably suppressed, as a result of the spatial separation of the AI molecules within the ASDs. In summary, this study provides experimental approaches to study diffusivity in ASDs using DS and oscillatory rheology, in addition to contributing to an enhanced understanding of the interactions and phase behavior in these systems.

Tuning the Chiral Structures from Self-Assembled Carbohydrate Derivatives

Carbohydrates have been regarded as one of the most ideally suited candidates for chirality study via self-assembly owning to their unique chemical structures, abundance, and sustainability. Much efforts have been devoted to design and synthesize diverse carbohydrate derivatives and self-assemble them into various supermolecular morphologies. Nevertheless, still inadequate attention is paid to deeply and comprehensively understand how the carbohydrate structures and self-assembly approaches affect the final morphologies and properties for future demands. Herein, to fulfill the need, a range of recently published studies relating to the chirality of carbohydrates is reviewed and discussed. Furthermore, to tune the chirality of carbohydrate-based structures on both molecular and superstructural levels via chirality transfer and chirality expression, the designing of the molecules and choosing of the proper approaches for self-assembly are elucidated.

Long-Lived Multiple Charge Separation by Proton-Coupled Electron Transfer

Multiple charge separation has been successfully realized by a proton-coupled electron transfer reaction in an organic cocrystal. Benefiting from the adjustable electronic energy level of the electron donor and acceptor through thermal-induced proton migration, distinct optical absorption behaviors combined with color changes to blue or green are observed in these charge-separated states. It is of interest to note that such charge-separated states exhibit a longer lifetime of over a month as a result of the excellent coplanarity and π-π interaction of the electron acceptors. Moreover, the enhanced absorption toward longer wavelengths endows the charge-separated state with near-infrared (808 nm) photothermal conversion for imaging and bacterial inhibition, whereby the conversion performance can be controlled by the degree of proton migration.

DFT and TD-DFT study of hydrogen bonded complexes of aspartic acid and n water (n = 1 and 2)

CONTEXT

Hydrogen bonds (HB) influence the conformational preferences of biomolecules and their optical and electronic properties. The directional interaction of molecules of water can be a prototype to understand the effects of HBs on biomolecules. Among the neurotransmitters (NT), L-aspartic acid (ASP) stands out due to its importance in health and as a precursor of several biomolecules. As it presents different functional groups and readily forms inter- and intramolecular HBs, ASP can be considered a prototype for understanding the behavior of NTs when interacting by HB with other substances. Although several theoretical studies have been performed in the past on isolated ASP and its formed complexes with water, both in gas and liquid phases, using DFT and TD-DFT formalisms, these works did not perform large basis set calculations or study electronic transitions of ASP-water complexes. We investigated the HB interactions in complexes of ASP and water molecules. The results show that the interactions between the carboxylic groups of ASP with water molecules, forming cyclic structures with two HBs, lead to more stable and less polar complexes than other conformers formed between water and the NH₂ group. It was observed that there is a relationship between the deviation in the UV-Vis absorption band of the ASP and the interactions of water with the HOMO and LUMO orbitals with the stabilization/destabilization of the S₁ state to the S₀ of the complexes. However, in some cases, such as 1:1 complex ASP-W2, this analysis may be inaccurate due to small changes in ΔE.

METHODS

We studied the landscapes of the ground state surface of different conformers of isolated L-ASP and the L-ASP-(H₂O)_n complexes (n = 1 and 2) using the DFT formalism, with the B3LYP functional, and six different basis sets: 6-31 +  + G(d,p), 6-311 +  + G(d,p), D95 +  + (d,p), D95V +  + (d,p), cc-pVDZ, and, cc-pVTZ basis sets. The cc-pVTZ basis set provides the minimum energy of all conformers, and therefore, we performed the analysis with this basis set. We evaluated the stabilization of the ASP and complexes using the minimum ground state energy, corrected by the zero point energy and the interaction energy between the ASP and the water molecules. We also calculated the vertical electronic transitions S₁ ← S₀, and their properties using the TD-DFT formalism at B3LYP/cc-pVTZ level with the optimized geometries for S₀ state with the same basis set. For the analysis of the vertical transitions of isolated ASP and the ASP-(H₂O)_n complexes, we calculated the electrostatic energy in the S₀ and S₁ states. We performed the calculations with the Gaussian 09 software package. We used the VMD software package to visualize the geometries and shapes of the molecule and complexes.

Molecular Pincers Using a Combination of N-H and C-H Donors for Anion Binding

A naphthalene imide (1) and a naphthalene (2) bearing two pyrrole units have been synthesized, respectively, as anion receptors. It was revealed by ¹H NMR spectral studies carried out in CD₃CN that receptors 1 and 2 bind various anions via hydrogen bonds using both C-H and N-H donors. Compared with receptor 2, receptor 1 shows higher affinity for the test anions because of the enhanced acidity of its pyrrole NH and naphthalene CH hydrogens by the electron-withdrawing imide substituent. Molecular mechanics computations demonstrate that the receptors contact the halide anions via only one of the two respective available N-H and C-H donors whereas they use all four donors for binding of the oxyanions such as dihydrogen phosphate and hydrogen pyrophosphate. Receptor 1, a push-pull conjugated system, displays a strong fluorescence centered at 625 nm, while receptor 2 exhibits an emission with a maximum peak at 408 nm. In contrast, upon exposure of receptors 1 and 2 to the anions in question, their fluorescence was noticeably quenched particularly with relatively basic anions including F^-, H₂PO₄^-, HP₂O₇^3-, and HCO₃^-.

Intrinsically Stretchable, Highly Efficient Organic Solar Cells Enabled by Polymer Donors Featuring Hydrogen-Bonding Spacers

Intrinsically stretchable organic solar cells (IS-OSCs), consisting of all stretchable layers, are attracting significant attention as a future power source for wearable electronics. However, most of the efficient active layers for OSCs are mechanically brittle due to their rigid molecular structures designed for high electrical and optical properties. Here, a series of new polymer donors (P_D s, PhAmX) featuring phenyl amide (N¹ ,N³ -bis((5-bromothiophen-2-yl)methyl)isophthalamide, PhAm)-based flexible spacer (FS) inducing hydrogen-bonding (H-bonding) interactions is developed. These P_D s enable IS-OSCs with a high power conversion efficiency (PCE) of 12.73% and excellent stretchability (PCE retention of >80% of the initial value at 32% strain), representing the best performances among the reported IS-OSCs to date. The incorporation of PhAm-based FS enhances the molecular ordering of P_D s as well as their interactions with a Y7 acceptor, enhancing the mechanical stretchability and electrical properties simultaneously. It is also found that in rigid OSCs, the PhAm5:Y7 blend achieves a much higher PCE of 17.5% compared to that of the reference PM6:Y7 blend. The impact of the PhAm-FS linker on the mechanical and photovoltaic properties of OSCs is thoroughly investigated.

Physicochemical properties calculated using DFT method and changes of 5-methyluridine hemihydrate crystals at high temperatures

5-methyluridine hemihydrate (5 mU) single crystals were synthesized by the slow solvent evaporation method. The physicochemical properties, such as frontier molecular orbitals, global reactivity indices and vibrational were computationally studied through density functional theory (DFT). In addition, structural, vibrational, and thermal properties were obtained by powder X-ray diffraction (PXRD), Raman spectroscopy, thermogravimetric (TG) analysis and differential scanning calorimetry (DSC). PXRD evaluated the structural behavior of 5 mU crystal in the temperature range of 300-460 K. The high-temperature PXRD results suggested that the crystal undergoes two dehydration processes, being a first occurring from the orthorhombic structure (P2₁2₁2) to triclinic (P1), in which the water losses occurred around 380 K. A second dehydration triggers the change from the triclinic structure to monoclinic (P2₁) within the 420-435 K temperature range. Furthermore, after this temperature, the anhydrous 5 mU suffers a melting process near 460 K, which is remarkably characterized as an irreversible process. Raman spectroscopy was carried out to identify the vibrational modes linked to the water molecule and the noticeable changes in these bands due to high-temperature effects around 380 K and 410 K. Indeed, changes on Raman bands, such as intensity inversion, the disappearance of bands associated with the hydrogen bonds formed from the water molecules and uracil group, and the ribose group were observed. Finally, this study provided details on the structural and vibrational changes caused by the dehydration of 5 mU crystals and the importance of hydrogen bonds for understanding the intermolecular interactions of the 5 mU, a methylated nucleoside with important biological functions.

The Role of Non-Covalent Bonds in the Deformation Process of Coal: An Experimental Study on Bituminous Coal

The chemical structures of tectonically deformed coal are significantly altered by stress. However, the stress response of non-covalent bonds in deformation experiments and the role of non-covalent bonds in the deformation process of coal have not been studied yet. In this work, coals before and after simulative deformation experiments were systematically investigated to uncover the coal’s deformation mechanism and the variation of non-covalent bonds. The results indicate that differential stress and temperature can promote ductile deformation while confine pressure hinders the deformation process. Differential stress and temperature in the ranges of 100–150 MPa and 100–200 °C, respectively, are key transition conditions from brittle to ductile deformation for the selected bituminous coal. Furthermore, hydrogen bonds and π–π bonds crosslinking coal molecular networks determine the mechanical properties of the coal. The simulative deformation experiments indicate that, with an increase in the coal’s deformation intensity, hydrogen bonds and π–π bonds are inclined to be disrupted in the relaxation stage, which enhances the motion ability of the liberated molecular structures and reduces the brittleness of the coal. In the rearrangement stage, tighter and more ordered configurations are formed, accompanied by the formation of π–π bonds. Coals in the deformation experiments are inclined to undergo ductile deformation once sufficient non-covalent bonds are cleaved in the relaxation stage.

Structure and interactions at the Mg(0001)/water interface: An ab initio study

A molecular level understanding of metal/bulk water interface structure is key for a wide range of processes, including aqueous corrosion, which is our focus, but their buried nature makes experimental investigation difficult and we must mainly rely on simulations. We investigate the Mg(0001)/water interface using second generation Car–Parrinello molecular dynamics (MD) to gain structural information, combined with static density functional theory calculations to probe the atomic interactions and electronic structure (e.g., calculating the potential of zero charge). By performing detailed structural analyses of both metal–surface atoms and the near-surface water, we find that, among other insights: (i) water adsorption causes significant surface roughening (the planar distribution for top-layer Mg has two peaks separated by [Formula: see text]), (ii) strongly adsorbed water covers only [Formula: see text] of available surface sites, and (iii) adsorbed water avoids clustering on the surface. Static calculations are used to gain a deeper understanding of the structuring observed in MD. For example, we use an energy decomposition analysis combined with calculated atomic charges to show that adsorbate clustering is unfavorable due to Coulombic repulsion between adsorption site surface atoms. Results are discussed in the context of previous simulations carried out on other metal/water interfaces. The largest differences for the Mg(0001)/water system appear to be the high degree of surface distortion and the minimal difference between the metal work function and metal/water potential of zero charge (at least compared to other interfaces with similar metal–water interaction strengths). The structural information, in this paper, is important for understanding aqueous Mg corrosion, as the Mg(0001)/water interface is the starting point for key reactions. Furthermore, our focus on understanding the driving forces behind this structuring leads to important insights for general metal/water interfaces.

Transition Metal Catalysis Controlled by Hydrogen Bonding in the Second Coordination Sphere

Transition metal catalysis is of utmost importance for the development of sustainable processes in academia and industry. The activity and selectivity of metal complexes are typically the result of the interplay between ligand and metal properties. As the ligand can be chemically altered, a large research focus has been on ligand development. More recently, it has been recognized that further control over activity and selectivity can be achieved by using the "second coordination sphere", which can be seen as the region beyond the direct coordination sphere of the metal center. Hydrogen bonds appear to be very useful interactions in this context as they typically have sufficient strength and directionality to exert control of the second coordination sphere, yet hydrogen bonds are typically very dynamic, allowing fast turnover. In this review we have highlighted several key features of hydrogen bonding interactions and have summarized the use of hydrogen bonding to program the second coordination sphere. Such control can be achieved by bridging two ligands that are coordinated to a metal center to effectively lead to supramolecular bidentate ligands. In addition, hydrogen bonding can be used to preorganize a substrate that is coordinated to the metal center. Both strategies lead to catalysts with superior properties in a variety of metal catalyzed transformations, including (asymmetric) hydrogenation, hydroformylation, C-H activation, oxidation, radical-type transformations, and photochemical reactions.

Mixed matrix of MOF@COF hybrids for enrichment and determination of phenoxy carboxylic acids in water and vegetables

A novel mixed matrix of MOF@COF hybrid was firstly formed by coating of hexahedral cage structure MOF with lightweight porous COF, and applied in dispersive solid-phase extraction of the phenoxy carboxylic acids (PCAs) from water and vegetable samples. Combined with liquid chromatography-tandem mass spectrometry, an excellent method with low limits of detection (0.69-1.79 ng·L^-1/0.002-0.006 ng·g^-1), good reproducibility (1.32%-7.02%/1.81%-6.71%), and excellent linearities (10-1000 ng·L^-1, R ≥ 0.9955/0.04-50 ng·g^-1, R ≥ 0.9966) was established. The adsorption mechanisms deduced that the π-π interaction, hydrophobic effects, hydrogen bond, and halogen bond may promote the excellent adsorption of the PCAs. Finally, the applicability of the method was verified by spiking four kinds of water and vegetable samples with PCAs, and satisfying recoveries were obtained (between 83.3% and 104.9%).

Bonding analysis of water clusters using quasi-atomic orbitals

The quasi-atomic orbital (QUAO) bonding analysis introduced by Ruedenberg and co-workers is used to develop an understanding of the hydrogen bonds in small water clusters, from the dimer through the hexamer (bag, boat, book, cyclic, prism and cage conformers). Using kinetic bond orders as a metric, it is demonstrated that as the number of waters in simple cyclic clusters increases, the hydrogen bonds strengthen, from the dimer through the cyclic hexamer. However, for the more complex hexamer isomers, the strength of the hydrogen bonds varies, depending on whether the cluster contains double acceptors and/or double donors. The QUAO analysis also reveals the three-center bonding nature of hydrogen bonds in water clusters.

Self-assembly in biobased nanocomposites for multifunctionality and improved performance

Concerns of petroleum dependence and environmental pollution prompt an urgent need for new sustainable approaches in developing polymeric products. Biobased polymers provide a potential solution, and biobased nanocomposites further enhance the performance and functionality of biobased polymers. Here we summarize the unique challenges and review recent progress in this field with an emphasis on self-assembly of inorganic nanoparticles. The conventional wisdom is to fully disperse nanoparticles in the polymer matrix to optimize the performance. However, self-assembly of the nanoparticles into clusters, networks, and layered structures provides an opportunity to address performance challenges and create new functionality in biobased polymers. We introduce basic assembly principles through both blending and in situ synthesis, and identify key technologies that benefit from the nanoparticle assembly in the polymer matrix. The fundamental forces and biobased polymer conformations are discussed in detail to correlate the nanoscale interactions and morphology with the macroscale properties. Different types of nanoparticles, their assembly structures and corresponding applications are surveyed. Through this review we hope to inspire the community to consider utilizing self-assembly to elevate functionality and performance of biobased materials. Development in this area sets the foundation for a new era of designing sustainable polymers in many applications including packaging, construction chemicals, adhesives, foams, coatings, personal care products, and advanced manufacturing.

Conductive Hydrogels with Dynamic Reversible Networks for Biomedical Applications

Conductive hydrogels (CHs) are emerging as a promising and well-utilized platform for 3D cell culture and tissue engineering to incorporate electron signals as biorelevant physical cues. In conventional covalently crosslinked conductive hydrogels, the network dynamics (e.g., stress relaxation, shear shining, and self-healing) required for complex cellular functions and many biomedical utilities (e.g., injection) cannot be easily realized. In contrast, dynamic conductive hydrogels (DCHs) are fabricated by dynamic and reversible crosslinks. By allowing for the breaking and reforming of the reversible linkages, DCHs can provide dynamic environments for cellular functions while maintaining matrix integrity. These dynamic materials can mimic some properties of native tissues, making them well-suited for several biotechnological and medical applications. An overview of the design, synthesis, and engineering of DCHs is presented in this review, focusing on the different dynamic crosslinking mechanisms of DCHs and their biomedical applications.

CH⋯O H-bond mediated tautomerization of 2-methyl-1,3-cyclohexanedione: A combined IR spectroscopic and theoretical study

Molecular association and its impact on the keto-enol tautomerization of 2-methyl-1,3-cyclohexanedione (MCHD) have been investigated in low temperature argon matrix and thin solid film. The system exists exclusively in diketo tautomeric form in argon matrix. The CH⋯O H-bonded homodimers of the diketo tautomer are produced by annealing the matrix at 28 K. No trace of the keto-enol tautomer is observed in matrix isolated homodimers in the temperature range of 8-28 K. However, tautomeric conversion initiates in a thin film of pure diketo tautomer when the temperature of the film is raised to ~170 K. Transition state calculations on the monomeric and dimeric MCHD demonstrate that CH⋯O H-bond formations between diketo tautomers play a vital role in lowering the tautomerization barrier. However, the extent of CH⋯O H-bonded dimer formation in matrix isolation, as well as extent of tautomerization in the neat sample are found to be smaller than that for the previously reported 1,3-cyclohexanedione (CHD) under similar experimental conditions (J. Phys. Chem. A 2012, 116, 3836-3845). Electronic structure calculations suggest that formation of the CH⋯O H-bonded dimer is less feasible in presence of the bulky 2-methyl groups of MCHD, as compared to CHD. Additionally, the transition state geometry of the dimeric keto-enol product of MCHD, as compared to the same for CHD, is more strained and offers a weaker CH---O H-bond that contributes to lesser tautomeric conversion in the former.