Evaluation of headspace equilibration methods for quantifying greenhouse gases in groundwater

Nitrous oxide and methane production and consumption at five full-size denitrifying bioreactors treating subsurface drainage water

Nitrate (NO3-) removal in denitrifying bioreactors is influenced by flow, water chemistry, and design, but it is not known how these widely varying factors impact the production of nitrous oxide (N2O) or methane (CH4) across sites. Woodchip bioreactors link the hydrosphere and atmosphere in this respect, so five full-size bioreactors in Illinois, USA, were monitored for NO3-, N2O, and CH4 to better document where this water treatment technology resides along the pollution swapping to climate smart spectrum. Both surface fluxes and dissolved forms of N2O and CH4 were measured (n = 7-11 sampling campaigns per site) at bioreactors ranging from <1 to nearly 5 years old and treating subsurface drainage areas from between 6.9 and 29 ha. Across all sites, N2O surface and dissolved volumetric production rates averaged 1.0 ± 1.6 mg N2O-N/m3-d and 24 ± 62 mg dN2O-N/m3-d, respectively, and CH4 production rates averaged 6.0 ± 26 mg CH4-C/m3-d and 310 ± 520 mg dCH4-C/m3-d for surface and dissolved, respectively. However, N2O was consistently consumed at one bioreactor, and only three of the five sites produced notable CH4. Surface fluxes of CH4 were significantly reduced by the presence of a soil cover. Bioreactor denitrification was relatively efficient, with only 0.51 ± 3.5 % of removed nitrate emitted as N2O (n = 48). Modeled indirect N2O emissions factors were significantly lower when a bioreactor was present versus absent (EF5: 0.0055 versus 0.0062 kg N2O-N/kg NO3-N; p = 0.0011). While further greenhouse gas research on bioreactors is recommended, this should not be used as an excuse to slow adoption efforts. Bioreactors provide a practical option for voluntary water quality improvement in the heavily tile-drained US Midwest and elsewhere.

Practical Guide to Measuring Wetland Carbon Pools and Fluxes

Wetlands cover a small portion of the world, but have disproportionate influence on global carbon (C) sequestration, carbon dioxide and methane emissions, and aquatic C fluxes. However, the underlying biogeochemical processes that affect wetland C pools and fluxes are complex and dynamic, making measurements of wetland C challenging. Over decades of research, many observational, experimental, and analytical approaches have been developed to understand and quantify pools and fluxes of wetland C. Sampling approaches range in their representation of wetland C from short to long timeframes and local to landscape spatial scales. This review summarizes common and cutting-edge methodological approaches for quantifying wetland C pools and fluxes. We first define each of the major C pools and fluxes and provide rationale for their importance to wetland C dynamics. For each approach, we clarify what component of wetland C is measured and its spatial and temporal representativeness and constraints. We describe practical considerations for each approach, such as where and when an approach is typically used, who can conduct the measurements (expertise, training requirements), and how approaches are conducted, including considerations on equipment complexity and costs. Finally, we review key covariates and ancillary measurements that enhance the interpretation of findings and facilitate model development. The protocols that we describe to measure soil, water, vegetation, and gases are also relevant for related disciplines such as ecology. Improved quality and consistency of data collection and reporting across studies will help reduce global uncertainties and develop management strategies to use wetlands as nature-based climate solutions.

Supplementary Information

The online version contains supplementary material available at 10.1007/s13157-023-01722-2.

Simultaneous detection of greenhouse gases CH4 and CO2 based on a dual differential photoacoustic spectroscopy system

In addition to the atmospheric measurement, detection of dissolved carbon oxides and hydrocarbons in a water region is also an important aspect of greenhouse gas monitoring, such as CH4 and CO2. The first step of measuring dissolved gases is the separation process of water and gases. However, slow degassing efficiency is a big challenge which requires the gas detection technology itself with low gas consumption. Photoacoustic spectroscopy (PAS) is a good choice with advantages of high sensitivity, low gas consumption, and zero background, which has been rapidly developed in recent years and is expected to be applied in the field of dissolved gas detection. In this study, a miniaturized differential photoacoustic cell with a volume of 7.9 mL is designed for CH4 and CO2 detection, and a dual differential method with four microphones is proposed to enhance the photoacoustic signal. What we believe to be a new method increases photoacoustic signal by 4 times and improves the signal to noise ratio (SNR) over 10 times compared with the conventional single-microphone mode. Two distributed feedback (DFB) lasers at 1651 nm and 2004nm are employed to construct the PAS system for CH4 and CO2 detection respectively. Wavelength modulation spectroscopy (WMS) and 2nd harmonic demodulation techniques are applied to further improve the SNR. As a result, sensitivity of 0.44 ppm and 7.39 ppm for CH4 and CO2 are achieved respectively with an integration time of 10 s. Allan deviation analysis indicates that the sensitivity can be further improved to 42 ppb (NNEA=4.7×10-10cm-1WHz-1/2) for CH4 and 0.86 ppm (NNEA=5.3×10-10cm-1WHz-1/2) for CO2 when the integration time is extended to 1000 s.

Dissolved greenhouse gas emissions from agricultural groundwater irrigation in the Guanzhong Basin of China

While evidence indicates that groundwater is a potential source for greenhouse gas (GHG) emissions, information for such emissions in groundwater used for irrigation is lacking. Based on 23 wells in the mid-western Guanzhong Basin of China, we investigated the dissolved CO₂, N₂O, and CH₄ distributions in groundwater, their relationships with water indicators, and emission fluxes during flood irrigation. We found zero methane, but CO₂ and N₂O were 30 and 25 times, respectively, supersaturated compared to atmospheric concentrations. Dissolved N₂O in groundwater was positively correlated with NO₃^--N (P = 0.009), while CO₂ depended mainly on low pH and high dissolved inorganic carbon. The CO₂ and N₂O emission fluxes detected in wellheads, especially in shallow wells, implied potential emissions. Flood irrigation experiments showed that 24.55% of dissolved CO₂ and 36.81% of dissolved N₂O in groundwater was degassed immediately (within 12 min of irrigation) to the atmosphere. Our study demonstrates that direct GHG emissions from groundwater used for agricultural irrigation in the Guanzhong Basin are potentially equivalent to about 2-4% of the GHG emissions from 3 years of fertilizer use on these farmlands, so further research should focus on optimizing irrigation strategies to mitigate GHG emissions.

Repeated large-scale mechanical treatment of invasive Typha under increasing water levels promotes floating mat formation and wetland methane emissions

Invasive species management typically aims to promote diversity and wildlife habitat, but little is known about how management techniques affect wetland carbon (C) dynamics. Since wetland C uptake is largely influenced by water levels and highly productive plants, the interplay of hydrologic extremes and invasive species is fundamental to understanding and managing these ecosystems. During a period of rapid water level rise in the Laurentian Great Lakes, we tested how mechanical treatment of invasive plant Typha × glauca shifts plant-mediated wetland C metrics. From 2015 to 2017, we implemented large-scale treatment plots (0.36-ha) of harvest (i.e., cut above water surface, removed biomass twice a season), crush (i.e., ran over biomass once mid-season with a tracked vehicle), and Typha-dominated controls. Treated Typha regrew with approximately half as much biomass as unmanipulated controls each year, and Typha production in control stands increased from 500 to 1500 g-dry mass m^-2 yr^-1 with rising water levels (~10 to 75 cm) across five years. Harvested stands had total in-situ methane (CH₄) flux rates twice as high as in controls, and this increase was likely via transport through cut stems because crushing did not change total CH₄ flux. In 2018, one year after final treatment implementation, crushed stands had greater surface water diffusive CH₄ flux rates than controls (measured using dissolved gas in water), likely due to anaerobic decomposition of flattened biomass. Legacy effects of treatments were evident in 2019; floating Typha mats were present only in harvested and crushed stands, with higher frequency in deeper water and a positive correlation with surface water diffusive CH₄ flux. Our study demonstrates that two mechanical treatments have differential effects on Typha structure and consequent wetland CH₄ emissions, suggesting that C-based responses and multi-year monitoring in variable water conditions are necessary to accurately assess how management impacts ecological function.

Indirect emissions of nitrous oxide in a cropland watershed with contrasting hydrology in central France

Nitrous oxide (N₂O) is an important greenhouse gas. Its atmospheric concentration have increased with the industrialisation and the use of N fertilizer. The contribution of freshwater systems to N₂O emissions is still very uncertain, while regional transfer of nitrogen depends on soil and hydrology. Riverine and spring N₂O dissolved in water was therefore measured over two years in the 3453 km² Haut-Loir watershed (France). This temperate cropland watershed is characterized by two different hydrological systems east and west of the Loir River. The eastern rivers, fed by the emergence of the deep Beauce aquifer, exhibited significantly higher dissolved N₂O concentrations (Beauce region, mean: 2.93 μg-N L^-1) than the western rivers (Perche region, mean: 0.87 μg-N L^-1), which were largely influenced by runoff during winter flooding. The eastern rivers had large nitrate concentrations all over the year; in the Perche, nitrate underwent a seasonal cycle with large loads during winter floods, but there were no consistent seasonal patterns in N₂O. The ratios of N₂O in excess of equilibrium on nitrate, often used as a proxy of emission factor (EF), were much smaller than the default IPCC values, both for rivers (0.014% versus 0.25% for IPCC EF_5r) and the Loir spring (0.085% versus 0.6% for the IPCC EF_5g for groundwater and springs). EF_5r were significantly different between the two parts of the watershed only in winter, because of the seasonal variability of NO₃^-. Moreover dissolved N₂O is controlled not only by NO₃^-, as it is considered in the calculation of the EF₅, but also by water pH and dissolved organic carbon. A good prediction of dissolved N₂O was obtained using these physicochemical variables and hydrological regions. Thus, these results suggest that the spatial variability of riverine N₂O depends on local hydrology, while further research is needed to understand the seasonal variability.

Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface

An enormous diversity of previously unknown bacteria and archaea has been discovered recently, yet their functional capacities and distributions in the terrestrial subsurface remain uncertain. Here, we continually sampled a CO₂-driven geyser (Colorado Plateau, Utah, USA) over its 5-day eruption cycle to test the hypothesis that stratified, sandstone-hosted aquifers sampled over three phases of the eruption cycle have microbial communities that differ both in membership and function. Genome-resolved metagenomics, single-cell genomics and geochemical analyses confirmed this hypothesis and linked microorganisms to groundwater compositions from different depths. Autotrophic Candidatus “Altiarchaeum sp.” and phylogenetically deep-branching nanoarchaea dominate the deepest groundwater. A nanoarchaeon with limited metabolic capacity is inferred to be a potential symbiont of the Ca. “Altiarchaeum”. Candidate Phyla Radiation bacteria are also present in the deepest groundwater and they are relatively abundant in water from intermediate depths. During the recovery phase of the geyser, microaerophilic Fe- and S-oxidizers have high in situ genome replication rates. Autotrophic Sulfurimonas sustained by aerobic sulfide oxidation and with the capacity for N₂ fixation dominate the shallow aquifer. Overall, 104 different phylum-level lineages are present in water from these subsurface environments, with uncultivated archaea and bacteria partitioned to the deeper subsurface.

Analysis of a CO₂-driven geyser over a complete eruption cycle showed temporal changes in microbial community composition and function, associated with eruption phase and aquifer water depth, and revealed a putative archaeal symbiosis.

Groundwater nitrate reduction versus dissolved gas production: A tale of two catchments

At the catchment scale, a complex mosaic of environmental, hydrogeological and physicochemical characteristics combine to regulate the distribution of groundwater and stream nitrate (NO₃^-). The efficiency of NO₃^- removal (via denitrification) versus the ratio of accumulated reaction products, dinitrogen (excess N₂) & nitrous oxide (N₂O), remains poorly understood. Groundwater was investigated in two well drained agricultural catchments (10km²) in Ireland with contrasting subsurface lithologies (sandstone vs. slate) and landuse. Denitrification capacity was assessed by measuring concentration and distribution patterns of nitrogen (N) species, aquifer hydrogeochemistry, stable isotope signatures and aquifer hydraulic properties. A hierarchy of scale whereby physical factors including agronomy, water table elevation and permeability determined the hydrogeochemical signature of the aquifers was observed. This hydrogeochemical signature acted as the dominant control on denitrification reaction progress. High permeability, aerobic conditions and a lack of bacterial energy sources in the slate catchment resulted in low denitrification reaction progress (0-32%), high NO₃^- and comparatively low N₂O emission factors (EF_5g1). In the sandstone catchment denitrification progress ranged from 4 to 94% and was highly dependent on permeability, water table elevation, dissolved oxygen concentration solid phase bacterial energy sources. Denitrification of NO₃- to N₂ occurred in anaerobic conditions, while at intermediate dissolved oxygen; N₂O was the dominant reaction product. EF_5g1 (mean: 0.0018) in the denitrifying sandstone catchment was 32% less than the IPCC default. The denitrification observations across catchments were supported by stable isotope signatures. Stream NO₃^- occurrence was 32% lower in the sandstone catchment even though N loading was substantially higher than the slate catchment.

Dynamics and emissions of N2O in groundwater: A review

This work reviews the concentrations, the dynamics and the emissions of nitrous oxide (N₂O) in groundwater. N₂O is an important greenhouse gas (GHG) and the primary stratospheric ozone depleting substance. The major anthropogenic source that contributes to N₂O generation in aquifers is agriculture because the use of fertilizers has led to the widespread groundwater contamination by inorganic nitrogen (N) (mainly nitrate, NO₃^-). Once in the aquifer, this inorganic N is transported and affected by several geochemical processes that produce and consume N₂O. An inventory of dissolved N₂O concentrations is presented and the highest concentration is about 18.000 times higher than air-equilibrated water (up to 4004μg N L^-1). The accumulation of N₂O in groundwater is mainly due to denitrification and to lesser extent to nitrification. Their occurrence depend on the geochemical (e.g., NO₃^-, dissolved oxygen, ammonium and dissolved organic carbon) as well as hydrogeological parameters (e.g., groundwater table fluctuations and aquifer permeability). The coupled understanding of both parameters is necessary to gain insight on the dynamics and the emissions of N₂O in groundwater. Overall, groundwater indirect N₂O emissions seem to be a minor component of N₂O emissions to the atmosphere. Further research might be devoted to evaluate the groundwater contribution to the indirect emissions of N₂O because this will help to better constraint the N₂O global budget and, consequently, the N budget.

Soil Incorporation of Silica-Rich Rice Husk Decreases Inorganic Arsenic in Rice Grain

Arsenic decreases rice yield, and inorganic grain As threatens human health; thus, strategies to decrease rice As are critically needed. Increased plant-available silica (Si) can decrease rice As, yet the source of Si matters. Rice husk, an underutilized and Si-rich byproduct of rice production that contains less labile C and an order of magnitude less As than rice straw, may be an economically viable Si resource to decrease rice As, yet the impact of rice husk incorporation on As in the rice-soil nexus has not been reported. This proof-of-concept study shows that rice husk incorporation to soil (1% w/w) decreases inorganic grain As by 25-50% without negatively affecting grain Cd, yield, or dissolved CH4 levels. Rice husk is a critical yet perhaps overlooked resource to improve soil quality through enhanced nutrient availability and attenuate human health risks through consumption of As-laden grain.

Evaluation of water quality functions of conventional and advanced soil-based onsite wastewater treatment systems

Shallow narrow drainfields are assumed to provide better wastewater renovation than conventional drainfields and are used for protection of surface and ground water. To test this assumption, we evaluated the water quality functions of two advanced onsite wastewater treatment system (OWTS) drainfields-shallow narrow (SND) and Geomat (GEO)-and a conventional pipe and stone (P&S) drainfield over 12 mo using replicated ( = 3) intact soil mesocosms. The SND and GEO mesocosms received effluent from a single-pass sand filter, whereas the P&S received septic tank effluent. Between 97.1 and 100% of 5-d biochemical oxygen demand (BOD), fecal coliform bacteria, and total phosphorus (P) were removed in all drainfield types. Total nitrogen (N) removal averaged 12.0% for P&S, 4.8% for SND, and 5.4% for GEO. A mass balance analysis accounted for 95.1% (SND), 94.1% (GEO), and 87.6% (P&S) of N inputs. When the whole treatment train (excluding the septic tank) is considered, advanced systems, including sand filter pretreatment and SND or GEO soil-based treatment, removed 99.8 to 99.9% of BOD, 100% of fecal coliform bacteria and P, and 26.0 to 27.0% of N. In contrast, the conventional system removed 99.4% of BOD and 100% of fecal coliform bacteria and P but only 12.0% of N. All drainfield types performed similarly for most water quality functions despite differences in placement within the soil profile. However, inclusion of the pretreatment step in advanced system treatment trains results in better N removal than in conventional treatment systems despite higher drainfield N removal rates in the latter.

In situ measurement of dissolved methane and carbon dioxide in freshwater ecosystems by off-axis integrated cavity output spectroscopy

A novel low-cost method for the combined, real-time, and in situ determination of dissolved methane and carbon dioxide concentrations in freshwater ecosystems was designed and developed. This method is based on the continuous sampling of water from a freshwater ecosystem to a gas/liquid exchange membrane. Dissolved gas is transferred through the membrane to a continuous flow of high purity nitrogen, which is then measured by an off-axis integrated cavity output spectrometer (OA-ICOS). This method, called M-ICOS, was carefully tested in a laboratory and was subsequently applied to four lakes in Mexico and Alaska with contrasting climates, ecologies, and morphologies. The M-ICOS method allowed for the determination of dissolved methane and carbon dioxide concentrations with a frequency of 1 Hz and with a method detection limit of 2.76 × 10(-10) mol L(-1) for methane and 1.5 × 10(-7) mol L(-1) for carbon dioxide. These detection limits are below saturated concentrations with respect to the atmosphere and significantly lower than the minimum concentrations previously reported in lakes. The method is easily operable by a single person from a small boat, and the small size of the suction probe allows the determination of dissolved gases with a minimized impact on shallow freshwater ecosystems.

Mustard catch crop enhances denitrification in shallow groundwater beneath a spring barley field

Over-winter green cover crops have been reported to increase dissolved organic carbon (DOC) concentrations in groundwater, which can be used as an energy source for denitrifiers. This study investigates the impact of a mustard catch crop on in situ denitrification and nitrous oxide (N2O) emissions from an aquifer overlain by arable land. Denitrification rates and N2O-N/(N2O-N+N2-N) mole fractions were measured in situ with a push-pull method in shallow groundwater under a spring barley system in experimental plots with and without a mustard cover crop. The results suggest that a mustard cover crop could substantially enhance reduction of groundwater nitrate NO3--N via denitrification without significantly increasing N2O emissions. Mean total denitrification (TDN) rates below mustard cover crop and no cover crop were 7.61 and 0.002 μg kg(-1) d(-1), respectively. Estimated N2O-N/(N2O-N+N2-N) ratios, being 0.001 and 1.0 below mustard cover crop and no cover crop respectively, indicate that denitrification below mustard cover crop reduces N2O to N2, unlike the plot with no cover crop. The observed enhanced denitrification under the mustard cover crop may result from the higher groundwater DOC under mustard cover crop (1.53 mg L(-1)) than no cover crop (0.90 mg L(-1)) being added by the root exudates and root masses of mustard. This study gives insights into the missing piece in agricultural nitrogen (N) balance and groundwater derived N2O emissions under arable land and thus helps minimise the uncertainty in agricultural N and N2O-N balances.