Soil microbial community and their functional genes during grassland restoration

Microbial degradation potential of microplastics in urban river sediments: Assessing and predicting the enrichment of PE/PP-degrading bacteria using SourceTracker and machine learning

Microplastic mitigation strategies that adapt to various actual aquatic environments require the ability to predict their microbial degradation potential. However, the sources and enrichment characteristics of the degrading bacteria in the plastisphere from river sediments, and their relationship with environmental conditions remain poorly understood. Here, SourceTracker analysis was adopted to investigate the sources and distribution characteristics of total PE/PP-degrading bacteria (TD) and local PE/PP-degrading bacteria (LD) in the plastisphere and surrounding sediments of the urban river. To better characterize the enrichment property of PE/PP-degrading bacteria in the plastisphere, two specific indices, the enrichment ratios of TD (ERTD) and LD (ERLD) separately, were first defined in this study. Furthermore, machine learning models were constructed to predict these enrichment ratios. The results showed that river sediments represented an important reservoir of PE/PP-degrading bacteria within the plastisphere (representing 81.8 %). Both the enrichment ratio of TD (R2 = 0.720) and the enrichment ratio of LD (R2 = 0.537) showed a significant positive correlation with the carbonyl index of PE/PP, indicating that the enrichment ratios can effectively reflect the microbial degradation potential of PE/PP in sediments. Compared to gradient boosting regression tree, multilayer perceptron, and support vector machines, the random forest (RF) model demonstrated superior accuracy in predicting both the enrichment ratio of TD (R2Test = 0.954, MSE = 0.180) and the enrichment ratio of LD (R2Test = 0.924, MSE = 0.009. It was also observed that the enrichment ratios were higher in river bends, indicating that river bends were potential hot zones for microbial degradation of PE/PP. SHAP analysis highlighted that the key environmental factors exhibited synergistic effects on both enrichment ratios of TD and LD. Finally, the concentration range of key environmental factors that maximize the enrichment ratio was determined. This study constitutes a powerful example of predicting microplastic microbial degradation potential across various scientific disciplines and provides a basis for the effective management of microplastics.

Effect of Seasonal Variations on Soil Microbial, Extracellular Enzymes, and Ecological Stoichiometry in Tea Plantations

Tea plantations are important agricultural ecosystems in karst areas, yet the seasonal dynamics of soil microbial communities, functional genes, and extracellular enzyme activities (EEA) under different management practices remain poorly understood. This study investigated organic (HY), pollution-free (TS), and conventional (XY) tea plantations in Weng'an County, Southwest China, during the spring (April) and autumn (August) tea seasons via metagenomics and stoichiometric analyses. Seasonal variations significantly altered the soil physicochemical properties (e.g., SOC, TN, and TP) and EEA (p < 0.05), with higher C-acquiring enzyme activity in autumn and elevated soil C:N:P ratios in spring. The soil extracellular enzyme stoichiometry (EES C:N:P) deviated from the theoretical 1:1:1 ratio, indicating that microbial metabolism was constrained by soil resource availability rather than homeostasis. Phosphorus limitation (vector angle > 45°) persisted across seasons, contradicting initial hypotheses, with acid phosphatase (ACP) activity and EES C:P identified as critical drivers. Random forest (RF) and structural equation modeling (SEM) revealed that the spring season had stronger impacts on microbial communities and functional genes, with the soil TN, C:N, NAG, ACP, and EES C:P ratios as key predictors. Compared with conventional practices, organic management enhances microbial diversity and functional redundancy, buffering seasonal fluctuations. These findings highlight the interplay between seasonal climatic shifts and agricultural practices regulating soil nutrient cycling and microbial adaptation. Strategic interventions-such as spring carbon supplementation, autumn organic phosphorus fertilization, and intercropping-are proposed to optimize microbial resilience and ecosystem stability in fragile karst tea plantations. This study provides novel insights into soil ecological stoichiometry and microbial metabolic strategies, offering a reference for the sustainable management of agroecosystems in karst areas.

Differences in Carbon and Nitrogen Cycling Strategies and Regional Variability in Biological Soil Crust Types

Biological soil crusts (BSCs) play a pivotal role in maintaining ecosystem stability and soil fertility in arid and semi-arid regions. However, the biogeographical differences in soil functional composition between cyanobacterial BSCs (C-BSCs) and moss BSCs (M-BSCs), particularly how environmental changes affect nutrient cycling strategies and microbial community functions, remain poorly understood. In this study, we investigated BSCs across aridity gradients (semi-humid, semi-arid, and arid regions) in China, focusing on carbon and nitrogen cycling pathways, enzyme activities, and nutrient acquisition strategies. It was found that aridity and BSC type had significant effects on the functional characteristics of microorganisms. This was demonstrated by significant differences in various soil microbial activities including enzyme activities and carbon and nitrogen nutrient cycling. With increasing aridity, C-BSCs exhibited reduced carbon cycling activity but enhanced nitrogen cycling processes, whereas M-BSCs displayed diminished activity in both carbon and nitrogen cycling. These divergent strategies were linked to soil properties such as pH and organic carbon content, with C-BSCs adapting through nitrogen-related processes (e.g., nifH, amoA) and M-BSCs relying on C fixation and degradation. These findings provide novel insights into the functional gene diversity of BSCs across different regions, offering valuable references for ecological restoration in arid areas. Specifically, our study highlights the potential of BSC inoculation for carbon and nitrogen enrichment in arid regions, with implications for climate-resilient restoration practices.

Regulatory effects of nano-carbon on poplar growth and rhizosphere soil organic carbon accumulation

The positive effects of nano-carbon on plant growth and soil C sequestration within the rhizosphere have been widely recognized. Nevertheless, information is seriously deficient in understanding the underlying mechanisms based on microbial communities and carbon cycle functional genes. Here, metagenomic sequencing was employed to explore different responses of poplar seedling growth and organic carbon fractions to nano-carbon fertilizers at concentrations of 0 ml/kg (CK), 5 ml/kg (NC-5), 10 ml/kg (NC-10) and 20 ml/kg (NC-20). We observed that, after 120 days of nano-carbon fertilizers treatments, the growth indexes (height and biomass) of poplar were significantly increased by 37.83-173.13 %, and C fractions in the rhizosphere soil were significantly increased by 1.64-8.16 % with the NC-5 treatment having a greater impact on organic carbon components than the NC-10 and NC-20 treatments. Compared to CK, the additions of nano-carbon fertilizers significantly increased the content of total nitrogen (TN), nitrate nitrogen (NN), and available potassium (AK) in the rhizosphere soil and decreased the pH, and improved stochastic processes in microbial communities, which elevates the abundance of microbes involved in carbon fixation (e.g., Proteobacteria, Actinobacteria) and carbon-cycling genes. In addition, network complexity and stability of microbes were significantly enhanced by nano-carbon treatments. Structural equation model indicated that microbial community assembly processes directly alter rhizosphere SOC accumulation. Carbon functional genes influenced by microbial structure have positive effects on biomass of poplar and SOC contents. Our observations provide key evidence for evaluating how nano-carbon fertilizers may influence functional changes in C cycle that are mediated by microbial synergy.

Microbial life-history strategies and genomic traits between pristine and cropland soils

Microbial life-history strategies [inferred from ribosomal RNA operon (rrn) gene copy numbers] and associated genomic traits and metabolism potentials in soil significantly influence ecosystem properties and functions globally. Yet, the differences in microbial strategies and traits between disturbed (cropland) and pristine soils, along with their dominant driving factors, remain underexplored. Our large-scale survey of 153 sites, including 84 croplands and 69 pristine soils, combined with long-term field experiments demonstrates that cropland soils support microbial communities with more candidate r-strategies characterized by higher rrn copy numbers and genomic traits conducive to rapid resource utilization. Conversely, pristine soils tend to host communities aligned with more candidate K-strategies marked by high resource use potentials. Elevated nitrogen (N) and phosphorus (P) levels in cropland soils emerge as key factors promoting these candidate r-strategies, overshadowing the influence of organic carbon content, soil structure, or climatic conditions. Results from four long-term field experiments also corroborate that sustained N and P inputs significantly elevate rrn copy numbers, favoring these candidate r-strategists. Our findings highlight that land use and fertilization practices critically shape microbial life-history strategies, with nutrient availability being a decisive factor in increasing the r-strategists in cropland soils.IMPORTANCEMicrobial life-history strategies and genomic traits are key determinants shaping the response of populations to environmental impacts. In this paper, 84 cropland and 69 pristine soil samples were studied, and microorganisms in two ecosystems were categorized into two types of ecological groups using the classical copiotroph-oligotroph dichotomy, promoting a general understanding of the ecological roles of microorganisms. This study is the first to investigate the microbial life-history strategies under different land uses across five climatic zones in China. The results showed that the microbes in cropland soils are more copiotrophic than pristine soils. It also demonstrates that elevated levels of nitrogen and phosphorus in cropland soils are the key factors promoting these r-strategies. This observation emphasizes the critical role of nutrient management in shaping microbial community dynamics and ecosystem functioning and lays the foundation for predicting the response of microbial community composition under resource perturbation.

Roles of the soil microbiome in sustaining grassland ecosystem health on the Qinghai-Tibet Plateau

Soil microbes, as intermediaries in plant-soil interactions, are closely linked to plant health in grassland ecosystems. In recent years, varying degrees of degradation have been observed in the alpine grasslands of the Qinghai-Tibet Plateau (QTP). Addressing grassland degradation, particularly under the influence of climate change, poses a global challenge. Understanding the factors driving grassland degradation on the QTP and developing appropriate mitigation measures is essential for the future sustainability of this fragile ecosystem. In this review, we discuss the environmental and anthropogenic factors affecting grassland degradation and the corresponding impacts on soil microbe community structure. We summarize the current research on the microbiome of the QTP, in particular the effect of vegetation, climate change, grazing, and land use, respectively on the alpine grassland microbiome. The results of these studies indicate that microbially mediated soil bioprocesses are important drivers of grassland ecosystem functional recovery. Therefore, a thorough understanding of the spatial distribution characteristics of the soil microbiome in alpine grasslands is required, and this necessitates an integrated approach in which the interactions among climatic factors, vegetation characteristics, and human activities are evaluated. Additionally, we assess and summarise current technological developments and prospects for applying soil microbiome technologies in sustainable agriculture, including: (i) single-strain inoculation, and (ii) inoculation of synthetic microbial communities, (iii) microbial community transplantation. Grassland restoration projects should be carried out with the understanding that each restoration measure has a unique effect on the soil microbial activity. We propose that the sustainable development of alpine grassland ecosystems can be achieved by adopting advanced microbiome technologies and integrating microbe-based sustainable agricultural practices to maximise grassland biomass, increase soil carbon, and optimise soil nutrient cycling.

Consecutive high-efficient water-saving irrigation increase crop yield and decrease soil salinity through reconstructing rhizosphere soil bacterial communities

Roughly 10 % of the world's arable land is affected by salinization, which significantly reducing crop yields, degrading soil health, and posing a serious threat to food security and ecological stability. High-efficient water-saving irrigation (HEI) technologies have showed positive effects on crop yield, especially with long-term application in salinized soil fields. However, the microbial mechanisms and influential pathways that promote crop yield and reduce salinity under consecutive HEI remain unclear. We conducted a 25-year study of long-term consecutive HEI in typical saline oasis areas, utilizing 16S rRNA high-throughput sequencing and structural equation modeling to analyze the results. The results showed that prolonged application of HEI significantly increased the diversity of soil bacterial community, enhanced the survival rate and yield of cotton, and significantly decreased soil salinity in the cotton fields. Compared with the 1 year application, the diversity indices of soil bacterial communities increased significantly (p < 0.05) by 45.41 %-61.64 %. After 5 years of consecutive HEI, the bacterial network interactions were enhanced. These enhanced interactions significantly (p < 0.005) increased the cotton survival rate by 55.27 % and the yield by 69.99 % after 10 years of application. With the joint positive influence of soil bacterial communities and crop growth after 15-25 consecutive years, soil salinity, the sodium absorption ratio, and the Cl- and SO42- equivalence ratio were significantly (p < 0.005) reduced by 88.01 %-90.00 %, 75.52 %-82.66 %, and 48.39 %-56.66 %, respectively. During the process, Acidobacteriota, Nitrospirota and Myxococcota contributed to higher crop yield mainly via nitrogen fixation, while Bacteroidota and Firmicutes reduced soil salinity primarily via nitrate reduction. Interestingly, Verrucomicrobiota, Nitrospirota, and Desulfobacteria, initially discovered in 5, 10, and 15th years, respectively, reappeared after intervals of 10 years. The diversity, complexity, and stability of the rhizosphere soil bacterial communities continuously improved up to 25 years, significantly (p < 0.005) increasing crop yield and decreasing soil salinity, by 71.55 % and 90.00 %, respectively.

Iron-oxidizing microorganisms affect the iron-bound organic carbon in the subsoil of alpine grassland during the thawing of seasonal frozen soil

Iron (Fe) minerals possess a huge specific surface area and high adsorption affinity, usually considered as "rust tanks" of organic carbon (OC), playing an important role in global carbon storage. Microorganisms can change the chemical form of Fe by producing Fe-chelating agents such as side chains and form a stable complex with Fe(III), which makes it easier for microorganisms to use. However, in seasonal frozen soil thawing, the succession of soil Fe-cycling microbial communities and their coupling relationship with Fe oxides and Fe-bound organic carbon (Fe-OC) remains unclear. We characterized changes in the Fe phase, Fe-OC, Fe-oxidizing bacteria (FeOB), and Fe-reducing bacteria (FeRB) in the subsoil and analyzed the microbial mechanism underlying Fe-OC changes in alpine grassland by constructing a composite structural equation model (SEM). We found that the Fe(III) content consistently exceeded that of Fe(II). Among the three types of Fe oxides, organically complex Fe (Fep) decreased from 2.54 to 2.30 g·kg-1, whereas the opposite trend was observed for poorly crystalline Fe (Feo). The Fe-OC content also decreased (from 10.31 to 9.47 g·kg-1; p < 0.05). Fe-cycling microorganisms were markedly affected by the thawing of frozen soil (except FeRB). Fep and Feo directly affected changes in Fe-OC. Soil moisture (SM) and FeOB were significant indirect factors affecting Fe-OC changes. Freeze-thaw changes in the subsoil of alpine grassland in Central Asia significantly affected FeOB and Fe oxides, thus affecting the Fe-OC content. To the best of our knowledge, this was the first study to examine the influence of Fe-cycling microorganisms on the Fe phase and Fe-OC in the soil of alpine grassland in Central Asia. Overall, our findings provide scientific clues for exploring the biogeochemical cycle process in future climate change.

Active restoration efforts drive community succession and assembly in a desert during the past 53 years

Regreening efforts in deserts have been implemented globally to combat land degradation and desert expansion, but how they affect above- and belowground community succession and assembly processes remains unknown. Here, we examined variations in plant and soil microbial community attributes along a 53-year restoration chronosequence following the establishment of straw checkerboard barriers (SCBs) in the Tengger Desert of China. This approach is a combination of fixing shifting sand and adding organic material (straw) simultaneously to expedite vegetation restoration by enhancing the success of plant establishment. Our findings revealed that the establishment of SCBs significantly triggered plant and soil microbial communities to gradually approximate those of the natural community along restoration duration. We observed positive and negative bidirectional shifts in plant and soil microbial community composition. Critical temporal threshold zones for relatively rapid changes in community composition were identified, with 2-15.5 years for plants, 0.5-8.5 years for bacteria, and 2-8.5 years for fungi. This suggests a delayed response of plant communities to restoration efforts compared with soil microbial communities. Both stochastic and deterministic processes regulated plant and soil microbial community assembly. Stochastic processes played a more important role in plant and fungal community succession, whereas deterministic processes primarily governed bacterial succession. In terms of deterministic processes, temporal variations in community composition mainly resulted from the intrinsic correlations among plant, bacterial, and fungal communities, as well as an increase in soil organic carbon (SOC) with restoration duration. Thus, temporal patterns and functional contributions of bacterial communities appear to be more predictable than those of plant and fungal communities during desert ecosystem restoration. This study emphasizes that plant-bacteria-fungi correlations and increasing SOC content are critical for accelerating community succession and promoting dryland restoration. Future studies should explore and integrate temporal variations and restoration effects of multiple ecosystem functions to better predict dryland development and resilience to global climate changes over a large temporal scale.

Variation of bacterial community diversity and composition in saline-alkali soils reclaimed with flood irrigation and crop cultivation is driven by salinity and edaphic factors

Reclamation is crucial for improving the fertility and productivity of saline-alkali soils, but the evolution of soil bacterial communities during the course of reclamation, which is an important feedback of soil micro-ecosystem, has received little attention. This study was conducted to investigate the variation of bacterial community diversity and composition in reclaimed saline-alkali soils based on space-for-time substitution, elucidate the underlying ecological mechanisms of bacterial community assembly processes, and identify the key driving factors of bacterial community evolution. The soil bacterial communities in undeveloped saline-alkali land and farmlands with different reclamation history (1-4, 5-6, and 10-25 years) in the Yellow River Delta, China, was analyzed by 16S rRNA gene amplicon sequencing. Soil bacterial diversity was found to increase significantly with reclamation history, and the entire bacterial community composition varied remarkably in the saline-alkali soils at different stages of reclamation. Halophilic and halotolerant bacteria dominated in the soils of undeveloped saline-alkali land (33.7 %), but their abundance diminished largely in the reclaimed soils. Analysis of bacterial community assembly processes suggested that heterogeneous selection dominated the change of bacterial communities in the saline-alkali soils that had been reclaimed for 1-4 years (52.8 %), 5-6 years (93.1 %), and 10-25 years (94.4 %). Salinity, soil organic carbon, pH, and moisture content were found to be the key environmental factors driving the evolution of bacterial communities in the reclaimed saline-alkali soils. While salinity directly shaped the bacterial community diversity, the other key drivers primarily governed the composition of bacterial communities in the saline-alkali soils during reclamation. These findings shed light on the probable ecological mechanisms of assembly processes and the environmental factors driving the soil bacterial communities during reclamation of saline-alkali lands, which could help better understand the evolution of soil bacterial communities under declining saline stress and optimize strategies to improve the agroecosystem health of saline-alkali lands.

Nitrogen enrichment stimulates nutrient cycling genes of rhizosphere soil bacteria in the Phoebe bournei young plantations

Anthropogenic nitrogen (N) deposition is expected to increase substantially and continuously in terrestrial ecosystems, endangering the balance of N and phosphorus (P) in P-deficient subtropical forest soil. Despite the widely reported responses of the microbial community to simulated N deposition, there is limited understanding of how N deposition affects the rhizosphere soil processes by mediating functional genes and community compositions of soil bacteria. Here, five levels of simulated N deposition treatments (N0, 0 g m-2·yr-1; N1, 100 g m-2·yr-1; N2, 200 g m-2·yr-1; N3, 300 g m-2·yr-1; and N4, 400 g m-2·yr-1) were performed in a 10-year-old Phoebe bournei plantation. Quantitative microbial element cycling smart chip technology and 16S rRNA gene sequencing were employed to analyze functional gene compositions involved in carbon (C), N, and P cycling, as well as rhizosphere bacterial community composition. N deposition significantly influenced C cycling relative abundance of genes in the rhizosphere soil, especially those involved in C degradation. Low and moderate levels (100-300 g m-2·yr-1) of N deposition promoted the relative abundance of the C decomposition-related genes (e.g., amyA, abfA, pgu, chiA, cex, cdh, and glx), whereas high N deposition (400 g m-2·yr-1) suppressed enzyme (e.g., soil invertase, soil urease, and soil acid phosphatase) activities, affecting the C cycling processes in the rhizosphere. Simulated N deposition affected the functional genes associated with C, N, and P cycling by mediating soil pH and macronutrients. These findings provide new insights into the management of soil C sequestration in P. bournei young plantations as well as the regulation of C, N, and P cycling and microbial functions within ecosystems.

Effect of stand age on rhizosphere microbial community assembly of dominant shrubs during sandy desert vegetation restoration

The rhizosphere microbial community helps govern biogeochemical cycling and facilitates complex plant-soil feedback. Understanding the evolutionary dynamics of microbial community structure and functional genes during vegetation succession is crucial for quantifying and understanding ecosystem processes and functions in restored sandy deserts. In this study, the rhizosphere microbial community structure of 11-66-year-old dominant shrubs in a desert revegetation area was examined using shotgun metagenomic sequencing. The interactions between the microbial community structure, functional gene abundances, soil properties, and plant characteristics of different stand ages were comprehensively investigated. The abundance of unique species first increased before subsequently decreasing with stand age, with shared species accounting for only 47.33%-59.42% of the total operational taxonomic units (OTUs). Copiotrophs such as Actinobacteria and Proteobacteria were found to dominate the rhizosphere soil microbial community, with their relative abundance accounting for 75.28%-81.41% of the total OTUs. There was a gradual shift in dominant microbial functional genes being involved in cellular processes towards those involved in environmental information processing and metabolism as stand age increased. Additionally, temporal partitioning was observed in both the microbial co-occurrence network complexity and topological parameters within the rhizosphere soil. Redundancy analysis revealed that dissolved organic carbon was the primary determinant influencing shifts in microbial community structure. Understanding the evolution of microbial community structure and function contributes to identifying potential mechanisms associating the soil microbiome with dominant sand-fixing shrubs as well as understanding the rhizosphere microbiome assembly process. These results shed light on the role of the rhizosphere microbiome in biogeochemical cycling and other ecosystem functions following revegetation of temperate sandy deserts.

Cadmium and pyrene in the soil modify the properties of earthworm-mediated soil

Earthworms are pivotal in soil ecosystems due to their crucial role in shaping soil characteristics through casts and burrow walls. Previous research has predominantly focused on the direct impact of soil pollution on live earthworms, overlooking the subsequent effects on earthworm-mediated soil, such as casts and burrow walls. Using 2D-terraria as incubation containers and the geophagous earthworm species Metaphire guillelmi, this study assessed the change in various properties of earthworm-mediated soil in both uncontaminated soils and Cd- and Pye-contaminated soils. Overall, both Cd and Pye overall improved the ammonium nitrogen (NH4+-N), Olsen's phosphorus (Olsen-P) levels, and invertase and catalase activities while decreasing catalase activities in earthworm-mediated soil. They also fluctuating affected the pH, soil organic matter (SOM) content, soil urease, alkaline phosphatase activities, and microbial functional genes in the cast and burrow walls. These results indicated that earthworms remained crucial "ecosystem engineers" even in polluted soil. Additionally, differences were observed in the responses of properties between casts and burrow walls, showing unequal contributions of transit-through-gut and burrowing processes to soil modification. Specifically, transit-through-gut was found to have a more significant influence on soil NH4+-N and Olsen-P content compared to burrowing behavior. Regarding the pattern of microbial functional genes in earthworm-associated compartments, results revealed that they differed significantly in casts from those in bulk soil and burrow walls under unpolluted conditions, with pollution-enhancing disparities among compartments. Furthermore, NH4+-N and Olsen-P content, urease, and catalase activities in burrow walls and/or casts were identified as potential biomarkers for soil pollution, exhibiting a clear dose-effect relationship. Developing such biomarkers could address ethical concerns related to conventional earthworm biomarkers that require sacrificing earthworms. This study provides insights into the consequences of soil pollution on earthworm-mediated soil components, highlighting the importance of considering the indirect effects of contaminants on soil ecosystems.

Effects of salt stress on the rhizosphere soil microbial communities of Suaeda salsa (L.) Pall. in the Yellow River Delta

Studies have shown that the microbiome of saline-tolerant plants plays a significant role in promoting salt stress in non-saline-tolerant plants, but the microorganisms are still unclear. In the present study, the microbial diversity changes in Suaeda salsa (L.) Pall. in the Yellow River Delta region were investigated. In the bacterial community, the dominant bacteria in the rhizosphere soil of the low-saline soil (YDL), moderate-saline soil (YDM), and high-saline soil (YDH) groups were Proteobacteria, Chloroflexi, Bacteroidota, and Actinobacteriota (at the phylum level), while Ascomycota and Basidiomycota were the dominant fungi in the fungal community. At the family level, with the increase of salinity, the relative abundance of Rhodobacteraceae (bacterial community), Thermoascaceae, and Phaffomycetaceae (fungal community) gradually increased; and to the best of our knowledge, there are no reports on the relationship between Thermoascaceae and Phaffomycetaceae families with salt stress. At the genus level, Salinimicrobium (bacterial community) was the dominant bacterium in the rhizosphere soil of the YDL, YDM, and YDH groups, while with the increase of salinity, the relative abundance of Byssochlamys and Wickerhamomyces (fungal community) gradually increased, and to the best of our knowledge there are no reports on the relationship between Byssochlamys and salt stress. Salinity mainly affected the bacterial community abundance, but it had little effect on the fungi community abundance. The bacterial community of the YDH group was dominated by bacteria of unknown origin (52.76%), while bacteria of unknown origin accounted for 26.46% and 20.78% of the bacterial communities in the YDM and YDL groups, respectively. The fungi community of the YDH group was dominated by YDL group fungi (relative abundance of 44.44%), followed by YDM group fungi (29.42%) and fungi of unknown origin (26.14%). These results provide a better understanding of the rhizosphere microbial diversity of saline-alkali-tolerant plants, laying a foundation for developing a saline-alkali-tolerant plant microbiome.

The Response of Rhizosphere Microbial C and N-Cycling Gene Abundance of Sand-Fixing Shrub to Stand Age Following Desert Restoration

Rhizosphere microorganisms play a pivotal role in biogeochemical cycles, particularly in relation to carbon (C) and nitrogen (N) cycles. However, the impact of stand age on the composition of rhizosphere microbial communities and the abundance involved in C and N cycling remains largely unexplored in restoration ecosystems dominated by shrubs of temperate deserts. This study focuses on revealing changes in microbial composition and functional genes in the rhizosphere soil of Caragana korshinskii after revegetation, as well as their response mechanisms to changes in environmental factors. The alpha diversity of bacteria tended to increase with stand age, whereas that of fungi decreased. The abundance of denitrification; dissimilatory nitrate reduction to ammonium, nitrification, and ammonium assimilation; and C fixation-related gene levels increased with stand age, whereas those related to the degradation of starch, pectin, hemicellulose, cellulose, and aromatics decreased. The parameters MBC, MBN, and TC were the key factors affecting the bacterial community, whereas the fungal community was regulated by TN, EC, pH, and MBC. Stand age indirectly regulated C and N cycling functions of genes through altered soil properties and microbial community structures. This study presents a novel approach to accurately evaluate the C and N cycling dynamics within ecosystems at various stages of restoration.

Plants Restoration Drives the Gobi Soil Microbial Diversity for Improving Soil Quality

Desertification and salt stress are major causes of terrestrial ecosystem loss worldwide, and the Gobi, representing a salt-stressed area in inland China, has a major impact on the ecosystems and biodiversity of its surrounding environment. The restoration of the Gobi Desert is an important way to control its expansion, but there are few studies on the evaluation of restoration. In this study, soils under different restoration scenarios, namely, soils in restored areas (R1, R2), semi-restored areas (SR1, SR2), and unrestored control areas (C1, C2), were used to investigate differences in microbial diversity and physicochemical properties. The results showed that the soil was mainly dominated by particles of 4-63 μm (26.45-37.94%) and >63 μm (57.95-72.87%). Across the different restoration levels, the soil pH (7.96-8.43) remained basically unchanged, salinity decreased from 9.23-2.26 to 0.24-0.25, and water content remained constant (10.98-12.27%) except for one restored sample in which it was higher (22.32%). The effective Al, Cu, and Zn in the soil increased, but only slightly. Total organic matter (TOM) decreased from 3.86-5.20% to 1.31-1.47%, and total organic nitrogen (TON) decreased from 0.03-0.06% to 0.01-0.02%, but the difference in total organic carbon (TOC) was not significant. High-throughput testing revealed that the bacterial population of the restored area was dominated by A4b (6.33-9.18%), MND1 (4.94-7.39%), and Vicinamibacteraceae (7.04-7.39%). Regarding archaea, samples from the restored areas were dominated by Marine Group II (76.17-81.49%) and Candidatus Nitrososphaera (6.07-9.75%). PCoA showed that the different restoration levels were the main cause of the differences between the samples. Additionally, salinity was the dominant factor that induced this difference, but it was inhibited by the restoration and targeted enrichment of some of these functional genera. Desert restoration should therefore focus on conserving water rather than adding nutrients. Planting salt- and drought-tolerant vegetation will contribute to the initial restoration of the desert and the restoration of the microbiological content of the soil as it migrates over time, creating a cycle of elements. Restoration stimulates and enhances the microbial diversity of the soil via beneficial microorganisms.

Artemisia smithii patches form fertile islands and lead to heterogeneity of soil bacteria and fungi within and around the patches in alpine meadows of the Qinghai-Tibetan Plateau

Herbivore-avoided plant patches are one of the initial characteristics of natural grassland degradation. These vegetation patches can intensify the spatial heterogeneity of soil nutrients within these grasslands. However, the effects of non-edible plant patches patches on the spatial heterogeneity of microorganisms have not been sufficiently studied in alpine meadows of the Qinghai-Tibetan Plateau, especially patches formed by herbaceous plants. To answer this question, soil nutrients, plant assembly, and microbial communities were measured inside, around, and outside of Artemisia smithii patches. These were 0 m (within the patch), 0-1 m (one meter from the edge of the patch), 1-2 m (two meters from the edge of the patch), 2-3 m (three meters from the edge of the patch), and >30 m (non-patch grassland more than thirty meters from the edge of the patch). Our results showed that A. smithii patches accumulated more aboveground biomass (AGB) within the patches (0 m), and formed fertile islands with the soil around the patches. Additionally, A. smithii patches increased soil bacterial diversity within (0 m) and around (0-1 m) the patches by primarily enriching copiotrophic bacteria (Actinobacteria), while the diversity of fungal communities increased mainly in the 0-1 m area but not within the patches. Bacterial community diversity was driven by pH, urease, nitrate nitrogen (NO3 --N), and microbial biomass carbon (MBC). The contents of soil water (SWC), soil organic matter (SOM), urease, NO3 --N, and MBC were the main factors influencing the diversity of the fungal community. This study elucidates the vegetation, nutrients, and microbial heterogeneity and their interrelationships, which are observed in fertile islands of herbivore-avoided plant patches in alpine meadows, and provides further insights into the spatial pattern of nutrients in patchy degraded grasslands.

Long-term vegetation restoration promotes lignin phenol preservation and microbial anabolism in forest plantations: Implications for soil organic carbon dynamics

Vegetation restoration contributes to soil organic carbon (C; SOC) sequestration through the accumulation of plant and microbial residues, but the mechanisms underlying this microbially mediated process are not well resolved. To depict the dynamics of plant- and microbial-derived C in restored forest ecosystems, soil samples were collected from Robinia pseudoacacia plantations of different stand ages (15, 25, 35, 45 years old) established on degraded wheat fields. The results showed that the degree of lignin phenol oxidation decreased with increasing stand age (P < 0.05), and hemicellulose-degrading genes were detected at higher relative abundances than other functional gene categories, indicating selective preservation of recalcitrant lignin phenols. Despite both glucosamine (R2 = 0.61, P < 0.001) and muramic acid (R2 = 0.37, P < 0.001) contents trending upward over time, fungal residual C accounted for a greater proportion of SOC compared with bacterial residual C. Accordingly, fungal residual C, which exhibited a similar response pattern as total microbial residual C to vegetation restoration, was considered a major contributor to the SOC pool. These results provided evidence that long-term vegetation restoration enhanced SOC sequestration in R. pseudoacacia forest by promoting the preservation of plant-derived lignin phenols and concomitant microbial anabolism. Partial least squares-discriminant analysis identified two important ecological clusters (i.e., modules) in the fungal network that profoundly influenced lignin phenol oxidation (P < 0.05) and microbial residual C accumulation (P < 0.01). Among the dominant taxa in microbial networks, the bacterial phyla Proteobacteria and Acidobacteriota had potential to degrade recalcitrant C compounds (e.g., cellulose, lignin), whereas the fungal phylum Ascomycota could outcompete for labile C fractions (e.g., dissolved organic C). Findings of this study can enable a mechanistic understanding of SOC stability driven by microbial turnover in restored forest ecosystems.

Vegetation restoration in an alpine meadow: Insights from soil microbial communities and resource limitation across soil depth

Aboveground vegetation restoration shapes the soil microbial community structure and affects microbial resource acquisition. However, the changes in soil microbial resource limitation in subsoil during vegetation restoration are still unclear. In this study, the microbial community structure and resource limitation in an alpine meadow soil profile that had undergone natural restoration for short-term (4-year) and long-term (10-year) restoration in response to vegetation restoration were explored through high-throughput sequencing analysis and extracellular enzyme stoichiometry (EES). There was no significant difference in microbial composition and α diversity between short- and long-term restoration soils. Soil microorganisms in this alpine meadow were mainly limited by phosphorus. Carbon limitation of soil microorganisms was significantly decreased in each layer (0-15, 15-30, 30-45, 45-60, and 60-80 cm corresponding to L1, L2, L3, L4, and L5, respectively) of long-term restoration soils when compared to that of the short-term restoration soil layers, while phosphorus limitation of microorganisms in subsoil (60-80 cm) was significantly increased by 17.38%. Soil nutrients, pH, moisture content, and microbial composition are the main drivers of microbial resource limitation in restoration, and their effects on microbial resource limitation were different in short- and long-term restoration. Meanwhile, key microbial taxa have a significant impact on microbial resource limitation, especially in short-term restoration soils. This study suggested that vegetation restoration significantly affected soil microbial resource limitation, and could alleviate microbial resource limitations by adding nutrients, thus accelerating the process of vegetation restoration in alpine ecosystems.

Synthetic Microbial Community Promotes Bacterial Communities Leading to Soil Multifunctionality in Desertified Land

Soil desertification is an important challenge in global soil management, and effectively and stably restoring soil function is an urgent problem. Using synthetic microbial communities (SynComs) is a burgeoning microbial strategy aimed at enhancing soil nutrients through functional synergies among diverse microorganisms; nevertheless, their effectiveness in restoring desertified soils remains unknown. In this study, we conducted a two-year field experiment using a SynCom constructed by in situ probiotic bacteria and set up control, chemical fertilizer, and combined SynCom-chemical fertilizer (combined fertilizer) treatments to investigate the linkage between microbial communities and soil multifunctionality in the soil surface layer (0-10 cm). Both the bacterial and fungal communities differed the most under the combined fertilizer treatment compared to the control. The bacterial communities differed more under treatments of the SynCom than the chemical fertilizer, while the fungal communities differed more under the chemical fertilizer treatment than the SynCom treatment. Regarding soil function, the SynCom strengthened the correlation between enzyme activities and both bacterial communities and functional properties. pH and available potassium were the main influencing factors under the chemical fertilizer and combined fertilizer treatments. The beta-diversity of the bacterial communities was significantly correlated with soil multifunctionality. Random forest analyses showed that the SynCom significantly enhanced the bacterial communities, driving soil multifunctionality, and that some potential microbial taxa drove multiple nutrient cycles simultaneously. In summary, the SynCom effectively increased the abundance of most carbon, nitrogen, and phosphorus functional genes as well as soil enzyme activities. The bacterial community composition contributed significantly to soil multifunctionality. Hence, the development of novel microbial agents holds significant potential for improving soil functionality and managing desertification.

Leaf carbon chemistry effectively manipulated soil microbial profiles and induced metabolic adjustments under different revegetation types in the loess Plateau, China

Microorganisms are essential components of underground life systems and drive elemental cycling between plants and soil. Yet, in the ecologically fragile Loess Plateau, scant attention has been paid to the response of microbial communities to organic carbon (C) chemistry of both leaves and soils under different revegetation conditions, as well as subsequent alternation in their C metabolic functions. Here, Fourier transform infrared (FTIR) spectrum, amplicon sequencing of 16S rRNA and ITS, and temporal incubation with Biolog-Eco 96 plates were combined to explore the vegetative heterogeneity of microbial community properties and metabolic functions, as well as their regulatory mechanisms in three typical revegetation types including Robinia pseudoacacia L. (RF), Caragana korshinskii KOM. (SL), and abandoned grassland (AG). We observed higher bacterial-to-fungal ratios (B: F = 270.18) and richer copiotrophic bacteria (Proteobacteria = 33.08%) in RF soil than those in AG soil, suggesting that microbes were dominated by r-strategists in soil under RF treatment, which is mainly related to long-term priming of highly bioavailable leaf C (higher proportion of aromatic and hydrophilic functional groups and lower hydrophobicity). Conversely, microbial taxa in AG soil, which was characterized by higher leaf organic C hydrophobicity (1.39), were dominated by relatively more abundant fungi (lower B: F ratio = 149.49) and oligotrophic bacteria (Actinobacteria = 29.30%). The co-occurrence network analysis showed that microbial interactive associations in RF and AG soil were more complex and connective than in SL soil. Furthermore, Biolog-Eco plate experiments revealed that microorganisms tended to utilize labile C compounds (carbohydrates and amino acids) in RF soil and resistant C compounds (polymers) in AG soil, which were consistent with the substrate adaptation strategies of predominant microbial trophic groups in different revegetation environments. Meanwhile, we observed greater microbial metabolic activity and diversity advantages in RF vegetation. Collectively, we suggest that besides the nutrient variables in the leaf-soil system, the long-term regulation of the microbial community by the C chemistry of the leaf sequentially alters the microbial metabolic profiles in a domino-like manner. RF afforestation is more conducive to restoring soil microbial fertility (including microbial abundance, diversity, interactive association, and metabolic capacity). Our study potentially paves the way for achieving well-managed soil health and accurate prediction of C pool dynamics in areas undergoing ecological restoration of the Loess Plateau.

Fungal, but not bacterial, diversity and network complexity promote network stability during roadside slope restoration

To restore degraded roadside ecosystems, conventional methods such as revegetation and soil amendment are frequently employed. However, our understanding of the long-term effects of these restoration approaches on soil microbial diversity and network complexity across different vegetation types remains poor, which contributes to poor restoration outcomes. In this study, we explored the effects of roadside slope restoration on microbial communities across different vegetation types at varying stages of restoration. We found that restoration time had a more pronounced impact on microbial diversity than specific vegetation type. As restoration progressed, microbial network complexity and fungal diversity increased, but bacterial diversity declined, suggesting that keystone taxa may contribute to network complexity. Interestingly, bacterial network complexity increased concomitant with decreasing network modularity and robustness, which may compromise system stability. Distinct vegetation types were associated with restoration-sensitive microbial communities at different restoration stages. Leguminouse and nitrogen-fixing plants, such as Albiziak alkora, Ginkgo biloba, Rhus chinensis, Rhapis excels, and Rubia cordifolia exhibited such associations after five years of restoration. These keystone taxa included Proteobacteria, Actinobacteria, Chloroflexi, Gemmatimonadota, and Myxococcota. We also found that bacterial alpha diversity was significantly correlated with restoration time, soil pH, moisture, available phosphate, nitrate nitrogen, and plant height, while fungal diversity was primarily shaped by restoration time. Together, our findings suggest that soil properties, environmental factors, vegetation type, and dominant species can be manipulated to guide the trajectory of ecological recovery by regulating the abundance of certain microbial taxa.

Urea fertilization increased CO2 and CH4 emissions by enhancing C-cycling genes in semi-arid grasslands

Global climate change is predicted to increase exogenous N input into terrestrial ecosystems, leading to significant changes in soil C-cycling. However, it remains largely unknown how these changes affect soil C-cycling, especially in semi-arid grasslands, which are one of the most vulnerable ecosystems. Here, based on a 3-year field study involving N additions (0, 25, 50, and 100 kg ha-1 yr-1 of urea) in a semi-arid grassland on the Loess Plateau, we investigated the impact of urea fertilization on plant characteristics, soil properties, CO2 and CH4 emissions, and microbial C cycling genes. The compositions of genes involved in C cycling, including C fixation, degradation, methanogenesis, and methane oxidation, were determined using metagenomics analysis. We found that N enrichment increased both above- and belowground biomasses and soil organic C content, but this positive effect was weakened when excessive N was input (N100). N enrichment also altered the C-cycling processes by modifying C-cycle-related genes, specifically stimulating the Calvin cycle C-fixation process, which led to an increase in the relative abundance of cbbS, prkB, and cbbL genes. However, it had no significant effect on the Reductive citrate cycle and 3-hydroxypropionate bi-cycle. N enrichment led to higher soil CO2 and CH4 emissions compared to treatments without added N. This increase showed significant correlations with C degradation genes (bglA, per, and lpo), methanogenesis genes (mch, ftr, and mcr), methane oxidation genes (pmoA, pmoB, and pmoC), and the abundance of microbial taxa harboring these genes. Microbial C-cycling genes were primarily influenced by N-induced changes in soil properties. Specifically, reduced soil pH largely explained the alterations in methane metabolism, while elevated available N levels were mainly responsible for the shift in C fixation and C degradation genes. Our results suggest that soil N enrichment enhances microbial C-cycling processes and soil CO2 and CH4 emissions in semi-arid ecosystems, which contributes to more accurate predictions of ecosystem C-cycling under future climate change.

Molecular insight into the vertical migration and degradation of dissolved organic matter in riparian soil profiles

Due to the molecular complexity of dissolving organic matter (DOM), the vertical molecular distribution of riparian soil DOM (especially dissolved organic nitrogen (DON) and dissolved organic phosphorus (DOP)) in different land use types and their relationship with the bacterial community is still unclear. This study analyzed the spectral characteristics of riparian soil DOM from 0 to 100 cm in wild grassland, agricultural land, and bare land. The molecular distribution of DOM was revealed through Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR MS) and the specific relationship between DOM and bacterial community composition (BCC) was evaluated. The results showed that the DOM in the upper soil layer (0-40 cm) was mainly composed of recalcitrant macromolecular organics, while that in the lower layer (40-100 cm) was labile small molecular organics. In agricultural land, the total storage of DOM was lower than that in wild grassland, but with a higher abundance of recalcitrant organic carbon (lignin, etc.). At the same time, the bacterial community in agricultural land is shifting towards copiotrophs. In addition, the abundance of labile C degrading genes increases with nitrate as the main electron acceptor. However, sulfates are mainly used as electron acceptors in wild grasslands. Both DOP and DON were dominated by lignin and displayed higher chemical diversity in the upper soil. The bioavailability of DOP in three types of soil is higher than that of DON. DOM-BCC network analysis shows that the recalcitrant DON and DOP molecules in soil are positively correlated with phylum Actinobacteriota in agricultural land. These results emphasize that the DOM molecular characteristics were closely related to the function of the soil bacterial community.

Fungal community composition changes and reduced bacterial diversity drive improvements in the soil quality index during arable land restoration

Arable land is facing the growing challenge of land degradation due to intensive use and this is beginning to affect global food security. However, active and passive restoration can improve soil characteristics and reshape microbial communities. Despite the increasing focus on changes in microbial communities during restoration, the mechanisms underlying how microbes drive the soil quality index (SQI) in arable land restoration remain unclear. In this study, we selected conventional farmland (CF, heavily intensified) and two restoration strategies (AR, artificial restoration; NR, natural restoration), with the same context (including soil texture, climate, etc.), and measured the microbial indicators over 2 years to investigate the mechanisms driving SQI improvement on restored arable land. The AR and NR treatments resulted in a 50% and 58% increase in SQI, respectively, compared to CF as soil nutrient levels increased, resulting in higher microbial biomasses and enzyme activities. Microbial abundance on the AR land was approximately two times greater than on the NR land due to the introduction of legumes. Bacterial diversity declined, while fungi developed in a more diverse direction under the restoration strategies. The AR and NR areas were mainly enriched with rhizobium (Microvirga, Bradyrhizobium), which contribute to healthy plant growth. The pathogenic fungi (Gibberella, Fusarium, Volutella) were more abundant in the CF area and the plant pathogen guild was about five times higher in the restored areas. Following arable land restoration, microbial life history strategies shifted from r-to K-strategists due to the higher proportion of recalcitrant SOC (DOC/SOC decreased by 18%-30%). The altered microbial community in the restored areas created new levels of functionality, with a 2.6%-4.3% decrease in bacterial energy metabolism (oxidative phosphorylation, C fixation, and N metabolism decreased by 7%, 4%, and 6%, respectively). Structural equation modelling suggested that restoration strategy affected SQI either directly by increasing total soil nutrient levels or indirectly by altering the microbial community and that fungal community composition and bacterial diversity made the largest contributions to SQI. These results provided new insights into soil quality improvement from a microbial perspective and can help guide future arable land restoration.

Seasonal changes in N-cycling functional genes in sediments and their influencing factors in a typical eutrophic shallow lake, China

N-cycling processes mediated by microorganisms are directly linked to the eutrophication of lakes and ecosystem health. Exploring the variation and influencing factors of N-cycling-related genes is of great significance for controlling the eutrophication of lakes. However, seasonal dynamics of genomic information encoding nitrogen (N) cycling in sediments of eutrophic lakes have not yet been clearly addressed. We collected sediments in the Baiyangdian (BYD) Lake in four seasons to explore the dynamic variation of N-cycling functional genes based on a shotgun metagenome sequencing approach and to reveal their key influencing factors. Our results showed that dissimilatory nitrate reduction (DNRA), assimilatory nitrate reduction (ANRA), and denitrification were the dominant N-cycling processes, and the abundance of nirS and amoC were higher than other functional genes by at least one order of magnitude. Functional genes, such as nirS, nirK and amoC, generally showed a consistent decreasing trend from the warming season (i.e., spring, summer, fall) to the cold season (i.e., winter). Furthermore, a significantly higher abundance of nitrification functional genes (e.g., amoB, amoC and hao) in spring and denitrification functional genes (e.g., nirS, norC and nosZ) in fall were observed. N-cycling processes in four seasons were influenced by different dominant environmental factors. Generally, dissolved organic carbon (DOC) or sediment organic matter (SOM), water temperature (T) and antibiotics (e.g., Norfloxacin and ofloxacin) were significantly correlated with N-cycling processes. The findings imply that sediment organic carbon and antibiotics may be potentially key factors influencing N-cycling processes in lake ecosystems, which will provide a reference for nitrogen management in eutrophic lakes.

Magnetic biochar accelerates microbial succession and enhances assimilatory nitrate reduction during pig manure composting

Biochar promotes microbial metabolic activities and reduces N2O on aerobic composting. However, the effects of magnetic biochar (MBC) on the microbial succession and N2O emissions during pig manure composting remain unclear. Herein, a 42-day composting experiment was conducted with five treatment regimes: pig manure without biochar (CK), 5 % pig manure-based biochar (5 % PBC), 2 % MBC (2 % MBC), 5 % MBC (5 % MBC) and 7.5 % MBC (7.5 % MBC)), to clarify the variation in functional microorganisms and genes associated with nitrogen and direct interspecies electron transfer via metagenomics. Fourier-transform infrared spectroscopy showed that MBC possessed more stable aromatic structures than pig manure-based biochar (PBC), indicating its greater potential for nitrous oxide reduction. MBC treatments were more effective in composting organic matter and improving the carbon/nitrogen ratio than PBC. The microbial composition during composting varied significantly, with the dominant phyla shifting from Firmicutes to Proteobacteria, Actinobacteria, and Bacteroidota. Network and hierarchical clustering analyses showed that the MBC treatment enhanced the interactions of dominant microbes (Proteobacteria and Bacteroidota) and accelerated the composting process. The biochar addition accelerated assimilatory nitrate reduction and slowed dissimilatory nitrate reduction and denitrification. The Mantel test demonstrated that magnetic biochar potentially helped regulate composting nutrients and affected functional nitrogen genes. These findings shed light on the role of MBC in mitigating greenhouse gas emissions during aerobic composting.

Effective microorganisms input efficiently improves the vegetation and microbial community of degraded alpine grassland

Soil beneficial microorganism deficiency in the degraded grasslands have emerged as the major factors negatively impacting soil quality and vegetation productivity. EM (effective microorganisms) has been regarded as a good ameliorant in improving microbial communities and restoring degraded soil of agricultural systems. However, knowledge was inadequate regarding the effects of adding EM on the degraded alpine grassland. Four levels of EM addition (0, 150, 200, 250 mL m-2) were conducted to investigate the effects of EM addition on soil properties and microorganisms of degraded alpine grassland. The addition of EM increased aboveground biomass, soil organic carbon, total nitrogen, available phosphorus, and microbial biomass, but decreased soil electric conductivity. Meanwhile, the relative biomasses of gram-negative bacteria decreased, while the ectomycorrhizal fungi and arbuscular mycorrhizal fungi increased after EM addition. The relationship between microbial communities and environmental factors has been changed. The restore effect of EM increased with the increase of addition time. These results indicated that EM addition could be a good practice to restore the health of the degraded alpine grassland ecosystem.

Land abandonment transforms soil microbiome stability and functional profiles in apple orchards of the Chinese Losses Plateau

Land abandonment is considered an effective strategy for ecological restoration on a global scale. However, few studies have focused on how environmental heterogeneity associated with the age of land abandonment affects the assembly and potential functions of the soil microbial community. In the present study, we investigated the community assembly of soil bacteria and fungi as well as the stability of soil networks and their potential functions in the chronosequence of abandoned apple orchards. We elucidated that the Shannon diversity of bacteria and the richness of fungi increased as land abandonment progressed. In addition, land abandonment destabilized the microbial network stability but increased network complexity. Soil available nitrogen, total carbon, and moisture are the potentially important factors in shaping the soil microbial assembly. Importantly, we showed that the microbial community diversity and functional diversity presented a synchronization effect in response to the different stages of land abandonment. Furthermore, specific bacterial taxa related to carbon fixation, dissimilatory nitrate reduction, and organic phosphorus mineralization were significantly enriched during the early abandonment stage. Collectively, these results indicate that land abandonment significantly transformed soil microbiome assembly and functional adaptation during the restoration process. These findings provide valuable insights into the influence of ecological restoration on soil microbiome and ecosystem functions in arable areas.

Macrofungi promote SOC decomposition and weaken sequestration by modulating soil microbial function in temperate steppe

Soil organic carbon (SOC) sequestration is a key grassland ecosystem function, and the magnitude of SOC reservoirs depends on microbial involvement, especially that of fungi. Mycelia developed by macrofungi potentially influence carbon (C) fixation and decomposition; however, the mechanisms underlying their effects on SOC storage in grassland ecosystems remain poorly understood. The fairy rings formed by macrofungi in grasslands are natural platform for exploring macrofungal effects on SOC. In this study, we collected topsoil (0-10 cm) from four different fairy ring zones in a temperate steppe to reveal the macrofungal effects on SOC fractions, including particulate organic carbon (POC) and mineral-associated organic carbon (MAOC), and the SOC storage microbial mechanism using metagenomic sequencing technology. Both POC and MAOC decreased after macrofungal passage, resulting in a 7.37 % reduction in SOC. Macrofungal presence reduced microbial biomass carbon (MBC), but significantly enhanced the β-1,4-glucosidase (BG) activity, which increased dissolved organic carbon (DOC). In addition, the abundance of copiotrophs (Proteobacteria and Bacteroidetes) with lower C metabolic rates increased, and that of oligotrophs (Actinobacteria, Acidobacteria, Chloroflexi, and Verrucomicrobia) with higher substrate utilization efficiency decreased in the presence of macrofungi. This may further promote SOC decomposition. Correspondingly, there was a lower abundance of C-fixation genes but more C-degradation genes (especially hemicellulosic degradation genes) during macrofungal passage. Our results indicate that the presence of macrofungi can modulate the soil microbial community and functional genes to reduce SOC storage by inhibiting microbial C sequestration while promoting C decomposition in grassland ecosystems. These findings refine our mechanistic understanding of SOC persistence through the interactions between macrofungi and other microbes.

Effects of grazing and nitrogen application on greenhouse gas emissions in alpine meadow

Overgrazing and injudicious nitrogen applications have increased emissions of greenhouse gases from grassland ecosystems. To explore the effects and potential mechanisms of grazing, nitrogen application, and their interaction with greenhouse gas (GHG) emissions, field experiments were conducted on the Qinghai-Tibet Plateau for three consecutive years. Alpine meadow plots were subjected to light (8 sheep ha^-1) and heavy (16 sheep ha^-1) stocking rates, with or without ammonium nitrate (NH₄NO₃) (90 kg N ha^-1 yr^-1) treatment to simulate soil nitrogen deposition. During early warm growth season (May-June), peak growth season (July-September), and early cold season (October-November), static-chamber gas chromatography was used to analyze the soil's greenhouse gas emissions (CO₂, N₂O, and CH₄). Results indicated that light stocking rate (LG) led to an increase in cumulative CO₂ and N₂O emissions, while also promoting CH₄ uptake. Conversely, heavy stocking rate (HG) produced contrasting outcomes. Additionally, nitrogen applications significantly increased the short-term CO₂ and N₂O fluxes peaks. Combined treatment of nitrogen application and light stocking rate (LG + N) resulted in increased CO₂ and N₂O emissions while decreased CH₄ uptake, consequently leading to a significant increase in global warming potential. According to the structural equation model, we discovered that nitrogen application and grazing affected GHG fluxes both directly and indirectly through their impact on the environmental factors. Our findings suggest that in the context of increasing nitrogen deposition in the Qinghai-Tibet Plateau, a moderate increase in stocking rate is more effective than reducing grazing intensity for mitigating global warming potential in alpine meadow.

Progress of Ecological Restoration Research Based on Bibliometric Analysis

With the deterioration of the global/regional ecological environment, ecological restoration plays an important role in sustainable development. However, due to the differences in research methods, objectives, and perspectives, the research results are highly diverse. This makes it necessary to sort the publications related to ecological restoration, clarify the research status, grasp the research hotspots, and predict the future research trends. Here, 23,755 articles from the core database of Web of Science were retrieved, and bibliometric analysis was carried out to understand the global ecological restoration research progress from 1990 to 2022 from a macro perspective, with the aim to determine the future development direction. The results are as follows. (1) From 1990 to 2022, the number of publications in the field of ecological restoration constantly increased, and the fluctuation of the average annual citations increased. The most important articles were published in high-ranking journals. (2) Ecological restoration covers a wide range of research areas, including biodiversity, ecosystem services, climate change, land use, and ecological restoration theories and technologies. The four main hotspots in this field are heavy metal removal, soil microbial biomass carbon and nitrogen concentrations, grassland ecological restoration, and evaluation framework and modeling of ecological restoration's effects. Currently, studies focus on river basin remediation, heavy metal removal, and forest restoration. (3) Future ecological restoration research should strengthen the multi-object aspect and multi-scale ecological restoration research, improve the ecological restoration effect evaluation system, and incorporate social and economic issues. This study identified current research hotspots and predicted potential future research directions, providing a scientific reference for future studies in the field of ecological restoration.