1
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Krishnan A, Kim D, Jaye C, Alamgir FM. Anion Activity and Metastable Phase Formation in Li 1-x FePO 4 Investigated Using Soft-to-Hard X-ray Absorption and Emission Spectroscopy. ACS MATERIALS LETTERS 2025; 7:1956-1962. [PMID: 40343142 PMCID: PMC12056757 DOI: 10.1021/acsmaterialslett.4c02389] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/21/2024] [Revised: 04/14/2025] [Accepted: 04/15/2025] [Indexed: 05/11/2025]
Abstract
We systematically investigate the intricate roles of cations as well as anions during phase transformation, specifically, the formation of a metastable phase in phospho-olivine, LiFePO4 (LFP). The cation- and anion-specific electronic structures are studied using a combination of high-resolution soft-to-hard X-ray absorption and emission spectroscopy. Our findings reveal that the formation of the metastable phase at higher states-of-charge (SoC) is associated with a decreased oxidation state of iron, assisted by oxygen release. Additionally, we find that phosphorus is active in the charge process, exhibiting reduction, resulting from an electron density redistribution between oxygen and its neighboring iron and phosphorus atoms. Furthermore, the phase transformation process in LFP impacts its magnetic properties, with iron retaining its high-spin configuration along with an increased average spin during its transformation into FePO4 (FP).
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Affiliation(s)
- Abiram Krishnan
- School
of Materials Science and Engineering, Georgia
Institute of Technology, Atlanta, Georgia 30332, United States
| | - Doyoub Kim
- School
of Materials Science and Engineering, Georgia
Institute of Technology, Atlanta, Georgia 30332, United States
| | - Cherno Jaye
- Material
Measurement Laboratory, National Institute
of Standards and Technology, Gaithersburg, Maryland 20899, United States
| | - Faisal M Alamgir
- School
of Materials Science and Engineering, Georgia
Institute of Technology, Atlanta, Georgia 30332, United States
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2
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Baerends EJ, Aguirre NF, Austin ND, Autschbach J, Bickelhaupt FM, Bulo R, Cappelli C, van Duin ACT, Egidi F, Fonseca Guerra C, Förster A, Franchini M, Goumans TPM, Heine T, Hellström M, Jacob CR, Jensen L, Krykunov M, van Lenthe E, Michalak A, Mitoraj MM, Neugebauer J, Nicu VP, Philipsen P, Ramanantoanina H, Rüger R, Schreckenbach G, Stener M, Swart M, Thijssen JM, Trnka T, Visscher L, Yakovlev A, van Gisbergen S. The Amsterdam Modeling Suite. J Chem Phys 2025; 162:162501. [PMID: 40260801 DOI: 10.1063/5.0258496] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2025] [Accepted: 03/28/2025] [Indexed: 04/24/2025] Open
Abstract
In this paper, we present the Amsterdam Modeling Suite (AMS), a comprehensive software platform designed to support advanced molecular and materials simulations across a wide range of chemical and physical systems. AMS integrates cutting-edge quantum chemical methods, including Density Functional Theory (DFT) and time-dependent DFT, with molecular mechanics, fluid thermodynamics, machine learning techniques, and more, to enable multi-scale modeling of complex chemical systems. Its design philosophy allows for seamless coupling between components, facilitating simulations that range from small molecules to complex biomolecular and solid-state systems, making it a versatile tool for tackling interdisciplinary challenges, both in industry and in academia. The suite also emphasizes user accessibility, with an intuitive graphical interface, extensive scripting capabilities, and compatibility with high-performance computing environments.
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Affiliation(s)
- Evert Jan Baerends
- Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands
| | - Nestor F Aguirre
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Nick D Austin
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo State University of New York, Buffalo, New York 14260-3000, USA
| | - F Matthias Bickelhaupt
- Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands
- Institute for Molecules and Materials, Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
- Department of Chemical Sciences, University of Johannesburg, Auckland Park, Johannesburg 2006, South Africa
| | - Rosa Bulo
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Chiara Cappelli
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
- IMT School for Advanced Studies Lucca, Piazza San Francesco 19, I-55100 Lucca, Italy
| | - Adri C T van Duin
- Department of Mechanical Engineering, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - Franco Egidi
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Célia Fonseca Guerra
- Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands
| | - Arno Förster
- Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands
| | - Mirko Franchini
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Theodorus P M Goumans
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Thomas Heine
- Faculty of Chemistry and Food Chemistry, TU Dresden, Bergstraße 66c, 01069 Dresden, Germany
| | - Matti Hellström
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Christoph R Jacob
- Institute of Physical and Theoretical Chemistry, Technische Universität Braunschweig, Gaußstraße 17, 38106 Braunschweig, Germany
| | - Lasse Jensen
- Department of Chemistry, The Pennsylvania State University, 104 Benkovic Building, University Park, Pennsylvania 16802, USA
| | - Mykhaylo Krykunov
- Insilico Medicine AI Limited, Level 6, Unit 08, Block A, IRENA HQ Building, Masdar City, P.O. Box 145748, Abu Dhabi, United Arab Emirates
| | - Erik van Lenthe
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Artur Michalak
- Jagiellonian University, Faculty of Chemistry, Gronostajowa 2, 30-387 Kraków, Poland
| | - Mariusz M Mitoraj
- Jagiellonian University, Faculty of Chemistry, Gronostajowa 2, 30-387 Kraków, Poland
| | - Johannes Neugebauer
- Universität Münster, Organisch-Chemisches Institut and Center for Multiscale Theory and Computation, Corrensstraße 36, 48149 Münster, Germany
| | | | - Pier Philipsen
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Harry Ramanantoanina
- Department Chemie, Johannes Gutenberg-Universität, Fritz-Strassmann Weg 2, 55128 Mainz, Germany
| | - Robert Rüger
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Georg Schreckenbach
- Department of Chemistry, University of Manitoba, Winnipeg, Manitoba R3T 2N2, Canada
| | - Mauro Stener
- Dipartimento di Scienze Chimiche e Farmaceutiche, Università degli studi di Trieste, Via Giorgieri 1, 34127 Trieste, Italy
| | - Marcel Swart
- ICREA, Pg. Lluís Companys 23, 08010 Barcelona, Spain
- IQCC and Department Química, Universitat de Girona, Campus Montilivi, 17003 Girona, Spain
| | - Jos M Thijssen
- Kavli Institute of Nanoscience, Delft University of Technology, 2628 CJ Delft, The Netherlands
| | - Tomáš Trnka
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
- National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic
| | - Lucas Visscher
- Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands
| | - Alexei Yakovlev
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
| | - Stan van Gisbergen
- Software for Chemistry & Materials BV, De Boelelaan 1109, 1081HV Amsterdam, The Netherlands
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3
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Huang CY, Chen HA, Lin WX, Chen KH, Lin YC, Wu TS, Chang CC, Pao CW, Chuang WT, Jan JC, Shao YC, Hiraoka N, Chiou JW, Kuo PC, Shiue J, Vishnu S. K D, Sankar R, Cyue ZW, Pong WF, Chen CW. In Situ Identification of Spin Magnetic Effect on Oxygen Evolution Reaction Unveiled by X-ray Emission Spectroscopy. J Am Chem Soc 2025; 147:13286-13295. [PMID: 40219990 PMCID: PMC12022985 DOI: 10.1021/jacs.4c18149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2024] [Revised: 04/02/2025] [Accepted: 04/03/2025] [Indexed: 04/14/2025]
Abstract
Manipulating the spin ordering of the oxygen evolution reaction (OER) catalysts through magnetization has recently emerged as a promising strategy to enhance performance. Despite numerous experiments elaborating on the spin magnetic effect for improved OER, the origin of this phenomenon remains largely unexplored, primarily due to the difficulty in directly distinguishing the spin states of electrocatalysts during chemical reactions at the atomic level. X-ray emission spectroscopy (XES), which provides information sensitive to the spin states of specific elements in a complex, may serve as a promising technique to differentiate the onset of OER catalytic activities from the influence of spin states. In this work, we employ the in situ XES technique, along with X-ray absorption spectroscopy (XAS), to investigate the interplay between atomic/electronic structures, spin states, and OER catalytic activities of the CoFe2O4 (CFO) catalyst under an external magnetic field. This enhancement is due to the spin magnetic effect that facilitates spin-selective electron transfer from adsorbed OH- reactants, which strongly depends on the spin configurations of the tetrahedral-(Td) and octahedral-(Oh) sites of both Fe and Co ions. Our result contributes to a comprehensive understanding of magnetic field-assisted electrocatalysis at the atomic level and paves the way for designing highly efficient OER catalysts.
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Affiliation(s)
- Chih-Ying Huang
- International
Graduate Program of Molecular Science and Technology (NTU-MST), National Taiwan University, Taipei 106319, Taiwan
- Molecular
Science and Technology Program Taiwan International Graduate Program
(TIGP), Academia Sinica, Taipei 115201, Taiwan
| | - Hsin-An Chen
- Institute
of Materials Science and Engineering, National
Taipei University of Technology, Taipei 10608, Taiwan
| | - Wei-Xuan Lin
- Department
of Physics, Tamkang University, New Taipei City 251301, Taiwan
| | - Kuan-Hung Chen
- Department
of Physics, Tamkang University, New Taipei City 251301, Taiwan
| | - Yu-Chang Lin
- National
Synchrotron Radiation Research Center, Hsinchu 300, Taiwan
| | - Tai-Sing Wu
- National
Synchrotron Radiation Research Center, Hsinchu 300, Taiwan
| | - Chia-Che Chang
- National
Synchrotron Radiation Research Center, Hsinchu 300, Taiwan
| | - Chih-Wen Pao
- National
Synchrotron Radiation Research Center, Hsinchu 300, Taiwan
| | - Wei-Tsung Chuang
- National
Synchrotron Radiation Research Center, Hsinchu 300, Taiwan
| | - Jyh-Chyuan Jan
- National
Synchrotron Radiation Research Center, Hsinchu 300, Taiwan
| | - Yu-Cheng Shao
- National
Synchrotron Radiation Research Center, Hsinchu 300, Taiwan
| | - Nozomu Hiraoka
- National
Synchrotron Radiation Research Center, Hsinchu 300, Taiwan
| | - Jau-Wern Chiou
- Department
of Applied Physics, National University
of Kaohsiung, Kaohsiung 811, Taiwan
| | - Pai-Chia Kuo
- Institute
of Atomic and Molecular Sciences, Academia
Sinica, Taipei 106319, Taiwan
| | - Jessie Shiue
- Institute
of Atomic and Molecular Sciences, Academia
Sinica, Taipei 106319, Taiwan
| | - Deepak Vishnu S. K
- Molecular
Science and Technology Program Taiwan International Graduate Program
(TIGP), Academia Sinica, Taipei 115201, Taiwan
- Department
of Chemistry, National Tsing Hua University, Hsinchu 300, Taiwan
| | - Raman Sankar
- Institute
of Physics, Academia Sinica, Taipei 115201, Taiwan
| | - Zih-Wei Cyue
- Department
of Materials Science and Engineering, National
Taiwan University, Taipei 106319, Taiwan
| | - Way-Faung Pong
- Department
of Physics, Tamkang University, New Taipei City 251301, Taiwan
| | - Chun-Wei Chen
- International
Graduate Program of Molecular Science and Technology (NTU-MST), National Taiwan University, Taipei 106319, Taiwan
- Department
of Materials Science and Engineering, National
Taiwan University, Taipei 106319, Taiwan
- Center for Condensed Matter Sciences and Center of Atomic
Initiative
for New Materials (AI-MAT), National Taiwan
University (NTU), Taipei 106319, Taiwan
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4
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Halldin Stenlid J, Görlin M, Diaz-Morales O, Davies B, Grigorev V, Degerman D, Kalinko A, Börner M, Shipilin M, Bauer M, Gallo A, Abild-Pedersen F, Bajdich M, Nilsson A, Koroidov S. Operando Characterization of Fe in Doped Ni x(Fe 1-x)O yH z Catalysts for Electrochemical Oxygen Evolution. J Am Chem Soc 2025; 147:4120-4134. [PMID: 39862200 PMCID: PMC11803719 DOI: 10.1021/jacs.4c13417] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2024] [Revised: 01/10/2025] [Accepted: 01/10/2025] [Indexed: 01/27/2025]
Abstract
Iron-doped nickel oxyhydroxides, Nix(Fe1-x)OyHz, are among the most promising oxygen evolution reaction (OER) electrocatalysts in alkaline environments. Although iron (Fe) significantly enhances the catalytic activity, there is still no clear consensus on whether Fe directly participates in the reaction or merely acts as a promoter. To elucidate the Fe's role, we performed operando X-ray spectroscopy studies supported by DFT on Nix(Fe1-x)OyHz electrocatalysts. We probed the reversible changes in the structure and electronic character of Nix(Fe1-x)OyHz as the electrode potential is cycled between the resting (here at 1.10 VRHE) and operational states (1.66 VRHE). DFT calculations and XAS simulations on a library of Fe structures in various NiOyHz environments are in favor of a distorted local octahedral Fe(III)O3(OH)3 configuration at the resting state with the NiOyHz scaffold going from α-Ni(OH)2 to γ-NiOOH as the potential is increased. Under catalytic conditions, EXAFS and HERFD spectra reveal changes in p-d mixing (covalency) relative to the resting state between O/OH ligands and Fe leading to a shift from octahedral to square pyramidal coordination at the Fe site. XES measurements and theoretical simulations further support that the Fe equilibrium structure remains in a formal Fe(III) state under both resting and operational conditions. These spectral changes are attributed to potential dependent structural rearrangements around Fe. The results suggest that ligand dissociation leads to the C4v symmetry as the most stable intermediate of the Fe during OER. This implies that Fe has a weakly coordinated or easily dissociable ligand that could serve to coordinate the O-O bond formation and, tentatively, play an active role in the Nix(Fe1-x)OyHz electrocatalyst.
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Affiliation(s)
- Joakim Halldin Stenlid
- Department
of Physics, Alba Nova Research Center, Stockholm
University, Stockholm SE-106 91 Sweden
- SUNCAT
Center for Interface Science and Catalysis, SLAC National Accelerator Laboratory, 2575 Sandhill Road, Menlo
Park, California 94025, United States
- SUNCAT
Center for Interface Science and Catalysis, Department of Engineering, Stanford University, 443 Via Ortega, Stanford, California 94305, United States
| | - Mikaela Görlin
- Department
of Physics, Alba Nova Research Center, Stockholm
University, Stockholm SE-106 91 Sweden
- Department
of Chemistry, Ångström Laboratory, Uppsala University, Uppsala SE-751 21, Sweden
| | - Oscar Diaz-Morales
- Department
of Physics, Alba Nova Research Center, Stockholm
University, Stockholm SE-106 91 Sweden
- Holst
Centre, Netherlands Organisation for Applied Scientific Research, HighTech Campus 31, Eindhoven, 5656, the Netherlands
| | - Bernadette Davies
- Department
of Physics, Alba Nova Research Center, Stockholm
University, Stockholm SE-106 91 Sweden
| | - Vladimir Grigorev
- Department
of Physics, Alba Nova Research Center, Stockholm
University, Stockholm SE-106 91 Sweden
- Wallenberg
Initiative Materials Science for Sustainability (WISE), Department
of Physics, Stockholm University, Stockholm SE-106 91, Sweden
| | - David Degerman
- Department
of Physics, Alba Nova Research Center, Stockholm
University, Stockholm SE-106 91 Sweden
- Wallenberg
Initiative Materials Science for Sustainability (WISE), Department
of Physics, Stockholm University, Stockholm SE-106 91, Sweden
| | - Aleksandr Kalinko
- Department
of Chemistry and Center for Sustainable Systems Design (CSSD), University of Paderborn, Warburger Strasse 100, Paderborn D-33098, Germany
- Deutsches
Elektronen-Synchrotron DESY, Notkestraße 85, Hamburg D-22607, Germany
| | - Mia Börner
- Department
of Physics, Alba Nova Research Center, Stockholm
University, Stockholm SE-106 91 Sweden
| | - Mikhail Shipilin
- Department
of Physics, Alba Nova Research Center, Stockholm
University, Stockholm SE-106 91 Sweden
| | - Matthias Bauer
- Department
of Chemistry and Center for Sustainable Systems Design (CSSD), University of Paderborn, Warburger Strasse 100, Paderborn D-33098, Germany
| | - Alessandro Gallo
- SUNCAT
Center for Interface Science and Catalysis, SLAC National Accelerator Laboratory, 2575 Sandhill Road, Menlo
Park, California 94025, United States
- SUNCAT
Center for Interface Science and Catalysis, Department of Engineering, Stanford University, 443 Via Ortega, Stanford, California 94305, United States
- Sila
Nanotechnologies, 2470
Mariner Square Loop, Alameda, California 94501, United States
| | - Frank Abild-Pedersen
- SUNCAT
Center for Interface Science and Catalysis, SLAC National Accelerator Laboratory, 2575 Sandhill Road, Menlo
Park, California 94025, United States
| | - Michal Bajdich
- SUNCAT
Center for Interface Science and Catalysis, SLAC National Accelerator Laboratory, 2575 Sandhill Road, Menlo
Park, California 94025, United States
| | - Anders Nilsson
- Department
of Physics, Alba Nova Research Center, Stockholm
University, Stockholm SE-106 91 Sweden
- SUNCAT
Center for Interface Science and Catalysis, SLAC National Accelerator Laboratory, 2575 Sandhill Road, Menlo
Park, California 94025, United States
- Wallenberg
Initiative Materials Science for Sustainability (WISE), Department
of Physics, Stockholm University, Stockholm SE-106 91, Sweden
| | - Sergey Koroidov
- Department
of Physics, Alba Nova Research Center, Stockholm
University, Stockholm SE-106 91 Sweden
- Wallenberg
Initiative Materials Science for Sustainability (WISE), Department
of Physics, Stockholm University, Stockholm SE-106 91, Sweden
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5
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Liu Y, Su X, Ding J, Zhou J, Liu Z, Wei X, Yang HB, Liu B. Progress and challenges in structural, in situ and operando characterization of single-atom catalysts by X-ray based synchrotron radiation techniques. Chem Soc Rev 2024; 53:11850-11887. [PMID: 39434695 DOI: 10.1039/d3cs00967j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2024]
Abstract
Single-atom catalysts (SACs) represent the ultimate size limit of nanoscale catalysts, combining the advantages of homogeneous and heterogeneous catalysts. SACs have isolated single-atom active sites that exhibit high atomic utilization efficiency, unique catalytic activity, and selectivity. Over the past few decades, synchrotron radiation techniques have played a crucial role in studying single-atom catalysis by identifying catalyst structures and enabling the understanding of reaction mechanisms. The profound comprehension of spectroscopic techniques and characteristics pertaining to SACs is important for exploring their catalytic activity origins and devising high-performance and stable SACs for industrial applications. In this review, we provide a comprehensive overview of the recent advances in X-ray based synchrotron radiation techniques for structural characterization and in situ/operando observation of SACs under reaction conditions. We emphasize the correlation between spectral fine features and structural characteristics of SACs, along with their analytical limitations. The development of IMST with spatial and temporal resolution is also discussed along with their significance in revealing the structural characteristics and reaction mechanisms of SACs. Additionally, this review explores the study of active center states using spectral fine characteristics combined with theoretical simulations, as well as spectroscopic analysis strategies utilizing machine learning methods to address challenges posed by atomic distribution inhomogeneity in SACs while envisaging potential applications integrating artificial intelligence seamlessly with experiments for real-time monitoring of single-atom catalytic processes.
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Affiliation(s)
- Yuhang Liu
- Shanghai Synchrotron Radiation Facility, Zhangjiang Laboratory, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201204, China.
- School of Materials Science and Engineering, Suzhou University of Science and Technology, Suzhou 215009, China.
| | - Xiaozhi Su
- Shanghai Synchrotron Radiation Facility, Zhangjiang Laboratory, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201204, China.
| | - Jie Ding
- Department of Materials Science and Engineering, City University of Hong Kong, Hong Kong SAR 999077, China.
| | - Jing Zhou
- College of Physics and Electronic Information Engineering, Zhejiang Normal University, Jinhua 321004, China
| | - Zhen Liu
- Shanghai Synchrotron Radiation Facility, Zhangjiang Laboratory, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201204, China.
| | - Xiangjun Wei
- Shanghai Synchrotron Radiation Facility, Zhangjiang Laboratory, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201204, China.
| | - Hong Bin Yang
- School of Materials Science and Engineering, Suzhou University of Science and Technology, Suzhou 215009, China.
| | - Bin Liu
- Department of Materials Science and Engineering, City University of Hong Kong, Hong Kong SAR 999077, China.
- Department of Chemistry, Hong Kong Institute of Clean Energy (HKICE) & Center of Super-Diamond and Advanced Films (COSDAF), City University of Hong Kong, Hong Kong SAR 999077, China
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6
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Steube J, Fritsch L, Kruse A, Bokareva OS, Demeshko S, Elgabarty H, Schoch R, Alaraby M, Egold H, Bracht B, Schmitz L, Hohloch S, Kühne TD, Meyer F, Kühn O, Lochbrunner S, Bauer M. Isostructural Series of a Cyclometalated Iron Complex in Three Oxidation States. Inorg Chem 2024; 63:16964-16980. [PMID: 39222251 DOI: 10.1021/acs.inorgchem.4c02576] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/04/2024]
Abstract
An isostructural series of FeII, FeIII, and FeIV complexes [Fe(ImP)2]0/+/2+ utilizing the ImP 1,1'-(1,3-phenylene)bis(3-methyl-1-imidazol-2-ylidene) ligand, combining N-heterocyclic carbenes and cyclometalating functions, is presented. The strong donor motif stabilizes the high-valent FeIV oxidation state yet keeps the FeII oxidation state accessible from the parent FeIII compound. Chemical oxidation of [Fe(ImP)2]+ yields stable [FeIV(ImP)2]2+. In contrast, [FeII(ImP)2]0, obtained by reduction, is highly sensitive toward oxygen. Exhaustive ground state characterization by single-crystal X-ray diffraction, 1H NMR, Mössbauer spectroscopy, temperature-dependent magnetic measurements, a combination of X-ray absorption near edge structure and valence-to-core, as well as core-to-core X-ray emission spectroscopy, complemented by detailed density functional theory (DFT) analysis, reveals that the three complexes [Fe(ImP)2]0/+/2+ can be unequivocally attributed to low-spin d6, d5, and d4 complexes. The excited state landscape of the FeII and FeIV complexes is characterized by short-lived 3MLCT and 3LMCT states, with lifetimes of 5.1 and 1.4 ps, respectively. In the FeII-compound, an energetically low-lying MC state leads to fast deactivation of the MLCT state. The distorted square-pyramidal state, where one carbene is dissociated, can not only relax into the ground state, but also into a singlet dissociated state. Its formation was investigated with time-dependent optical spectroscopy, while insights into its structure were gained by NMR spectroscopy.
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Affiliation(s)
- Jakob Steube
- Institute for Inorganic Chemistry, Paderborn University, 33098 Paderborn, Germany
- Center for Sustainable Systems Design (CSSD), Paderborn University, 33098 Paderborn, Germany
| | - Lorena Fritsch
- Institute for Inorganic Chemistry, Paderborn University, 33098 Paderborn, Germany
- Center for Sustainable Systems Design (CSSD), Paderborn University, 33098 Paderborn, Germany
| | - Ayla Kruse
- Department of Life, Light, and Matter, University of Rostock, 18051 Rostock, Germany
- Institute of Physics, University of Rostock, 18051 Rostock, Germany
| | - Olga S Bokareva
- Institute of Physics, University of Rostock, 18051 Rostock, Germany
| | - Serhiy Demeshko
- Institute of Inorganic Chemistry, University of Göttingen, 37077 Göttingen, Germany
| | - Hossam Elgabarty
- Center for Sustainable Systems Design (CSSD), Paderborn University, 33098 Paderborn, Germany
- Institute for Theoretical Chemistry, Paderborn University, 33098 Paderborn, Germany
| | - Roland Schoch
- Institute for Inorganic Chemistry, Paderborn University, 33098 Paderborn, Germany
- Center for Sustainable Systems Design (CSSD), Paderborn University, 33098 Paderborn, Germany
| | - Mohammad Alaraby
- Center for Sustainable Systems Design (CSSD), Paderborn University, 33098 Paderborn, Germany
- Institute for Theoretical Chemistry, Paderborn University, 33098 Paderborn, Germany
| | - Hans Egold
- Institute for Inorganic Chemistry, Paderborn University, 33098 Paderborn, Germany
| | - Bastian Bracht
- Institute for Inorganic Chemistry, Paderborn University, 33098 Paderborn, Germany
- Center for Sustainable Systems Design (CSSD), Paderborn University, 33098 Paderborn, Germany
| | - Lennart Schmitz
- Institute for Inorganic Chemistry, Paderborn University, 33098 Paderborn, Germany
- Center for Sustainable Systems Design (CSSD), Paderborn University, 33098 Paderborn, Germany
| | - Stephan Hohloch
- Institute for Inorganic Chemistry, Paderborn University, 33098 Paderborn, Germany
| | - Thomas D Kühne
- Center for Sustainable Systems Design (CSSD), Paderborn University, 33098 Paderborn, Germany
- Institute for Theoretical Chemistry, Paderborn University, 33098 Paderborn, Germany
| | - Franc Meyer
- Institute of Inorganic Chemistry, University of Göttingen, 37077 Göttingen, Germany
| | - Oliver Kühn
- Department of Life, Light, and Matter, University of Rostock, 18051 Rostock, Germany
- Institute of Physics, University of Rostock, 18051 Rostock, Germany
| | - Stefan Lochbrunner
- Department of Life, Light, and Matter, University of Rostock, 18051 Rostock, Germany
- Institute of Physics, University of Rostock, 18051 Rostock, Germany
| | - Matthias Bauer
- Institute for Inorganic Chemistry, Paderborn University, 33098 Paderborn, Germany
- Center for Sustainable Systems Design (CSSD), Paderborn University, 33098 Paderborn, Germany
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7
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Rana A, Peredkov S, Behrens M, DeBeer S. Probing the Local Environment in Potassium Salts and Potassium-Promoted Catalysts by Potassium Valence-to-Core X-ray Emission Spectroscopy. Inorg Chem 2024; 63:16217-16223. [PMID: 39162299 PMCID: PMC11372750 DOI: 10.1021/acs.inorgchem.4c02069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/21/2024]
Abstract
Potassium plays an important role in biology as well as a promoter in heterogeneous catalysis. There are, however, limited characterization techniques for potassium available in the literature. This study elucidates the potential of element-selective X-ray emission spectroscopy (XES) for characterizing the coordination environment and the electronic properties of potassium. A series of XES measurements were conducted, primarily focusing on the VtC transition (Kβ2,5) of potassium halides (KCl, KBr, and KI) and oxide-bound potassium salts, including potassium nitrate (KNO3) and potassium carbonate (K2CO3). Across the series of potassium halides, the VtC transition energy is observed to increase, as accurately reproduced by TDDFT calculations. Molecular orbital analysis suggests that the Kβ2,5 transition is primarily derived from halide np contributions, with the primary factor influencing the energy shift being the metal-ligand distances. For oxide ligands, an additional Kβ″ transition appears alongside the Kβ2,5, which is attributed to a low-energy ligand ns, as elucidated by theoretical calculations. Finally, the XES spectra of two potassium-promoted catalysts for ammonia decomposition/synthesis were measured. These spectra show that potassium within the catalyst is distinct from other K salts in the VtC region, which could be promising for understanding the role of potassium as an electronic promoter.
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Affiliation(s)
- Atanu Rana
- Max Planck Institute for Chemical Energy Conversion, Stiftstraβe 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Sergey Peredkov
- Max Planck Institute for Chemical Energy Conversion, Stiftstraβe 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Malte Behrens
- Institute of Inorganic Chemistry, Kiel University, Max-Eyth-Str. 2, 24118 Kiel, Germany
| | - Serena DeBeer
- Max Planck Institute for Chemical Energy Conversion, Stiftstraβe 34-36, D-45470 Mülheim an der Ruhr, Germany
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8
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Roemelt C, Peredkov S, Neese F, Roemelt M, DeBeer S. Valence-to-core X-ray emission spectroscopy of transition metal tetrahalides: mechanisms governing intensities. Phys Chem Chem Phys 2024; 26:19960-19975. [PMID: 38994715 DOI: 10.1039/d4cp00967c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/13/2024]
Abstract
Valence-to-core (VtC) X-ray emission spectroscopy offers the opportunity to probe the valence electronic structure of a system filtered by selection rules. From this, the nature of its ligands can be inferred. While a preceding 1s ionization creates a core hole, in VtC XES this core hole is filled with electrons from mainly ligand based orbitals. In this work, we investigated the trends in the observed VtC intensities for a series of transition metal halides, which spans the first row transition metals from manganese to copper. Further, with the aid of computational studies, we corroborated these trends and identified the mechanisms and factors that dictate the observed intensity trends. Small amounts of metal p contribution to the ligand orbitals are known to give rise to intensity of a VtC transition. By employing an LCAO (linear combination of atomic orbitals) approach, we were able to assess the amount of metal p contribution to the ligand molecular orbitals, as well as the role of the transition dipole moment and correlate these factors to the experimentally observed intensities. Finally, by employing an ano (atomic natural orbital) basis set within the calculations, the nature of the metal p contribution (3p vs. 4p) was qualitatively assessed and their trends discussed within the same transition metal halide series.
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Affiliation(s)
- Christina Roemelt
- Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470 Mülheim an der Ruhr, Germany.
| | - Sergey Peredkov
- Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470 Mülheim an der Ruhr, Germany.
| | - Frank Neese
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Michael Roemelt
- Humboldt University Berlin, Brook-Taylor-Str. 2, 12489 Berlin, Germany.
| | - Serena DeBeer
- Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470 Mülheim an der Ruhr, Germany.
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9
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Majumder R, Sokolov AY. Consistent Second-Order Treatment of Spin-Orbit Coupling and Dynamic Correlation in Quasidegenerate N-Electron Valence Perturbation Theory. J Chem Theory Comput 2024; 20:4676-4688. [PMID: 38795071 DOI: 10.1021/acs.jctc.4c00458] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/27/2024]
Abstract
We present a formulation and implementation of second-order quasidegenerate N-electron valence perturbation theory (QDNEVPT2) that provides a balanced and accurate description of spin-orbit coupling and dynamic correlation effects in multiconfigurational electronic states. In our approach, the energies and wave functions of electronic states are computed by treating electron repulsion and spin-orbit coupling operators as equal perturbations to the nonrelativistic complete active-space wave functions, and their contributions are incorporated fully up to the second order. The spin-orbit effects are described using the Breit-Pauli (BP) or exact two-component Douglas-Kroll-Hess (DKH) Hamiltonians within spin-orbit mean-field approximation. The resulting second-order methods (BP2- and DKH2-QDNEVPT2) are capable of treating spin-orbit coupling effects in nearly degenerate electronic states by diagonalizing an effective Hamiltonian expanded in a compact non-relativistic basis. For a variety of atoms and small molecules across the entire periodic table, we demonstrate that DKH2-QDNEVPT2 is competitive in accuracy with variational two-component relativistic theories. BP2-QDNEVPT2 shows high accuracy for the second- and third-period elements, but its performance deteriorates for heavier atoms and molecules. We also consider the first-order spin-orbit QDNEVPT2 approximations (BP1- and DKH1-QDNEVPT2), among which DKH1-QDNEVPT2 is reliable but less accurate than DKH2-QDNEVPT2. Both DKH1- and DKH2-QDNEVPT2 hold promise as efficient and accurate electronic structure methods for treating electron correlation and spin-orbit coupling in a variety of applications.
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Affiliation(s)
- Rajat Majumder
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
| | - Alexander Yu Sokolov
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
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10
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Gaba NP, de Moura CEV, Majumder R, Sokolov AY. Simulating transient X-ray photoelectron spectra of Fe(CO) 5 and its photodissociation products with multireference algebraic diagrammatic construction theory. Phys Chem Chem Phys 2024; 26:15927-15938. [PMID: 38805029 DOI: 10.1039/d4cp00801d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/29/2024]
Abstract
Accurate simulations of transient X-ray photoelectron spectra (XPS) provide unique opportunities to bridge the gap between theory and experiment in understanding the photoactivated dynamics in molecules and materials. However, simulating X-ray photoelectron spectra along a photochemical reaction pathway is challenging as it requires accurate description of electronic structure incorporating core-hole screening, orbital relaxation, electron correlation, and spin-orbit coupling in excited states or at nonequilibrium ground-state geometries. In this work, we employ the recently developed multireference algebraic diagrammatic construction theory (MR-ADC) to investigate the core-ionized states and X-ray photoelectron spectra of Fe(CO)5 and its photodissociation products (Fe(CO)4, Fe(CO)3) following excitation with 266 nm light. The simulated transient Fe 3p and CO 3σ XPS spectra incorporating spin-orbit coupling and high-order electron correlation effects are shown to be in a good agreement with the experimental measurements by Leitner et al. [J. Chem. Phys., 2018, 149, 044307]. Our calculations suggest that core-hole screening, spin-orbit coupling, and ligand-field splitting effects are similarly important in reproducing the experimentally observed chemical shifts in transient Fe 3p XPS spectra of iron carbonyl complexes. Our results also demonstrate that the MR-ADC methods can be very useful in interpreting the transient XPS spectra of transition metal compounds.
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Affiliation(s)
- Nicholas P Gaba
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio, 43210, USA.
| | - Carlos E V de Moura
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio, 43210, USA.
| | - Rajat Majumder
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio, 43210, USA.
| | - Alexander Yu Sokolov
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio, 43210, USA.
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11
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Geoghegan BL, Bilyj JK, Bernhardt PV, DeBeer S, Cutsail GE. X-ray absorption and emission spectroscopy of N 2S 2 Cu(II)/(III) complexes. Dalton Trans 2024; 53:7828-7838. [PMID: 38624161 DOI: 10.1039/d4dt00085d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/17/2024]
Abstract
This study investigates the influence of ligand charge on transition energies in a series of CuN2S2 complexes based on dithiocarbazate Schiff base ligands using Cu K-edge X-ray absorption spectroscopy (XAS) and Kβ valence-to-core (VtC) X-ray emission spectroscopy (XES). By comparing the formally Cu(II) complexes [CuII(HL1)] (HL12- = dimethyl pentane-2,4-diylidenebis[carbonodithiohydrazonate]) and [CuII(HL2)] (HL22- = dibenzyl pentane-2,4-diylidenebis[carbonodithiohydrazonate]) and the formally Cu(III) complex [CuIII(L2)], distinct changes in transition energies are observed, primarily attributed to the metal oxidation state. Density functional theory (DFT) calculations demonstrate how an increased negative charge on the deprotonated L23- ligand stabilizes the Cu(III) center through enhanced charge donation, modulating the core transition energies. Overall, significant shifts to higher energies are noted upon metal oxidation, emphasizing the importance of scrutinizing ligand structure in XAS/VtC XES analysis. The data further support the redox-innocent role of the Schiff base ligands and underscore the criticality of ligand protonation levels in future spectroscopic studies, particularly for catalytic intermediates. The combined XAS-VtC XES methodology validates the Cu(III) oxidation state assignment while offering insights into ligand protonation effects on core-level spectroscopic transitions.
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Affiliation(s)
- Blaise L Geoghegan
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany.
- Institute of Inorganic Chemistry, University of Duisburg-Essen, Universitätsstrasse 5-7, 45117 Essen, Germany
- Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, W12 0BZ, London, UK
| | - Jessica K Bilyj
- School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane 4072, Australia
| | - Paul V Bernhardt
- School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane 4072, Australia
| | - Serena DeBeer
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany.
| | - George E Cutsail
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany.
- Institute of Inorganic Chemistry, University of Duisburg-Essen, Universitätsstrasse 5-7, 45117 Essen, Germany
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12
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Ansari M, Bhattacharjee S, Pantazis DA. Correlating Structure with Spectroscopy in Ascorbate Peroxidase Compound II. J Am Chem Soc 2024; 146:9640-9656. [PMID: 38530124 PMCID: PMC11009960 DOI: 10.1021/jacs.3c13169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Revised: 03/15/2024] [Accepted: 03/15/2024] [Indexed: 03/27/2024]
Abstract
Structural and spectroscopic investigations of compound II in ascorbate peroxidase (APX) have yielded conflicting conclusions regarding the protonation state of the crucial Fe(IV) intermediate. Neutron diffraction and crystallographic data support an iron(IV)-hydroxo formulation, whereas Mössbauer, X-ray absorption (XAS), and nuclear resonance vibrational spectroscopy (NRVS) studies appear consistent with an iron(IV)-oxo species. Here we examine APX with spectroscopy-oriented QM/MM calculations and extensive exploration of the conformational space for both possible formulations of compound II. We establish that irrespective of variations in the orientation of a vicinal arginine residue and potential reorganization of proximal water molecules and hydrogen bonding, the Fe-O distances for the oxo and hydroxo forms consistently fall within distinct, narrow, and nonoverlapping ranges. The accuracy of geometric parameters is validated by coupled-cluster calculations with the domain-based local pair natural orbital approach, DLPNO-CCSD(T). QM/MM calculations of spectroscopic properties are conducted for all structural variants, encompassing Mössbauer, optical, X-ray absorption, and X-ray emission spectroscopies and NRVS. All spectroscopic observations can be assigned uniquely to an Fe(IV)═O form. A terminal hydroxy group cannot be reconciled with the spectroscopic data. Under no conditions can the Fe(IV)═O distance be sufficiently elongated to approach the crystallographically reported Fe-O distance. The latter is consistent only with a hydroxo species, either Fe(IV) or Fe(III). Our findings strongly support the Fe(IV)═O formulation of APX-II and highlight unresolved discrepancies in the nature of samples used across different experimental studies.
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Affiliation(s)
- Mursaleem Ansari
- Max-Planck-Institut für
Kohlenforschung, Kaiser-Wilhelm-Platz
1, Mülheim an der Ruhr 45470, Germany
| | - Sinjini Bhattacharjee
- Max-Planck-Institut für
Kohlenforschung, Kaiser-Wilhelm-Platz
1, Mülheim an der Ruhr 45470, Germany
| | - Dimitrios A. Pantazis
- Max-Planck-Institut für
Kohlenforschung, Kaiser-Wilhelm-Platz
1, Mülheim an der Ruhr 45470, Germany
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13
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Krishnan A, Lee DC, Slagle I, Ahsan S, Mitra S, Read E, Alamgir FM. Monitoring Redox Processes in Lithium-Ion Batteries by Laboratory-Scale Operando X-ray Emission Spectroscopy. ACS APPLIED MATERIALS & INTERFACES 2024; 16:16096-16105. [PMID: 38502716 PMCID: PMC10995943 DOI: 10.1021/acsami.3c18424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2023] [Revised: 03/01/2024] [Accepted: 03/05/2024] [Indexed: 03/21/2024]
Abstract
Tracking changes in the chemical state of transition metals in alkali-ion batteries is crucial to understanding the redox chemistry during operation. X-ray absorption spectroscopy (XAS) is often used to follow the chemistry through observed changes in the chemical state and local atomic structure as a function of the state-of-charge (SoC) in batteries. In this study, we utilize an operando X-ray emission spectroscopy (XES) method to observe changes in the chemical state of active elements in batteries during operation. Operando XES and XAS were compared by using a laboratory-scale setup for four different battery systems: LiCoO2 (LCO), Li[Ni1/3Co1/3Mn1/3]O2 (NMC111), Li[Ni0.8Co0.1Mn0.1]O2 (NMC811), and LiFePO4 (LFP) under a constant current charging the battery in 10 h (C/10 charge rate). We show that XES, despite narrower chemical shifts in comparison to XAS, allows us to fingerprint the battery SOC in real time. We further demonstrate that XES can be used to track the change in net spin of the probed atoms by analyzing changes in the emission peak shape. As a test case, the connection between net spin and the local chemical and structural environment was investigated by using XES and XAS in the case of electrochemically delithiated LCO in the range of 2-10% lithium removal.
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Affiliation(s)
- Abiram Krishnan
- School of Materials Science
and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
| | | | - Ian Slagle
- School of Materials Science
and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
| | - Sumaiyatul Ahsan
- School of Materials Science
and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
| | | | - Ethan Read
- School of Materials Science
and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
| | - Faisal M. Alamgir
- School of Materials Science
and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
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14
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Likhonina AE, Mamardashvili GM, Mamardashvili NZ. Synthesis and Design of Metalloporphyrin Oligomers with Temperature-Assisted Spectral-Luminescent Properties. RUSS J INORG CHEM+ 2024; 69:449-461. [DOI: 10.1134/s0036023624600138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2024] [Revised: 02/22/2024] [Accepted: 02/26/2024] [Indexed: 12/16/2024]
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15
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Guo M, Braun A, Sokaras D, Kroll T. Iron Kβ X-ray Emission Spectroscopy: The Origin of Spectral Features from Atomic to Molecular Systems Using Multi-configurational Calculations. J Phys Chem A 2024; 128:1260-1273. [PMID: 38329897 DOI: 10.1021/acs.jpca.3c07949] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/10/2024]
Abstract
Kβ X-ray emission spectroscopy (XES) is widely used to fingerprint the local spin of transition-metal ions, including in pump-probe experiments, to identify excited states or in chemical and biological reactions to characterize short-lived intermediates. In this study, the spectra of ferrous and ferric complexes for various spin states were measured experimentally and described theoretically through restricted active space (RAS) calculations including dynamic correlations. Through the RAS calculations from simple atomic models to complex molecular systems, spectral effects such as the exchange interactions, crystal-field strength, and covalent orbital mixing were evaluated and discussed. The calculations find that only the spectral features of low-spin cases show a dependence on the crystal-field strength, particularly for ferrous low spin. The effect of the covalent orbital mixing strength on the first moment of the Kβ1,3 main line and the Kβ1,3-Kβ' energy splitting is quantitatively described. Clear relationships are found within a given nominal spin but less between different spin states, which calls for careful selection of reference spectra in future experiments. This study further advances our understanding of the correlation between changes in experimental spectral features and their corresponding electronic structure information.
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Affiliation(s)
- Meiyuan Guo
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Augustin Braun
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Dimosthenis Sokaras
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Thomas Kroll
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
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16
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Banerjee A, Jay RM, Leitner T, Wang RP, Harich J, Stefanuik R, Coates MR, Beale EV, Kabanova V, Kahraman A, Wach A, Ozerov D, Arrell C, Milne C, Johnson PJM, Cirelli C, Bacellar C, Huse N, Odelius M, Wernet P. Accessing metal-specific orbital interactions in C-H activation with resonant inelastic X-ray scattering. Chem Sci 2024; 15:2398-2409. [PMID: 38362433 PMCID: PMC10866335 DOI: 10.1039/d3sc04388f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Accepted: 01/01/2024] [Indexed: 02/17/2024] Open
Abstract
Photochemically prepared transition-metal complexes are known to be effective at cleaving the strong C-H bonds of organic molecules in room temperature solutions. There is also ample theoretical evidence that the two-way, metal to ligand (MLCT) and ligand to metal (LMCT), charge-transfer between an incoming alkane C-H group and the transition metal is the decisive interaction in the C-H activation reaction. What is missing, however, are experimental methods to directly probe these interactions in order to reveal what determines reactivity of intermediates and the rate of the reaction. Here, using quantum chemical simulations we predict and propose future time-resolved valence-to-core resonant inelastic X-ray scattering (VtC-RIXS) experiments at the transition metal L-edge as a method to provide a full account of the evolution of metal-alkane interactions during transition-metal mediated C-H activation reactions. For the model system cyclopentadienyl rhodium dicarbonyl (CpRh(CO)2), we demonstrate, by simulating the VtC-RIXS signatures of key intermediates in the C-H activation pathway, how the Rh-centered valence-excited states accessible through VtC-RIXS directly reflect changes in donation and back-donation between the alkane C-H group and the transition metal as the reaction proceeds via those intermediates. We benchmark and validate our quantum chemical simulations against experimental steady-state measurements of CpRh(CO)2 and Rh(acac)(CO)2 (where acac is acetylacetonate). Our study constitutes the first step towards establishing VtC-RIXS as a new experimental observable for probing reactivity of C-H activation reactions. More generally, the study further motivates the use of time-resolved VtC-RIXS to follow the valence electronic structure evolution along photochemical, photoinitiated and photocatalytic reactions with transition metal complexes.
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Affiliation(s)
- Ambar Banerjee
- Department of Physics and Astronomy, Uppsala University 751 20 Uppsala Sweden
| | - Raphael M Jay
- Department of Physics and Astronomy, Uppsala University 751 20 Uppsala Sweden
| | - Torsten Leitner
- Department of Physics and Astronomy, Uppsala University 751 20 Uppsala Sweden
| | - Ru-Pan Wang
- Center for Free-Electron Laser Science, Department of Physics, University of Hamburg 22761 Hamburg Germany
| | - Jessica Harich
- Center for Free-Electron Laser Science, Department of Physics, University of Hamburg 22761 Hamburg Germany
| | - Robert Stefanuik
- Department of Physics and Astronomy, Uppsala University 751 20 Uppsala Sweden
| | - Michael R Coates
- Department of Physics, Stockholm University, AlbaNova University Center 106 91 Stockholm Sweden
| | - Emma V Beale
- Paul Scherrer Institute CH-5232 Villigen PSI Switzerland
| | | | | | - Anna Wach
- Paul Scherrer Institute CH-5232 Villigen PSI Switzerland
- Institute of Nuclear Physics, Polish Academy of Sciences PL-31342 Krakow Poland
| | - Dmitry Ozerov
- Paul Scherrer Institute CH-5232 Villigen PSI Switzerland
| | | | | | | | | | | | - Nils Huse
- Center for Free-Electron Laser Science, Department of Physics, University of Hamburg 22761 Hamburg Germany
| | - Michael Odelius
- Department of Physics, Stockholm University, AlbaNova University Center 106 91 Stockholm Sweden
| | - Philippe Wernet
- Department of Physics and Astronomy, Uppsala University 751 20 Uppsala Sweden
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17
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Wandzilak A, Grubel K, Skubi KL, McWilliams SF, Bessas D, Rana A, Hugenbruch S, Dey A, Holland PL, DeBeer S. Mössbauer and Nuclear Resonance Vibrational Spectroscopy Studies of Iron Species Involved in N-N Bond Cleavage. Inorg Chem 2023; 62:18449-18464. [PMID: 37902987 PMCID: PMC10647920 DOI: 10.1021/acs.inorgchem.3c02594] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Indexed: 11/01/2023]
Abstract
Diketiminate-supported iron complexes are capable of cleaving the strong triple bond of N2 to give a tetra-iron complex with two nitrides (Rodriguez et al., Science, 2011, 334, 780-783). The mechanism of this reaction has been difficult to determine, but a transient green species was observed during the reaction that corresponds to a potential intermediate. Here, we describe studies aiming to identify the characteristics of this intermediate, using a range of spectroscopic techniques, including Mössbauer spectroscopy, electronic absorption spectroscopy, Raman spectroscopy, nuclear magnetic resonance (NMR) spectroscopy, and nuclear resonance vibrational spectroscopy (NRVS) complemented by density functional theory (DFT) calculations. We successfully elucidated the nature of the starting iron(II) species and the bis(nitride) species in THF solution, and in each case, THF breaks up the multiiron species. Various observations on the green intermediate species indicate that it has one N2 per two Fe atoms, has THF associated with it, and has NRVS features indicative of bridging N2. Computational models with a formally diiron(0)-N2 core are most consistent with the accumulated data, and on this basis, a mechanism for N2 splitting is suggested. This work shows the power of combining NRVS, Mössbauer, NMR, and vibrational spectroscopies with computations for revealing the nature of transient iron species during N2 cleavage.
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Affiliation(s)
- Aleksandra Wandzilak
- Max
Planck Institute for Chemical Energy Conversion, Mülheim an der Ruhr 45470, Germany
- Faculty
of Physics and Applied Computer Science, AGH University of Science and Technology, Krakow 30-059, Poland
| | - Katarzyna Grubel
- Department
of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Kazimer L. Skubi
- Department
of Chemistry, Yale University, New Haven, Connecticut 06520, United States
- Department
of Chemistry, Carleton College, Northfield, Minnesota 55057, United States
| | - Sean F. McWilliams
- Department
of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Dimitrios Bessas
- European
Synchrotron Radiation Facility, Grenoble F-38043, France
| | - Atanu Rana
- Max
Planck Institute for Chemical Energy Conversion, Mülheim an der Ruhr 45470, Germany
- School of
Chemical Science, Indian Association for
the Cultivation of Science, Kolkata 700032, India
| | - Stefan Hugenbruch
- Max
Planck Institute for Chemical Energy Conversion, Mülheim an der Ruhr 45470, Germany
| | - Abhishek Dey
- School of
Chemical Science, Indian Association for
the Cultivation of Science, Kolkata 700032, India
| | - Patrick L. Holland
- Department
of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Serena DeBeer
- Max
Planck Institute for Chemical Energy Conversion, Mülheim an der Ruhr 45470, Germany
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18
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Hou K, Börgel J, Jiang HZH, SantaLucia DJ, Kwon H, Zhuang H, Chakarawet K, Rohde RC, Taylor JW, Dun C, Paley MV, Turkiewicz AB, Park JG, Mao H, Zhu Z, Alp EE, Zhao J, Hu MY, Lavina B, Peredkov S, Lv X, Oktawiec J, Meihaus KR, Pantazis DA, Vandone M, Colombo V, Bill E, Urban JJ, Britt RD, Grandjean F, Long GJ, DeBeer S, Neese F, Reimer JA, Long JR. Reactive high-spin iron(IV)-oxo sites through dioxygen activation in a metal-organic framework. Science 2023; 382:547-553. [PMID: 37917685 DOI: 10.1126/science.add7417] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 09/24/2023] [Indexed: 11/04/2023]
Abstract
In nature, nonheme iron enzymes use dioxygen to generate high-spin iron(IV)=O species for a variety of oxygenation reactions. Although synthetic chemists have long sought to mimic this reactivity, the enzyme-like activation of O2 to form high-spin iron(IV) = O species remains an unrealized goal. Here, we report a metal-organic framework featuring iron(II) sites with a local structure similar to that in α-ketoglutarate-dependent dioxygenases. The framework reacts with O2 at low temperatures to form high-spin iron(IV) = O species that are characterized using in situ diffuse reflectance infrared Fourier transform, in situ and variable-field Mössbauer, Fe Kβ x-ray emission, and nuclear resonance vibrational spectroscopies. In the presence of O2, the framework is competent for catalytic oxygenation of cyclohexane and the stoichiometric conversion of ethane to ethanol.
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Affiliation(s)
- Kaipeng Hou
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Jonas Börgel
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Henry Z H Jiang
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
| | - Daniel J SantaLucia
- Max Planck Institute for Chemical Energy Conversion, D-45470 Mülheim an der Ruhr, Germany
- Max-Planck-Institut für Kohlenforschung, D-45470 Mülheim an der Ruhr, Germany
| | - Hyunchul Kwon
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
| | - Hao Zhuang
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, CA 94720, USA
- Department of Materials Science and Engineering, University of California, Berkeley, CA 94720, USA
| | | | - Rachel C Rohde
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
| | - Jordan W Taylor
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
| | - Chaochao Dun
- The Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Maria V Paley
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Ari B Turkiewicz
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
| | - Jesse G Park
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
| | - Haiyan Mao
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, CA 94720, USA
| | - Ziting Zhu
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Department of Materials Science and Engineering, University of California, Berkeley, CA 94720, USA
| | - E Ercan Alp
- Advanced Photon Source, Argonne National Laboratory, Lemont, IL 60439, USA
| | - Jiyong Zhao
- Advanced Photon Source, Argonne National Laboratory, Lemont, IL 60439, USA
| | - Michael Y Hu
- Advanced Photon Source, Argonne National Laboratory, Lemont, IL 60439, USA
| | - Barbara Lavina
- Advanced Photon Source, Argonne National Laboratory, Lemont, IL 60439, USA
- Center for Advanced Radiation Sources, The University of Chicago, Chicago, IL 60637, USA
| | - Sergey Peredkov
- Max Planck Institute for Chemical Energy Conversion, D-45470 Mülheim an der Ruhr, Germany
| | - Xudong Lv
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
| | - Julia Oktawiec
- Department of Chemistry, Northwestern University, Evanston, IL 60208, USA
| | - Katie R Meihaus
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
| | | | - Marco Vandone
- Department of Chemistry, University of Milan, 20133 Milan, Italy
| | - Valentina Colombo
- Department of Chemistry, University of Milan, 20133 Milan, Italy
- Consorzio Interuniversitario Nazionale per la Scienza e Tecnologia dei Materiali (INSTM), UdR Milano, Via Golgi 19, 20133 Milano, Italy
| | - Eckhard Bill
- Max Planck Institute for Chemical Energy Conversion, D-45470 Mülheim an der Ruhr, Germany
| | - Jeffrey J Urban
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- The Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - R David Britt
- Department of Chemistry, University of California, Davis, CA 95616, USA
- Miller Institute for Basic Research in Science, University of California, Berkeley CA 94720, USA
| | - Fernande Grandjean
- Department of Chemistry, Missouri University of Science and Technology, University of Missouri, Rolla, MO 65409, USA
| | - Gary J Long
- Department of Chemistry, Missouri University of Science and Technology, University of Missouri, Rolla, MO 65409, USA
| | - Serena DeBeer
- Max Planck Institute for Chemical Energy Conversion, D-45470 Mülheim an der Ruhr, Germany
| | - Frank Neese
- Max-Planck-Institut für Kohlenforschung, D-45470 Mülheim an der Ruhr, Germany
| | - Jeffrey A Reimer
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, CA 94720, USA
| | - Jeffrey R Long
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, CA 94720, USA
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19
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Watson L, Pope T, Jay RM, Banerjee A, Wernet P, Penfold TJ. A Δ-learning strategy for interpretation of spectroscopic observables. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2023; 10:064101. [PMID: 37941993 PMCID: PMC10629969 DOI: 10.1063/4.0000215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/19/2023] [Accepted: 10/17/2023] [Indexed: 11/10/2023]
Abstract
Accurate computations of experimental observables are essential for interpreting the high information content held within x-ray spectra. However, for complicated systems this can be difficult, a challenge compounded when dynamics becomes important owing to the large number of calculations required to capture the time-evolving observable. While machine learning architectures have been shown to represent a promising approach for rapidly predicting spectral lineshapes, achieving simultaneously accurate and sufficiently comprehensive training data is challenging. Herein, we introduce Δ-learning for x-ray spectroscopy. Instead of directly learning the structure-spectrum relationship, the Δ-model learns the structure dependent difference between a higher and lower level of theory. Consequently, once developed these models can be used to translate spectral shapes obtained from lower levels of theory to mimic those corresponding to higher levels of theory. Ultimately, this achieves accurate simulations with a much reduced computational burden as only the lower level of theory is computed, while the model can instantaneously transform this to a spectrum equivalent to a higher level of theory. Our present model, demonstrated herein, learns the difference between TDDFT(BLYP) and TDDFT(B3LYP) spectra. Its effectiveness is illustrated using simulations of Rh L3-edge spectra tracking the C-H activation of octane by a cyclopentadienyl rhodium carbonyl complex.
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Affiliation(s)
- Luke Watson
- Chemistry, School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne NE1 7RU, United Kingdom
| | - Thomas Pope
- Chemistry, School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne NE1 7RU, United Kingdom
| | - Raphael M. Jay
- Department of Physics and Astronomy, Uppsala University, 751 20 Uppsala, Sweden
| | - Ambar Banerjee
- Department of Physics and Astronomy, Uppsala University, 751 20 Uppsala, Sweden
| | - Philippe Wernet
- Department of Physics and Astronomy, Uppsala University, 751 20 Uppsala, Sweden
| | - Thomas J. Penfold
- Chemistry, School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne NE1 7RU, United Kingdom
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20
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Wang J, Hsu CS, Wu TS, Chan TS, Suen NT, Lee JF, Chen HM. In situ X-ray spectroscopies beyond conventional X-ray absorption spectroscopy on deciphering dynamic configuration of electrocatalysts. Nat Commun 2023; 14:6576. [PMID: 37852958 PMCID: PMC10584842 DOI: 10.1038/s41467-023-42370-8] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Accepted: 10/04/2023] [Indexed: 10/20/2023] Open
Abstract
Realizing viable electrocatalytic processes for energy conversion/storage strongly relies on an atomic-level understanding of dynamic configurations on catalyst-electrolyte interface. X-ray absorption spectroscopy (XAS) has become an indispensable tool to in situ investigate dynamic natures of electrocatalysts but still suffers from limited energy resolution, leading to significant electronic transitions poorly resolved. Herein, we highlight advanced X-ray spectroscopies beyond conventional XAS, with emphasis on their unprecedented capabilities of deciphering key configurations of electrocatalysts. The profound complementarities of X-ray spectroscopies from various aspects are established in a probing energy-dependent "in situ spectroscopy map" for comprehensively understanding the solid-liquid interface. This perspective establishes an indispensable in situ research model for future studies and offers exciting research prospects for scientists and spectroscopists.
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Affiliation(s)
- Jiali Wang
- Department of Chemistry and Center for Emerging Materials and Advanced Devices, National Taiwan University, Taipei, 10617, Taiwan
| | - Chia-Shuo Hsu
- Department of Chemistry and Center for Emerging Materials and Advanced Devices, National Taiwan University, Taipei, 10617, Taiwan
| | - Tai-Sing Wu
- National Synchrotron Radiation Research Center, Hsinchu, 30076, Taiwan
| | - Ting-Shan Chan
- National Synchrotron Radiation Research Center, Hsinchu, 30076, Taiwan.
| | - Nian-Tzu Suen
- College of Chemistry & Chemical Engineering, Yangzhou University, 225002, Yangzhou, China
| | - Jyh-Fu Lee
- National Synchrotron Radiation Research Center, Hsinchu, 30076, Taiwan
| | - Hao Ming Chen
- Department of Chemistry and Center for Emerging Materials and Advanced Devices, National Taiwan University, Taipei, 10617, Taiwan.
- National Synchrotron Radiation Research Center, Hsinchu, 30076, Taiwan.
- Graduate Institute of Nanomedicine and Medical Engineering, College of Biomedical Engineering, Taipei Medical University, Taipei, 11031, Taiwan.
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21
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Gómez-Suárez A, Neumann CN. Stereochemistry in All Its Shapes and Forms: The 56 th Bürgenstock Conference. Angew Chem Int Ed Engl 2023; 62:e202309468. [PMID: 37590448 DOI: 10.1002/anie.202309468] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Indexed: 08/19/2023]
Abstract
Acknowledging the crucial role of stereochemistry in fields as diverse as total synthesis, synthetic methodology, spectroscopy, and the study of the origin of life, the 56th SCS Conference on Stereochemistry, better known as the BÃ1/4rgenstock Conference, brought together a diverse range of chemistry expertise in Brunnen, Switzerland.
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Affiliation(s)
- Adrián Gómez-Suárez
- Organic Chemistry, Bergische Universität Wuppertal, Gaußstr. 20, 42119, Wuppertal, Germany
| | - Constanze N Neumann
- Department of Heterogeneous Catalysis, Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470, Mülheim an der Ruhr, Germany
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22
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Reinhard M, Skoien D, Spies JA, Garcia-Esparza AT, Matson BD, Corbett J, Tian K, Safranek J, Granados E, Strader M, Gaffney KJ, Alonso-Mori R, Kroll T, Sokaras D. Solution phase high repetition rate laser pump x-ray probe picosecond hard x-ray spectroscopy at the Stanford Synchrotron Radiation Lightsource. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2023; 10:054304. [PMID: 37901682 PMCID: PMC10613086 DOI: 10.1063/4.0000207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Accepted: 10/11/2023] [Indexed: 10/31/2023]
Abstract
We present a dedicated end-station for solution phase high repetition rate (MHz) picosecond hard x-ray spectroscopy at beamline 15-2 of the Stanford Synchrotron Radiation Lightsource. A high-power ultrafast ytterbium-doped fiber laser is used to photoexcite the samples at a repetition rate of 640 kHz, while the data acquisition operates at the 1.28 MHz repetition rate of the storage ring recording data in an alternating on-off mode. The time-resolved x-ray measurements are enabled via gating the x-ray detectors with the 20 mA/70 ps camshaft bunch of SPEAR3, a mode available during the routine operations of the Stanford Synchrotron Radiation Lightsource. As a benchmark study, aiming to demonstrate the advantageous capabilities of this end-station, we have conducted picosecond Fe K-edge x-ray absorption spectroscopy on aqueous [FeII(phen)3]2+, a prototypical spin crossover complex that undergoes light-induced excited spin state trapping forming an electronic excited state with a 0.6-0.7 ns lifetime. In addition, we report transient Fe Kβ main line and valence-to-core x-ray emission spectra, showing a unique detection sensitivity and an excellent agreement with model spectra and density functional theory calculations, respectively. Notably, the achieved signal-to-noise ratio, the overall performance, and the routine availability of the developed end-station have enabled a systematic time-resolved science program using the monochromatic beam at the Stanford Synchrotron Radiation Lightsource.
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Affiliation(s)
- Marco Reinhard
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - Dean Skoien
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | | | | | | | - Jeff Corbett
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - Kai Tian
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - James Safranek
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - Eduardo Granados
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - Matthew Strader
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - Kelly J. Gaffney
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | | | - Thomas Kroll
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
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23
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Pollock CJ, Debefve LM. Resonant Excitation Unlocks Chemical Selectivity of Platinum Lβ Valence-to-Core X-ray Emission Spectra. Inorg Chem 2023; 62:13681-13691. [PMID: 37578150 PMCID: PMC10467576 DOI: 10.1021/acs.inorgchem.3c01930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Indexed: 08/15/2023]
Abstract
Valence-to-core X-ray emission spectroscopy (VtC XES) is an emerging technique that uses hard X-rays to probe the valence electronic structure of an absorbing atom. Despite finding varied applications for light elements and first row transition metals, little work has been done on heavier elements such as second and third row transition metals. This lack of application is at least partially due to the relatively low resolution of the data at the high energies required to measure these elements, which obscures the useful chemical information that can be extracted from the lower energy, higher resolution spectra of lighter elements. Herein, we collect data on a set of platinum-containing compounds and demonstrate that the VtC XES resolution can be dramatically enhanced by exciting the platinum atom in resonance with its L3-edge white line absorption. Whereas spectra excited using standard nonresonant absorption well above the Pt L3-edge display broad, unfeatured VtC regions, resonant XES (RXES) spectra have more than twofold improved resolution and are revealed to be rich in chemical information with the ability to distinguish between even closely related species. We further demonstrate that these RXES spectra may be used to selectively probe individual components of a mixture of Pt-containing compounds, establishing this technique as a viable probe for chemically complex samples. Lastly, it is shown that the spectra are interpretable using a molecular orbital framework and may be calculated using density functional theory, thus suggesting resonant excitation as a general strategy for extracting chemically useful information from heavy element VtC spectra.
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Affiliation(s)
- Christopher J. Pollock
- Cornell High Energy Synchrotron Source,
Wilson Laboratory, Cornell University, Ithaca, New York 14853, United States
| | - Louise M. Debefve
- Cornell High Energy Synchrotron Source,
Wilson Laboratory, Cornell University, Ithaca, New York 14853, United States
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24
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Rusanov AI, Chizhova NV, Likhonina AE, Mamardashvili NZ. Synthesis, Structures, and Spectral Properties of Octa(2,6-difluorophenyl)tetraazaporphyrin and Its Cu(II) and Ni(II) Complexes. RUSS J INORG CHEM+ 2023; 68:979-987. [DOI: 10.1134/s0036023623601137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2023] [Revised: 04/11/2023] [Accepted: 04/16/2023] [Indexed: 12/16/2024]
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25
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Lim H, Brueggemeyer MT, Transue WJ, Meier KK, Jones SM, Kroll T, Sokaras D, Kelemen B, Hedman B, Hodgson KO, Solomon EI. Kβ X-ray Emission Spectroscopy of Cu(I)-Lytic Polysaccharide Monooxygenase: Direct Observation of the Frontier Molecular Orbital for H 2O 2 Activation. J Am Chem Soc 2023; 145:16015-16025. [PMID: 37441786 PMCID: PMC10557184 DOI: 10.1021/jacs.3c04048] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/15/2023]
Abstract
Lytic polysaccharide monooxygenases (LPMOs) catalyze the degradation of recalcitrant carbohydrate polysaccharide substrates. These enzymes are characterized by a mononuclear Cu(I) active site with a three-coordinate T-shaped "His-brace" configuration including the N-terminal histidine and its amine group as ligands. This study explicitly investigates the electronic structure of the d10 Cu(I) active site in a LPMO using Kβ X-ray emission spectroscopy (XES). The lack of inversion symmetry in the His-brace site enables the 3d/p mixing required for intensity in the Kβ valence-to-core (VtC) XES spectrum of Cu(I)-LPMO. These Kβ XES data are correlated to density functional theory (DFT) calculations to define the bonding, and in particular, the frontier molecular orbital (FMO) of the Cu(I) site. These experimentally validated DFT calculations are used to evaluate the reaction coordinate for homolytic cleavage of the H2O2 O-O bond and understand the contribution of this FMO to the low barrier of this reaction and how the geometric and electronic structure of the Cu(I)-LPMO site is activated for rapid reactivity with H2O2.
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Affiliation(s)
- Hyeongtaek Lim
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | | | - Wesley J Transue
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Katlyn K Meier
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Stephen M Jones
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Thomas Kroll
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, United States
| | - Dimosthenis Sokaras
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, United States
| | - Bradley Kelemen
- IFF Health and Biosciences, Palo Alto, California 94304, United States
| | - Britt Hedman
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, United States
| | - Keith O Hodgson
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, United States
| | - Edward I Solomon
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, United States
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26
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Tamasaku K, Taguchi M, Inoue I, Osaka T, Inubushi Y, Yabashi M, Ishikawa T. Two-dimensional Kβ-Kα fluorescence spectrum by nonlinear resonant inelastic X-ray scattering. Nat Commun 2023; 14:4262. [PMID: 37460582 PMCID: PMC10352240 DOI: 10.1038/s41467-023-39967-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Accepted: 07/05/2023] [Indexed: 07/20/2023] Open
Abstract
High sensitivity of the Kβ fluorescence spectrum to electronic state is widely used to investigate spin and oxidation state of first-row transition-metal compounds. However, the complex electronic structure results in overlapping spectral features, and the interpretation may be hampered by ambiguity in resolving the spectrum into components representing different electronic states. Here, we tackle this difficulty with a nonlinear resonant inelastic X-ray scattering (RIXS) scheme, where we leverage sequential two-photon absorption to realize an inverse process of the Kβ emission, and measure the successive Kα emission. The nonlinear RIXS reveals two-dimensional (2D) Kβ-Kα fluorescence spectrum of copper metal, leading to better understanding of the spectral feature. We isolate 3d-related satellite peaks in the 2D spectrum, and find good agreement with our multiplet ligand field calculation. Our work not only advances the fluorescence spectroscopy, but opens the door to extend RIXS into the nonlinear regime.
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Affiliation(s)
- Kenji Tamasaku
- RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5148, Japan.
- Japan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5198, Japan.
| | - Munetaka Taguchi
- Toshiba Nanoanalysis Corporation, 8 Shinsugita-cho, Isogo-ku, Yokohama, Kanagawa, 235-8522, Japan.
| | - Ichiro Inoue
- RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5148, Japan
| | - Taito Osaka
- RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5148, Japan
| | - Yuichi Inubushi
- RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5148, Japan
- Japan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5198, Japan
| | - Makina Yabashi
- RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5148, Japan
- Japan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5198, Japan
| | - Tetsuya Ishikawa
- RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5148, Japan
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27
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Reinhard M, Gallo A, Guo M, Garcia-Esparza AT, Biasin E, Qureshi M, Britz A, Ledbetter K, Kunnus K, Weninger C, van Driel T, Robinson J, Glownia JM, Gaffney KJ, Kroll T, Weng TC, Alonso-Mori R, Sokaras D. Ferricyanide photo-aquation pathway revealed by combined femtosecond Kβ main line and valence-to-core x-ray emission spectroscopy. Nat Commun 2023; 14:2443. [PMID: 37147295 PMCID: PMC10163258 DOI: 10.1038/s41467-023-37922-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2022] [Accepted: 03/30/2023] [Indexed: 05/07/2023] Open
Abstract
Reliably identifying short-lived chemical reaction intermediates is crucial to elucidate reaction mechanisms but becomes particularly challenging when multiple transient species occur simultaneously. Here, we report a femtosecond x-ray emission spectroscopy and scattering study of the aqueous ferricyanide photochemistry, utilizing the combined Fe Kβ main and valence-to-core emission lines. Following UV-excitation, we observe a ligand-to-metal charge transfer excited state that decays within 0.5 ps. On this timescale, we also detect a hitherto unobserved short-lived species that we assign to a ferric penta-coordinate intermediate of the photo-aquation reaction. We provide evidence that bond photolysis occurs from reactive metal-centered excited states that are populated through relaxation of the charge transfer excited state. Beyond illuminating the elusive ferricyanide photochemistry, these results show how current limitations of Kβ main line analysis in assigning ultrafast reaction intermediates can be circumvented by simultaneously using the valence-to-core spectral range.
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Affiliation(s)
- Marco Reinhard
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
| | | | - Meiyuan Guo
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | | | - Elisa Biasin
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA
| | | | | | - Kathryn Ledbetter
- Department of Physics, Stanford University, Stanford, CA, USA
- Department of Physics, Harvard University, Cambridge, MA, USA
| | | | - Clemens Weninger
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA
- MAX IV Laboratory, Lund University, Lund, Sweden
| | - Tim van Driel
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | | | | | | | - Thomas Kroll
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Tsu-Chien Weng
- School of Physical Science and Technology, ShanghaiTech University, Shanghai, China
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28
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Kovel CB, Darmon JM, Stieber SCE, Pombar G, Pabst TP, Theis B, Turner ZR, Üngör Ö, Shatruk M, DeBeer S, Chirik PJ. Bimolecular Reductive Elimination of Ethane from Pyridine(diimine) Iron Methyl Complexes: Mechanism, Electronic Structure, and Entry into [2+2] Cycloaddition Catalysis. J Am Chem Soc 2023; 145:5061-5073. [PMID: 36821524 DOI: 10.1021/jacs.2c10547] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/24/2023]
Abstract
The application of bimolecular reductive elimination to the activation of iron catalysts for alkene-diene cycloaddition is described. Key to this approach was the synthesis, characterization, electronic structure determination, and ultimately solution stability of a family of pyridine(diimine) iron methyl complexes with diverse steric properties and electronic ground states. Both the aryl-substituted, (MePDI)FeCH3 and (EtPDI)FeCH3 (RPDI = 2,6-(2,6-R2-C6H3N═CMe)2C5H3N), and the alkyl-substituted examples, (CyAPDI)FeCH3 (CyAPDI = 2,6-(C6H11N═CMe)2C5H3N), have molecular structures significantly distorted from planarity and S = 3/2 ground states. The related N-arylated derivative bearing 2,6-di-isopropyl aryl substituents, (iPrPDI)FeCH3, has an idealized planar geometry and exhibits spin crossover behavior from S = 1/2 to S = 3/2 states. At 23 °C under an N2 atmosphere, both (MePDI)FeCH3 and (EtPDI)FeCH3 underwent reductive elimination of ethane to form the iron dinitrogen precatalysts, [(MePDI)Fe(N2)]2(μ-N2) and [(EtPDI)Fe(N2)]2(μ-N2), respectively, while (iPrPDI)FeCH3 proved inert to C-C bond formation. By contrast, addition of butadiene to all three iron methyl complexes induced ethane formation and generated the corresponding iron butadiene complexes, (RPDI)Fe(η4-C4H6) (R = Me, Et, iPr), known precatalysts for the [2+2] cycloaddition of olefins and dienes. Kinetic, crossover experiments, and structural studies were combined with magnetic measurements and Mössbauer spectroscopy to elucidate the electronic and steric features of the iron complexes that enable this unusual reductive elimination and precatalyst activation pathway. Transmetalation of methyl groups between iron centers was fast at ambient temperature and independent of steric environment or spin state, while the intermediate dimer underwent the sterically controlled rate-determining reaction with either N2 or butadiene to access a catalytically active iron compound.
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Affiliation(s)
- Carli B Kovel
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Jonathan M Darmon
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - S Chantal E Stieber
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Gisselle Pombar
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Tyler P Pabst
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Bastian Theis
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Zoë R Turner
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Ökten Üngör
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - Michael Shatruk
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - Serena DeBeer
- Max Planck Institute for Chemical Energy Conversion, Stiftstraße 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Paul J Chirik
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
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29
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Majumder R, Sokolov AY. Simulating Spin-Orbit Coupling with Quasidegenerate N-Electron Valence Perturbation Theory. J Phys Chem A 2023; 127:546-559. [PMID: 36599072 DOI: 10.1021/acs.jpca.2c07952] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
We present the first implementation of spin-orbit coupling effects in fully internally contracted second-order quasidegenerate N-electron valence perturbation theory (SO-QDNEVPT2). The SO-QDNEVPT2 approach enables the computations of ground- and excited-state energies and oscillator strengths combining the description of static electron correlation with an efficient treatment of dynamic correlation and spin-orbit coupling. In addition to SO-QDNEVPT2 with the full description of one- and two-body spin-orbit interactions at the level of two-component Breit-Pauli Hamiltonian, our implementation also features a simplified approach that takes advantage of spin-orbit mean-field approximation (SOMF-QDNEVPT2). The accuracy of these methods is tested for the group 14 and 16 hydrides, 3d and 4d transition metal ions, and two actinide dioxides (neptunyl and plutonyl dications). The zero-field splittings of group 14 and 16 molecules computed using SO-QDNEVPT2 and SOMF-QDNEVPT2 are in good agreement with the available experimental data. For the 3d transition metal ions, the SO-QDNEVPT2 method is significantly more accurate than SOMF-QDNEVPT2, while no substantial difference in the performance of two methods is observed for the 4d ions. Finally, we demonstrate that for the actinide dioxides the results of SO-QDNEVPT2 and SOMF-QDNEVPT2 are in good agreement with the data from previous theoretical studies of these systems. Overall, our results demonstrate that SO-QDNEVPT2 and SOMF-QDNEVPT2 are promising multireference methods for treating spin-orbit coupling with a relatively low computational cost.
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Affiliation(s)
- Rajat Majumder
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio43210, United States
| | - Alexander Yu Sokolov
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio43210, United States
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30
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Emamian S, Ireland KA, Purohit V, McWhorter KL, Maximova O, Allen W, Jensen S, Casa DM, Pushkar Y, Davis KM. X-ray Emission Spectroscopy of Single Protein Crystals Yields Insights into Heme Enzyme Intermediates. J Phys Chem Lett 2023; 14:41-48. [PMID: 36566390 PMCID: PMC9990082 DOI: 10.1021/acs.jpclett.2c03018] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Enzyme reactivity is often enhanced by changes in oxidation state, spin state, and metal-ligand covalency of associated metallocofactors. The development of spectroscopic methods for studying these processes coincidentally with structural rearrangements is essential for elucidating metalloenzyme mechanisms. Herein, we demonstrate the feasibility of collecting X-ray emission spectra of metalloenzyme crystals at a third-generation synchrotron source. In particular, we report the development of a von Hamos spectrometer for the collection of Fe Kβ emission optimized for analysis of dilute biological samples. We further showcase its application in crystals of the immunosuppressive heme-dependent enzyme indoleamine 2,3-dioxygenase. Spectra from protein crystals in different states were compared with relevant reference compounds. Complementary density functional calculations assessing covalency support our spectroscopic analysis and identify active site conformations that correlate to high- and low-spin states. These experiments validate the suitability of an X-ray emission approach for determining spin states of previously uncharacterized metalloenzyme reaction intermediates.
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Affiliation(s)
- Sahand Emamian
- Department of Physics, Emory University, Atlanta, GA 30322, USA
| | | | - Vatsal Purohit
- Department of Chemistry, Emory University, Atlanta, GA 30322, USA
| | | | - Olga Maximova
- Department of Physics and Astronomy, Purdue University, West Lafayette, IN 47907, USA
| | - Winter Allen
- Department of Physics and Astronomy, Purdue University, West Lafayette, IN 47907, USA
| | - Scott Jensen
- Department of Physics and Astronomy, Purdue University, West Lafayette, IN 47907, USA
| | - Diego M. Casa
- Advanced Photon Source, Argonne National Laboratory, Lemont, IL 60439, USA
| | - Yulia Pushkar
- Department of Physics and Astronomy, Purdue University, West Lafayette, IN 47907, USA
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31
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Samal B, Voora VK. Modeling Nonresonant X-ray Emission of Second- and Third-Period Elements without Core-Hole Reference States and Empirical Parameters. J Chem Theory Comput 2022; 18:7272-7285. [PMID: 36350224 DOI: 10.1021/acs.jctc.2c00647] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Nonresonant X-ray emission (XE) energies and oscillator strengths are obtained using the effective potential of the generalized Kohn-Sham semi-canonical projected random phase approximation (GKS-spRPA) method. XE energies are estimated as a difference between the valence and core ionization eigenvalues, while the oscillator strengths are obtained within a frozen orbital approximation. This straightforward approach provides accurate XE energies without any need for core-hole reference states, empirical shifting parameters, or tuning of density functionals. To account for relativistic corrections to the core orbitals, we have formulated a scalar relativistic (sr) GKS-spRPA approach based on the spin-free X2C one-electron Hamiltonian. The sr-GKS-spRPA method provides highly reliable XE energies using uncontracted basis-sets on atoms where the core-hole is created prior to emission. For the largest basis-sets used in our study, using completely uncontracted polarized core-valence Dunning basis-sets, the mean absolute errors (MAEs) are within 0.7 eV compared to experimental reference values for a test-set consisting of 27 valence-to-core XE energies of molecules with second- and third-period elements. Considering a balance of accuracy and computational effort, we recommend the use of s-uncontracted def2-TZVP for second-period and all-uncontracted def2-TZVP for third-period elements. For this recommended basis-set, the MAE is 0.2 eV. The analytically continued sr-GKS-spRPA approach, with an O(N4) computational cost, enables efficient computation of XE spectra of molecules such as S8 and C60 with several core-hole states.
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Affiliation(s)
- Bibek Samal
- Department of Chemical Sciences, Tata Institute of Fundamental Research, Homi Bhabha Road, Colaba, Mumbai400005, India
| | - Vamsee K Voora
- Department of Chemical Sciences, Tata Institute of Fundamental Research, Homi Bhabha Road, Colaba, Mumbai400005, India
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32
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Rusanov A, Chizhova N, Mamardashvili N. Synthesis, Structure, and Spectral-Luminescent Properties of Peripherally Fluorinated Mg(II) and Zn(II) Octaphenyltetraazaporphyrins. Molecules 2022; 27:8619. [PMID: 36500711 PMCID: PMC9739735 DOI: 10.3390/molecules27238619] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Revised: 12/01/2022] [Accepted: 12/02/2022] [Indexed: 12/12/2022] Open
Abstract
The cyclization of di-(2,6-difluorophenyl)maleindinitrile with magnesium(II) and zinc(II) acetates in boiling ethylene glycol is applied to synthesize Mg(II) and Zn(II) complexes of the octa-(2,6-difluorophenyl)tetraazaporphyrin. The compounds are identified by UV-Vis, 1H NMR, and mass spectrometry methods. A comparative analysis is performed of the spectral-luminescent properties of magnesium and zinc octaaryltetraazaporphyrinates and their dependence on the number and position of the fluorine atoms in the macrocycle phenyl fragments. The DFT method is used to optimize the geometry of the synthesized complexes. Machine learning methods and QSPR are applied to predict the Soret band wavelength in the UV-V is spectra of the complexes described.
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Affiliation(s)
- Alexey Rusanov
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, Akademicheskaya St. 1, 153045 Ivanovo, Russia
- Ivanovo State University of Chemistry and Technology, Sheremetevsky Pr. 7, 153460 Ivanovo, Russia
| | - Natalya Chizhova
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, Akademicheskaya St. 1, 153045 Ivanovo, Russia
| | - Nugzar Mamardashvili
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, Akademicheskaya St. 1, 153045 Ivanovo, Russia
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33
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Penfold TJ, Rankine CD. A deep neural network for valence-to-core X-ray emission spectroscopy. Mol Phys 2022. [DOI: 10.1080/00268976.2022.2123406] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
Affiliation(s)
- T. J. Penfold
- Chemistry–School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, UK
| | - C. D. Rankine
- Chemistry–School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, UK
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34
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Tatevosyan MM, Vlasenko VG, Zhukova TN. ELECTRONIC STRUCTURE AND CHEMICAL BOND IN 9,9,10,10-TETRAETHYNYL-9,10- DIHYDRODISILAANTHRACENE. J STRUCT CHEM+ 2022. [DOI: 10.1134/s0022476622090141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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35
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Cutsail GE, Banerjee R, Rice DB, McCubbin Stepanic O, Lipscomb JD, DeBeer S. Determination of the iron(IV) local spin states of the Q intermediate of soluble methane monooxygenase by Kβ X-ray emission spectroscopy. J Biol Inorg Chem 2022; 27:573-582. [PMID: 35988092 PMCID: PMC9470658 DOI: 10.1007/s00775-022-01953-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Accepted: 08/07/2022] [Indexed: 11/29/2022]
Abstract
Soluble methane monooxygenase (sMMO) facilitates the conversion of methane to methanol at a non-heme FeIV2 intermediate MMOHQ, which is formed in the active site of the sMMO hydroxylase component (MMOH) during the catalytic cycle. Other biological systems also employ high-valent FeIV sites in catalysis; however, MMOHQ is unique as Nature’s only identified FeIV2 intermediate. Previous 57Fe Mössbauer spectroscopic studies have shown that MMOHQ employs antiferromagnetic coupling of the two FeIV sites to yield a diamagnetic cluster. Unfortunately, this lack of net spin prevents the determination of the local spin state (Sloc) of each of the irons by most spectroscopic techniques. Here, we use Fe Kβ X-ray emission spectroscopy (XES) to characterize the local spin states of the key intermediates of the sMMO catalytic cycle, including MMOHQ trapped by rapid-freeze-quench techniques. A pure XES spectrum of MMOHQ is obtained by subtraction of the contributions from other reaction cycle intermediates with the aid of Mössbauer quantification. Comparisons of the MMOHQ spectrum with those of known Sloc = 1 and Sloc = 2 FeIV sites in chemical and biological models reveal that MMOHQ possesses Sloc = 2 iron sites. This experimental determination of the local spin state will help guide future computational and mechanistic studies of sMMO catalysis.
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Affiliation(s)
- George E Cutsail
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470, Mülheim an der Ruhr, Germany.
- Institute of Inorganic Chemistry, University of Duisburg-Essen, Universitätsstrasse 5-7, 45117, Essen, Germany.
| | - Rahul Banerjee
- Department of Biochemistry Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN, 55455, USA
| | - Derek B Rice
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470, Mülheim an der Ruhr, Germany
| | - Olivia McCubbin Stepanic
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470, Mülheim an der Ruhr, Germany
| | - John D Lipscomb
- Department of Biochemistry Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN, 55455, USA
| | - Serena DeBeer
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470, Mülheim an der Ruhr, Germany.
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36
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Tetef S, Kashyap V, Holden WM, Velian A, Govind N, Seidler GT. Informed Chemical Classification of Organophosphorus Compounds via Unsupervised Machine Learning of X-ray Absorption Spectroscopy and X-ray Emission Spectroscopy. J Phys Chem A 2022; 126:4862-4872. [PMID: 35839329 DOI: 10.1021/acs.jpca.2c03635] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We analyze an ensemble of organophosphorus compounds to form an unbiased characterization of the information encoded in their X-ray absorption near-edge structure (XANES) and valence-to-core X-ray emission spectra (VtC-XES). Data-driven emergence of chemical classes via unsupervised machine learning, specifically cluster analysis in the Uniform Manifold Approximation and Projection (UMAP) embedding, finds spectral sensitivity to coordination, oxidation, aromaticity, intramolecular hydrogen bonding, and ligand identity. Subsequently, we implement supervised machine learning via Gaussian process classifiers to identify confidence in predictions that match our initial qualitative assessments of clustering. The results further support the benefit of utilizing unsupervised machine learning as a precursor to supervised machine learning, which we term Unsupervised Validation of Classes (UVC), a result that goes beyond the present case of X-ray spectroscopies.
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Affiliation(s)
- Samantha Tetef
- Department of Physics, University of Washington, Seattle, Washington 98195, United States
| | - Vikram Kashyap
- Department of Physics, University of Washington, Seattle, Washington 98195, United States
| | - William M Holden
- Department of Physics, University of Washington, Seattle, Washington 98195, United States
| | - Alexandra Velian
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Niranjan Govind
- Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Gerald T Seidler
- Department of Physics, University of Washington, Seattle, Washington 98195, United States
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37
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Nascimento DR, Govind N. Computational approaches for XANES, VtC-XES, and RIXS using linear-response time-dependent density functional theory based methods. Phys Chem Chem Phys 2022; 24:14680-14691. [PMID: 35699090 DOI: 10.1039/d2cp01132h] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
The emergence of state-of-the-art X-ray light sources has paved the way for novel spectroscopies that take advantage of their atomic specificity to shed light on fundamental physical, chemical, and biological processes both in the static and time domains. The success of these experiments hinges on the ability to interpret and predict core-level spectra, which has opened avenues for theory to play a key role. Over the last two decades, linear-response time-dependent density functional theory (LR-TDDFT), despite various theoretical challenges, has become a computationally attractive and versatile framework to study excited-state spectra including X-ray spectroscopies. In this context, we focus our discussion on LR-TDDFT approaches for the computation of X-ray Near-Edge Structure (XANES), Valence-to-Core X-ray Emission (VtC-XES), and Resonant Inelastic X-ray Scattering (RIXS) spectroscopies in molecular systems with an emphasis on Gaussian basis set implementations. We illustrate these approaches with applications and provide a brief outlook of possible new directions.
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Affiliation(s)
- Daniel R Nascimento
- Department of Chemistry, The University of Memphis, Memphis, TN, 38152, USA.
| | - Niranjan Govind
- Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.
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38
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Brumboiu IE, Fransson T. Core-hole delocalization for modeling X-ray spectroscopies: A cautionary tale. J Chem Phys 2022; 156:214109. [DOI: 10.1063/5.0088195] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The influence of core-hole delocalization for X-ray photoelectron, X-ray absorption, and X-ray emission spectrum calculations is investigated in detail, using approaches including response theory, transition-potential methods, and ground state schemes. The question of a localized/delocalized vacancy is relevant for systems with symmetrically equivalent atoms, as well as near-degeneracies which can distribute the core-orbitals over several atoms. We show that issues relating to core-hole delocalization are present for calculations considering explicit core-hole states, e.g. when using a core-excited or core-ionized reference state, or for fractional occupation numbers. Including electron correlation eventually alleviates the issues, but even using CCSD(T) there is a noticable discrepancy between core-ionization energies obtained with a localized and delocalized core-hole (0.5 eV for the carbon K-edge). Within density functional theory, the discrepancy correlates to the exchange interaction involving the core orbitals of the same spin symmetry as the delocalized core-hole. The use of a localized core-hole allows for a reasonably good inclusion of relaxation at lower level of theory, whereas the proper symmetry solution involving a delocalized core-hole requires higher levels of theory to account for the correlation effects involved in orbital relaxation. For linear response methods, we further show that if X-ray absorption spectra are modelled by considering symmetry-unique sets of atoms, care has to be taken such that there are no delocalizations of the core orbitals, which would otherwise introduce shifts in absolute energies and relative features.
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Affiliation(s)
- Iulia Emilia Brumboiu
- Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University in Torun Institute of Physics, Poland
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39
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Cutsail III GE, DeBeer S. Challenges and Opportunities for Applications of Advanced X-ray Spectroscopy in Catalysis Research. ACS Catal 2022. [DOI: 10.1021/acscatal.2c01016] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- George E. Cutsail III
- Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470 Mülheim an der Ruhr, Germany
- Institute of Inorganic Chemistry, University of Duisburg-Essen, Universitätsstr. 5-7, 45117 Essen, Germany
| | - Serena DeBeer
- Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470 Mülheim an der Ruhr, Germany
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40
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Chizhova NV, Dmitrieva OA, Mamardashvili NZ. Synthesis, Structure, and Spectral Properties of Perhalogenated Metalloporphyrins. RUSS J INORG CHEM+ 2022; 67:267-275. [DOI: 10.1134/s0036023622030056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Revised: 10/26/2021] [Accepted: 10/27/2021] [Indexed: 02/05/2023]
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41
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Henthorn JT, DeBeer S. Selenium Valence-to-Core X-ray Emission Spectroscopy and Kβ HERFD X-ray Absorption Spectroscopy as Complementary Probes of Chemical and Electronic Structure. Inorg Chem 2022; 61:2760-2767. [PMID: 35113562 PMCID: PMC8848279 DOI: 10.1021/acs.inorgchem.1c02802] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
Abstract
![]()
Selenium X-ray absorption
spectroscopy (XAS) has found widespread
use in investigations of Se-containing materials, geochemical processes,
and biologically active sites. In contrast to sulfur Kβ X-ray
emission spectroscopy (XES), which has been found to contain electronic
and structural information complementary to S XAS, Se Kβ XES
remains comparatively underexplored. Herein, we present the first
Se Valence-to-Core (VtC) XES studies of reduced Se-containing compounds
and FeSe dimers. Se VtC XES is found to be sensitive to changes in
covalent Se bonding interactions (Se–Se/Se–C/Se–H
bonding) while being relatively insensitive to changes in Fe oxidation
states as selenide bridges in FeSe dimers ([Fe2Se2]2+ vs [Fe2Se2]+). In
contrast, Se Kβ HERFD XAS is demonstrated to be quite sensitive
to changes in the Fe oxidation state with Se Kβ HERFD XAS demonstrating
experimental resolution equivalent to Kα HERFD XAS. Additionally,
computational studies reveal both Se VtC XES and XAS to be sensitive
to selenium protonation in FeSe complexes. Selenium is a trace element that plays
vital roles in biological
and geochemical cycles, energy storage, photovoltaics, and nanomaterials.
Herein, selenium Valence-to-Core X-ray emission spectroscopy is explored
as a new method of probing the chemical and electronic structure in
selenium-containing compounds, demonstrating sensitivity to selenium
bonding interactions. When paired with high-resolution Se X-ray absorption
spectroscopy (HERFD XAS), these two methods have the potential to
reveal greater insight into protonation and redox changes of Se-substituted
FeS clusters.
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Affiliation(s)
- Justin T Henthorn
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Serena DeBeer
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany
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42
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Geoghegan BL, Liu Y, Peredkov S, Dechert S, Meyer F, DeBeer S, Cutsail GE. Combining Valence-to-Core X-ray Emission and Cu K-edge X-ray Absorption Spectroscopies to Experimentally Assess Oxidation State in Organometallic Cu(I)/(II)/(III) Complexes. J Am Chem Soc 2022; 144:2520-2534. [PMID: 35050605 PMCID: PMC8855422 DOI: 10.1021/jacs.1c09505] [Citation(s) in RCA: 46] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
A series of organometallic
copper complexes in formal oxidation
states ranging from +1 to +3 have been characterized by a combination
of Cu K-edge X-ray absorption (XAS) and Cu Kβ valence-to-core
X-ray emission spectroscopies (VtC XES). Each formal oxidation state
exhibits distinctly different XAS and VtC XES transition energies
due to the differences in the Cu Zeff, concomitant with
changes in physical oxidation state from +1 to +2 to +3. Herein, we
demonstrate the sensitivity of XAS and VtC XES to the physical oxidation
states of a series of N-heterocyclic carbene (NHC) ligated organocopper
complexes. We then extend these methods to the study of the [Cu(CF3)4]− ion. Complemented by computational
methods, the observed spectral transitions are correlated with the
electronic structure of the complexes and the Cu Zeff.
These calculations demonstrate that a contraction of the Cu 1s orbitals
to deeper binding energy upon oxidation of the Cu center manifests
spectroscopically as a stepped increase in the energy of both XAS
and Kβ2,5 emission features with increasing formal
oxidation state within the [Cun+(NHC2)]n+ series. The newly synthesized Cu(III) cation
[CuIII(NHC4)]3+ exhibits spectroscopic
features and an electronic structure remarkably similar to [Cu(CF3)4]−, supporting a physical oxidation
state assignment of low-spin d8 Cu(III) for [Cu(CF3)4]−. Combining XAS and VtC XES
further demonstrates the necessity of combining multiple spectroscopies
when investigating the electronic structures of highly covalent copper
complexes, providing a template for future investigations into both
synthetic and biological metal centers.
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Affiliation(s)
- Blaise L. Geoghegan
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
- Institute of Inorganic Chemistry, University of Duisburg-Essen, Universitätsstrasse 5-7, 45117 Essen, Germany
| | - Yang Liu
- Institute of Inorganic Chemistry, University of Göttingen, Tammannstrasse 4, 37077 Göttingen, Germany
| | - Sergey Peredkov
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Sebastian Dechert
- Institute of Inorganic Chemistry, University of Göttingen, Tammannstrasse 4, 37077 Göttingen, Germany
| | - Franc Meyer
- Institute of Inorganic Chemistry, University of Göttingen, Tammannstrasse 4, 37077 Göttingen, Germany
| | - Serena DeBeer
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
| | - George E. Cutsail
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
- Institute of Inorganic Chemistry, University of Duisburg-Essen, Universitätsstrasse 5-7, 45117 Essen, Germany
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43
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Gerz I, Jannuzzi SAV, Hylland KT, Negri C, Wragg DS, Øien‐Ødegaard S, Tilset M, Olsbye U, DeBeer S, Amedjkouh M. Structural Elucidation, Aggregation, and Dynamic Behaviour of N,N,N,N-Copper(I) Schiff Base Complexes in Solid and in Solution: A Combined NMR, X-ray Spectroscopic and Crystallographic Investigation. Eur J Inorg Chem 2021; 2021:4762-4775. [PMID: 35874966 PMCID: PMC9298233 DOI: 10.1002/ejic.202100722] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Revised: 09/22/2021] [Indexed: 12/30/2022]
Abstract
A series of Cu(I) complexes of bidentate or tetradentate Schiff base ligands bearing either 1-H-imidazole or pyridine moieties were synthesized. The complexes were studied by a combination of NMR and X-ray spectroscopic techniques. The differences between the imidazole- and pyridine-based ligands were examined by 1H, 13C and 15N NMR spectroscopy. The magnitude of the 15Nimine coordination shifts was found to be strongly affected by the nature of the heterocycle in the complexes. These trends showed good correlation with the obtained Cu-Nimine bond lengths from single-crystal X-ray diffraction measurements. Variable-temperature NMR experiments, in combination with diffusion ordered spectroscopy (DOSY) revealed that one of the complexes underwent a temperature-dependent interconversion between a monomer, a dimer and a higher aggregate. The complexes bearing tetradentate imidazole ligands were further studied using Cu K-edge XAS and VtC XES, where DFT-assisted assignment of spectral features suggested that these complexes may form polynuclear oligomers in solid state. Additionally, the Cu(II) analogue of one of the complexes was incorporated into a metal-organic framework (MOF) as a way to obtain discrete, mononuclear complexes in the solid state.
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Affiliation(s)
- Isabelle Gerz
- Department of ChemistryUniversity of OsloP. O. Box 1033 Blindern0315OsloNorway
- Centre for Materials Science and NanotechnologyUniversity of OsloP.O. Box 1126 Blindern0316OsloNorway
| | | | - Knut T. Hylland
- Department of ChemistryUniversity of OsloP. O. Box 1033 Blindern0315OsloNorway
- Centre for Materials Science and NanotechnologyUniversity of OsloP.O. Box 1126 Blindern0316OsloNorway
| | - Chiara Negri
- Department of ChemistryUniversity of OsloP. O. Box 1033 Blindern0315OsloNorway
- Centre for Materials Science and NanotechnologyUniversity of OsloP.O. Box 1126 Blindern0316OsloNorway
| | - David S. Wragg
- Department of ChemistryUniversity of OsloP. O. Box 1033 Blindern0315OsloNorway
- Centre for Materials Science and NanotechnologyUniversity of OsloP.O. Box 1126 Blindern0316OsloNorway
| | - Sigurd Øien‐Ødegaard
- Department of ChemistryUniversity of OsloP. O. Box 1033 Blindern0315OsloNorway
- Centre for Materials Science and NanotechnologyUniversity of OsloP.O. Box 1126 Blindern0316OsloNorway
| | - Mats Tilset
- Department of ChemistryUniversity of OsloP. O. Box 1033 Blindern0315OsloNorway
- Centre for Materials Science and NanotechnologyUniversity of OsloP.O. Box 1126 Blindern0316OsloNorway
| | - Unni Olsbye
- Department of ChemistryUniversity of OsloP. O. Box 1033 Blindern0315OsloNorway
- Centre for Materials Science and NanotechnologyUniversity of OsloP.O. Box 1126 Blindern0316OsloNorway
| | - Serena DeBeer
- Department of Inorganic SpectroscopyMax Planck Institute for Chemical Energy ConversionStiftstraße 34–3645470Mülheim an der RuhrGermany
| | - Mohamed Amedjkouh
- Department of ChemistryUniversity of OsloP. O. Box 1033 Blindern0315OsloNorway
- Centre for Materials Science and NanotechnologyUniversity of OsloP.O. Box 1126 Blindern0316OsloNorway
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44
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Wang CH, DeBeer S. Structure, reactivity, and spectroscopy of nitrogenase-related synthetic and biological clusters. Chem Soc Rev 2021; 50:8743-8761. [PMID: 34159992 DOI: 10.1039/d1cs00381j] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
The reduction of dinitrogen (N2) is essential for its incorporation into nucleic acids and amino acids, which are vital to life on earth. Nitrogenases convert atmospheric dinitrogen to two ammonia molecules (NH3) under ambient conditions. The catalytic active sites of these enzymes (known as FeM-cofactor clusters, where M = Mo, V, Fe) are the sites of N2 binding and activation and have been a source of great interest for chemists for decades. In this review, recent studies on nitrogenase-related synthetic molecular complexes and biological clusters are discussed, with a focus on their reactivity and spectroscopic characterization. The molecular models that are discussed span from simple mononuclear iron complexes to multinuclear iron complexes and heterometallic iron complexes. In addition, recent work on the extracted biological cofactors is discussed. An emphasis is placed on how these studies have contributed towards our understanding of the electronic structure and mechanism of nitrogenases.
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Affiliation(s)
- Chen-Hao Wang
- Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470 Mülheim an der Ruhr, Germany.
| | - Serena DeBeer
- Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470 Mülheim an der Ruhr, Germany.
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45
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Huyke DA, Ramachandran A, Ramirez-Neri O, Guerrero-Cruz JA, Gee LB, Braun A, Sokaras D, Garcia-Estrada B, Solomon EI, Hedman B, Delgado-Jaime MU, DePonte DP, Kroll T, Santiago JG. Millisecond timescale reactions observed via X-ray spectroscopy in a 3D microfabricated fused silica mixer. JOURNAL OF SYNCHROTRON RADIATION 2021; 28:1100-1113. [PMID: 34212873 PMCID: PMC8284405 DOI: 10.1107/s1600577521003830] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Accepted: 04/09/2021] [Indexed: 06/13/2023]
Abstract
Determination of electronic structures during chemical reactions remains challenging in studies which involve reactions in the millisecond timescale, toxic chemicals, and/or anaerobic conditions. In this study, a three-dimensionally (3D) microfabricated microfluidic mixer platform that is compatible with time-resolved X-ray absorption and emission spectroscopy (XAS and XES, respectively) is presented. This platform, to initiate reactions and study their progression, mixes a high flow rate (0.50-1.5 ml min-1) sheath stream with a low-flow-rate (5-90 µl min-1) sample stream within a monolithic fused silica chip. The chip geometry enables hydrodynamic focusing of the sample stream in 3D and sample widths as small as 5 µm. The chip is also connected to a polyimide capillary downstream to enable sample stream deceleration, expansion, and X-ray detection. In this capillary, sample widths of 50 µm are demonstrated. Further, convection-diffusion-reaction models of the mixer are presented. The models are experimentally validated using confocal epifluorescence microscopy and XAS/XES measurements of a ferricyanide and ascorbic acid reaction. The models additionally enable prediction of the residence time and residence time uncertainty of reactive species as well as mixing times. Residence times (from initiation of mixing to the point of X-ray detection) during sample stream expansion as small as 2.1 ± 0.3 ms are also demonstrated. Importantly, an exploration of the mixer operational space reveals a theoretical minimum mixing time of 0.91 ms. The proposed platform is applicable to the determination of the electronic structure of conventionally inaccessible reaction intermediates.
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Affiliation(s)
| | | | | | | | | | | | - Dimosthenis Sokaras
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA 94025, USA
| | | | - Edward I. Solomon
- Stanford University, Stanford, CA 94305, USA
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA 94025, USA
| | - Britt Hedman
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA 94025, USA
| | | | - Daniel P. DePonte
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA 94025, USA
| | - Thomas Kroll
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA 94025, USA
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46
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Gaffney KJ. Capturing photochemical and photophysical transformations in iron complexes with ultrafast X-ray spectroscopy and scattering. Chem Sci 2021; 12:8010-8025. [PMID: 34194691 PMCID: PMC8208315 DOI: 10.1039/d1sc01864g] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2021] [Accepted: 05/25/2021] [Indexed: 12/31/2022] Open
Abstract
Light-driven chemical transformations provide a compelling approach to understanding chemical reactivity with the potential to use this understanding to advance solar energy and catalysis applications. Capturing the non-equilibrium trajectories of electronic excited states with precision, particularly for transition metal complexes, would provide a foundation for advancing both of these objectives. Of particular importance for 3d metal compounds is characterizing the population dynamics of charge-transfer (CT) and metal-centered (MC) electronic excited states and understanding how the inner coordination sphere structural dynamics mediate the interaction between these states. Recent advances in ultrafast X-ray laser science has enabled the electronic excited state dynamics in 3d metal complexes to be followed with unprecedented detail. This review will focus on simultaneous X-ray emission spectroscopy (XES) and X-ray solution scattering (XSS) studies of iron coordination and organometallic complexes. These simultaneous XES-XSS studies have provided detailed insight into the mechanism of light-induced spin crossover in iron coordination compounds, the interaction of CT and MC excited states in iron carbene photosensitizers, and the mechanism of Fe-S bond dissociation in cytochrome c.
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Affiliation(s)
- Kelly J Gaffney
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Stanford University Menlo Park California 94025 USA
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47
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Fedorenko AD, Semushkina GI, Peregudova NN, Lavrukhina SA, Gushchin AL, Fomenko YS, Sokolov MN, Gusel′nikov AV, Kalinkin AV, Nikolenko AD, Ivlyushkin DV, Zavertkin PS, Mazalov LN. STUDYING THE ELECTRONIC STRUCTURE OF TRINUCLEAR MOLYBDENUM CLUSTER SULFIDES WITH {Mo3S4} AND {Mo3S7} CORES BY X-RAY SPECTROSCOPY. J STRUCT CHEM+ 2021. [DOI: 10.1134/s0022476621060056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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48
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Dmitrieva OA, Chizhova NV, Tesakova MV, Parfenyuk VI, Mamardashvili NZ. Meso-nitro substitution as a means of Mn-octaethylporphyrin redox state controlling. J Organomet Chem 2021; 940:121790. [DOI: 10.1016/j.jorganchem.2021.121790] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
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49
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Mathe Z, McCubbin Stepanic O, Peredkov S, DeBeer S. Phosphorus Kβ X-ray emission spectroscopy detects non-covalent interactions of phosphate biomolecules in situ. Chem Sci 2021; 12:7888-7901. [PMID: 34168842 PMCID: PMC8188515 DOI: 10.1039/d1sc01266e] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
Phosphorus is ubiquitous in biochemistry, being found in the phosphate groups of nucleic acids and the energy-transferring system of adenine nucleotides (e.g. ATP). Kβ X-ray emission spectroscopy (XES) of phosphorus has been largely unexplored, with no previous applications to biomolecules. Here, the potential of P Kβ XES to study phosphate-containing biomolecules, including ATP and NADPH, is evaluated, as is the application of the technique to aqueous solution samples. P Kβ spectra offer a detailed picture of phosphate valence electronic structure, reporting on subtle non-covalent effects, such as hydrogen bonding and ionic interactions, that are key to enzymatic catalysis. Spectral features are interpreted using density functional theory (DFT) calculations, and potential applications to the study of biological energy conversion are highlighted. Phosphorus X-ray emission spectroscopy probes non-covalent interactions and electronic structure of phosphate biomolecules in both solid and solution samples.![]()
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Affiliation(s)
- Zachary Mathe
- Max Planck Institute for Chemical Energy Conversion Stiftstr. 34-36 D-45470 Mülheim an der Ruhr Germany
| | - Olivia McCubbin Stepanic
- Max Planck Institute for Chemical Energy Conversion Stiftstr. 34-36 D-45470 Mülheim an der Ruhr Germany
| | - Sergey Peredkov
- Max Planck Institute for Chemical Energy Conversion Stiftstr. 34-36 D-45470 Mülheim an der Ruhr Germany
| | - Serena DeBeer
- Max Planck Institute for Chemical Energy Conversion Stiftstr. 34-36 D-45470 Mülheim an der Ruhr Germany
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50
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Castillo RG, Hahn AW, Van Kuiken BE, Henthorn JT, McGale J, DeBeer S. Probing Physical Oxidation State by Resonant X-ray Emission Spectroscopy: Applications to Iron Model Complexes and Nitrogenase. Angew Chem Int Ed Engl 2021; 60:10112-10121. [PMID: 33497500 PMCID: PMC8252016 DOI: 10.1002/anie.202015669] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2020] [Indexed: 11/07/2022]
Abstract
The ability of resonant X-ray emission spectroscopy (XES) to recover physical oxidation state information, which may often be ambiguous in conventional X-ray spectroscopy, is demonstrated. By combining Kβ XES with resonant excitation in the XAS pre-edge region, resonant Kβ XES (or 1s3p RXES) data are obtained, which probe the 3dn+1 final-state configuration. Comparison of the non-resonant and resonant XES for a series of high-spin ferrous and ferric complexes shows that oxidation state assignments that were previously unclear are now easily made. The present study spans iron tetrachlorides, iron sulfur clusters, and the MoFe protein of nitrogenase. While 1s3p RXES studies have previously been reported, to our knowledge, 1s3p RXES has not been previously utilized to resolve questions of metal valency in highly covalent systems. As such, the approach presented herein provides chemists with means to more rigorously and quantitatively address challenging electronic-structure questions.
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Affiliation(s)
- Rebeca G. Castillo
- Department of Inorganic SpectroscopyMax Planck Institute for Chemical Energy ConversionStiftstrasse 34–3645470Mülheim an der RuhrGermany
| | - Anselm W. Hahn
- Department of Inorganic SpectroscopyMax Planck Institute for Chemical Energy ConversionStiftstrasse 34–3645470Mülheim an der RuhrGermany
| | | | - Justin T. Henthorn
- Department of Inorganic SpectroscopyMax Planck Institute for Chemical Energy ConversionStiftstrasse 34–3645470Mülheim an der RuhrGermany
| | - Jeremy McGale
- Department of Inorganic SpectroscopyMax Planck Institute for Chemical Energy ConversionStiftstrasse 34–3645470Mülheim an der RuhrGermany
| | - Serena DeBeer
- Department of Inorganic SpectroscopyMax Planck Institute for Chemical Energy ConversionStiftstrasse 34–3645470Mülheim an der RuhrGermany
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